Query 045354
Match_columns 615
No_of_seqs 185 out of 1136
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-160 4E-165 1353.3 52.9 601 1-614 89-702 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-125 4E-130 1031.3 33.6 526 1-614 79-613 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4.3E-72 9.3E-77 589.7 15.1 244 1-253 54-318 (319)
4 COG1874 LacA Beta-galactosidas 99.8 1.6E-19 3.6E-24 203.8 5.2 230 1-239 61-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.2 1.2E-10 2.6E-15 126.0 14.5 225 1-256 41-373 (374)
6 PF13364 BetaGal_dom4_5: Beta- 98.5 4.3E-07 9.4E-12 81.9 9.6 81 377-458 24-110 (111)
7 PF13364 BetaGal_dom4_5: Beta- 97.8 3.6E-05 7.7E-10 69.5 5.4 45 528-572 34-81 (111)
8 PF02837 Glyco_hydro_2_N: Glyc 97.7 0.00012 2.6E-09 69.9 8.2 95 384-480 64-164 (167)
9 smart00633 Glyco_10 Glycosyl h 96.6 0.0074 1.6E-07 62.1 8.4 109 1-134 10-125 (254)
10 PRK10150 beta-D-glucuronidase; 95.2 0.12 2.6E-06 59.8 11.2 95 386-482 63-179 (604)
11 PRK09525 lacZ beta-D-galactosi 94.4 0.22 4.7E-06 61.2 11.0 90 388-482 120-218 (1027)
12 PRK10340 ebgA cryptic beta-D-g 94.2 0.19 4E-06 61.8 10.0 93 388-482 109-206 (1021)
13 PF02836 Glyco_hydro_2_C: Glyc 93.4 0.78 1.7E-05 48.1 11.7 137 13-174 62-212 (298)
14 PRK10150 beta-D-glucuronidase; 93.1 3.2 6.9E-05 48.2 17.1 102 13-133 339-448 (604)
15 PF00150 Cellulase: Cellulase 93.1 0.78 1.7E-05 46.8 10.8 105 10-134 62-172 (281)
16 PLN02161 beta-amylase 92.2 0.71 1.5E-05 51.6 9.4 117 1-126 148-310 (531)
17 PF02837 Glyco_hydro_2_N: Glyc 91.8 0.16 3.5E-06 48.3 3.6 43 528-570 67-112 (167)
18 PLN02705 beta-amylase 91.4 1.2 2.6E-05 50.8 10.3 116 1-125 299-460 (681)
19 PLN00197 beta-amylase; Provisi 91.1 0.99 2.1E-05 51.0 9.2 116 1-125 158-319 (573)
20 PLN02803 beta-amylase 90.9 0.99 2.2E-05 50.8 8.9 116 1-125 138-299 (548)
21 smart00812 Alpha_L_fucos Alpha 90.7 23 0.0005 38.9 19.3 206 9-265 126-341 (384)
22 PLN02905 beta-amylase 90.4 1.3 2.9E-05 50.5 9.5 118 1-126 317-479 (702)
23 COG3693 XynA Beta-1,4-xylanase 89.7 2.1 4.6E-05 45.5 9.7 112 1-135 76-194 (345)
24 PLN02801 beta-amylase 86.6 2.9 6.4E-05 46.9 8.9 117 1-125 68-229 (517)
25 PF00331 Glyco_hydro_10: Glyco 86.4 1.4 3E-05 47.1 6.1 118 1-135 53-179 (320)
26 PRK10340 ebgA cryptic beta-D-g 78.6 11 0.00023 46.8 10.3 203 13-255 381-603 (1021)
27 PF06832 BiPBP_C: Penicillin-B 77.2 4.2 9.1E-05 34.8 4.7 51 405-459 33-84 (89)
28 PF14871 GHL6: Hypothetical gl 75.7 5.6 0.00012 37.1 5.4 65 10-75 43-121 (132)
29 PF01373 Glyco_hydro_14: Glyco 71.9 6.2 0.00013 43.4 5.3 112 1-122 47-195 (402)
30 PF08308 PEGA: PEGA domain; I 71.8 4.7 0.0001 32.8 3.4 47 407-461 3-49 (71)
31 PRK09525 lacZ beta-D-galactosi 68.1 30 0.00065 43.0 10.7 91 13-133 397-488 (1027)
32 PF11324 DUF3126: Protein of u 65.2 13 0.00027 30.3 4.4 22 412-433 25-46 (63)
33 PF03198 Glyco_hydro_72: Gluca 59.3 72 0.0016 34.1 10.1 101 4-130 73-179 (314)
34 COG3250 LacZ Beta-galactosidas 58.6 29 0.00063 41.9 7.9 78 12-120 346-423 (808)
35 PF01120 Alpha_L_fucos: Alpha- 53.6 3.2E+02 0.0069 29.5 14.5 202 8-259 135-342 (346)
36 KOG0496 Beta-galactosidase [Ca 48.4 7.6 0.00017 44.9 0.9 34 223-256 325-359 (649)
37 cd06545 GH18_3CO4_chitinase Th 45.9 1E+02 0.0023 31.4 8.8 73 2-100 37-110 (253)
38 PF13200 DUF4015: Putative gly 45.4 18 0.00038 38.8 3.0 21 10-30 61-81 (316)
39 KOG2024 Beta-Glucuronidase GUS 45.2 39 0.00084 35.2 5.2 58 373-431 70-135 (297)
40 COG1306 Uncharacterized conser 44.6 16 0.00035 38.6 2.5 21 10-30 124-144 (400)
41 TIGR00542 hxl6Piso_put hexulos 43.7 1.7E+02 0.0037 30.0 10.0 115 2-128 6-149 (279)
42 PF04914 DltD_C: DltD C-termin 43.5 50 0.0011 30.8 5.3 59 10-93 36-95 (130)
43 COG1324 CutA Uncharacterized p 41.7 49 0.0011 29.7 4.7 36 71-120 66-102 (104)
44 PF07691 PA14: PA14 domain; I 37.6 1.3E+02 0.0028 27.2 7.3 67 389-458 47-123 (145)
45 PRK05402 glycogen branching en 34.9 2.8E+02 0.006 33.2 11.1 24 6-29 311-334 (726)
46 smart00642 Aamy Alpha-amylase 33.9 36 0.00078 32.8 2.9 32 6-37 66-97 (166)
47 PF08531 Bac_rhamnosid_N: Alph 33.4 72 0.0016 30.8 4.9 51 407-458 7-68 (172)
48 COG1891 Uncharacterized protei 32.2 15 0.00033 35.9 0.0 27 3-29 160-186 (235)
49 TIGR03356 BGL beta-galactosida 30.9 32 0.00069 38.3 2.3 68 2-77 86-153 (427)
50 PF02638 DUF187: Glycosyl hydr 30.7 97 0.0021 33.0 5.8 78 11-97 71-162 (311)
51 PF00128 Alpha-amylase: Alpha 30.4 37 0.00079 34.6 2.5 26 6-31 48-73 (316)
52 PF15608 PELOTA_1: PELOTA RNA 28.8 58 0.0013 29.0 3.1 28 9-36 66-94 (100)
53 PF12733 Cadherin-like: Cadher 28.7 1.5E+02 0.0032 24.9 5.5 56 391-454 15-71 (88)
54 PF03422 CBM_6: Carbohydrate b 27.2 2.7E+02 0.0059 24.6 7.4 64 388-455 32-110 (125)
55 COG3867 Arabinogalactan endo-1 26.4 1.7E+02 0.0036 31.3 6.3 83 8-107 99-190 (403)
56 PF13204 DUF4038: Protein of u 26.2 2.8E+02 0.006 29.2 8.2 168 4-200 77-274 (289)
57 COG2730 BglC Endoglucanase [Ca 25.7 1.6E+02 0.0034 32.6 6.6 71 12-100 118-192 (407)
58 COG2360 Aat Leu/Phe-tRNA-prote 23.3 90 0.0019 31.5 3.6 104 2-119 75-205 (221)
59 PRK13209 L-xylulose 5-phosphat 22.4 3.1E+02 0.0068 28.0 7.7 110 6-128 17-154 (283)
60 PRK13210 putative L-xylulose 5 22.2 3.2E+02 0.0068 27.9 7.7 118 2-128 6-149 (284)
61 PRK14706 glycogen branching en 21.8 7.6E+02 0.016 29.2 11.4 25 6-30 213-237 (639)
62 PF04566 RNA_pol_Rpb2_4: RNA p 21.5 95 0.0021 25.2 2.8 14 419-432 1-14 (63)
63 KOG4092 Mitochondrial F1F0-ATP 21.4 52 0.0011 28.9 1.3 13 37-49 33-45 (108)
64 PF05763 DUF835: Protein of un 21.0 5.4E+02 0.012 24.0 8.2 106 2-128 1-114 (136)
65 PRK12313 glycogen branching en 20.8 73 0.0016 37.4 2.9 24 6-29 216-239 (633)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.9e-160 Score=1353.27 Aligned_cols=601 Identities=46% Similarity=0.906 Sum_probs=546.8
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
||+|||+|++||++||++|||+||||||||||||||||++||||+||+++|+|++||+||+||++|++|+++|+++|+++
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEecCCCCCccccccCCCcccCCCCCCCCC
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQSDAPQPMINTCNGFYCDEFVPNNPK 160 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~~~~~~~~~~t~ng~~~~~~~~~~p~ 160 (615)
+||+++||||||+|||||||++.+.++.+|++||+||+++|+++|++|||+||++.++++++++||||.+|+.|.+..+.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~ 248 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDY 248 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCC
Confidence 99999999999999999999987777778999999999999999999999999998888899999999999888877777
Q ss_pred CCceeeecccccccccCCCCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 045354 161 SPKMWTENWTGWFKKWGDKDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTNFGRDAGGPFIITSYDYDAPLDEYGNLN 240 (615)
Q Consensus 161 ~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Api~E~G~~~ 240 (615)
+|+|+||||+|||++||++++.|+++|++.+++++|++|+|++||||||||||||||+|+++++|||||||||+|+|+++
T Consensus 249 ~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t 328 (840)
T PLN03059 249 KPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPR 328 (840)
T ss_pred CCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999985
Q ss_pred ChhHHHHHHHHHHHhhhcccccCCCcccccCCCCceeeeeccCCCCCcee--eeecCCCCCcceEEeCCCceeeecCcce
Q 045354 241 QPKWGHLKQLHEAIKLGEKLLTSGNVTTKQFGNGVNLTTYSNTTSGERFC--FLSNTNTSQDANVDLQQDGKYFVPAWSV 318 (615)
Q Consensus 241 ~~ky~~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~g~~--fl~n~~~~~~~~v~~~~~~~~~lp~~~v 318 (615)
+|||.+||++|.+++.+++.|+..+|....+++.+++.+|..+ + .| |+.|++.+...+|+|+++ +|.||+|||
T Consensus 329 ~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~---~-~caaFl~n~~~~~~~~v~f~g~-~y~lp~~Sv 403 (840)
T PLN03059 329 EPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSK---S-ACAAFLANYDTKYSVKVTFGNG-QYDLPPWSV 403 (840)
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCc---c-chhhheeccCCCCceeEEECCc-ccccCccce
Confidence 5799999999999999988888888877788999999999853 3 47 999999888899999999 999999999
Q ss_pred eecccCCccccccceecceeeeeeccccccccccchhhhhcccc-cccCCCccccccchhhhccCCCCCcceEEEEEeec
Q 045354 319 SILHGCNKEVYNTAKVNTETTVMVKKPIELGTKLSWMWAQETIR-DTLHGKGRFNATKLIEQKEATSDESDYLWYMTSIE 397 (615)
Q Consensus 319 ~il~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~~~-~~~~~~~~~~~p~~mEql~~t~~~~GyvlY~T~i~ 397 (615)
+|||+|+.++|+|+++..|+..++..+. ...+.|+++.| + .+..++.+.+...++||+++|+|.+||+||+|+|.
