Query 045355
Match_columns 900
No_of_seqs 1333 out of 3073
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1156 N-terminal acetyltrans 100.0 2E-107 4E-112 872.3 67.0 694 5-711 3-699 (700)
2 PF12569 NARP1: NMDA receptor- 100.0 2.5E-87 5.4E-92 749.7 56.2 508 187-697 2-517 (517)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-36 1.6E-40 374.4 80.0 606 8-704 124-736 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-36 8.7E-41 376.8 74.5 622 8-717 21-647 (899)
5 KOG4626 O-linked N-acetylgluco 100.0 3.1E-39 6.7E-44 343.2 34.6 435 9-476 48-484 (966)
6 KOG4626 O-linked N-acetylgluco 100.0 2E-39 4.4E-44 344.6 29.6 413 9-454 82-496 (966)
7 PRK11447 cellulose synthase su 100.0 1.4E-32 2.9E-37 347.8 65.7 492 8-514 27-597 (1157)
8 PRK11447 cellulose synthase su 100.0 1.1E-30 2.3E-35 330.5 62.5 570 6-706 59-749 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-29 3.9E-34 300.5 52.0 433 11-524 129-576 (615)
10 KOG2002 TPR-containing nuclear 100.0 8.8E-29 1.9E-33 278.2 53.7 468 12-502 131-612 (1018)
11 PRK15174 Vi polysaccharide exp 100.0 1.2E-27 2.5E-32 283.9 49.0 404 9-516 42-464 (656)
12 KOG2002 TPR-containing nuclear 100.0 1.1E-26 2.4E-31 261.4 52.0 485 4-521 159-711 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 1.2E-25 2.5E-30 271.9 60.0 472 10-522 45-608 (987)
14 TIGR00990 3a0801s09 mitochondr 100.0 6.3E-27 1.4E-31 278.7 43.9 348 8-448 159-576 (615)
15 PRK09782 bacteriophage N4 rece 100.0 1.5E-24 3.3E-29 262.3 52.5 497 8-545 77-732 (987)
16 PRK15174 Vi polysaccharide exp 100.0 4.8E-25 1E-29 261.6 47.4 398 19-537 15-421 (656)
17 PRK10049 pgaA outer membrane p 100.0 1.7E-24 3.7E-29 262.4 49.9 412 17-476 23-455 (765)
18 KOG0547 Translocase of outer m 99.9 5.4E-24 1.2E-28 222.8 32.3 375 10-444 116-567 (606)
19 PRK10049 pgaA outer membrane p 99.9 2.9E-23 6.2E-28 251.7 43.6 421 29-524 2-461 (765)
20 KOG2076 RNA polymerase III tra 99.9 3.6E-21 7.9E-26 216.2 54.0 450 4-549 134-691 (895)
21 KOG0495 HAT repeat protein [RN 99.9 8.1E-21 1.8E-25 204.8 50.2 502 22-551 264-878 (913)
22 KOG0547 Translocase of outer m 99.9 1.3E-22 2.9E-27 212.5 35.4 378 44-520 116-567 (606)
23 PRK14574 hmsH outer membrane p 99.9 9.7E-21 2.1E-25 224.9 50.6 454 6-476 31-512 (822)
24 PRK11788 tetratricopeptide rep 99.9 9.6E-21 2.1E-25 214.0 38.3 209 43-256 35-247 (389)
25 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 213.4 35.1 279 8-305 34-322 (389)
26 PLN03077 Protein ECB2; Provisi 99.9 1.2E-18 2.7E-23 215.9 55.4 582 13-700 55-720 (857)
27 PRK14574 hmsH outer membrane p 99.9 5.6E-19 1.2E-23 210.0 49.8 460 37-525 28-519 (822)
28 KOG1126 DNA-binding cell divis 99.9 4E-21 8.6E-26 210.1 28.7 294 57-449 333-626 (638)
29 KOG1155 Anaphase-promoting com 99.9 9.2E-20 2E-24 190.4 37.3 297 81-476 231-535 (559)
30 KOG1126 DNA-binding cell divis 99.9 9.2E-22 2E-26 215.1 21.8 270 13-300 323-626 (638)
31 KOG2076 RNA polymerase III tra 99.9 5.4E-19 1.2E-23 198.8 43.3 407 44-518 140-554 (895)
32 KOG1173 Anaphase-promoting com 99.9 1.9E-19 4.1E-24 192.8 37.8 410 18-455 25-530 (611)
33 KOG2003 TPR repeat-containing 99.9 6.3E-20 1.4E-24 189.7 32.7 449 10-524 202-694 (840)
34 KOG0548 Molecular co-chaperone 99.9 7.7E-20 1.7E-24 195.4 33.3 421 11-459 4-471 (539)
35 KOG0624 dsRNA-activated protei 99.9 2E-19 4.4E-24 180.6 29.8 345 39-451 34-378 (504)
36 PLN03077 Protein ECB2; Provisi 99.9 2.1E-17 4.6E-22 204.9 54.2 586 40-716 48-702 (857)
37 PLN03218 maturation of RBCL 1; 99.9 3.5E-17 7.6E-22 200.0 51.7 401 11-519 372-783 (1060)
38 KOG0495 HAT repeat protein [RN 99.9 8.1E-18 1.7E-22 181.9 40.3 378 9-456 516-893 (913)
39 PLN03081 pentatricopeptide (PP 99.8 3.1E-17 6.8E-22 198.5 48.9 457 12-519 90-557 (697)
40 PLN03081 pentatricopeptide (PP 99.8 9.8E-18 2.1E-22 202.9 44.4 429 7-478 121-558 (697)
41 KOG1155 Anaphase-promoting com 99.8 8.8E-18 1.9E-22 175.7 32.8 317 15-423 233-550 (559)
42 KOG0548 Molecular co-chaperone 99.8 1.6E-17 3.6E-22 177.7 33.4 399 46-476 5-454 (539)
43 TIGR00540 hemY_coli hemY prote 99.8 5E-17 1.1E-21 183.4 36.9 307 45-443 86-399 (409)
44 KOG2376 Signal recognition par 99.8 2.2E-15 4.7E-20 162.6 46.9 459 10-529 13-497 (652)
45 PRK12370 invasion protein regu 99.8 6.8E-18 1.5E-22 197.6 30.0 233 10-253 259-503 (553)
46 PLN03218 maturation of RBCL 1; 99.8 7.3E-15 1.6E-19 179.8 56.9 454 19-518 416-908 (1060)
47 KOG1174 Anaphase-promoting com 99.8 1.3E-16 2.7E-21 164.5 34.3 378 5-449 93-506 (564)
48 KOG0624 dsRNA-activated protei 99.8 5.9E-17 1.3E-21 163.1 30.3 337 7-418 36-379 (504)
49 PF13429 TPR_15: Tetratricopep 99.8 1.7E-19 3.8E-24 193.4 13.0 264 10-293 9-276 (280)
50 KOG1127 TPR repeat-containing 99.8 1.4E-15 2.9E-20 172.0 42.8 444 22-516 471-949 (1238)
51 PF13429 TPR_15: Tetratricopep 99.8 8.2E-19 1.8E-23 188.2 16.2 261 48-443 13-277 (280)
52 TIGR00540 hemY_coli hemY prote 99.8 1.7E-16 3.7E-21 179.1 35.8 276 8-297 83-369 (409)
53 KOG2003 TPR repeat-containing 99.8 7.4E-17 1.6E-21 167.2 29.5 402 14-448 242-694 (840)
