BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045355
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 69 GVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128
G + S W+ G Y +Y EAI+ Y+ AL +DP+N E +L + D
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 129 GFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169
+E Q+ L L PN+ W +++ + +A+E +
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120
EA E + ++ D + W+ G Y +Y EAI+ Y+ AL +DP+N E +L
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 121 QAQMRDLTGFVETRQQLLTLKPNH 144
+ D +E Q+ L L PN+
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNN 110
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 2 GASLPSKDAN-LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKS 60
GA P A + L Y+ Y + ++ L+ P + E G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118
EA E + ++ D + W+ G Y +Y EAI+ Y+ AL +DP+N E ++L
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135
S W G Y +Y++AI+ Y+ AL +DP+N +L + D +E Q
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 136 QLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188
+ L L PN+ W +++ + KA+E Y+ LE D P+N + +
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIED---YQKALELD--PNNAKAKQ 115
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 2 GASLPSKDANLFKLIVKSY-ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKS 60
GA P A +K + +Y + Y+K ++ L+ P + G
Sbjct: 1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQ 60
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118
+A E + ++ D + W+ G Y +Y++AI+ Y+ AL +DP+N + ++L
Sbjct: 61 KAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120
EA E + ++ D +S W+ G Y +Y EAI+ Y+ AL +DP + E +L
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Query: 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169
+ D +E Q+ L L P W +++ + +A+E +
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLL 138
W+ G Y +Y EAI+ Y+ AL +DP + E +L + D +E Q+ L
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 139 TLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169
L P W +++ + +A+E +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%)
Query: 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK 71
+ L Y+ Y + ++ L+ P E G EA E + ++
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 72 NDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFV 131
D +S W+ G Y +Y EAI+ Y+ AL +DP + E +L + D +
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Query: 132 ETRQQLLTLKP 142
E Q+ L L P
Sbjct: 124 EYYQKALELDP 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 69 GVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128
G + S W+ G Y +Y EAI+ Y+ AL + P+N E +L + D
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 129 GFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169
+E Q+ L L PN+ W +++ + +A+E +
Sbjct: 61 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 69 GVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128
G + S W+ G Y +Y EAI+ Y+ AL +DP+N E +L + D
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 129 GFVETRQQLLTLKPNH 144
+E Q+ L L PN+
Sbjct: 61 EAIEYYQKALELDPNN 76
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118
EA E + ++ D + W+ G Y +Y EAI+ Y+ AL +DP+N E ++L
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135
S W+ G Y +Y EAI+ Y+ AL +DP + E +L + D +E Q
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 136 QLLTLKP 142
+ L L P
Sbjct: 62 KALELDP 68
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108
EA E + ++ D +S W+ G Y +Y EAI+ Y+ AL +DP
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 13 FKLIVKSYETKQYKKGLKAADAILKKFPEH-GETLSMKGLTLNC--MDRKSEAYELVRLG 69
+L + Y+ ++ + + ++ P++ G L + + C +DR + L
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH---FSTLA 59
Query: 70 VKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTG 129
+K + + G +Y+ + +EAI+ YR+ALR+ PD I+ +L+ D+ G
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 130 FVETRQQLLTLKPN 143
V+ L P+
Sbjct: 120 AVQAYVSALQYNPD 133
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 50 GLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109
G L + R EA ++ V W G ++ + E AI + A+ +DP+
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144
++ +L + + R V + L+L PNH
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144
+ + + + EAIK Y+ A+ +DP+ ++S DL +E + L +KP+H
Sbjct: 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144
+ + + + EAIK Y+ A+ +DP+ ++S DL +E + L +KP+H
Sbjct: 31 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 88
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121
G +Y+ + E R+A + Y A +IDP+N E L L L+
Sbjct: 442 GFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELR 479
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121
G +Y+ + E R+A + Y A +IDP+N E L L L+
Sbjct: 442 GFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELR 479
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 69 GVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEI 113
+K+D K+ + W V +Y+ + +A + +R AL I PD+ EI
Sbjct: 34 ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130
+N ++ H GL + + A+ + A++ DP ++E + L QA+
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 131 VETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY 171
+ ++ L LKP+++ + AVS S +A EIL +
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130
+N ++ H GL + + A+ + A++ DP ++E + L QA+
Sbjct: 9 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 68
Query: 131 VETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY 171
+ ++ L LKP+++ + AVS S +A EIL +
Sbjct: 69 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 109
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130
+N ++ H GL + + A+ + A++ DP ++E + L QA+
Sbjct: 18 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 77
Query: 131 VETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168
+ ++ L LKP+++ + AVS S +A EIL
Sbjct: 78 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 115
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 446 ADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNN 483
AD Y++ E +K MLQA ++ E KDGD++N+
Sbjct: 108 ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 145
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 446 ADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNN 483
AD Y++ E +K MLQA ++ E KDGD++N+
Sbjct: 108 ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 145
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 69 GVKNDIKSHVC--------WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120
G D + +C + GL S ++ EA+ Y+ AL +DPDN +L +
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Query: 121 QAQMRD 126
+ ++R+
Sbjct: 124 ELKLRE 129
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 446 ADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNN 483
AD Y++ E +K MLQA ++ E KDGD++N+
Sbjct: 108 ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 145
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 103 ALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162
A+ DP + E + L + QA+ + + Q+ L L+PN+ + AVS+ S+
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 163 KAVEILEAY 171
A E L+ +
Sbjct: 151 DACEALKNW 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,073,945
Number of Sequences: 62578
Number of extensions: 1000013
Number of successful extensions: 2397
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2275
Number of HSP's gapped (non-prelim): 124
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)