T Consensus 404 silpd~~~~lfnta~v~~q~~~~~~~~~--~~~~~w~~~~e--~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~ 479 (840)
T PLN03059 404 SILPDCKTAVFNTARLGAQSSQMKMNPV--GSTFSWQSYNE--ETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVH 479 (840)
T ss_pred eecccccceeeeccccccccceeecccc--cccccceeecc--cccccccCCCcchhhHHHhhcccCCCCceEEEEEEEe
Confidence 9999999999999999988776644332 24679999999 5 33334456777888999999999999999999997
Q ss_pred cCCCCC------CCeeeEeCCcceEEEEEECCEEEEEEEcce----eeeeeeeeeCCCccEEEEEEeccCcccccCCcCC
Q 045354 398 NMGKSS------HNATLYVKSSGQVLHAYVNSKHIGSQFGYD----FEFKQPAILRPGKNFLTLLSATVGLQNYGEFFDL 467 (615)
Q Consensus 398 ~~~~~~------~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~----~~~~~~i~l~~g~~~L~ILvEnmGRvNyG~~~~~ 467 (615)
. ...+ ...+|+|.+++|++||||||+++|++++.. +.++.+++++.+.|+|+||||||||+|||++|++
T Consensus 480 ~-~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~ 558 (840)
T PLN03059 480 I-DPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFET 558 (840)
T ss_pred e-cCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccc
Confidence 6 3221 335699999999999999999999998765 4555556688899999999999999999999999
Q ss_pred CCcCCCCCCEEEcccCCcccccCCCccEEeccCccccccccCCCCCCCCcccCCCCCCCCCCceEEEEEEEcCCCCCceE
Q 045354 468 GPEGLAGGPVELNVDGMASLNLSSNIWNYKVGLNGEAKRLYDPNSPHPQIWKSSKKLPIGKPMKWYRTSFKIPPGTSPVV 547 (615)
Q Consensus 468 ~~KGI~g~~V~L~~~~~~~~~L~~~~W~y~l~l~~e~~~~~~~~~~~~~~w~~~~~~~~~~~p~fyr~tF~ip~~~d~tf 547 (615)
++|||+| +|+|++.+.++.+|++|.|.|+++|+||.+++++.++..++.|.+.+..+..+||+|||++|++|++.||||
T Consensus 559 ~~kGI~g-~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~ 637 (840)
T PLN03059 559 WNAGVLG-PVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLA 637 (840)
T ss_pred ccccccc-cEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEE
Confidence 9999999 899999777778899999999999999999998876556788976643344567999999999999999999
Q ss_pred EEeCCCceEEEEEcCccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeecCccccc
Q 045354 548 VDLQGMGKGHAWVNGNSLGRYWPSQIADTNGCSDTCDYRGEYKPEKCVTNCGNPSQRWYNFNHFLQQ 614 (615)
Q Consensus 548 Ld~~gwgKG~vwVNG~nLGRYW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sq~~yhvp~~~l~ 614 (615)
|||++||||+|||||+||||||+.. ++..|| +.|||+|.|++.||+||||+||||+|||||+||+
T Consensus 638 LDm~gmGKG~aWVNG~nIGRYW~~~-a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk 702 (840)
T PLN03059 638 LDMSSMGKGQIWINGQSIGRHWPAY-TAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLK 702 (840)
T ss_pred EecccCCCeeEEECCcccccccccc-cccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhc
Confidence 9999999999999999999999984 667899 7899999999999999999999999999999997
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-125 Score=1031.33 Aligned_cols=526 Identities=51% Similarity=0.955 Sum_probs=473.5
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
||+|||+|+.||++||++|++.|||||||+||||||||++||||.||..+|+|.+||+|++|+++|++|+++|+++++
T Consensus 79 ~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk-- 156 (649)
T KOG0496|consen 79 PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK-- 156 (649)
T ss_pred CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--
Confidence 799999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEecCCCCCccccccCCCccc-CCCC-CCC
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQSDAPQPMINTCNGFYC-DEFV-PNN 158 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~~~~~~~~~~t~ng~~~-~~~~-~~~ 158 (615)
+|+++|||||||+|||||||.+...|++..++|+.|-..++...+.+|||++|.+.++|+.++++|||++| +.|. +++
T Consensus 157 ~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~ 236 (649)
T KOG0496|consen 157 KLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNS 236 (649)
T ss_pred HHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCC
Confidence 99999999999999999999887778888999999999999999999999999999999999999999999 8887 899
Q ss_pred CCCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 045354 159 PKSPKMWTENWTGWFKKWGDKDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTNFGRDAGGPFIITSYDYDAPLDEYGN 238 (615)
Q Consensus 159 p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Api~E~G~ 238 (615)
|++|+||||+|+|||++||++++.|++++++..+++++++|++++||||+|||||||++|| ++.+|||||||||+ |.
T Consensus 237 ~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl 313 (649)
T KOG0496|consen 237 PNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GL 313 (649)
T ss_pred CCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hh
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999999999 88
Q ss_pred CCChhHHHHHHHHHHHhhhcccccCCCcccccCCCCceeeeeccCCCCCcee--eeecCCCCCcceEEeCCCceeeecCc
Q 045354 239 LNQPKWGHLKQLHEAIKLGEKLLTSGNVTTKQFGNGVNLTTYSNTTSGERFC--FLSNTNTSQDANVDLQQDGKYFVPAW 316 (615)
Q Consensus 239 ~~~~ky~~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~g~~--fl~n~~~~~~~~v~~~~~~~~~lp~~ 316 (615)
.++|||.++|.+|..++.+++.+..+++.... |.. ..+.| |+.|++......+.|++. .+.+|++
T Consensus 314 ~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~k---------yg~---~~~~C~~Fl~n~~~~~~~~v~f~~~-~y~~~~~ 380 (649)
T KOG0496|consen 314 LRQPKYGHLKPLHTSYDYCEPALVAGDITTAK---------YGN---LREACAAFLSNNNGAPAAPVPFNKP-KYRLPPW 380 (649)
T ss_pred hcCCCccccccchhhhhhcCccccccCccccc---------ccc---hhhHHHHHHhcCCCCCCCccccCCC-ccccCce
Confidence 89999999999999999999888777744322 322 23346 999999888889999888 9999999
Q ss_pred ceeecccCCccccccceecceeeeeeccccccccccchhhhhcccccccCCCccccccchhhhccCCCCCcceEEEEEee
Q 045354 317 SVSILHGCNKEVYNTAKVNTETTVMVKKPIELGTKLSWMWAQETIRDTLHGKGRFNATKLIEQKEATSDESDYLWYMTSI 396 (615)
Q Consensus 317 ~v~il~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~p~~mEql~~t~~~~GyvlY~T~i 396 (615)
+++|+|+|.+++|+|+++..+ |....| + .++|..++ .+||++|+|.+
T Consensus 381 slsilpdck~~~~nta~~~~~----------------~~~~~e--~------------~~~~~~~~---~~~~ll~~~~~ 427 (649)
T KOG0496|consen 381 SLSILPDCKTVVYNTAKVMAQ----------------WISFTE--P------------IPSEAVGQ---SFGGLLEQTNL 427 (649)
T ss_pred eEEechhhcchhhhccccccc----------------cccccC--C------------CccccccC---cceEEEEEEee
Confidence 999999999999999887422 333334 3 34667666 88999999999
Q ss_pred ccCCCCCCCeeeEeC-CcceEEEEEECCEEEEEEEcce----eeeeeeeeeCCCccEEEEEEeccCcccccCCcCCCCcC
Q 045354 397 ENMGKSSHNATLYVK-SSGQVLHAYVNSKHIGSQFGYD----FEFKQPAILRPGKNFLTLLSATVGLQNYGEFFDLGPEG 471 (615)
Q Consensus 397 ~~~~~~~~~~~L~v~-~~~D~a~Vfvng~~~G~~~~~~----~~~~~~i~l~~g~~~L~ILvEnmGRvNyG~~~~~~~KG 471 (615)
+. +.++ ...|+|. +++|++||||||+++|+++++. ..+..++.+..|.|+|+|||||+||+||| ++++++||
T Consensus 428 t~-d~sd-~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~G 504 (649)
T KOG0496|consen 428 TK-DKSD-TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKG 504 (649)
T ss_pred cc-ccCC-CceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccc
Confidence 76 3322 3568888 9999999999999999999864 45555667788999999999999999999 88999999
Q ss_pred CCCCCEEEcccCCcccccCCCccEEeccCccccccccCCCCCCCCcccCCCCCCCCCCceEEEEEEEcCCCCCceEEEeC
Q 045354 472 LAGGPVELNVDGMASLNLSSNIWNYKVGLNGEAKRLYDPNSPHPQIWKSSKKLPIGKPMKWYRTSFKIPPGTSPVVVDLQ 551 (615)
Q Consensus 472 I~g~~V~L~~~~~~~~~L~~~~W~y~l~l~~e~~~~~~~~~~~~~~w~~~~~~~~~~~p~fyr~tF~ip~~~d~tfLd~~ 551 (615)
|+| +|+|++. +++++++|.|+++|.+|....++++..++++|......+..+|.+||+ +|++|++.+||||||+
T Consensus 505 i~g-~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~ 578 (649)
T KOG0496|consen 505 ILG-PVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMN 578 (649)
T ss_pred ccc-ceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecC
Confidence 999 9999997 467777888999999999999999888889998765433336788888 9999999999999999
Q ss_pred CCceEEEEEcCccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeecCccccc
Q 045354 552 GMGKGHAWVNGNSLGRYWPSQIADTNGCSDTCDYRGEYKPEKCVTNCGNPSQRWYNFNHFLQQ 614 (615)
Q Consensus 552 gwgKG~vwVNG~nLGRYW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sq~~yhvp~~~l~ 614 (615)
|||||+|||||+|||||||++ |+ |+.|||||+||+
T Consensus 579 g~GKG~vwVNG~niGRYW~~~--------------------------G~--Q~~yhvPr~~Lk 613 (649)
T KOG0496|consen 579 GWGKGQVWVNGQNIGRYWPSF--------------------------GP--QRTYHVPRSWLK 613 (649)
T ss_pred CCcceEEEECCcccccccCCC--------------------------CC--ceEEECcHHHhC
Confidence 999999999999999999987 45 999999999997
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4.3e-72 Score=589.72 Aligned_cols=244 Identities=41% Similarity=0.779 Sum_probs=183.9
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
||+|||+|++||++||++|+|+||+|||||||||||||++||||+||++++++++||+||+||++|++|+++|+++|+
T Consensus 54 ~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~-- 131 (319)
T PF01301_consen 54 EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK-- 131 (319)
T ss_dssp TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--
T ss_pred CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCc-cceEEecCCC--------CCccccccCCCccc
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIG-VPWIMCQQSD--------APQPMINTCNGFYC 151 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~-vP~~~~~~~~--------~~~~~~~t~ng~~~ 151 (615)
++|+++||||||||||||||+. .++++||+.|++++++.|++ +++++++... .++..+.+++++.|
T Consensus 132 ~~~~~~GGpII~vQvENEyg~~-----~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~ 206 (319)
T PF01301_consen 132 PLQYTNGGPIIMVQVENEYGSY-----GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPP 206 (319)
T ss_dssp GGBGGGTSSEEEEEESSSGGCT-----SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETT
T ss_pred hhhhcCCCceehhhhhhhhCCC-----cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCC
Confidence 8999999999999999999953 37999999999999999998 6677776421 22222333444444
Q ss_pred CC--------CCCCCCCCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCCCCCCCCCCCc
Q 045354 152 DE--------FVPNNPKSPKMWTENWTGWFKKWGDKDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTNFGRDAGGPFI 223 (615)
Q Consensus 152 ~~--------~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~ 223 (615)
.. ....+|++|+|++|||+|||++||.+++.+++++++..++++++.| +++||||||||||||+++|++..
T Consensus 207 ~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~ 285 (319)
T PF01301_consen 207 GDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYY 285 (319)
T ss_dssp TSSHHHHHHHHHHHHTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETT
T ss_pred CchHHHHHhhhhhcCCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCC
Confidence 21 1255788999999999999999999999999999999999999999 45899999999999999986554
Q ss_pred ----cccCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 045354 224 ----ITSYDYDAPLDEYGNLNQPKWGHLKQLHEA 253 (615)
Q Consensus 224 ----~tSYDy~Api~E~G~~~~~ky~~lr~l~~~ 253 (615)
+|||||+|||+|+|++ +|||.+||+||.+
T Consensus 286 ~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 286 GQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp TEEB-SB--TT-SB-TTS-B--HHHHHHHHHHHT
T ss_pred CCCCcccCCcCCccCcCCCc-CHHHHHHHHHHhc
Confidence 5999999999999998 7999999999964
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.6e-19 Score=203.83 Aligned_cols=230 Identities=20% Similarity=0.275 Sum_probs=147.4
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCc-eeccccCCCCcCcccccCCCceeec---------CChhhHHHHHHHH
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGP-YVCSEWNYGGFPVWLHNIPGIQLRT---------NNEIYKNEMQIFT 70 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGP-YIcaEw~~GGlP~WL~~~~~~~lRs---------~d~~yl~~v~~~~ 70 (615)
+|+|||+ .+|+. ||++|++.||+||||||| .+|.+|..+++|+||...+.-.+|. ++|-|++++++
T Consensus 61 eG~fdf~-~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~-- 136 (673)
T COG1874 61 EGKFDFT-WLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR-- 136 (673)
T ss_pred ccccCcc-cchHH-HHHHHHhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH--
Confidence 6999999 99999 999999999999999999 9999999999999998876533443 34557777766
Q ss_pred HHHHHHHHhcCccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhC-CCccceEEecCC-CCC-ccccccCC
Q 045354 71 TKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQ-NIGVPWIMCQQS-DAP-QPMINTCN 147 (615)
Q Consensus 71 ~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~-gi~vP~~~~~~~-~~~-~~~~~t~n 147 (615)
|+++|+ +..+++|++||++|++||||++.+.+..|.+..-.||++-.-.. -++-+|=+.--+ ... -..+.+-+
T Consensus 137 --i~~~ir--er~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~ 212 (673)
T COG1874 137 --ILQQIR--ERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPN 212 (673)
T ss_pred --HHHHHH--HHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCC
Confidence 566666 34468999999999999999853333445555656666544210 011121111000 000 00011111
Q ss_pred -----Cccc--CCCCCCCCCC----Cceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHcCCceeeeeeeecCCCC
Q 045354 148 -----GFYC--DEFVPNNPKS----PKMWTENWTGWF-KKWGDKDPHRT-PQDVSFAVARFFQAGGVLQNYYMYHGGTNF 214 (615)
Q Consensus 148 -----g~~~--~~~~~~~p~~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNf 214 (615)
+... -++......+ +....|.+-+|| +.|..+.--.. .+.-...+++.|..+.. -||||||+|++|
T Consensus 213 ~~~e~~~~~~~ld~~~f~~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~ 291 (673)
T COG1874 213 PFGELPLPGLYLDYRRFESEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDF 291 (673)
T ss_pred CccccCCccchhhHhhhhhhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccch
Confidence 1000 1222222333 566677777888 55554332222 22223345566666655 699999999999
Q ss_pred C------CCCCCC---C-------ccccCCCCCCCCCCCCC
Q 045354 215 G------RDAGGP---F-------IITSYDYDAPLDEYGNL 239 (615)
Q Consensus 215 G------~~~G~~---~-------~~tSYDy~Api~E~G~~ 239 (615)
+ +.+|+. + ..+++++.+.+.+.|..