54 KOG1173 Anaphase-promoting com 99.8 1.3E-17 2.9E-22 178.8 24.5 246 19-267 288-533 (611)
55 PRK10747 putative protoheme IX 99.8 5.3E-16 1.1E-20 174.2 38.1 299 46-444 87-391 (398)
56 KOG4162 Predicted calmodulin-b 99.8 2.1E-15 4.6E-20 167.5 40.9 440 39-520 319-784 (799)
57 KOG1156 N-terminal acetyltrans 99.8 2.3E-14 5.1E-19 156.3 47.9 432 6-471 38-505 (700)
58 PRK11189 lipoprotein NlpI; Pro 99.8 3E-17 6.4E-22 176.5 25.5 232 22-267 39-281 (296)
59 KOG1127 TPR repeat-containing 99.8 8.6E-14 1.9E-18 157.7 51.4 412 58-515 473-909 (1238)
60 PRK10747 putative protoheme IX 99.8 1.7E-15 3.6E-20 170.1 37.1 269 9-299 84-362 (398)
61 KOG4162 Predicted calmodulin-b 99.7 4.4E-15 9.5E-20 165.0 35.9 433 9-476 322-782 (799)
62 PRK12370 invasion protein regu 99.7 6.7E-16 1.5E-20 180.8 30.5 236 39-294 252-502 (553)
63 COG3063 PilF Tfp pilus assembl 99.7 6.8E-16 1.5E-20 148.9 24.2 207 10-226 36-244 (250)
64 PRK11189 lipoprotein NlpI; Pro 99.7 1E-15 2.2E-20 164.6 27.0 222 9-238 64-286 (296)
65 KOG1915 Cell cycle control pro 99.7 5.7E-13 1.2E-17 139.9 45.8 469 16-525 80-591 (677)
66 KOG0550 Molecular chaperone (D 99.7 1.2E-15 2.6E-20 157.9 25.7 290 9-446 49-353 (486)
67 KOG1129 TPR repeat-containing 99.7 1.7E-16 3.6E-21 158.9 17.6 243 14-264 228-470 (478)
68 TIGR02521 type_IV_pilW type IV 99.7 2E-15 4.3E-20 156.7 26.8 201 43-253 31-233 (234)
69 KOG1174 Anaphase-promoting com 99.7 9.9E-15 2.1E-19 150.7 30.7 327 35-426 187-517 (564)
70 KOG1125 TPR repeat-containing 99.7 2.5E-16 5.5E-21 170.1 19.9 235 11-255 287-530 (579)
71 TIGR02521 type_IV_pilW type IV 99.7 3.1E-15 6.7E-20 155.2 27.4 202 8-219 30-233 (234)
72 KOG1129 TPR repeat-containing 99.7 1.7E-15 3.7E-20 151.7 21.3 262 19-299 189-463 (478)
73 KOG1125 TPR repeat-containing 99.7 1E-15 2.2E-20 165.4 21.2 239 47-300 289-533 (579)
74 PLN02789 farnesyltranstransfer 99.7 1.2E-14 2.6E-19 155.7 28.7 234 21-264 49-314 (320)
75 COG3063 PilF Tfp pilus assembl 99.7 1.4E-14 3.1E-19 139.8 24.3 209 43-261 35-245 (250)
76 KOG3785 Uncharacterized conser 99.7 1.6E-12 3.4E-17 131.9 38.3 454 16-521 29-492 (557)
77 PLN02789 farnesyltranstransfer 99.7 1.5E-14 3.3E-19 154.9 24.7 206 53-268 47-266 (320)
78 KOG1915 Cell cycle control pro 99.7 6.8E-12 1.5E-16 132.0 43.1 460 30-519 60-536 (677)
79 COG2956 Predicted N-acetylgluc 99.6 1.8E-13 4E-18 137.8 27.7 232 13-255 39-281 (389)
80 KOG1840 Kinesin light chain [C 99.6 1.6E-13 3.5E-18 153.1 27.2 247 4-252 194-479 (508)
81 KOG3785 Uncharacterized conser 99.6 9.5E-12 2.1E-16 126.3 36.1 408 53-514 32-452 (557)
82 COG2956 Predicted N-acetylgluc 99.6 9.3E-13 2E-17 132.7 28.7 239 47-299 39-283 (389)
83 KOG0550 Molecular chaperone (D 99.6 1.3E-13 2.8E-18 143.0 23.2 293 47-476 53-349 (486)
84 cd05804 StaR_like StaR_like; a 99.6 1.7E-12 3.6E-17 144.8 34.1 60 384-443 268-336 (355)
85 cd05804 StaR_like StaR_like; a 99.6 2.9E-12 6.2E-17 142.9 35.7 325 73-523 2-340 (355)
86 KOG1840 Kinesin light chain [C 99.6 1.6E-13 3.5E-18 153.1 25.1 245 39-293 195-478 (508)
87 KOG2053 Mitochondrial inherita 99.6 3.3E-09 7.1E-14 120.7 56.2 536 12-576 12-593 (932)
88 TIGR03302 OM_YfiO outer membra 99.5 1.2E-12 2.7E-17 136.5 23.7 190 39-255 29-235 (235)
89 KOG2376 Signal recognition par 99.5 7.5E-11 1.6E-15 128.0 36.7 207 5-222 42-257 (652)
90 PRK15359 type III secretion sy 99.5 2.3E-13 4.9E-18 129.4 15.2 127 29-158 13-139 (144)
91 TIGR03302 OM_YfiO outer membra 99.5 3.4E-12 7.3E-17 133.3 23.8 190 7-220 31-234 (235)
92 PF12569 NARP1: NMDA receptor- 99.5 4.8E-11 1E-15 135.2 33.2 270 11-291 6-288 (517)
93 COG3071 HemY Uncharacterized e 99.5 2.5E-10 5.4E-15 119.2 34.4 297 47-443 88-390 (400)
94 KOG2047 mRNA splicing factor [ 99.4 1.4E-08 2.9E-13 111.4 45.2 341 140-553 344-723 (835)
95 KOG4340 Uncharacterized conser 99.4 9.2E-11 2E-15 116.7 24.5 394 17-446 18-446 (459)
96 PRK10370 formate-dependent nit 99.4 1.3E-11 2.9E-16 123.8 17.7 169 15-199 22-193 (198)
97 PRK15359 type III secretion sy 99.4 1E-11 2.2E-16 118.1 15.0 114 11-124 26-139 (144)
98 PRK10370 formate-dependent nit 99.4 8.4E-11 1.8E-15 118.0 21.5 125 22-146 52-179 (198)
99 KOG2047 mRNA splicing factor [ 99.3 1.3E-07 2.9E-12 103.8 45.3 482 27-537 86-631 (835)
100 COG3071 HemY Uncharacterized e 99.3 8.4E-09 1.8E-13 107.9 34.7 270 9-296 84-359 (400)
101 COG5010 TadD Flp pilus assembl 99.3 6.6E-11 1.4E-15 117.4 18.1 164 5-168 62-225 (257)
102 KOG3060 Uncharacterized conser 99.3 1.4E-09 3E-14 106.8 26.6 185 73-267 48-235 (289)
103 KOG0553 TPR repeat-containing 99.3 2.2E-11 4.7E-16 123.0 14.1 120 9-128 81-200 (304)
104 TIGR02552 LcrH_SycD type III s 99.3 4.7E-11 1E-15 112.7 15.4 119 30-148 4-122 (135)
105 COG5010 TadD Flp pilus assembl 99.3 2.4E-10 5.1E-15 113.6 20.6 184 20-214 44-227 (257)
106 PRK14720 transcript cleavage f 99.3 2.1E-10 4.6E-15 135.3 23.6 205 39-268 27-268 (906)
107 PRK14720 transcript cleavage f 99.3 3.8E-10 8.2E-15 133.2 25.1 217 6-235 28-269 (906)
108 PRK15179 Vi polysaccharide bio 99.3 3.7E-10 8E-15 132.8 23.2 150 25-177 68-217 (694)