T Consensus 292 ~~~~h~l~r~~~~~~~~~~me~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 292 TKFIHDLFRNGKQGQPFWLMEQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred hhhhHHHHHhhccCCceeeccCCcchhhhhhccCCCCCccc
Confidence 9 676653 2 57999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.22 E-value=1.2e-10 Score=126.03 Aligned_cols=225 Identities=17% Similarity=0.254 Sum_probs=124.7
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCccccc-CCCceee----------------cCChhhH
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHN-IPGIQLR----------------TNNEIYK 63 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~-~~~~~lR----------------s~d~~yl 63 (615)
||+|||+. |+++|++|+++||.|||+.. ....|.||.+ .|++..+ .++|.|+
T Consensus 41 eG~ydF~~---lD~~l~~a~~~Gi~viL~~~--------~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr 109 (374)
T PF02449_consen 41 EGQYDFSW---LDRVLDLAAKHGIKVILGTP--------TAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYR 109 (374)
T ss_dssp TTB---HH---HHHHHHHHHCTT-EEEEEEC--------TTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHH
T ss_pred CCeeecHH---HHHHHHHHHhccCeEEEEec--------ccccccchhhhcccccccCCCCCcCccCCccccchhHHHHH
Confidence 79999996 99999999999999999944 7789999975 4654321 3478999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHH----------------------
Q 045354 64 NEMQIFTTKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMA---------------------- 121 (615)
Q Consensus 64 ~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~---------------------- 121 (615)
+++++++++|++..+. ...||++||+||++...+....+-++|.+||++.+
T Consensus 110 ~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f 182 (374)
T PF02449_consen 110 EYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSF 182 (374)
T ss_dssp HHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSG
T ss_pred HHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcH
Confidence 9999999999887763 34799999999998631111123345555555543
Q ss_pred ----------------------------------------HhCCCccceEEecCCC---CCcc-----cccc--CCCccc
Q 045354 122 ----------------------------------------TSQNIGVPWIMCQQSD---APQP-----MINT--CNGFYC 151 (615)
Q Consensus 122 ----------------------------------------~~~gi~vP~~~~~~~~---~~~~-----~~~t--~ng~~~ 151 (615)
|+..-+.|++++-... ..+. .++. ++ .|.
T Consensus 183 ~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d-~Y~ 261 (374)
T PF02449_consen 183 DEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWD-SYP 261 (374)
T ss_dssp GG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEE-E-H
T ss_pred HhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHHHHHhhCCcceec-ccc
Confidence 3333333333321110 0000 0000 00 000
Q ss_pred C--------C----------CCCCCCCCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCC
Q 045354 152 D--------E----------FVPNNPKSPKMWTENWTGWFKKWGDKDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTN 213 (615)
Q Consensus 152 ~--------~----------~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTN 213 (615)
. . .+....++|.+++|.++| -..|+.......+..+....-..++.|+..+.|+-+ ....
T Consensus 262 ~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~ 339 (374)
T PF02449_consen 262 DGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSR 339 (374)
T ss_dssp HHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--S
T ss_pred CcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCC
Confidence 0 0 012247899999999999 555765555556677776666788999998888766 3323
Q ss_pred CCCCCCCCCccccCCCCCCCCCCC-CCCChhHHHHHHHHHHHhh
Q 045354 214 FGRDAGGPFIITSYDYDAPLDEYG-NLNQPKWGHLKQLHEAIKL 256 (615)
Q Consensus 214 fG~~~G~~~~~tSYDy~Api~E~G-~~~~~ky~~lr~l~~~~~~ 256 (615)
+|.-. | ..+.|+-+| . .+++|.+++++..-|+.
T Consensus 340 ~g~E~--------~-~~g~~~~dg~~-~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 340 FGAEQ--------F-HGGLVDHDGRE-PTRRYREVAQLGRELKK 373 (374)
T ss_dssp SSTTT--------T-S--SB-TTS---B-HHHHHHHHHHHHHHT
T ss_pred CCchh--------h-hcccCCccCCC-CCcHHHHHHHHHHHHhc
Confidence 33211 1 147888999 6 48999999999887653
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.54 E-value=4.3e-07 Score=81.89 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=57.9
Q ss_pred hhhccCCCCCcceEEEEEeeccCCCCCCCee-eEeC-CcceEEEEEECCEEEEEEE---cceeeeeeeee-eCCCccEEE
Q 045354 377 IEQKEATSDESDYLWYMTSIENMGKSSHNAT-LYVK-SSGQVLHAYVNSKHIGSQF---GYDFEFKQPAI-LRPGKNFLT 450 (615)
Q Consensus 377 mEql~~t~~~~GyvlY~T~i~~~~~~~~~~~-L~v~-~~~D~a~Vfvng~~~G~~~---~~~~~~~~~i~-l~~g~~~L~ 450 (615)
.+..+..++..|++|||+++.. .+.+.... |.+. +.+.+++|||||+++|... +...++++|.. |+.+.++|.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~-~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~~n~v~~ 102 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTG-TGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKYGNNVLV 102 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEET-TTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTTCEEEEE
T ss_pred eeccCccccCCCCEEEEEEEeC-CCcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecCCCEEEE
Confidence 4555556678999999999975 32223334 4444 7899999999999999987 22356666653 555677899
Q ss_pred EEEeccCc
Q 045354 451 LLSATVGL 458 (615)
Q Consensus 451 ILvEnmGR 458 (615)
+|+++||+
T Consensus 103 vl~~~~g~ 110 (111)
T PF13364_consen 103 VLWDNMGH 110 (111)
T ss_dssp EEEE-STT
T ss_pred EEEeCCCC
Confidence 99999996
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.77 E-value=3.6e-05 Score=69.47 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=32.8
Q ss_pred CCceEEEEEEEcCCCCCceE-EE--eCCCceEEEEEcCcccccccccc
Q 045354 528 KPMKWYRTSFKIPPGTSPVV-VD--LQGMGKGHAWVNGNSLGRYWPSQ 572 (615)
Q Consensus 528 ~~p~fyr~tF~ip~~~d~tf-Ld--~~gwgKG~vwVNG~nLGRYW~~~ 572 (615)
.+..|||++|+.......+. |. ...+.+++|||||++|||||+..
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~ 81 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI 81 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC
Confidence 46899999996422111223 33 35689999999999999999766
No 8
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.71 E-value=0.00012 Score=69.90 Aligned_cols=95 Identities=27% Similarity=0.328 Sum_probs=65.7
Q ss_pred CCCcceEEEEEeeccCCCC--CCCeeeEeCCcceEEEEEECCEEEEEEEcce--eeeeeeeeeCCCc-cEEEEEEeccCc
Q 045354 384 SDESDYLWYMTSIENMGKS--SHNATLYVKSSGQVLHAYVNSKHIGSQFGYD--FEFKQPAILRPGK-NFLTLLSATVGL 458 (615)
Q Consensus 384 ~~~~GyvlY~T~i~~~~~~--~~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~--~~~~~~i~l~~g~-~~L~ILvEnmGR 458 (615)
....|+.|||++|.. ... .....|.+.++.+.+.|||||+++|...... +.+.++-.|+.|. |+|.|.|.+...
T Consensus 64 ~~~~~~~wYr~~f~l-p~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~V~v~~~~~ 142 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTL-PADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITDYLKPGEENTLAVRVDNWPD 142 (167)
T ss_dssp STCCSEEEEEEEEEE-SGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGGGSSSEEEEEEEEEEESSSG
T ss_pred cccCceEEEEEEEEe-CchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChhhccCCCCEEEEEEEeecCC
Confidence 347799999999976 321 2445678899999999999999999987644 3444443567777 999999986554
Q ss_pred ccccCCc-CCCCcCCCCCCEEEc
Q 045354 459 QNYGEFF-DLGPEGLAGGPVELN 480 (615)
Q Consensus 459 vNyG~~~-~~~~KGI~g~~V~L~ 480 (615)
-.+-..+ .....||.+ +|.|.
T Consensus 143 ~~~~~~~~~~~~~GI~r-~V~L~ 164 (167)
T PF02837_consen 143 GSTIPGFDYFNYAGIWR-PVWLE 164 (167)
T ss_dssp GGCGBSSSEEE--EEES-EEEEE
T ss_pred CceeecCcCCccCcccc-EEEEE
Confidence 3321111 124579988 88874
No 9
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.59 E-value=0.0074 Score=62.11 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=78.4
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
+|+|||+. .+++++.|+++||.| |..+-+ |-. ..|.|+...+ .+...+++.+|++.++.+.+
T Consensus 10 ~G~~n~~~---~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v~~ry~-- 71 (254)
T smart00633 10 RGQFNFSG---ADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTVVGRYK-- 71 (254)
T ss_pred CCccChHH---HHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHHHHHhC--
Confidence 68999985 888999999999998 544433 544 7899986432 33456777888887766543
Q ss_pred CccccCCCceEEEeeccccccccC------C-CccccHHHHHHHHHHHHhCCCccceEEec
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMG------P-YKEAGKSYINWCAQMATSQNIGVPWIMCQ 134 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~------~-~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~ 134 (615)
|.|..++|=||=-+... . +...+.+|+...-+.||+...++.++.++
T Consensus 72 -------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 72 -------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred -------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 67899999999322110 0 11123579999999999998889999886
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.20 E-value=0.12 Score=59.82 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=64.0
Q ss_pred CcceEEEEEeeccCCCC--CCCeeeEeCCcceEEEEEECCEEEEEEEcceeeeeeee--eeCCCcc-EEEEEEeccCcc-
Q 045354 386 ESDYLWYMTSIENMGKS--SHNATLYVKSSGQVLHAYVNSKHIGSQFGYDFEFKQPA--ILRPGKN-FLTLLSATVGLQ- 459 (615)
Q Consensus 386 ~~GyvlY~T~i~~~~~~--~~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~i--~l~~g~~-~L~ILvEnmGRv- 459 (615)
..|..|||++|.. ... .....|...++.-.|.|||||+.||........+++.| .|+.|.+ +|.|.|.|.-+.
T Consensus 63 ~~G~~WYrr~f~l-p~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~v~n~~~~~ 141 (604)
T PRK10150 63 YVGDVWYQREVFI-PKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVNNELNWQ 141 (604)
T ss_pred CcccEEEEEEEEC-CcccCCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCchhccCCCceEEEEEEecCCCcc
Confidence 5688999999976 321 23467889999999999999999998776543344444 4566654 999999874221
Q ss_pred --cccCCc-------------C-CCCcCCCCCCEEEccc
Q 045354 460 --NYGEFF-------------D-LGPEGLAGGPVELNVD 482 (615)
Q Consensus 460 --NyG~~~-------------~-~~~KGI~g~~V~L~~~ 482 (615)
..|... . -..-||.. +|.|...
T Consensus 142 ~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r-~V~L~~~ 179 (604)
T PRK10150 142 TLPPGNVIEDGNGKKKQKYNFDFFNYAGIHR-PVMLYTT 179 (604)
T ss_pred cCCCCccccCCccccccccccccccccCCCc-eEEEEEc
Confidence 011100 0 12569999 8999653
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.40 E-value=0.22 Score=61.21 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=62.0
Q ss_pred ceEEEEEeeccCCCC--CC-CeeeEeCCcceEEEEEECCEEEEEEEcce--eeeeeeeeeCCCccEEEEEEeccCccccc
Q 045354 388 DYLWYMTSIENMGKS--SH-NATLYVKSSGQVLHAYVNSKHIGSQFGYD--FEFKQPAILRPGKNFLTLLSATVGLQNYG 462 (615)
Q Consensus 388 GyvlY~T~i~~~~~~--~~-~~~L~v~~~~D~a~Vfvng~~~G~~~~~~--~~~~~~i~l~~g~~~L~ILvEnmGRvNyG 462 (615)
+-.|||+++.. ... .. ...|...++.-.+.|||||+++|.-.... +.+.++-.|+.|+|+|.|.|...-.-+|
T Consensus 120 ~~gwYrr~F~v-p~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V~~~sdgs~- 197 (1027)
T PRK09525 120 PTGCYSLTFTV-DESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRAGENRLAVMVLRWSDGSY- 197 (1027)
T ss_pred CeEEEEEEEEe-ChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcCCccEEEEEEEecCCCCc-
Confidence 67899999976 321 12 45788999999999999999999876544 3444443467788999998853221122
Q ss_pred CCcCC----CCcCCCCCCEEEccc
Q 045354 463 EFFDL----GPEGLAGGPVELNVD 482 (615)
Q Consensus 463 ~~~~~----~~KGI~g~~V~L~~~ 482 (615)
+++ ...||.. +|.|...
T Consensus 198 --~e~qd~w~~sGI~R-~V~L~~~ 218 (1027)
T PRK09525 198 --LEDQDMWRMSGIFR-DVSLLHK 218 (1027)
T ss_pred --cccCCceeeccccc-eEEEEEc
Confidence 221 2369999 8998654
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.24 E-value=0.19 Score=61.78 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=63.8
Q ss_pred ceEEEEEeeccCCCC--CCCeeeEeCCcceEEEEEECCEEEEEEEcce--eeeeeeeeeCCCccEEEEEEeccCcccccC
Q 045354 388 DYLWYMTSIENMGKS--SHNATLYVKSSGQVLHAYVNSKHIGSQFGYD--FEFKQPAILRPGKNFLTLLSATVGLQNYGE 463 (615)
Q Consensus 388 GyvlY~T~i~~~~~~--~~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~--~~~~~~i~l~~g~~~L~ILvEnmGRvNyG~ 463 (615)
|--|||+++.. ... .....|...++.-.+.|||||++||.-.... +.+.++-.|+.|.|+|.|.|.+...-.|-.