109 PRK04841 transcriptional regul 99.3 1.5E-08 3.3E-13 127.6 38.8 347 16-449 381-766 (903)
110 KOG1128 Uncharacterized conser 99.2 1.9E-10 4.2E-15 127.9 18.0 226 3-253 392-617 (777)
111 PRK04841 transcriptional regul 99.2 4.7E-08 1E-12 123.1 42.2 137 384-522 616-763 (903)
112 KOG3060 Uncharacterized conser 99.2 7E-09 1.5E-13 101.9 25.9 173 45-227 54-229 (289)
113 PRK15179 Vi polysaccharide bio 99.2 2.9E-09 6.3E-14 125.3 25.4 151 102-262 77-227 (694)
114 COG4783 Putative Zn-dependent 99.2 6E-09 1.3E-13 111.9 24.7 153 40-219 303-455 (484)
115 KOG0553 TPR repeat-containing 99.2 2.5E-10 5.5E-15 115.4 13.5 119 44-162 82-200 (304)
116 PRK15363 pathogenicity island 99.2 5.7E-10 1.2E-14 103.9 14.6 110 35-144 26-136 (157)
117 KOG3617 WD40 and TPR repeat-co 99.2 5.6E-07 1.2E-11 101.0 40.1 381 53-518 738-1173(1416)
118 KOG1130 Predicted G-alpha GTPa 99.2 4.3E-10 9.4E-15 116.6 14.6 271 11-293 19-343 (639)
119 COG4783 Putative Zn-dependent 99.2 3.6E-09 7.8E-14 113.6 21.5 154 8-178 305-458 (484)
120 PLN03088 SGT1, suppressor of 99.1 9.6E-10 2.1E-14 121.0 16.4 114 11-124 4-117 (356)
121 PF04733 Coatomer_E: Coatomer 99.1 5.8E-10 1.3E-14 118.3 13.1 262 14-302 6-273 (290)
122 KOG4340 Uncharacterized conser 99.1 8.6E-08 1.9E-12 96.0 27.1 188 54-253 21-208 (459)
123 PRK15363 pathogenicity island 99.1 2E-09 4.4E-14 100.2 14.5 103 7-109 33-135 (157)
124 TIGR02552 LcrH_SycD type III s 99.1 1.8E-09 3.9E-14 101.9 14.3 107 8-114 16-122 (135)
125 KOG1130 Predicted G-alpha GTPa 99.1 3.2E-09 6.9E-14 110.3 16.1 289 48-443 22-344 (639)
126 PRK10866 outer membrane biogen 99.0 3.5E-08 7.6E-13 102.2 22.6 163 8-170 31-237 (243)
127 PF13525 YfiO: Outer membrane 99.0 2.4E-08 5.3E-13 101.0 19.7 158 8-165 4-198 (203)
128 PLN03088 SGT1, suppressor of 99.0 5.8E-09 1.3E-13 114.9 16.0 113 46-158 5-117 (356)
129 PRK10866 outer membrane biogen 99.0 1.2E-07 2.6E-12 98.2 24.3 182 41-249 30-238 (243)
130 KOG1128 Uncharacterized conser 99.0 1.5E-08 3.3E-13 113.1 18.2 222 40-294 395-616 (777)
131 PF04733 Coatomer_E: Coatomer 99.0 3.8E-08 8.2E-13 104.5 19.5 234 8-259 34-272 (290)
132 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.9E-08 4.2E-13 92.3 14.1 105 10-114 3-113 (119)
133 PF13525 YfiO: Outer membrane 98.9 2E-07 4.4E-12 94.3 22.4 175 42-243 4-198 (203)
134 COG4235 Cytochrome c biogenesi 98.9 4E-08 8.8E-13 100.5 17.1 123 24-146 137-262 (287)
135 PF09976 TPR_21: Tetratricopep 98.9 5.2E-08 1.1E-12 93.0 16.7 130 8-138 10-145 (145)
136 KOG2053 Mitochondrial inherita 98.9 0.00021 4.6E-09 82.5 47.7 441 5-471 39-530 (932)
137 CHL00033 ycf3 photosystem I as 98.9 3.9E-08 8.4E-13 96.6 14.9 127 19-145 9-154 (168)
138 TIGR02795 tol_pal_ybgF tol-pal 98.9 4.7E-08 1E-12 89.7 14.1 106 43-148 2-113 (119)
139 KOG1941 Acetylcholine receptor 98.9 2.4E-06 5.1E-11 88.1 26.9 248 1-251 1-274 (518)
140 cd00189 TPR Tetratricopeptide 98.8 4.4E-08 9.5E-13 84.9 12.0 97 46-142 3-99 (100)
141 PRK10153 DNA-binding transcrip 98.8 1.4E-07 3E-12 108.1 18.8 139 7-146 337-488 (517)
142 PF13414 TPR_11: TPR repeat; P 98.8 1.8E-08 3.9E-13 82.6 8.3 66 43-108 3-69 (69)
143 PRK02603 photosystem I assembl 98.8 1.6E-07 3.5E-12 92.5 16.4 105 40-144 32-153 (172)
144 PF13414 TPR_11: TPR repeat; P 98.8 2.8E-08 6.1E-13 81.4 8.6 67 76-142 2-69 (69)
145 COG4785 NlpI Lipoprotein NlpI, 98.8 4.3E-07 9.2E-12 87.2 17.5 197 43-255 65-269 (297)
146 cd00189 TPR Tetratricopeptide 98.8 7E-08 1.5E-12 83.7 11.7 99 11-109 2-100 (100)
147 PF12895 Apc3: Anaphase-promot 98.8 1.6E-08 3.5E-13 86.4 7.2 81 22-103 2-84 (84)
148 PRK11906 transcriptional regul 98.8 3.8E-07 8.2E-12 99.1 18.9 156 11-166 257-428 (458)
149 PRK10803 tol-pal system protei 98.8 2E-07 4.3E-12 97.3 16.3 106 8-113 141-253 (263)
150 PF13432 TPR_16: Tetratricopep 98.7 3.1E-08 6.6E-13 80.0 7.6 65 384-448 1-65 (65)
151 COG4785 NlpI Lipoprotein NlpI, 98.7 7.5E-07 1.6E-11 85.5 18.0 226 186-430 62-291 (297)
152 KOG3617 WD40 and TPR repeat-co 98.7 0.00012 2.6E-09 83.0 37.4 186 30-251 790-995 (1416)
153 CHL00033 ycf3 photosystem I as 98.7 2.6E-07 5.7E-12 90.7 14.6 102 58-159 14-120 (168)
154 COG4235 Cytochrome c biogenesi 98.7 3.8E-07 8.2E-12 93.5 15.7 118 59-179 138-258 (287)
155 PRK15331 chaperone protein Sic 98.7 3.6E-07 7.8E-12 85.6 13.9 110 35-145 29-138 (165)
156 PRK02603 photosystem I assembl 98.7 3.7E-07 8.1E-12 89.9 15.1 103 8-110 34-153 (172)
157 COG0457 NrfG FOG: TPR repeat [ 98.7 2.1E-05 4.7E-10 80.4 28.9 233 13-255 26-268 (291)
158 PF13432 TPR_16: Tetratricopep 98.7 7.5E-08 1.6E-12 77.8 8.0 61 49-109 3-63 (65)
159 KOG0543 FKBP-type peptidyl-pro 98.7 6E-07 1.3E-11 95.1 16.2 85 79-163 259-343 (397)
160 PF14938 SNAP: Soluble NSF att 98.7 8.7E-07 1.9E-11 94.8 17.9 202 48-253 40-267 (282)
161 PF12895 Apc3: Anaphase-promot 98.7 7.5E-08 1.6E-12 82.3 7.5 81 56-137 2-84 (84)
162 KOG1070 rRNA processing protei 98.6 9.8E-06 2.1E-10 96.6 27.1 218 27-253 1442-1664(1710)
163 KOG3081 Vesicle coat complex C 98.6 2.6E-05 5.7E-10 77.9 25.2 264 10-302 10-279 (299)