T Consensus 109 ~~g~Yrr~F~l-p~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~~~~d~s~le 187 (1021)
T PRK10340 109 PTGAYQRTFTL-SDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYLE 187 (1021)
T ss_pred CeEEEEEEEEe-CcccccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcchhhCCCccEEEEEEEecCCCCccc
Confidence 56799999976 221 2346788999999999999999999876543 444444346778899999997543222211
Q ss_pred CcC-CCCcCCCCCCEEEccc
Q 045354 464 FFD-LGPEGLAGGPVELNVD 482 (615)
Q Consensus 464 ~~~-~~~KGI~g~~V~L~~~ 482 (615)
..+ -..-||.. +|.|...
T Consensus 188 ~qd~w~~sGI~R-~V~L~~~ 206 (1021)
T PRK10340 188 DQDMWWLAGIFR-DVYLVGK 206 (1021)
T ss_pred cCCccccccccc-eEEEEEe
Confidence 111 12469998 8999764
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=93.42 E-value=0.78 Score=48.14 Aligned_cols=137 Identities=14% Similarity=0.258 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCCceEE
Q 045354 13 IKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGPIIL 92 (615)
Q Consensus 13 ~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~ 92 (615)
.+|+++|-+.||+|+.-+ ...++=.|-... .......||.|.+.+.+-+++++.+.+.| -.|||
T Consensus 62 ~~~~~~cD~~GilV~~e~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~ 125 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEI--------PLEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNH-------PSIIM 125 (298)
T ss_dssp HHHHHHHHHHT-EEEEE---------S-BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEE
T ss_pred HHHHHHHhhcCCEEEEec--------cccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchhe
Confidence 689999999999998753 222222232111 11356789999998888888887777643 48999
Q ss_pred EeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEecCCC--CCccc-cccCCCccc-----CCCC----C--CC
Q 045354 93 AQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQSD--APQPM-INTCNGFYC-----DEFV----P--NN 158 (615)
Q Consensus 93 vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~~~--~~~~~-~~t~ng~~~-----~~~~----~--~~ 158 (615)
.=+=||-. ...+++.|.+++++..-.-|+....... ..+.+ .+...+.+. +.+. . ..
T Consensus 126 W~~gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 196 (298)
T PF02836_consen 126 WSLGNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKY 196 (298)
T ss_dssp EEEEESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHH
T ss_pred eecCccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhcccc
Confidence 99999982 3578999999999877776765544310 11111 111111111 0111 1 34
Q ss_pred CCCCceeeeccccccc
Q 045354 159 PKSPKMWTENWTGWFK 174 (615)
Q Consensus 159 p~~P~~~~E~~~Gwf~ 174 (615)
+++|++.+||....+.
T Consensus 197 ~~kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 197 PDKPIIISEYGADAYN 212 (298)
T ss_dssp CTS-EEEEEESEBBSS
T ss_pred CCCCeEehhccccccc
Confidence 7899999999765544
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=93.11 E-value=3.2 Score=48.19 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCcEEEEecCceeccccCCCCcCcccc-------c-CCCceeecCChhhHHHHHHHHHHHHHHHHhcCccc
Q 045354 13 IKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLH-------N-IPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFA 84 (615)
Q Consensus 13 ~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~-------~-~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~ 84 (615)
.+|+++|-|.||+|+.-. ..-|+..|+. + .+....-..+|.+.++..+-+++++.+-+
T Consensus 339 ~~~~~~cD~~GllV~~E~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------ 404 (604)
T PRK10150 339 EEMLDLADRHGIVVIDET--------PAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------ 404 (604)
T ss_pred HHHHHHHHhcCcEEEEec--------ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc------
Confidence 579999999999988652 2222322321 0 11111123345666555544444444433
Q ss_pred cCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEe
Q 045354 85 PQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMC 133 (615)
Q Consensus 85 ~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~ 133 (615)
|---|||.=+=||-... ......+++.|.+++++..-.-|....
T Consensus 405 -NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 -NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred -CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 55689999999996431 113457889999999987776665544
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.06 E-value=0.78 Score=46.76 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCCc
Q 045354 10 LDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGP 89 (615)
Q Consensus 10 ~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGp 89 (615)
..|+++|+.|++.||+|||-+=.. |.|....... .. ......||+.+...|++ . +++..+
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~~----------~~w~~~~~~~---~~----~~~~~~~~~~~~~~la~--~-y~~~~~ 121 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHNA----------PGWANGGDGY---GN----NDTAQAWFKSFWRALAK--R-YKDNPP 121 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEES----------TTCSSSTSTT---TT----HHHHHHHHHHHHHHHHH--H-HTTTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEeccC----------cccccccccc---cc----chhhHHHHHhhhhhhcc--c-cCCCCc
Confidence 678999999999999999864322 7774322111 11 22244445554444442 1 123457
Q ss_pred eEEEeeccccccccCC--Cc----cccHHHHHHHHHHHHhCCCccceEEec
Q 045354 90 IILAQIENEYGNIMGP--YK----EAGKSYINWCAQMATSQNIGVPWIMCQ 134 (615)
Q Consensus 90 II~vQiENEyg~~~~~--~g----~~~~~Ym~~L~~~~~~~gi~vP~~~~~ 134 (615)
|++++|=||=...... .. ..-.++++.+.+.+|+.+.+.+++...
T Consensus 122 v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 122 VVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp TEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred EEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 9999999997653210 00 112466777777888888887766543
No 16
>PLN02161 beta-amylase
Probab=92.18 E-value=0.71 Score=51.64 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=70.7
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----CcCccccc----CCCceeec----CChhhHH---
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----GFPVWLHN----IPGIQLRT----NNEIYKN--- 64 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----GlP~WL~~----~~~~~lRs----~d~~yl~--- 64 (615)
|++|||+| -.+++++++++||.+.+-.-=.-|+- ..| -||.|+.. +|+|-... .|+.||.
T Consensus 148 p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~ 223 (531)
T PLN02161 148 PLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGV 223 (531)
T ss_pred CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeec
Confidence 68999999 77788999999999877655454433 222 38999974 46664332 1233332
Q ss_pred -------------HHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc-----CCCc-----cc-cHHHH
Q 045354 65 -------------EMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM-----GPYK-----EA-GKSYI 114 (615)
Q Consensus 65 -------------~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~-----~~~g-----~~-~~~Ym 114 (615)
.-+.|++..-...+ +++ ||-|.-||| |=-|=||. |.|. .| |+.-+
T Consensus 224 D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~~---~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l 298 (531)
T PLN02161 224 DQLPLFGGRTAVQCYEDFMLSFSTKFE--PYI---GNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMM 298 (531)
T ss_pred ccchhcCCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHH
Confidence 33444555555555 443 578989998 66666652 2221 12 44444
Q ss_pred HHHHHHHHhCCC
Q 045354 115 NWCAQMATSQNI 126 (615)
Q Consensus 115 ~~L~~~~~~~gi 126 (615)
..|++.|.+.|-
T Consensus 299 ~~L~~~A~~~G~ 310 (531)
T PLN02161 299 EDLMAVASQEGK 310 (531)
T ss_pred HHHHHHHHHhCC
Confidence 567777776443
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=91.79 E-value=0.16 Score=48.26 Aligned_cols=43 Identities=26% Similarity=0.541 Sum_probs=35.9
Q ss_pred CCceEEEEEEEcCCCC--CceEEEeCCC-ceEEEEEcCcccccccc
Q 045354 528 KPMKWYRTSFKIPPGT--SPVVVDLQGM-GKGHAWVNGNSLGRYWP 570 (615)
Q Consensus 528 ~~p~fyr~tF~ip~~~--d~tfLd~~gw-gKG~vwVNG~nLGRYW~ 570 (615)
....|||.+|++|+.. ..++|.+.+- ....|||||+.+|+...
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~ 112 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG 112 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC
Confidence 4679999999998743 3589999984 69999999999999654
No 18
>PLN02705 beta-amylase
Probab=91.44 E-value=1.2 Score=50.81 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=71.2
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCC------cCccccc----CCCceeec-------------
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGG------FPVWLHN----IPGIQLRT------------- 57 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GG------lP~WL~~----~~~~~lRs------------- 57 (615)
|++|||+| -.++++||+++||.+.+-.-=.-|+- |.| ||.|++. .|+|-.-.
T Consensus 299 P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG--NVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg 373 (681)
T PLN02705 299 PQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG--NASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWS 373 (681)
T ss_pred CCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC--CCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeee
Confidence 68999999 77778999999999877665555654 434 9999975 35553221
Q ss_pred -CCh------hhHHHHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc----CCCc-----cc-cHHHH
Q 045354 58 -NNE------IYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM----GPYK-----EA-GKSYI 114 (615)
Q Consensus 58 -~d~------~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~----~~~g-----~~-~~~Ym 114 (615)
++- .-++.-..|++..-...+ +++ .+|-|.-||| |=-|=||. |.|. .| |+.-+
T Consensus 374 ~D~~pvl~GRTplq~Y~DFM~SFr~~F~--~fl--~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkyml 449 (681)
T PLN02705 374 IDKERVLKGRTGIEVYFDFMRSFRSEFD--DLF--VEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQ 449 (681)
T ss_pred cCcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHH
Confidence 111 123344444444444445 332 3578999998 55566652 2221 13 44444
Q ss_pred HHHHHHHHhCC
Q 045354 115 NWCAQMATSQN 125 (615)
Q Consensus 115 ~~L~~~~~~~g 125 (615)
..|++.|.+.|
T Consensus 450 a~Lk~aA~a~G 460 (681)
T PLN02705 450 QNLRKAAKSRG 460 (681)
T ss_pred HHHHHHHHHhC
Confidence 67788888766
No 19
>PLN00197 beta-amylase; Provisional
Probab=91.12 E-value=0.99 Score=50.96 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=70.6
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----CcCccccc----CCCceeec----CChhh-----
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----GFPVWLHN----IPGIQLRT----NNEIY----- 62 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----GlP~WL~~----~~~~~lRs----~d~~y----- 62 (615)
|++|||+| -.+++++|+++||.+.+-.-=.-|+- .-| -||.|++. +|+|-.-. .|+.|
T Consensus 158 p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~ 233 (573)
T PLN00197 158 PGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGC 233 (573)
T ss_pred CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHHHHhhccCCCceeecCCCCcccceecccc
Confidence 68999999 77778999999999887655555544 222 39999975 45653321 11212
Q ss_pred -----------HHHHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc-----CCCc-----cc-cHHHH
Q 045354 63 -----------KNEMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM-----GPYK-----EA-GKSYI 114 (615)
Q Consensus 63 -----------l~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~-----~~~g-----~~-~~~Ym 114 (615)
++.-..|++..-...+ .++ |+-|.-||| |=-|=||. |.|. .| |+.-+
T Consensus 234 D~~pvl~GRTpiq~Y~DFM~SFr~~F~--~~l---~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml 308 (573)
T PLN00197 234 DTLPVLKGRTPVQCYADFMRAFRDNFK--HLL---GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYML 308 (573)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHH--HHh---cCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHH
Confidence 2334444555545555 443 356999998 66666652 2222 13 44444
Q ss_pred HHHHHHHHhCC
Q 045354 115 NWCAQMATSQN 125 (615)
Q Consensus 115 ~~L~~~~~~~g 125 (615)
..|++.|.+.|
T Consensus 309 ~~L~~aA~~~G 319 (573)
T PLN00197 309 SSLKAAAEAAG 319 (573)
T ss_pred HHHHHHHHHhC
Confidence 56777787765
No 20
>PLN02803 beta-amylase
Probab=90.86 E-value=0.99 Score=50.77 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=70.8
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----CcCccccc----CCCceeec----CChhhH----
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----GFPVWLHN----IPGIQLRT----NNEIYK---- 63 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----GlP~WL~~----~~~~~lRs----~d~~yl---- 63 (615)
|++|||+| -.+++++|+++||.+.+-.-=.-|+- .-| -||.|+.. +|+|-.-. .|..||
T Consensus 138 p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~ 213 (548)
T PLN02803 138 PMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGC 213 (548)
T ss_pred CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceecccc
Confidence 68999999 77788999999999877655454543 222 39999975 46654321 122222
Q ss_pred ------------HHHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc-----CCCc-----cc-cHHHH
Q 045354 64 ------------NEMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM-----GPYK-----EA-GKSYI 114 (615)
Q Consensus 64 ------------~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~-----~~~g-----~~-~~~Ym 114 (615)
+.-..|++..-...+ +++ ||-|.-||| |=-|=||. |.|. .| |+.-+
T Consensus 214 D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l---~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l 288 (548)
T PLN02803 214 DSLPVLRGRTPIQVYSDYMRSFRERFK--DYL---GGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMR 288 (548)
T ss_pred ccchhccCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHH
Confidence 223444555545555 443 579999999 66666652 2222 13 44444
Q ss_pred HHHHHHHHhCC
Q 045354 115 NWCAQMATSQN 125 (615)
Q Consensus 115 ~~L~~~~~~~g 125 (615)
..|++.|.+.|
T Consensus 289 ~~L~~aA~~~G 299 (548)
T PLN02803 289 ASLEASAEAIG 299 (548)
T ss_pred HHHHHHHHHhC
Confidence 56777777654
No 21
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.65 E-value=23 Score=38.93 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=111.3
Q ss_pred cchH-HHHHHHHHHcCcEEEEecCceecc-ccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccC
Q 045354 9 NLDF-IKFFKLVQEAGLYAIIRIGPYVCS-EWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQ 86 (615)
Q Consensus 9 ~~Dl-~~Fl~la~e~GL~VilRpGPYIca-Ew~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~ 86 (615)
.||| .+|.+.|+++||.+-+ |..+ +|.. |.|....+.-..+.+.+.|.++++.|+.+|-+.|.+
T Consensus 126 krDiv~el~~A~rk~Glk~G~----Y~S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~------- 191 (384)
T smart00812 126 KRDLVGELADAVRKRGLKFGL----YHSLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR------- 191 (384)
T ss_pred CcchHHHHHHHHHHcCCeEEE----EcCHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc-------
Confidence 4676 4688889999998877 4443 7764 554321111123456788999999999999888872
Q ss_pred CCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCcc-ceEEecCCC----CCccccccCCCcccCCCCCC-CCC
Q 045354 87 GGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGV-PWIMCQQSD----APQPMINTCNGFYCDEFVPN-NPK 160 (615)
Q Consensus 87 GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~v-P~~~~~~~~----~~~~~~~t~ng~~~~~~~~~-~p~ 160 (615)
=||-|+. .+-..+.. ...--++.|.+++++...+. -.+.++... .+.... ++. +...+. ...
T Consensus 192 Ygpd~lW-fD~~~~~~------~~~~~~~~l~~~~~~~qP~~~~vvvn~R~~~~~~~~g~~~-~~~----e~~~p~~~~~ 259 (384)
T smart00812 192 YKPDLLW-FDGGWEAP------DDYWRSKEFLAWLYNLSPVKDTVVVNDRWGGTGCKHGGFY-TDE----ERGAPGKLLP 259 (384)
T ss_pred CCCceEE-EeCCCCCc------cchhcHHHHHHHHHHhCCCCceEEEEccccccCCCCCCcc-cCc----ccCCCCCCCC
Confidence 2453333 23222110 11112455666666644432 113333211 000000 000 111110 001
Q ss_pred CCce-eeecccccccccCC-CCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 045354 161 SPKM-WTENWTGWFKKWGD-KDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTNFGRDAGGPFIITSYDYDAPLDEYGN 238 (615)
Q Consensus 161 ~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Api~E~G~ 238 (615)
.|-- |+=.-.+|+-+-++ .....+++++...+....++|++++ +| -+.+.+|.
T Consensus 260 ~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ 314 (384)
T smart00812 260 HPWETCTTIGKSWGYRRNESDSDYKSPKELIRDLVDIVSKGGNLL-------------LN------------VGPKADGT 314 (384)
T ss_pred CCcccccccCCCCCcCCCCCcccCCCHHHHHHHHhhhcCCCceEE-------------Ec------------cCCCCCCC
Confidence 1111 11111255554443 2336788999988888888888752 12 34557888
Q ss_pred CCChhHHHHHHHHHHHhhhcccccCCC
Q 045354 239 LNQPKWGHLKQLHEAIKLGEKLLTSGN 265 (615)
Q Consensus 239 ~~~~ky~~lr~l~~~~~~~~~~l~~~~ 265 (615)
+....-..|++++.+++..++.+-.+.
T Consensus 315 ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 315 IPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred CCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 877788899999999988766554443
No 22
>PLN02905 beta-amylase
Probab=90.42 E-value=1.3 Score=50.55 Aligned_cols=118 Identities=18% Similarity=0.341 Sum_probs=70.8
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----CcCccccc----CCCceeecC----Ch-------
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----GFPVWLHN----IPGIQLRTN----NE------- 60 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----GlP~WL~~----~~~~~lRs~----d~------- 60 (615)
|++|||+| -.++++||+++||.+.+-.-=.-|+- .-| -||.|++. .|+|-.-.. |+
T Consensus 317 P~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~ 392 (702)
T PLN02905 317 PQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGI 392 (702)
T ss_pred CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeec
Confidence 68999999 77788999999999877655555544 222 39999975 456533210 11
Q ss_pred ---------hhHHHHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc----CCCc-----cc-cHHHHH
Q 045354 61 ---------IYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM----GPYK-----EA-GKSYIN 115 (615)
Q Consensus 61 ---------~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~----~~~g-----~~-~~~Ym~ 115 (615)
.-++.-..|++..-...+ .++ .+|-|.-||| |=-|=||. |.|. .| |+.-+.
T Consensus 393 D~~pvl~GRTplq~Y~DFM~SFr~~F~--~fl--~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla 468 (702)
T PLN02905 393 DKERILRGRTALEVYFDYMRSFRVEFD--EFF--EDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLK 468 (702)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHH--HHh--cCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHH
Confidence 122333444444444444 332 3578999998 55566652 2221 13 444446
Q ss_pred HHHHHHHhCCC
Q 045354 116 WCAQMATSQNI 126 (615)
Q Consensus 116 ~L~~~~~~~gi 126 (615)
.|++.|.+.|-
T Consensus 469 ~Lk~aA~a~Gh 479 (702)
T PLN02905 469 SLRKAAEARGH 479 (702)
T ss_pred HHHHHHHHhCc
Confidence 77778877664
No 23
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=89.66 E-value=2.1 Score=45.48 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=82.6
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
+|.|+|+. -++..+.|+++||-+- ==+.| |-+ =.|.||..+. -+-++.++.|++|+..++.+.+
T Consensus 76 ~G~f~Fe~---AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~~~~~~~~e~hI~tV~~rYk-- 139 (345)
T COG3693 76 RGRFNFEA---ADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSKEALAKMVEEHIKTVVGRYK-- 139 (345)
T ss_pred CCccCccc---hHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cChHHHHHHHHHHHHHHHHhcc--
Confidence 58899997 5567788999999653 22333 555 6788887633 3456789999999999988776
Q ss_pred CccccCCCceEEEeeccccccc-------cCCCccccHHHHHHHHHHHHhCCCccceEEecC
Q 045354 81 NLFAPQGGPIILAQIENEYGNI-------MGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQ 135 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~-------~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~ 135 (615)
|-|+.+-|=||-=+. .|..+..+.+||++.-+.||+++-+--++.|+-
T Consensus 140 -------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY 194 (345)
T COG3693 140 -------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDY 194 (345)
T ss_pred -------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecc
Confidence 348999999995321 122223578999999999999888888998874
No 24
>PLN02801 beta-amylase
Probab=86.57 E-value=2.9 Score=46.89 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=70.6
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----CcCccccc----CCCceee--c--CChhhHH---
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----GFPVWLHN----IPGIQLR--T--NNEIYKN--- 64 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----GlP~WL~~----~~~~~lR--s--~d~~yl~--- 64 (615)
|++|||+| -.+++++++++||.+.+-.-=.-|+- .-| -||.|+.. +|+|-.- + .|+.||.
T Consensus 68 P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~ 143 (517)
T PLN02801 68 PKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGV 143 (517)
T ss_pred CCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeecc
Confidence 68999999 77778999999999877655454543 222 39999974 4665322 1 1333333
Q ss_pred -------------HHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc----CCCc-----cc-cHHHHH
Q 045354 65 -------------EMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM----GPYK-----EA-GKSYIN 115 (615)
Q Consensus 65 -------------~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~----~~~g-----~~-~~~Ym~ 115 (615)
.-..|++..-...+ .++ .+|-|.-||| |=-|=||. |.|. .| |+.-+.
T Consensus 144 D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l--~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~ 219 (517)
T PLN02801 144 DNLPLFHGRTAVEMYSDYMKSFRENMA--DFL--EAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKA 219 (517)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHH
Confidence 22334444444444 332 3578999998 66666652 2221 13 444446
Q ss_pred HHHHHHHhCC
Q 045354 116 WCAQMATSQN 125 (615)
Q Consensus 116 ~L~~~~~~~g 125 (615)
.|++.|.+.|
T Consensus 220 ~l~~aA~~~G 229 (517)
T PLN02801 220 DFKEAATEAG 229 (517)
T ss_pred HHHHHHHhcC
Confidence 7788888776
No 25
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=86.40 E-value=1.4 Score=47.12 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=79.3
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
+|+|||+ ..+++++.|++.||.|--- +-| |.. ..|.|+...+... ....+...+.++++++.++...+
T Consensus 53 ~g~~~~~---~~D~~~~~a~~~g~~vrGH--~Lv---W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~-- 120 (320)
T PF00331_consen 53 PGRFNFE---SADAILDWARENGIKVRGH--TLV---WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYK-- 120 (320)
T ss_dssp TTBEE-H---HHHHHHHHHHHTT-EEEEE--EEE---ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCccCcc---chhHHHHHHHhcCcceeee--eEE---Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhc--
Confidence 5889998 4899999999999988633 222 655 8899997641100 00023478899999999887765
Q ss_pred CccccCCCceEEEeeccccccccC---------CCccccHHHHHHHHHHHHhCCCccceEEecC
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMG---------PYKEAGKSYINWCAQMATSQNIGVPWIMCQQ 135 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~---------~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~ 135 (615)
+-|.|.++=|=||==.... .+..-+.+|+...-++|++...++.||.|+-
T Consensus 121 -----~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 121 -----DKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp -----TTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred -----cccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 1189999999999432110 0111245799999999999888899999885
No 26
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=78.56 E-value=11 Score=46.80 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=101.5
Q ss_pred HHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCCceEE
Q 045354 13 IKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGPIIL 92 (615)
Q Consensus 13 ~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~ 92 (615)
.+|+++|-|.||+|+--. |..|.-|.. . .+...-+++|.|.++. .+++-.+|++ . .|.-.|||
T Consensus 381 ~~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~---~~~~~~mV~R--d--rNHPSIi~ 443 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVY---VDRIVRHIHA--Q--KNHPSIII 443 (1021)
T ss_pred HHHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHH---HHHHHHHHHh--C--CCCCEEEE
Confidence 579999999999999864 333322211 0 0111124677776543 3334445552 1 46668999
Q ss_pred EeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEecCCCC--CccccccCCCcc--cCCCCCCCCCCCceeeec
Q 045354 93 AQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQSDA--PQPMINTCNGFY--CDEFVPNNPKSPKMWTEN 168 (615)
Q Consensus 93 vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~~~~--~~~~~~t~ng~~--~~~~~~~~p~~P~~~~E~ 168 (615)
.=+=||-+. |. .++.+.+.+++..-.-|+ +..+... ..+++...-+.. ...+....+++|++.+|+
T Consensus 444 WslGNE~~~-----g~----~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 444 WSLGNESGY-----GC----NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred EECccCccc-----cH----HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 999999752 31 346777888876655554 3322110 111221110000 012223335799999998
Q ss_pred ccccccccCCCCCCCChHHHHHHHHH-----------HHHcC-----CceeeeeeeecCCCCCCCCCCCCccccCCCCCC
Q 045354 169 WTGWFKKWGDKDPHRTPQDVSFAVAR-----------FFQAG-----GVLQNYYMYHGGTNFGRDAGGPFIITSYDYDAP 232 (615)
Q Consensus 169 ~~Gwf~~wG~~~~~~~~~~~~~~~~~-----------~l~~g-----~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Ap 232 (615)
--+. |.. ....++.-..+.+ +...| ... .-|+.+|| .||-+. . ..++--+..
T Consensus 514 ~ham----gn~--~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygG-d~g~~p---~-~~~f~~~Gl 581 (1021)
T PRK10340 514 AHAM----GNG--PGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGG-DYGDYP---N-NYNFCIDGL 581 (1021)
T ss_pred Hhcc----CCC--CCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECC-CCCCCC---C-CcCccccee
Confidence 4221 110 0011222221111 00000 000 12445555 244221 1 122333477
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh
Q 045354 233 LDEYGNLNQPKWGHLKQLHEAIK 255 (615)
Q Consensus 233 i~E~G~~~~~ky~~lr~l~~~~~ 255 (615)
++.+|.+ .|.|.++|.+.+-++
T Consensus 582 v~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 582 IYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred ECCCCCC-ChhHHHHHHhcceEE
Confidence 8899986 899999999876443
No 27
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.24 E-value=4.2 Score=34.77 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=35.6
Q ss_pred CeeeEeCCcceEEEEEECCEEEEEEEcceeeeeeeeee-CCCccEEEEEEeccCcc
Q 045354 405 NATLYVKSSGQVLHAYVNSKHIGSQFGYDFEFKQPAIL-RPGKNFLTLLSATVGLQ 459 (615)
Q Consensus 405 ~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~i~l-~~g~~~L~ILvEnmGRv 459 (615)
...|++.+-...++-||||+++|...... ++...+ ..|.++|++ ++..||.
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFWQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEeCCCCCeeEEEEE-EcCCCCE
Confidence 34455554466999999999998776542 233344 668888887 8888874
No 28
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=75.74 E-value=5.6 Score=37.05 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=42.8
Q ss_pred chH-HHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCce-e------------ecCChhhHHHHHHHHHHHHH
Q 045354 10 LDF-IKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQ-L------------RTNNEIYKNEMQIFTTKIVN 75 (615)
Q Consensus 10 ~Dl-~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~-l------------Rs~d~~yl~~v~~~~~~l~~ 75 (615)
+|| .+++++|++.||.|++|...- --|+-.-=-|.|+...++-+ . =..|..|++.+.+-+++|+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILD 121 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHH
Confidence 455 889999999999999997665 33444556799998654322 1 12355677655555555443
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=71.87 E-value=6.2 Score=43.40 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=60.5
Q ss_pred CceeeccCcchHHHHHHHHHHcCcEEEEecCceeccc----cCCCCcCccccc---CCCceee--c------------CC
Q 045354 1 GDQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSE----WNYGGFPVWLHN---IPGIQLR--T------------NN 59 (615)
Q Consensus 1 ~G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaE----w~~GGlP~WL~~---~~~~~lR--s------------~d 59 (615)
|++|||+| -.++.++|+++||.+.+-.-=.-|+- .-+=-||.|+.. ..+|... + ..