164 PRK15331 chaperone protein Sic 98.6 7E-07 1.5E-11 83.8 12.9 101 10-111 38-138 (165)
165 PF09976 TPR_21: Tetratricopep 98.6 2.4E-06 5.3E-11 81.5 17.1 120 123-250 23-145 (145)
166 KOG1070 rRNA processing protei 98.6 7.2E-06 1.6E-10 97.7 23.8 220 57-295 1438-1664(1710)
167 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00011 2.3E-09 75.1 30.1 227 56-297 36-268 (291)
168 KOG4648 Uncharacterized conser 98.6 6.5E-08 1.4E-12 98.5 5.3 108 10-117 98-205 (536)
169 KOG0543 FKBP-type peptidyl-pro 98.6 1.1E-06 2.4E-11 93.2 14.6 133 11-143 210-358 (397)
170 PRK11906 transcriptional regul 98.6 4.1E-06 8.9E-11 91.1 19.4 142 35-179 240-403 (458)
171 PRK10803 tol-pal system protei 98.6 1.8E-06 3.9E-11 90.1 16.2 105 43-147 142-253 (263)
172 PF14938 SNAP: Soluble NSF att 98.5 2.1E-06 4.5E-11 91.9 16.8 212 9-226 34-274 (282)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.9E-06 4.2E-11 94.4 16.1 120 49-171 175-294 (395)
174 KOG3616 Selective LIM binding 98.5 0.0014 2.9E-08 73.7 37.3 376 19-443 454-911 (1636)
175 PRK10153 DNA-binding transcrip 98.5 3.7E-06 7.9E-11 96.6 18.7 141 36-180 330-485 (517)
176 COG1729 Uncharacterized protei 98.5 2.4E-06 5.1E-11 86.7 14.4 109 10-118 142-256 (262)
177 COG4105 ComL DNA uptake lipopr 98.5 2.1E-05 4.5E-10 79.2 20.6 167 9-179 34-234 (254)
178 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.4E-06 7.3E-11 92.5 16.1 124 14-140 173-297 (395)
179 KOG2471 TPR repeat-containing 98.5 2.9E-05 6.3E-10 83.2 22.2 146 13-158 210-382 (696)
180 PF14559 TPR_19: Tetratricopep 98.5 6.2E-07 1.3E-11 73.1 7.9 66 20-85 2-67 (68)
181 KOG4648 Uncharacterized conser 98.4 1.8E-07 3.9E-12 95.3 4.9 200 46-257 100-301 (536)
182 COG3898 Uncharacterized membra 98.4 0.00055 1.2E-08 71.9 30.1 302 49-448 90-396 (531)
183 PF13512 TPR_18: Tetratricopep 98.4 7.3E-06 1.6E-10 75.3 14.4 84 9-92 10-99 (142)
184 KOG4234 TPR repeat-containing 98.4 4.8E-06 1E-10 79.1 13.3 118 47-164 99-221 (271)
185 COG4105 ComL DNA uptake lipopr 98.4 0.00021 4.5E-09 72.1 24.2 197 188-448 33-238 (254)
186 PF12688 TPR_5: Tetratrico pep 98.3 8.7E-06 1.9E-10 73.7 12.9 94 45-138 3-102 (120)
187 PF14559 TPR_19: Tetratricopep 98.3 1.4E-06 3.1E-11 70.9 7.0 64 89-152 3-66 (68)
188 PF12688 TPR_5: Tetratrico pep 98.3 1.6E-05 3.5E-10 71.9 14.2 90 78-167 2-97 (120)
189 PF13371 TPR_9: Tetratricopept 98.3 2.7E-06 5.7E-11 70.4 8.5 64 51-114 3-66 (73)
190 PF13371 TPR_9: Tetratricopept 98.3 2.5E-06 5.4E-11 70.6 8.2 66 386-451 1-66 (73)
191 KOG4234 TPR repeat-containing 98.3 2.9E-05 6.4E-10 73.9 15.8 112 9-120 95-211 (271)
192 KOG3616 Selective LIM binding 98.2 0.0039 8.4E-08 70.2 32.1 60 412-471 993-1057(1636)
193 KOG2300 Uncharacterized conser 98.2 0.015 3.3E-07 63.0 41.9 423 44-532 8-485 (629)
194 COG4700 Uncharacterized protei 98.2 0.00018 4E-09 67.9 18.5 158 85-252 64-222 (251)
195 KOG2471 TPR repeat-containing 98.2 0.00081 1.8E-08 72.5 25.4 150 115-267 210-379 (696)
196 KOG1914 mRNA cleavage and poly 98.2 0.019 4.2E-07 63.2 41.8 244 7-251 17-321 (656)
197 COG1729 Uncharacterized protei 98.2 4.8E-05 1E-09 77.4 15.0 105 46-150 144-254 (262)
198 COG3898 Uncharacterized membra 98.1 0.002 4.4E-08 67.8 26.3 262 14-301 125-398 (531)
199 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.2E-05 2.6E-10 87.5 10.5 69 38-106 70-141 (453)
200 KOG3081 Vesicle coat complex C 98.1 0.00043 9.4E-09 69.4 20.5 222 51-301 16-243 (299)
201 KOG2796 Uncharacterized conser 98.1 0.0032 7E-08 62.9 25.5 233 110-448 68-320 (366)
202 PF13512 TPR_18: Tetratricopep 98.1 6.5E-05 1.4E-09 69.1 12.9 105 42-146 9-134 (142)
203 KOG2300 Uncharacterized conser 98.1 0.029 6.2E-07 61.1 40.4 251 156-447 223-518 (629)
204 KOG1941 Acetylcholine receptor 98.1 0.00033 7.1E-09 72.8 19.1 234 15-252 89-360 (518)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.2E-05 7E-10 84.2 11.6 70 72-141 70-142 (453)
206 PF06552 TOM20_plant: Plant sp 98.0 3.9E-05 8.5E-10 72.7 10.6 89 25-113 7-116 (186)
207 COG4700 Uncharacterized protei 98.0 0.00027 5.8E-09 66.8 15.7 156 19-176 66-224 (251)
208 PF07079 DUF1347: Protein of u 98.0 0.036 7.9E-07 60.0 37.9 427 12-452 9-530 (549)
209 KOG1914 mRNA cleavage and poly 98.0 0.046 1E-06 60.4 39.4 169 396-571 309-503 (656)
210 PF13424 TPR_12: Tetratricopep 98.0 1.1E-05 2.3E-10 67.8 4.9 64 43-106 5-75 (78)
211 KOG4642 Chaperone-dependent E3 97.9 7.7E-05 1.7E-09 73.2 10.9 103 4-106 5-107 (284)
212 PF13424 TPR_12: Tetratricopep 97.9 2.5E-05 5.5E-10 65.5 6.7 64 380-443 5-75 (78)
213 KOG4555 TPR repeat-containing 97.9 0.00034 7.3E-09 62.1 13.0 94 47-140 47-144 (175)
214 PF04184 ST7: ST7 protein; In 97.9 0.00064 1.4E-08 74.2 17.9 147 14-173 173-323 (539)
215 PF06552 TOM20_plant: Plant sp 97.9 0.00018 3.9E-09 68.3 11.9 95 59-153 7-122 (186)
216 KOG4555 TPR repeat-containing 97.9 0.00031 6.8E-09 62.3 12.2 83 83-165 49-135 (175)
217 KOG1586 Protein required for f 97.8 0.0037 8.1E-08 61.5 19.6 183 56-299 27-229 (288)
218 KOG0985 Vesicle coat protein c 97.8 0.13 2.9E-06 60.7 34.5 189 41-247 1102-1336(1666)
219 KOG2796 Uncharacterized conser 97.8 0.0022 4.7E-08 64.1 17.6 130 44-173 178-314 (366)
220 KOG2610 Uncharacterized conser 97.7 0.0026 5.6E-08 65.6 18.3 166 44-215 104-273 (491)
221 KOG1586 Protein required for f 97.7 0.013 2.8E-07 57.9 22.1 166 8-174 32-224 (288)
222 KOG0985 Vesicle coat protein c 97.7 0.22 4.8E-06 59.0 37.0 159 56-249 1088-1246(1666)
223 KOG4507 Uncharacterized conser 97.7 0.0076 1.6E-07 66.6 22.3 118 31-148 201-320 (886)
224 KOG4642 Chaperone-dependent E3 97.7 0.00018 3.8E-09 70.8 8.7 95 82-176 15-109 (284)
225 COG3118 Thioredoxin domain-con 97.6 0.0025 5.3E-08 65.5 16.6 152 5-159 130-286 (304)
226 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.1E-08 68.1 16.6 133 14-146 6-142 (280)
227 PF10300 DUF3808: Protein of u 97.6 0.017 3.8E-07 66.1 24.6 191 330-538 187-395 (468)
228 PF13428 TPR_14: Tetratricopep 97.6 0.00016 3.4E-09 52.9 5.3 40 79-118 3-42 (44)
229 KOG2610 Uncharacterized conser 97.5 0.0022 4.7E-08 66.2 14.4 156 15-170 109-272 (491)
230 PF13428 TPR_14: Tetratricopep 97.5 0.00018 3.9E-09 52.6 4.8 42 44-85 2-43 (44)
231 PF13281 DUF4071: Domain of un 97.5 0.0048 1E-07 66.8 17.6 174 332-521 142-336 (374)
232 KOG0376 Serine-threonine phosp 97.5 0.00024 5.1E-09 77.3 7.2 110 12-121 7-116 (476)
233 KOG1585 Protein required for f 97.5 0.024 5.2E-07 56.4 20.1 202 50-257 38-261 (308)
234 KOG1585 Protein required for f 97.4 0.031 6.7E-07 55.6 20.3 198 79-289 33-251 (308)
235 PF05843 Suf: Suppressor of fo 97.4 0.003 6.4E-08 67.4 14.9 91 79-169 3-94 (280)
236 KOG0530 Protein farnesyltransf 97.4 0.02 4.3E-07 57.5 18.6 235 22-263 56-309 (318)
237 PF13281 DUF4071: Domain of un 97.3 0.053 1.1E-06 59.0 23.3 191 42-265 140-347 (374)
238 PF13431 TPR_17: Tetratricopep 97.3 0.0002 4.4E-09 48.8 3.0 33 402-434 1-33 (34)
239 PF04184 ST7: ST7 protein; In 97.3 0.027 5.9E-07 61.9 20.6 227 228-524 173-419 (539)
240 KOG4507 Uncharacterized conser 97.3 0.026 5.7E-07 62.6 20.2 113 64-179 200-314 (886)
241 KOG0545 Aryl-hydrocarbon recep 97.3 0.0059 1.3E-07 60.5 13.8 99 11-109 180-296 (329)
242 KOG0545 Aryl-hydrocarbon recep 97.3 0.0021 4.4E-08 63.6 10.3 103 44-146 179-299 (329)
243 PF13431 TPR_17: Tetratricopep 97.2 0.00031 6.7E-09 47.9 3.1 30 101-130 3-32 (34)
244 PF02259 FAT: FAT domain; Int 97.2 0.089 1.9E-06 58.3 24.7 149 107-255 142-341 (352)
245 PF00515 TPR_1: Tetratricopept 97.2 0.00061 1.3E-08 46.5 4.5 32 78-109 2-33 (34)
246 KOG0376 Serine-threonine phosp 97.1 0.00085 1.8E-08 73.1 6.9 108 47-154 8-115 (476)
247 COG3118 Thioredoxin domain-con 97.1 0.044 9.5E-07 56.6 18.6 153 42-203 133-286 (304)
248 KOG1258 mRNA processing protei 97.1 0.76 1.6E-05 52.2 38.1 354 24-428 60-489 (577)
249 PF07719 TPR_2: Tetratricopept 97.1 0.00091 2E-08 45.6 4.6 33 415-447 2-34 (34)
250 PF07719 TPR_2: Tetratricopept 97.1 0.001 2.2E-08 45.3 4.9 33 78-110 2-34 (34)
251 PF00515 TPR_1: Tetratricopept 97.1 0.0007 1.5E-08 46.3 4.0 32 415-446 2-33 (34)
252 PF10345 Cohesin_load: Cohesin 97.1 1.1 2.3E-05 53.7 42.7 277 4-289 52-428 (608)
253 KOG1258 mRNA processing protei 97.1 0.85 1.9E-05 51.7 37.7 136 382-523 333-474 (577)
254 PF10300 DUF3808: Protein of u 97.0 0.031 6.6E-07 64.1 18.7 149 21-170 200-372 (468)
255 PF02259 FAT: FAT domain; Int 97.0 0.15 3.2E-06 56.5 23.6 241 16-267 5-302 (352)
256 PF07079 DUF1347: Protein of u 96.9 0.86 1.9E-05 49.8 42.3 48 649-697 474-521 (549)
257 KOG0530 Protein farnesyltransf 96.9 0.12 2.6E-06 52.1 18.9 204 54-267 54-269 (318)
258 PF08631 SPO22: Meiosis protei 96.9 0.19 4E-06 53.6 22.0 130 157-296 5-152 (278)
259 KOG1308 Hsp70-interacting prot 96.9 0.00049 1.1E-08 71.5 2.1 89 53-141 124-212 (377)
260 KOG1550 Extracellular protein 96.8 0.4 8.6E-06 56.4 25.6 254 23-299 263-543 (552)
261 PF08424 NRDE-2: NRDE-2, neces 96.8 0.11 2.3E-06 56.7 19.4 135 93-253 47-184 (321)
262 COG2976 Uncharacterized protei 96.7 0.12 2.7E-06 50.0 16.8 119 131-257 72-193 (207)
263 PF03704 BTAD: Bacterial trans 96.7 0.038 8.2E-07 52.5 13.3 114 13-139 10-124 (146)
264 PF08631 SPO22: Meiosis protei 96.6 0.6 1.3E-05 49.7 23.8 225 19-251 3-274 (278)
265 PF03704 BTAD: Bacterial trans 96.6 0.038 8.2E-07 52.5 13.1 117 48-177 11-128 (146)
266 COG2909 MalT ATP-dependent tra 96.6 0.71 1.5E-05 54.7 25.1 236 11-249 417-685 (894)
267 KOG0890 Protein kinase of the 96.6 3.3 7.1E-05 54.4 32.6 423 116-574 1388-1853(2382)
268 PF10345 Cohesin_load: Cohesin 96.6 2.6 5.7E-05 50.4 44.2 186 26-215 38-251 (608)
269 KOG0551 Hsp90 co-chaperone CNS 96.5 0.052 1.1E-06 56.5 13.7 92 79-170 83-178 (390)
270 COG2976 Uncharacterized protei 96.5 0.12 2.7E-06 50.0 15.3 95 47-143 93-191 (207)
271 KOG0551 Hsp90 co-chaperone CNS 96.4 0.066 1.4E-06 55.8 13.3 98 12-109 84-185 (390)
272 KOG1550 Extracellular protein 96.4 1.8 3.8E-05 51.1 27.3 266 59-345 228-520 (552)
273 COG2909 MalT ATP-dependent tra 96.3 1.2 2.7E-05 52.8 24.7 239 42-290 414-684 (894)