T Consensus 47 p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~g 123 (402)
T PF01373_consen 47 PQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDG 123 (402)
T ss_dssp TTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTT
T ss_pred CCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHHHhccccCCcEEECCCCCcCcceeecccCC
Confidence 68999999 77888999999999887654444421 111258999973 2255221 1 12
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCccccCCCceEEEee------cccccccc----CCCc-----cc-cHHHHHHHHHHHH
Q 045354 60 EIYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQI------ENEYGNIM----GPYK-----EA-GKSYINWCAQMAT 122 (615)
Q Consensus 60 ~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQi------ENEyg~~~----~~~g-----~~-~~~Ym~~L~~~~~ 122 (615)
.. ++.-..|++......+ .+. +-|..||| |=.|-||. |.|. .| |+.-++.|++.|+
T Consensus 124 rt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~ 195 (402)
T PF01373_consen 124 RT-LQCYSDFMRSFRDNFS--DYL----STITEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAE 195 (402)
T ss_dssp BC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHHH--HHH----hhheEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHH
Confidence 23 6666677777777766 443 68888887 44444432 1121 12 4444566777776
No 30
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=71.81 E-value=4.7 Score=32.79 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=28.3
Q ss_pred eeEeCCcceEEEEEECCEEEEEEEcceeeeeeeeeeCCCccEEEEEEeccCcccc
Q 045354 407 TLYVKSSGQVLHAYVNSKHIGSQFGYDFEFKQPAILRPGKNFLTLLSATVGLQNY 461 (615)
Q Consensus 407 ~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~i~l~~g~~~L~ILvEnmGRvNy 461 (615)
.|.|.+.=.-|.|||||+++|... .++. .++.|.++|. ++.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-----~~~~-~l~~G~~~v~--v~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-----LTLK-DLPPGEHTVT--VEKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-----ceee-ecCCccEEEE--EEECCCeeE
Confidence 455655556789999999999322 1111 1556765554 455565544
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.15 E-value=30 Score=42.97 Aligned_cols=91 Identities=20% Similarity=0.298 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCcEEEEecCceeccccCCCCc-CcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCCceE
Q 045354 13 IKFFKLVQEAGLYAIIRIGPYVCSEWNYGGF-PVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGPII 91 (615)
Q Consensus 13 ~~Fl~la~e~GL~VilRpGPYIcaEw~~GGl-P~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII 91 (615)
.+|+++|-|.||+|+--.. . | .-|+ |. . .+ .+||.|++++. +++..+|++ . .|.-.||
T Consensus 397 p~fydlcDe~GilV~dE~~-~---e--~hg~~~~---~----~~-~~dp~~~~~~~---~~~~~mV~R--d--rNHPSIi 455 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEAN-I---E--THGMVPM---N----RL-SDDPRWLPAMS---ERVTRMVQR--D--RNHPSII 455 (1027)
T ss_pred HHHHHHHHHcCCEEEEecC-c---c--ccCCccc---c----CC-CCCHHHHHHHH---HHHHHHHHh--C--CCCCEEE
Confidence 5799999999999987632 1 1 1111 11 0 01 45788876554 445555552 1 4566899
Q ss_pred EEeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEe
Q 045354 92 LAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMC 133 (615)
Q Consensus 92 ~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~ 133 (615)
|.=+=||-+. + ..++.+.+.+++..-.-|....
T Consensus 456 ~WSlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 456 IWSLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred EEeCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999999652 2 2356677777776655565544
No 32
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=65.21 E-value=13 Score=30.32 Aligned_cols=22 Identities=14% Similarity=0.367 Sum_probs=19.5
Q ss_pred CcceEEEEEECCEEEEEEEcce
Q 045354 412 SSGQVLHAYVNSKHIGSQFGYD 433 (615)
Q Consensus 412 ~~~D~a~Vfvng~~~G~~~~~~ 433 (615)
...|.|-||++++++|++++..
T Consensus 25 k~~dsaEV~~g~EfiGvi~~De 46 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDE 46 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeec
Confidence 4689999999999999999864
No 33
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=59.34 E-value=72 Score=34.12 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=52.1
Q ss_pred eeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCCh--hhHHH-HHHHHHHHHHHHHhc
Q 045354 4 YDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNE--IYKNE-MQIFTTKIVNMCKEA 80 (615)
Q Consensus 4 ~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~--~yl~~-v~~~~~~l~~~i~~~ 80 (615)
|.-.-..|=++++++.+++|+|||+-.+ .|+..+-..+| .|-.. .++|+ +++...+++
T Consensus 73 Y~vdp~~nHd~CM~~~~~aGIYvi~Dl~------------------~p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y 133 (314)
T PF03198_consen 73 YSVDPSKNHDECMSAFADAGIYVILDLN------------------TPNGSINRSDPAPSWNTDLLDRYF-AVIDAFAKY 133 (314)
T ss_dssp S---TTS--HHHHHHHHHTT-EEEEES-------------------BTTBS--TTS------HHHHHHHH-HHHHHHTT-
T ss_pred EEeCCCCCHHHHHHHHHhCCCEEEEecC------------------CCCccccCCCCcCCCCHHHHHHHH-HHHHHhccC
Confidence 4444557888999999999999999855 22334555566 66433 34443 344666632
Q ss_pred CccccCCCceEEEeeccccccccCCC--ccccHHHHHHHHHHHHhCCC-ccce
Q 045354 81 NLFAPQGGPIILAQIENEYGNIMGPY--KEAGKSYINWCAQMATSQNI-GVPW 130 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg~~~~~~--g~~~~~Ym~~L~~~~~~~gi-~vP~ 130 (615)
-+++++=+=||--.-...- .+.-|+.++-+|+-+++.+. .+|+
T Consensus 134 -------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 3899999999975321100 11235566666776777666 4453
No 34
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=58.59 E-value=29 Score=41.85 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCCceE
Q 045354 12 FIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGPII 91 (615)
Q Consensus 12 l~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII 91 (615)
=..|++||-+.||+||--. ..||-.+ | +||.|++.+..=.++++.+.+ |.--||
T Consensus 346 ~~~~ydLcDelGllV~~Ea----~~~~~~~--~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIi 399 (808)
T COG3250 346 SEEFYDLCDELGLLVIDEA----MIETHGM--P-------------DDPEWRKEVSEEVRRMVERDR-------NHPSII 399 (808)
T ss_pred CHHHHHHHHHhCcEEEEec----chhhcCC--C-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEE
Confidence 3679999999999999762 2222222 1 788899888766666666555 445899
Q ss_pred EEeeccccccccCCCccccHHHHHHHHHH
Q 045354 92 LAQIENEYGNIMGPYKEAGKSYINWCAQM 120 (615)
Q Consensus 92 ~vQiENEyg~~~~~~g~~~~~Ym~~L~~~ 120 (615)
|.=+-||-|. |.....-..|.++.
T Consensus 400 iWs~gNE~~~-----g~~~~~~~~~~k~~ 423 (808)
T COG3250 400 IWSLGNESGH-----GSNHWALYRWFKAS 423 (808)
T ss_pred EEeccccccC-----ccccHHHHHHHhhc
Confidence 9999999774 33344344454444
No 35
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=53.60 E-value=3.2e+02 Score=29.48 Aligned_cols=202 Identities=10% Similarity=0.060 Sum_probs=93.1
Q ss_pred CcchH-HHHHHHHHHcCcEEEEecCceec-cccCCCCcCcccccCCCceeecCChhhHHHHH-HHHHHHHHHHHhcCccc
Q 045354 8 GNLDF-IKFFKLVQEAGLYAIIRIGPYVC-SEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQ-IFTTKIVNMCKEANLFA 84 (615)
Q Consensus 8 G~~Dl-~~Fl~la~e~GL~VilRpGPYIc-aEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~-~~~~~l~~~i~~~~l~~ 84 (615)
+.+|| .+|.+.|+++||.+-+ |.+ ++|.....+.-...... ......+.+-+.++ .|+.+|-+.+.++++
T Consensus 135 ~krDiv~El~~A~rk~Glk~G~----Y~S~~dw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~-- 207 (346)
T PF01120_consen 135 PKRDIVGELADACRKYGLKFGL----YYSPWDWHHPDYPPDEEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYKP-- 207 (346)
T ss_dssp GTS-HHHHHHHHHHHTT-EEEE----EEESSSCCCTTTTSSCHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCSTE--
T ss_pred CCCCHHHHHHHHHHHcCCeEEE----EecchHhcCcccCCCccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCCc--
Confidence 34675 5689999999999888 443 47776555433321100 01223445555566 555666555553311
Q ss_pred cCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCccceEEecCCCCCcc-ccccCCCcccCCCCCC-CCCCC
Q 045354 85 PQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVPWIMCQQSDAPQP-MINTCNGFYCDEFVPN-NPKSP 162 (615)
Q Consensus 85 ~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP~~~~~~~~~~~~-~~~t~ng~~~~~~~~~-~p~~P 162 (615)
=++. .+--... .....-+..+.+++|+..-++-+........... -+.+. +...+. ....|
T Consensus 208 -----d~lW-fDg~~~~------~~~~~~~~~~~~~i~~~qp~~ii~~r~~~~~~~~~d~~~~-----E~~~~~~~~~~p 270 (346)
T PF01120_consen 208 -----DILW-FDGGWPD------PDEDWDSAELYNWIRKLQPDVIINNRWGGNEQGDGDYNTP-----ERGIPGEIQGRP 270 (346)
T ss_dssp -----SEEE-EESTTSC------CCTHHHHHHHHHHHHHHSTTSEEECCCSSCSSCCBSCCEE-----CTTBTTTEEESE
T ss_pred -----ceEE-ecCCCCc------cccccCHHHHHHHHHHhCCeEEEecccCCCCCccccccch-----hccCCCCCCCCC
Confidence 1111 1111110 1122233677777777655443332211111000 00000 111100 01112
Q ss_pred cee-eecccccccccCCCCCCCChHHHHHHHHHHHHcCCceeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045354 163 KMW-TENWTGWFKKWGDKDPHRTPQDVSFAVARFFQAGGVLQNYYMYHGGTNFGRDAGGPFIITSYDYDAPLDEYGNLNQ 241 (615)
Q Consensus 163 ~~~-~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Api~E~G~~~~ 241 (615)
--. +=.-.+||-. -.....++++.+...+.+..++|++++ + | -+.+.+|.+..
T Consensus 271 wE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ngnlL---L----------N------------igP~~dG~ip~ 324 (346)
T PF01120_consen 271 WETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNGNLL---L----------N------------IGPDPDGTIPE 324 (346)
T ss_dssp EEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTEEEE---E----------E------------E---TTSS--H
T ss_pred ccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCceEE---E----------e------------cCCCCCCCcCH
Confidence 111 1122345430 112344678888888888888887752 1 1 34457888878
Q ss_pred hhHHHHHHHHHHHhhhcc
Q 045354 242 PKWGHLKQLHEAIKLGEK 259 (615)
Q Consensus 242 ~ky~~lr~l~~~~~~~~~ 259 (615)
+--..|++++..|+..++
T Consensus 325 ~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 325 EQVERLREIGDWLKVNGE 342 (346)
T ss_dssp HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 888899999999987544
No 36
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.37 E-value=7.6 Score=44.90 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=28.5
Q ss_pred ccccCCCCCCCCCCCCCCChhHHHHHHHH-HHHhh
Q 045354 223 IITSYDYDAPLDEYGNLNQPKWGHLKQLH-EAIKL 256 (615)
Q Consensus 223 ~~tSYDy~Api~E~G~~~~~ky~~lr~l~-~~~~~ 256 (615)
++|||||+||+.|+|+++++||.++|+.. .|++.
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n 359 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREACAAFLSN 359 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHHHHHHhc
Confidence 69999999999999998899999999543 44443
No 37
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.92 E-value=1e+02 Score=31.38 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=44.7
Q ss_pred ceeecc-CcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhc
Q 045354 2 DQYDFS-GNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEA 80 (615)
Q Consensus 2 G~~dF~-G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~ 80 (615)
|...+. +..++..+++.|++.|+.|++..| .|..+.+-. + + .++. .-+++.+.|...++++
T Consensus 37 G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~~-~-------~--~~~~---~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 37 GTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFTA-A-------L--NDPA---KRKALVDKIINYVVSY 98 (253)
T ss_pred CeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcchh-h-------h--cCHH---HHHHHHHHHHHHHHHh
Confidence 334443 335788999999999999999987 122222110 1 1 1222 3467888888888866
Q ss_pred CccccCCCceEEEeeccccc
Q 045354 81 NLFAPQGGPIILAQIENEYG 100 (615)
Q Consensus 81 ~l~~~~GGpII~vQiENEyg 100 (615)
++ .| +-|+=||.