274 PF13181 TPR_8: Tetratricopept 96.3 0.0058 1.3E-07 41.6 3.8 30 416-445 3-32 (34)
275 PF13181 TPR_8: Tetratricopept 96.2 0.0074 1.6E-07 41.0 4.1 31 79-109 3-33 (34)
276 KOG1308 Hsp70-interacting prot 96.1 0.0029 6.2E-08 65.9 2.1 79 87-165 124-202 (377)
277 PRK15180 Vi polysaccharide bio 96.0 3.2 6.9E-05 45.6 24.7 63 9-71 289-351 (831)
278 KOG1464 COP9 signalosome, subu 95.9 1.5 3.2E-05 44.6 19.8 50 202-251 40-93 (440)
279 PRK13184 pknD serine/threonine 95.8 4.1 8.9E-05 50.3 27.3 102 17-119 483-594 (932)
280 PF04910 Tcf25: Transcriptiona 95.8 0.23 5.1E-06 54.7 15.4 176 34-222 31-226 (360)
281 KOG0890 Protein kinase of the 95.7 12 0.00026 49.6 33.2 359 82-476 1388-1780(2382)
282 PF04910 Tcf25: Transcriptiona 95.6 0.66 1.4E-05 51.1 17.9 137 382-523 42-226 (360)
283 PF08424 NRDE-2: NRDE-2, neces 95.6 0.79 1.7E-05 49.9 18.4 110 99-218 7-131 (321)
284 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.062 1.4E-06 40.6 6.7 43 382-424 3-45 (53)
285 KOG0128 RNA-binding protein SA 95.5 7.5 0.00016 46.0 34.2 396 26-443 96-526 (881)
286 PRK10941 hypothetical protein; 95.4 0.14 3E-06 53.7 11.3 74 80-153 184-257 (269)
287 PF04781 DUF627: Protein of un 95.3 0.12 2.6E-06 45.4 8.8 103 15-140 2-107 (111)
288 KOG3783 Uncharacterized conser 95.3 2.4 5.2E-05 47.7 20.7 224 27-256 251-524 (546)
289 PF13176 TPR_7: Tetratricopept 95.2 0.026 5.7E-07 39.0 3.6 25 417-441 2-26 (36)
290 KOG2396 HAT (Half-A-TPR) repea 95.2 6.7 0.00015 43.7 39.8 92 27-118 89-181 (568)
291 PF13174 TPR_6: Tetratricopept 95.1 0.038 8.3E-07 37.0 4.2 32 225-256 2-33 (33)
292 COG5107 RNA14 Pre-mRNA 3'-end 95.1 6.5 0.00014 43.1 37.5 404 6-473 39-491 (660)
293 PF04781 DUF627: Protein of un 95.1 0.21 4.5E-06 43.9 9.4 104 49-178 2-108 (111)
294 PF13176 TPR_7: Tetratricopept 95.1 0.037 8.1E-07 38.2 4.0 25 80-104 2-26 (36)
295 KOG1464 COP9 signalosome, subu 95.0 1.2 2.5E-05 45.3 15.7 105 149-253 149-261 (440)
296 COG5107 RNA14 Pre-mRNA 3'-end 95.0 7 0.00015 42.9 31.3 143 382-535 304-477 (660)
297 COG0790 FOG: TPR repeat, SEL1 95.0 5.3 0.00011 42.8 22.6 182 54-254 52-268 (292)
298 KOG3824 Huntingtin interacting 95.0 0.22 4.7E-06 51.3 10.7 68 52-119 125-192 (472)
299 PF13174 TPR_6: Tetratricopept 95.0 0.055 1.2E-06 36.2 4.6 31 11-41 2-32 (33)
300 PF10602 RPN7: 26S proteasome 94.9 0.25 5.5E-06 48.5 11.0 91 382-472 38-137 (177)
301 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.14 3.1E-06 38.7 6.9 37 79-115 3-39 (53)
302 PF09613 HrpB1_HrpK: Bacterial 94.8 0.38 8.2E-06 45.5 11.1 81 12-92 13-93 (160)
303 PRK15180 Vi polysaccharide bio 94.7 8.3 0.00018 42.5 29.0 132 121-262 299-430 (831)
304 KOG3824 Huntingtin interacting 94.7 0.3 6.6E-06 50.3 10.9 70 84-153 123-192 (472)
305 PF12968 DUF3856: Domain of Un 94.7 0.94 2E-05 40.1 12.2 94 12-105 12-128 (144)
306 PF14561 TPR_20: Tetratricopep 94.6 0.32 7E-06 41.6 9.5 64 29-92 8-73 (90)
307 PF09613 HrpB1_HrpK: Bacterial 94.5 1.7 3.8E-05 41.2 14.7 84 44-127 11-94 (160)
308 COG0790 FOG: TPR repeat, SEL1 94.3 8.9 0.00019 41.0 24.9 184 18-220 50-268 (292)
309 KOG3807 Predicted membrane pro 94.2 8.4 0.00018 40.5 20.0 214 14-266 189-405 (556)
310 KOG2041 WD40 repeat protein [G 94.2 14 0.0003 42.8 31.1 195 17-248 671-877 (1189)
311 COG4649 Uncharacterized protei 94.2 4.7 0.0001 38.5 16.4 149 6-155 55-210 (221)
312 smart00028 TPR Tetratricopepti 94.0 0.092 2E-06 34.2 4.0 31 79-109 3-33 (34)
313 smart00028 TPR Tetratricopepti 93.9 0.096 2.1E-06 34.1 3.9 30 416-445 3-32 (34)
314 COG4976 Predicted methyltransf 93.9 0.091 2E-06 51.9 5.0 61 389-449 4-64 (287)
315 PF14561 TPR_20: Tetratricopep 93.8 0.64 1.4E-05 39.8 9.6 63 64-126 9-73 (90)
316 COG3914 Spy Predicted O-linked 93.8 1.6 3.4E-05 49.5 14.9 134 21-154 42-185 (620)
317 KOG2396 HAT (Half-A-TPR) repea 93.6 15 0.00032 41.2 35.1 74 11-84 106-181 (568)
318 KOG1310 WD40 repeat protein [G 93.6 0.31 6.8E-06 53.8 8.9 106 5-110 370-478 (758)
319 PF15015 NYD-SP12_N: Spermatog 93.6 1.1 2.5E-05 48.3 12.8 95 9-103 176-288 (569)
320 PRK10941 hypothetical protein; 93.5 0.62 1.3E-05 48.9 10.9 70 380-449 181-250 (269)
321 TIGR02561 HrpB1_HrpK type III 93.3 2.9 6.3E-05 39.0 13.4 77 51-127 18-94 (153)
322 KOG0529 Protein geranylgeranyl 93.2 5.2 0.00011 43.6 17.2 145 12-156 31-194 (421)
323 PF09986 DUF2225: Uncharacteri 93.2 0.9 1.9E-05 46.0 11.2 85 23-107 91-195 (214)
324 TIGR02561 HrpB1_HrpK type III 93.1 3 6.6E-05 38.9 13.3 83 11-93 12-94 (153)
325 KOG4814 Uncharacterized conser 93.1 20 0.00044 41.2 28.1 96 11-106 356-457 (872)
326 KOG2041 WD40 repeat protein [G 93.1 21 0.00047 41.4 27.9 160 20-214 716-877 (1189)
327 COG4649 Uncharacterized protei 92.9 5.4 0.00012 38.1 14.7 127 385-518 63-195 (221)
328 PF12968 DUF3856: Domain of Un 92.9 0.84 1.8E-05 40.4 8.8 94 350-443 25-129 (144)
329 KOG1839 Uncharacterized protei 92.8 2.2 4.7E-05 53.0 15.2 160 7-166 930-1120(1236)
330 PF09986 DUF2225: Uncharacteri 92.7 2 4.4E-05 43.5 12.9 71 375-445 113-196 (214)
331 KOG2422 Uncharacterized conser 92.5 5.4 0.00012 45.2 16.5 159 57-221 252-451 (665)
332 KOG3364 Membrane protein invol 92.3 2.5 5.3E-05 38.6 11.2 74 43-116 32-110 (149)
333 KOG3783 Uncharacterized conser 92.3 24 0.00052 40.0 28.4 243 187-446 265-523 (546)
334 PF10602 RPN7: 26S proteasome 92.1 2.2 4.7E-05 41.9 12.0 100 112-215 37-139 (177)
335 KOG1463 26S proteasome regulat 91.7 20 0.00044 38.1 22.3 277 11-296 6-318 (411)
336 KOG3364 Membrane protein invol 91.5 4 8.6E-05 37.3 11.6 79 145-228 32-110 (149)
337 COG4976 Predicted methyltransf 91.2 0.35 7.6E-06 47.9 5.1 57 54-110 6-62 (287)
338 KOG1839 Uncharacterized protei 91.2 2.3 4.9E-05 52.8 13.0 171 45-217 934-1127(1236)
339 PF10579 Rapsyn_N: Rapsyn N-te 91.0 1.4 3.1E-05 36.1 7.5 61 10-70 7-70 (80)
340 COG3914 Spy Predicted O-linked 90.8 36 0.00078 39.1 21.1 134 96-232 50-185 (620)
341 KOG1538 Uncharacterized conser 90.7 37 0.0008 39.2 20.9 180 386-578 709-906 (1081)
342 COG1747 Uncharacterized N-term 90.7 33 0.00072 38.6 23.0 223 21-257 26-293 (711)
343 COG5191 Uncharacterized conser 90.5 0.54 1.2E-05 48.7 5.9 86 66-151 96-182 (435)
344 KOG2422 Uncharacterized conser 90.3 18 0.00038 41.3 17.6 137 382-522 286-451 (665)
345 PF04053 Coatomer_WDAD: Coatom 90.1 12 0.00026 42.6 16.9 47 76-130 346-392 (443)
346 COG5191 Uncharacterized conser 89.8 0.63 1.4E-05 48.2 5.7 82 38-119 102-184 (435)
347 KOG0529 Protein geranylgeranyl 89.2 4.7 0.0001 43.9 12.0 129 23-151 89-235 (421)
348 COG2912 Uncharacterized conser 89.2 3.2 6.9E-05 43.0 10.3 73 80-152 184-256 (269)
349 PF04190 DUF410: Protein of un 88.9 33 0.00072 36.0 19.3 145 12-174 13-170 (260)
350 KOG2114 Vacuolar assembly/sort 88.8 61 0.0013 38.9 26.5 251 14-301 339-597 (933)
351 PF13374 TPR_10: Tetratricopep 88.8 0.84 1.8E-05 32.2 4.4 29 78-106 3-31 (42)
352 PF04097 Nic96: Nup93/Nic96; 87.7 14 0.0003 44.1 16.2 110 382-517 416-532 (613)
353 PF10255 Paf67: RNA polymerase 87.2 12 0.00026 41.5 14.0 69 147-217 124-192 (404)
354 KOG2581 26S proteasome regulat 87.0 22 0.00047 38.8 15.0 140 6-145 121-281 (493)
355 PF13374 TPR_10: Tetratricopep 86.9 1.1 2.4E-05 31.5 4.1 28 382-409 4-31 (42)
356 KOG1310 WD40 repeat protein [G 86.6 2.1 4.6E-05 47.6 7.6 90 56-145 387-479 (758)
357 COG5159 RPN6 26S proteasome re 86.3 41 0.0009 34.9 15.9 211 13-252 7-235 (421)
358 PF12862 Apc5: Anaphase-promot 86.1 2.1 4.6E-05 37.0 6.1 54 390-443 8-70 (94)
359 PF04053 Coatomer_WDAD: Coatom 86.1 34 0.00073 39.0 17.3 117 21-163 273-391 (443)
360 KOG1538 Uncharacterized conser 85.9 36 0.00078 39.3 16.6 177 13-215 636-830 (1081)
361 COG1747 Uncharacterized N-term 85.9 68 0.0015 36.3 22.5 61 190-252 100-160 (711)
362 PF07720 TPR_3: Tetratricopept 85.0 2.6 5.6E-05 29.0 4.8 31 79-109 3-35 (36)
363 COG5159 RPN6 26S proteasome re 84.2 57 0.0012 34.0 21.5 101 115-218 129-235 (421)
364 KOG2581 26S proteasome regulat 83.9 72 0.0016 35.0 23.0 203 12-222 33-280 (493)
365 COG5536 BET4 Protein prenyltra 83.8 44 0.00095 34.7 14.7 130 25-154 90-236 (328)
366 PF09797 NatB_MDM20: N-acetylt 83.7 78 0.0017 35.1 27.9 139 427-573 196-335 (365)
367 PF07721 TPR_4: Tetratricopept 83.1 1.7 3.7E-05 27.3 3.1 21 383-403 4-24 (26)
368 PF11207 DUF2989: Protein of u 82.7 24 0.00053 34.9 12.2 73 92-165 121-198 (203)
369 PF12862 Apc5: Anaphase-promot 82.7 5.5 0.00012 34.4 7.2 54 18-71 7-69 (94)
370 PF11207 DUF2989: Protein of u 82.3 27 0.00059 34.6 12.4 57 186-243 138-198 (203)
371 COG2912 Uncharacterized conser 82.1 5.2 0.00011 41.4 7.8 71 48-118 186-256 (269)
372 PF09670 Cas_Cas02710: CRISPR- 81.9 16 0.00035 40.7 12.4 62 11-72 133-198 (379)
373 PF07720 TPR_3: Tetratricopept 81.8 3.7 7.9E-05 28.3 4.5 32 415-446 2-35 (36)
374 PF07721 TPR_4: Tetratricopept 81.7 2.2 4.7E-05 26.8 3.2 24 416-439 3-26 (26)
375 PF04190 DUF410: Protein of un 81.3 75 0.0016 33.3 21.8 147 29-202 70-241 (260)
376 COG4941 Predicted RNA polymera 81.1 71 0.0015 34.2 15.4 132 26-166 213-350 (415)
377 cd02683 MIT_1 MIT: domain cont 81.1 4.8 0.0001 33.3 5.9 31 436-466 35-68 (77)
378 KOG4814 Uncharacterized conser 80.6 1.2E+02 0.0026 35.3 28.6 90 383-472 357-452 (872)
379 COG3629 DnrI DNA-binding trans 80.3 15 0.00032 38.7 10.5 68 111-178 153-220 (280)
380 COG3629 DnrI DNA-binding trans 80.0 8.9 0.00019 40.3 8.8 62 382-443 155-216 (280)
381 PRK13184 pknD serine/threonine 79.7 1.7E+02 0.0038 36.6 28.4 98 51-149 483-590 (932)
382 PF15015 NYD-SP12_N: Spermatog 79.3 41 0.0009 36.9 13.4 60 191-250 230-289 (569)
383 KOG3807 Predicted membrane pro 79.2 92 0.002 33.1 16.4 140 228-433 189-330 (556)
384 PF10516 SHNi-TPR: SHNi-TPR; 79.0 3.5 7.6E-05 28.8 3.7 29 78-106 2-30 (38)
385 PF10516 SHNi-TPR: SHNi-TPR; 78.6 3.4 7.3E-05 28.9 3.5 29 415-443 2-30 (38)
386 cd02682 MIT_AAA_Arch MIT: doma 77.7 6.5 0.00014 32.2 5.4 24 383-406 9-32 (75)
387 cd02681 MIT_calpain7_1 MIT: do 76.7 6 0.00013 32.5 5.1 24 384-407 10-33 (76)
388 PF11817 Foie-gras_1: Foie gra 76.4 1E+02 0.0022 32.1 16.5 60 381-440 179-244 (247)
389 PRK11619 lytic murein transgly 75.5 1.9E+02 0.0041 34.8 37.9 127 9-146 33-164 (644)