T Consensus 99 ~~----DG----IdiDwE~~ 110 (253)
T cd06545 99 NL----DG----IDVDLEGP 110 (253)
T ss_pred CC----Cc----eeEEeecc
Confidence 55 23 45555664
No 38
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=45.42 E-value=18 Score=38.82 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 045354 10 LDFIKFFKLVQEAGLYAIIRI 30 (615)
Q Consensus 10 ~Dl~~Fl~la~e~GL~VilRp 30 (615)
.|+.++++.++|+|+|+|.|+
T Consensus 61 ~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 61 KDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred cCHHHHHHHHHHCCCEEEEEE
Confidence 799999999999999999994
No 39
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=45.22 E-value=39 Score=35.24 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=40.9
Q ss_pred ccchhhhccCC---CCCcceEEEEEeeccCCCC-----CCCeeeEeCCcceEEEEEECCEEEEEEEc
Q 045354 373 ATKLIEQKEAT---SDESDYLWYMTSIENMGKS-----SHNATLYVKSSGQVLHAYVNSKHIGSQFG 431 (615)
Q Consensus 373 ~p~~mEql~~t---~~~~GyvlY~T~i~~~~~~-----~~~~~L~v~~~~D~a~Vfvng~~~G~~~~ 431 (615)
.|.++-.+++. +|-+|.+||+-+|.. ..+ .+...|++.++|-.|.|+|||.-+=...+
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~v-pe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTV-PESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEc-chhhhhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 34456666663 568899999998855 211 14567889999999999999986544333
No 40
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=44.56 E-value=16 Score=38.57 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 045354 10 LDFIKFFKLVQEAGLYAIIRI 30 (615)
Q Consensus 10 ~Dl~~Fl~la~e~GL~VilRp 30 (615)
.|+..||+-|+|.|||+|.|+
T Consensus 124 ~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 124 KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred cccHHHHHHHHhcCeEEEEEE
Confidence 689999999999999999995
No 41
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.68 E-value=1.7e+02 Score=30.05 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=61.9
Q ss_pred ceee--ccCcchHHHHHHHHHHcCcEEE-EecCceec----cc------------cCCCCcCc---ccccCCCceeecCC
Q 045354 2 DQYD--FSGNLDFIKFFKLVQEAGLYAI-IRIGPYVC----SE------------WNYGGFPV---WLHNIPGIQLRTNN 59 (615)
Q Consensus 2 G~~d--F~G~~Dl~~Fl~la~e~GL~Vi-lRpGPYIc----aE------------w~~GGlP~---WL~~~~~~~lRs~d 59 (615)
|.|. |.....+.+.++++++.|..-| +.++++-| .+ .+--|+.- ++...-...+-+.|
T Consensus 6 ~~~~~~~~~~~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~ 85 (279)
T TIGR00542 6 GIYEKALPKGECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKD 85 (279)
T ss_pred ceehhhCCCCCCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcC
Confidence 4454 4456889999999999999866 66555422 11 12222221 00000001122336
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCccccCCCceEEEeeccccccccCCCccc-------cHHHHHHHHHHHHhCCCcc
Q 045354 60 EIYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYKEA-------GKSYINWCAQMATSQNIGV 128 (615)
Q Consensus 60 ~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~~-------~~~Ym~~L~~~~~~~gi~v 128 (615)
+.-.++..+.+++.+...+ .+ |.++|.+- ..++. ++.. -.+.|+.|.+.|++.|+.+
T Consensus 86 ~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 86 KAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 6666666677777777776 33 67877652 11110 1111 2356677777788888865
No 42
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=43.47 E-value=50 Score=30.78 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccC-CCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCCC
Q 045354 10 LDFIKFFKLVQEAGLYAIIRIGPYVCSEWN-YGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGG 88 (615)
Q Consensus 10 ~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~-~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GG 88 (615)
.||+.||++|+|.|+.|++=.=| |++.|- .=|+| .+.-++++++|-.++++ .|-
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~------~gf 90 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS------QGF 90 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT------TT-
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH------CCC
Confidence 69999999999999998876555 333332 22332 45668899999888883 455
Q ss_pred ceEEE
Q 045354 89 PIILA 93 (615)
Q Consensus 89 pII~v 93 (615)
.|+=+
T Consensus 91 ~v~D~ 95 (130)
T PF04914_consen 91 NVADF 95 (130)
T ss_dssp -EEE-
T ss_pred EEEec
Confidence 55544
No 43
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=41.67 E-value=49 Score=29.70 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=25.1
Q ss_pred HHHHHHHHh-cCccccCCCceEEEeeccccccccCCCccccHHHHHHHHHH
Q 045354 71 TKIVNMCKE-ANLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQM 120 (615)
Q Consensus 71 ~~l~~~i~~-~~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~ 120 (615)
.+|...|+. ||+... -||.++|+| | .++||+||.+-
T Consensus 66 ~~l~~~ikelHpYevP---eIi~i~v~~--g---------~~eYL~Wl~~~ 102 (104)
T COG1324 66 EELIERIKELHPYEVP---EIIALPVDN--G---------LPEYLEWLNEE 102 (104)
T ss_pred HHHHHHHHHhCCCCCc---eEEEEEecc--C---------CHHHHHHHHHh
Confidence 345555554 566554 699999987 3 47899999874
No 44
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.63 E-value=1.3e+02 Score=27.19 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=39.8
Q ss_pred eEEEEEeeccCCCCCCCeeeEeCCcceEEEEEECCEEEEEEEcce---------eeeeeeeeeCC-CccEEEEEEeccCc
Q 045354 389 YLWYMTSIENMGKSSHNATLYVKSSGQVLHAYVNSKHIGSQFGYD---------FEFKQPAILRP-GKNFLTLLSATVGL 458 (615)
Q Consensus 389 yvlY~T~i~~~~~~~~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~---------~~~~~~i~l~~-g~~~L~ILvEnmGR 458 (615)
.+.|++.|.. .. ....++.+. ..|.+.+||||+.+-...+.. ...+..+.+.+ +.+.|+|...+.+.
T Consensus 47 ~~~~~G~~~~-~~-~G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 47 SVRWTGYFKP-PE-TGTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEEEEEEEE-SS-SEEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEEEEEEEec-cc-CceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 4568888865 21 122334444 678999999999997665421 23334455554 46788887755543
No 45
>PRK05402 glycogen branching enzyme; Provisional
Probab=34.93 E-value=2.8e+02 Score=33.22 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.6
Q ss_pred ccCcchHHHHHHHHHHcCcEEEEe
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAIIR 29 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~VilR 29 (615)
|.+..||++|++.|++.||.|||-
T Consensus 311 ~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 311 FGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456689999999999999999987
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=33.91 E-value=36 Score=32.77 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.5
Q ss_pred ccCcchHHHHHHHHHHcCcEEEEecCceeccc
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSE 37 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaE 37 (615)
|....|+++|++.|+++||.||+-.=|==++.
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45668999999999999999999876655555
No 47
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=33.36 E-value=72 Score=30.81 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=30.1
Q ss_pred eeEeCCcceEEEEEECCEEEEEEE--------cce---eeeeeeeeeCCCccEEEEEEeccCc
Q 045354 407 TLYVKSSGQVLHAYVNSKHIGSQF--------GYD---FEFKQPAILRPGKNFLTLLSATVGL 458 (615)
Q Consensus 407 ~L~v~~~~D~a~Vfvng~~~G~~~--------~~~---~~~~~~i~l~~g~~~L~ILvEnmGR 458 (615)
.|.|.. ..+..+||||+.||.-. ... .++.++--|+.|.|+|.|+|-+...
T Consensus 7 ~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 7 RLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 444442 34778999999998643 111 3444443477899999999976443
No 48
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.19 E-value=15 Score=35.92 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.9
Q ss_pred eeeccCcchHHHHHHHHHHcCcEEEEe
Q 045354 3 QYDFSGNLDFIKFFKLVQEAGLYAIIR 29 (615)
Q Consensus 3 ~~dF~G~~Dl~~Fl~la~e~GL~VilR 29 (615)
-|||-..-+|+.|+++|+++||.+-|-
T Consensus 160 lFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 160 LFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred HHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 489988899999999999999987654
No 49
>TIGR03356 BGL beta-galactosidase.
Probab=30.86 E-value=32 Score=38.34 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=43.2
Q ss_pred ceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHH
Q 045354 2 DQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMC 77 (615)
Q Consensus 2 G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i 77 (615)
|++|.+|-.=.+++|+.|.++||-+|+-.=. =.+|.||....|..=|..-..|.++++.-++++...|
T Consensus 86 ~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v 153 (427)
T TIGR03356 86 GPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRV 153 (427)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcC
Confidence 4556666666789999999999999987432 3489999765543222222445555555555544443
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=30.73 E-value=97 Score=33.01 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCcEEEEecCceeccccCC----CCcCcccc-cCCCceeec----C-----ChhhHHHHHHHHHHHHHH
Q 045354 11 DFIKFFKLVQEAGLYAIIRIGPYVCSEWNY----GGFPVWLH-NIPGIQLRT----N-----NEIYKNEMQIFTTKIVNM 76 (615)
Q Consensus 11 Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~----GGlP~WL~-~~~~~~lRs----~-----d~~yl~~v~~~~~~l~~~ 76 (615)
=|+.+|+.|++.||-|+.-. .+-..--.. ---|.|+. +.++..... . ||+ ..+|+.|+..++..
T Consensus 71 pL~~~I~eaHkrGlevHAW~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~-~PeVr~~i~~~v~E 148 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWF-RVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPG-HPEVRDYIIDIVKE 148 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEE-EeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCC-CHHHHHHHHHHHHH
Confidence 38899999999999999655 111110111 12478876 445533332 1 333 56899998888887
Q ss_pred HHhcCccccCCCceEEEeecc
Q 045354 77 CKEANLFAPQGGPIILAQIEN 97 (615)
Q Consensus 77 i~~~~l~~~~GGpII~vQiEN 97 (615)
|.+ .+ +|=+||++.
T Consensus 149 iv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 149 IVK-NY------DVDGIHLDD 162 (311)
T ss_pred HHh-cC------CCCeEEecc
Confidence 763 22 456788873
No 51
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=30.39 E-value=37 Score=34.63 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=21.9
Q ss_pred ccCcchHHHHHHHHHHcCcEEEEecC
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAIIRIG 31 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~VilRpG 31 (615)
|....|++++++.|++.||.|||-.=
T Consensus 48 ~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 48 FGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp TBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cchhhhhhhhhhccccccceEEEeee
Confidence 34568999999999999999998643
No 52
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=28.79 E-value=58 Score=29.02 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHcCcEEEEecC-ceecc
Q 045354 9 NLDFIKFFKLVQEAGLYAIIRIG-PYVCS 36 (615)
Q Consensus 9 ~~Dl~~Fl~la~e~GL~VilRpG-PYIca 36 (615)
+.|+++.+.||+|.|.-|...|. ||-|.
T Consensus 66 ~pd~~Hl~~LA~ekgVpVe~~~d~~Y~a~ 94 (100)
T PF15608_consen 66 DPDLAHLLLLAEEKGVPVEVYPDLPYSAC 94 (100)
T ss_pred CccHHHHHHHHHHcCCcEEEeCCCCeEEE
Confidence 47999999999999999999998 88874
No 53
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=28.67 E-value=1.5e+02 Score=24.86 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=34.3
Q ss_pred EEEEeeccCCCCCCCeeeEeCCcceEEEEEECCEEEEEEEcceeeeeeeeeeCCCccE-EEEEEe
Q 045354 391 WYMTSIENMGKSSHNATLYVKSSGQVLHAYVNSKHIGSQFGYDFEFKQPAILRPGKNF-LTLLSA 454 (615)
Q Consensus 391 lY~T~i~~~~~~~~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~i~l~~g~~~-L~ILvE 454 (615)
=|+..|+. + .....+........+.|.|||..+... .....++|..|.+. +.|-|.
T Consensus 15 ~Y~~~V~~-~--~~~v~v~a~~~~~~a~v~vng~~~~~~-----~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 15 EYTVTVPN-D--VDSVTVTATPEDSGATVTVNGVPVNSG-----GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEEECC-C--ceEEEEEEEECCCCEEEEEcCEEccCC-----CcceeeEccCCCceEEEEEEE
Confidence 36777765 2 123344444446789999999876432 12234456678888 888884
No 54
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=27.20 E-value=2.7e+02 Score=24.57 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=39.4
Q ss_pred ceEEEE-EeeccCCCCCCCeeeE--eCCc-c-eEEEEEECC---EEEEEEEcce-------eeeeeeeeeCCCccEEEEE
Q 045354 388 DYLWYM-TSIENMGKSSHNATLY--VKSS-G-QVLHAYVNS---KHIGSQFGYD-------FEFKQPAILRPGKNFLTLL 452 (615)
Q Consensus 388 GyvlY~-T~i~~~~~~~~~~~L~--v~~~-~-D~a~Vfvng---~~~G~~~~~~-------~~~~~~i~l~~g~~~L~IL 452 (615)
+++-|+ -.++. .....|. +... . -++.|+||+ +.++++.-.. .+.+.++.+.+|.|+|.|.
T Consensus 32 ~~~~~~~Vd~~~----~g~y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~ 107 (125)
T PF03422_consen 32 DWIEYNNVDVPE----AGTYTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLV 107 (125)
T ss_dssp TEEEEEEEEESS----SEEEEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEE
T ss_pred CEEEEEEEeeCC----CceEEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEE
Confidence 578887 55543 1122343 2222 2 478999998 9999886421 3445667777788888886
Q ss_pred Eec
Q 045354 453 SAT 455 (615)
Q Consensus 453 vEn 455 (615)
...
T Consensus 108 ~~~ 110 (125)
T PF03422_consen 108 FNG 110 (125)
T ss_dssp ESS
T ss_pred EEC
Confidence 644
No 55
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.44 E-value=1.7e+02 Score=31.33 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHH---HcCcEEEEecCceeccccCCCCcCcccc-----cCCCceeecCChhhHHHHHHHHHHHHHHHHh
Q 045354 8 GNLDFIKFFKLVQ---EAGLYAIIRIGPYVCSEWNYGGFPVWLH-----NIPGIQLRTNNEIYKNEMQIFTTKIVNMCKE 79 (615)
Q Consensus 8 G~~Dl~~Fl~la~---e~GL~VilRpGPYIcaEw~~GGlP~WL~-----~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~ 79 (615)
|+.|+.+-|++|| ..||.|++-- - +-+|.. ++|....--+-..-.+++-.|-+..+..+++
T Consensus 99 GnnD~~k~ieiakRAk~~GmKVl~dF--------H---YSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~ 167 (403)
T COG3867 99 GNNDLKKAIEIAKRAKNLGMKVLLDF--------H---YSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK 167 (403)
T ss_pred CcchHHHHHHHHHHHHhcCcEEEeec--------c---chhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999985 4699999872 1 112221 1222222233445567888888888888885
Q ss_pred cCccccCCCceEEEeeccccc-cccCCCc
Q 045354 80 ANLFAPQGGPIILAQIENEYG-NIMGPYK 107 (615)
Q Consensus 80 ~~l~~~~GGpII~vQiENEyg-~~~~~~g 107 (615)
++ =-+=||||-||-. .+-|..|
T Consensus 168 eG------i~pdmVQVGNEtn~gflwp~G 190 (403)
T COG3867 168 EG------ILPDMVQVGNETNGGFLWPDG 190 (403)
T ss_pred cC------CCccceEeccccCCceeccCC
Confidence 44 3556999999974 3334444
No 56
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=26.16 E-value=2.8e+02 Score=29.19 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=77.5
Q ss_pred eeccCc-----chHHHHHHHHHHcCcEEEEec---CceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHH
Q 045354 4 YDFSGN-----LDFIKFFKLVQEAGLYAIIRI---GPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVN 75 (615)
Q Consensus 4 ~dF~G~-----~Dl~~Fl~la~e~GL~VilRp---GPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~ 75 (615)
+||+.- ..+++-|+.|.+.||.+-|=| +||+-.-|-.| | ..| =.+..++|.+.|+.
T Consensus 77 ~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~ 140 (289)
T PF13204_consen 77 FDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVA 140 (289)
T ss_dssp ---TT----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHH
Confidence 566543 578899999999999986543 34544445444 1 112 14778899999999
Q ss_pred HHHhcCccccCCCceEEEeeccccccccCCCccccHHHHHHHHHHHHhCCCccc-eEEecCC-CCC-----cc-----cc
Q 045354 76 MCKEANLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQMATSQNIGVP-WIMCQQS-DAP-----QP-----MI 143 (615)
Q Consensus 76 ~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~vP-~~~~~~~-~~~-----~~-----~~ 143 (615)
+++.++ +||=+ |=||+ . ......++.+.+.+.+++..-.-+ .++..+. ..+ .+ .+
T Consensus 141 Ry~~~~-------NviW~-l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~ 207 (289)
T PF13204_consen 141 RYGAYP-------NVIWI-LGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMY 207 (289)
T ss_dssp HHTT-S-------SEEEE-EESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEE
T ss_pred HHhcCC-------CCEEE-ecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEe
Confidence 988432 35544 77888 1 124677888888888877543223 2222221 011 00 11
Q ss_pred ccCCCccc-CC-------CC-CCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHcCC
Q 045354 144 NTCNGFYC-DE-------FV-PNNPKSPKMWTEN-WTGWFKKWGDKDPHRTPQDVSFAVARFFQAGG 200 (615)
Q Consensus 144 ~t~ng~~~-~~-------~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 200 (615)
.+...... +. .. ...|.+|.+..|- |.|--..+.......+++++...+=..+-+|+
T Consensus 208 Qsgh~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 208 QSGHNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp B--S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred ecCCCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11111111 11 11 3468899999994 34433332222334577777765544444555
No 57
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=25.68 E-value=1.6e+02 Score=32.57 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCcEEEEecC----ceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHhcCccccCC
Q 045354 12 FIKFFKLVQEAGLYAIIRIG----PYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQG 87 (615)
Q Consensus 12 l~~Fl~la~e~GL~VilRpG----PYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~G 87 (615)
|.+.|+-|++.||+|++-.- .-+| .+. .|. ++.-.. .++....+.++.+.|+. .+++.
T Consensus 118 ld~~I~~a~~~gi~V~iD~H~~~~~~~~--~~~----s~~--------~~~~~~-~~~~~~~~~~~w~~ia~---~f~~~ 179 (407)
T COG2730 118 LDEAINWAKKLGIYVLIDLHGYPGGNNG--HEH----SGY--------TSDYKE-ENENVEATIDIWKFIAN---RFKNY 179 (407)
T ss_pred HHHHHHHHHhcCeeEEEEecccCCCCCC--cCc----ccc--------cccccc-cchhHHHHHHHHHHHHH---hccCC
Confidence 56779999999999998732 2222 111 121 111111 23333444444455551 23445
Q ss_pred CceEEEeeccccc
Q 045354 88 GPIILAQIENEYG 100 (615)
Q Consensus 88 GpII~vQiENEyg 100 (615)
=.||++|+=||=-
T Consensus 180 ~~VIg~~~~NEP~ 192 (407)
T COG2730 180 DTVIGFELINEPN 192 (407)
T ss_pred CceeeeeeecCCc
Confidence 5899999999943
No 58
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=90 Score=31.51 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=62.7
Q ss_pred ceeeccCcchHHHHHHHHHHcCcEEEEecCceeccccCCC-----------CcCcccccC-----CC-----------ce
Q 045354 2 DQYDFSGNLDFIKFFKLVQEAGLYAIIRIGPYVCSEWNYG-----------GFPVWLHNI-----PG-----------IQ 54 (615)
Q Consensus 2 G~~dF~G~~Dl~~Fl~la~e~GL~VilRpGPYIcaEw~~G-----------GlP~WL~~~-----~~-----------~~ 54 (615)
+.|+..=+.++++.|+-|+..-=. |+|=||..|..-- -+=.|.-.. -| |=
T Consensus 75 ~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESMF 151 (221)
T COG2360 75 SPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESMF 151 (221)
T ss_pred CCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhhh
Confidence 456666678899999999875333 8898888774310 111222110 11 21
Q ss_pred eecCChhhHHHHHHHHHHHHHHHHhcCccccCCCceEEEeeccccccccCCCccccHHHHHHHHH
Q 045354 55 LRTNNEIYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYKEAGKSYINWCAQ 119 (615)
Q Consensus 55 lRs~d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~~~~~Ym~~L~~ 119 (615)
-|-.| +.+-=+-++.+.++ ..|+.+|=.|++||.-..-..+..+.++|++.|++
T Consensus 152 sr~~n-----ASKialv~lv~~L~------~~g~~LiD~Q~~n~HL~~~GA~~ipr~~y~~~L~~ 205 (221)
T COG2360 152 SRATN-----ASKIALVHLVEHLR------RHGFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRR 205 (221)
T ss_pred hcCCC-----chHHHHHHHHHHHH------hcCceEEeeecCCHHHHhcCCeecCHHHHHHHHHH
Confidence 12222 33333445556665 56889999999999643211233478999999998
No 59
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.37 E-value=3.1e+02 Score=28.00 Aligned_cols=110 Identities=9% Similarity=0.128 Sum_probs=57.8
Q ss_pred ccCcchHHHHHHHHHHcCcEEE-EecCceeccccCCCCcCcc-------cccCCCcee-------------ecCChhhHH
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAI-IRIGPYVCSEWNYGGFPVW-------LHNIPGIQL-------------RTNNEIYKN 64 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~Vi-lRpGPYIcaEw~~GGlP~W-------L~~~~~~~l-------------Rs~d~~yl~ 64 (615)
+.+..+++..+++|++.|..-| |+++++-+..+.. ++..- +++.-++++ -+.|+.-.+
T Consensus 17 ~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~ 95 (283)
T PRK13209 17 LPAGECWLEKLAIAKTAGFDFVEMSVDESDERLARL-DWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRA 95 (283)
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEEecCccccchhcc-CCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHH
Confidence 3456788899999999998755 6554322110000 00000 001112222 233555566
Q ss_pred HHHHHHHHHHHHHHhcCccccCCCceEEEeeccccccccCCCcc-------ccHHHHHHHHHHHHhCCCcc
Q 045354 65 EMQIFTTKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYKE-------AGKSYINWCAQMATSQNIGV 128 (615)
Q Consensus 65 ~v~~~~~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g~-------~~~~Ym~~L~~~~~~~gi~v 128 (615)
...+.+++.+...+ .+ |.++|.+. |. ...++. .-.+.|+.|.+++++.|+.+
T Consensus 96 ~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 96 QALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASRASVTL 154 (283)
T ss_pred HHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 66667777777766 33 77877653 11 000111 11356777888888888754
No 60
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.22 E-value=3.2e+02 Score=27.87 Aligned_cols=118 Identities=11% Similarity=0.182 Sum_probs=62.2
Q ss_pred ceeec--cCcchHHHHHHHHHHcCcEEE-EecCcee----ccccCCCC---cCcccccCCCce-------------eecC
Q 045354 2 DQYDF--SGNLDFIKFFKLVQEAGLYAI-IRIGPYV----CSEWNYGG---FPVWLHNIPGIQ-------------LRTN 58 (615)
Q Consensus 2 G~~dF--~G~~Dl~~Fl~la~e~GL~Vi-lRpGPYI----caEw~~GG---lP~WL~~~~~~~-------------lRs~ 58 (615)
|.|+. ....++++.++.|++.|+..| +++.++- ..+|+-+- +=.+|. .-|++ +.+.
T Consensus 6 g~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gl~i~~~~~~~~~~~~~~~~ 84 (284)
T PRK13210 6 GIYEKALPKHLSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIY-ETGVRIPSMCLSGHRRFPFGSR 84 (284)
T ss_pred chhhhhcCCCCCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHH-HcCCCceEEecccccCcCCCCC
Confidence 34443 356789999999999999876 6654321 11222111 111111 11222 2244
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCccccCCCceEEEeeccccccccCCCc---cccHHHHHHHHHHHHhCCCcc
Q 045354 59 NEIYKNEMQIFTTKIVNMCKEANLFAPQGGPIILAQIENEYGNIMGPYK---EAGKSYINWCAQMATSQNIGV 128 (615)
Q Consensus 59 d~~yl~~v~~~~~~l~~~i~~~~l~~~~GGpII~vQiENEyg~~~~~~g---~~~~~Ym~~L~~~~~~~gi~v 128 (615)
|+.-.++..+.+++++..-+ -+ |.++|.+---..+... ... ..-.+.|+.|.+++.+.|+.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEE--KSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCccccccc--ccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 66655566666777777666 33 6677765210000000 000 012367888888888888865
No 61
>PRK14706 glycogen branching enzyme; Provisional
Probab=21.79 E-value=7.6e+02 Score=29.21 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.7
Q ss_pred ccCcchHHHHHHHHHHcCcEEEEec
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAIIRI 30 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~VilRp 30 (615)
|....|+.+|++.|+++||.|||-.
T Consensus 213 ~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 213 LGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4456899999999999999999873
No 62
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.48 E-value=95 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=11.9
Q ss_pred EEECCEEEEEEEcc
Q 045354 419 AYVNSKHIGSQFGY 432 (615)
Q Consensus 419 Vfvng~~~G~~~~~ 432 (615)
|||||.++|.....
T Consensus 1 VFlNG~~iG~~~~p 14 (63)
T PF04566_consen 1 VFLNGVWIGIHSDP 14 (63)
T ss_dssp EEETTEEEEEESSH
T ss_pred CEECCEEEEEEcCH
Confidence 79999999998643
No 63
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=21.38 E-value=52 Score=28.93 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=11.0
Q ss_pred ccCCCCcCccccc
Q 045354 37 EWNYGGFPVWLHN 49 (615)
Q Consensus 37 Ew~~GGlP~WL~~ 49 (615)
|...|-||+|+++
T Consensus 33 ~VKLGelpaW~~r 45 (108)
T KOG4092|consen 33 EVKLGELPAWILR 45 (108)
T ss_pred eeeecccHHHHHh
Confidence 5678999999975
No 64
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=21.00 E-value=5.4e+02 Score=24.02 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=65.5
Q ss_pred ceeeccCcch-HHHHHHHHHHc-CcEEEEecCceeccccCCCCcCcccccCCCceeecCChhhHHHHHHHHHHHHHHHHh
Q 045354 2 DQYDFSGNLD-FIKFFKLVQEA-GLYAIIRIGPYVCSEWNYGGFPVWLHNIPGIQLRTNNEIYKNEMQIFTTKIVNMCKE 79 (615)
Q Consensus 2 G~~dF~G~~D-l~~Fl~la~e~-GL~VilRpGPYIcaEw~~GGlP~WL~~~~~~~lRs~d~~yl~~v~~~~~~l~~~i~~ 79 (615)
|.|=|+...- +..|++...+. ...+|.|==|=..-|+ +---.||.+.++ + ++=+|.=|...... +...++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~-~-~~I~Pt~L~~l~~~---i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEG-E-NAISPTNLHKLLDT---IVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCC-C-CccCchhhHHHHHH---HHHHHH-
Confidence 5566664433 77788777554 5888999555444444 445569998763 2 56677666544443 333333
Q ss_pred cCccccCCCceEEEe------eccccccccCCCccccHHHHHHHHHHHHhCCCcc
Q 045354 80 ANLFAPQGGPIILAQ------IENEYGNIMGPYKEAGKSYINWCAQMATSQNIGV 128 (615)
Q Consensus 80 ~~l~~~~GGpII~vQ------iENEyg~~~~~~g~~~~~Ym~~L~~~~~~~gi~v 128 (615)
.+++.||.+. +||.+- .--.++..|||.+...+-.+
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~l 114 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGTL 114 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCEE
Confidence 3456688887 455543 34579999999986554443
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=20.77 E-value=73 Score=37.37 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.7
Q ss_pred ccCcchHHHHHHHHHHcCcEEEEe
Q 045354 6 FSGNLDFIKFFKLVQEAGLYAIIR 29 (615)
Q Consensus 6 F~G~~Dl~~Fl~la~e~GL~VilR 29 (615)
|.+..||++||+.|++.||.|||-
T Consensus 216 ~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 216 YGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 556689999999999999999987
Done!