390 TIGR03362 VI_chp_7 type VI sec 75.5 1.2E+02 0.0026 32.5 16.2 166 5-178 95-283 (301)
391 cd02680 MIT_calpain7_2 MIT: do 74.8 8 0.00017 31.7 5.3 33 396-443 3-35 (75)
392 PF00244 14-3-3: 14-3-3 protei 74.8 1E+02 0.0022 31.8 14.9 46 206-251 143-197 (236)
393 PF04212 MIT: MIT (microtubule 74.4 5.4 0.00012 32.1 4.3 17 426-442 17-33 (69)
394 PF10373 EST1_DNA_bind: Est1 D 74.3 10 0.00023 40.0 7.9 62 62-123 1-62 (278)
395 COG3947 Response regulator con 74.0 12 0.00027 38.8 7.6 59 382-440 281-339 (361)
396 PF10579 Rapsyn_N: Rapsyn N-te 73.2 21 0.00046 29.4 7.2 51 49-99 12-65 (80)
397 PF00244 14-3-3: 14-3-3 protei 73.0 27 0.00058 36.0 10.1 31 191-221 3-33 (236)
398 PRK12798 chemotaxis protein; R 72.0 1.7E+02 0.0037 32.6 22.6 169 42-219 111-287 (421)
399 cd02684 MIT_2 MIT: domain cont 72.0 7.3 0.00016 32.0 4.5 36 426-461 18-63 (75)
400 KOG1463 26S proteasome regulat 71.9 1.5E+02 0.0032 31.9 23.7 165 47-215 8-194 (411)
401 smart00386 HAT HAT (Half-A-TPR 71.9 8.5 0.00018 25.0 4.2 30 394-423 1-30 (33)
402 PF14863 Alkyl_sulf_dimr: Alky 71.9 9 0.00019 35.9 5.6 49 10-58 71-119 (141)
403 cd02677 MIT_SNX15 MIT: domain 71.0 14 0.00031 30.3 6.0 45 426-476 18-72 (75)
404 COG4455 ImpE Protein of avirul 70.1 1.3E+02 0.0027 30.4 13.4 121 388-515 9-129 (273)
405 TIGR03504 FimV_Cterm FimV C-te 69.3 9.2 0.0002 27.7 4.0 25 384-408 3-27 (44)
406 KOG0128 RNA-binding protein SA 68.4 2.8E+02 0.006 33.6 35.7 232 57-301 93-348 (881)
407 PF09797 NatB_MDM20: N-acetylt 68.3 45 0.00098 37.0 11.4 108 58-169 198-310 (365)
408 COG4455 ImpE Protein of avirul 67.4 81 0.0018 31.7 11.2 56 89-144 13-68 (273)
409 PF10373 EST1_DNA_bind: Est1 D 67.3 16 0.00035 38.6 7.4 62 96-157 1-62 (278)
410 COG5536 BET4 Protein prenyltra 66.7 1.7E+02 0.0037 30.6 16.0 136 26-161 49-203 (328)
411 KOG0276 Vesicle coat complex C 66.7 79 0.0017 36.5 12.4 100 53-170 647-746 (794)
412 PF13041 PPR_2: PPR repeat fam 66.7 26 0.00056 25.8 6.3 31 223-253 3-33 (50)
413 smart00386 HAT HAT (Half-A-TPR 66.0 13 0.00028 24.0 4.2 19 27-45 5-23 (33)
414 cd02678 MIT_VPS4 MIT: domain c 65.4 14 0.00031 30.3 5.1 17 426-442 18-34 (75)
415 smart00745 MIT Microtubule Int 65.3 13 0.00028 30.6 4.8 36 426-461 20-65 (77)
416 KOG2114 Vacuolar assembly/sort 65.0 1.3E+02 0.0028 36.3 14.1 175 49-249 340-516 (933)
417 smart00101 14_3_3 14-3-3 homol 64.2 1.8E+02 0.004 30.1 17.6 57 192-248 4-64 (244)
418 PRK11619 lytic murein transgly 64.0 3.3E+02 0.0071 32.9 36.2 55 384-440 411-465 (644)
419 TIGR03504 FimV_Cterm FimV C-te 63.7 12 0.00027 27.1 3.7 27 494-520 3-29 (44)
420 KOG4279 Serine/threonine prote 63.1 24 0.00053 41.3 7.8 175 330-516 200-392 (1226)
421 smart00299 CLH Clathrin heavy 62.4 1.3E+02 0.0028 27.8 14.8 117 21-156 19-136 (140)
422 COG3947 Response regulator con 61.3 80 0.0017 33.1 10.3 60 191-250 281-340 (361)
423 PF13041 PPR_2: PPR repeat fam 60.8 35 0.00077 25.1 6.1 24 81-104 7-30 (50)
424 KOG0546 HSP90 co-chaperone CPR 60.0 16 0.00035 39.1 5.4 122 15-151 228-349 (372)
425 cd02656 MIT MIT: domain contai 59.2 21 0.00046 29.2 5.0 17 426-442 18-34 (75)
426 cd00280 TRFH Telomeric Repeat 58.8 31 0.00067 33.5 6.5 64 650-714 82-153 (200)
427 PF12854 PPR_1: PPR repeat 58.6 21 0.00046 24.0 4.1 24 382-405 9-32 (34)
428 COG3483 TDO2 Tryptophan 2,3-di 57.4 49 0.0011 32.6 7.6 80 489-576 39-123 (262)
429 PF13226 DUF4034: Domain of un 56.2 1.5E+02 0.0031 31.4 11.6 136 15-162 6-150 (277)
430 PF09670 Cas_Cas02710: CRISPR- 56.2 2.1E+02 0.0044 32.0 13.7 58 115-172 135-196 (379)
431 PF12854 PPR_1: PPR repeat 55.9 27 0.00057 23.5 4.2 27 413-439 6-32 (34)
432 KOG0687 26S proteasome regulat 55.3 1.7E+02 0.0037 31.3 11.7 26 78-103 105-130 (393)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 55.2 1.7E+02 0.0037 26.8 11.3 118 312-441 2-126 (126)
434 KOG2758 Translation initiation 55.2 2.9E+02 0.0063 29.5 21.8 195 95-299 113-322 (432)
435 cd02679 MIT_spastin MIT: domai 55.1 20 0.00043 29.7 4.1 35 394-443 3-37 (79)
436 KOG0546 HSP90 co-chaperone CPR 54.7 9.8 0.00021 40.7 2.8 75 383-457 278-352 (372)
437 PF11817 Foie-gras_1: Foie gra 53.3 79 0.0017 32.9 9.4 24 115-138 182-205 (247)
438 PF05053 Menin: Menin; InterP 53.2 1.6E+02 0.0035 33.9 11.8 67 393-474 273-344 (618)
439 TIGR02710 CRISPR-associated pr 52.8 2.4E+02 0.0051 31.3 13.0 56 13-68 134-196 (380)
440 PF11846 DUF3366: Domain of un 52.2 37 0.00081 33.7 6.5 53 396-449 127-179 (193)
441 PF10255 Paf67: RNA polymerase 51.1 26 0.00057 39.0 5.5 60 192-251 125-192 (404)
442 PF12739 TRAPPC-Trs85: ER-Golg 50.2 4.2E+02 0.0092 29.9 15.3 26 46-71 211-236 (414)
443 PRK12798 chemotaxis protein; R 49.4 4.2E+02 0.0091 29.6 20.9 201 9-216 112-322 (421)
444 COG4941 Predicted RNA polymera 48.9 3.8E+02 0.0082 29.0 17.7 161 93-264 212-406 (415)
445 KOG0686 COP9 signalosome, subu 48.7 3.6E+02 0.0079 29.9 13.1 97 415-515 151-254 (466)
446 PF14863 Alkyl_sulf_dimr: Alky 48.4 43 0.00094 31.3 5.7 49 382-430 72-120 (141)
447 KOG0686 COP9 signalosome, subu 48.2 2.8E+02 0.0061 30.7 12.2 94 382-475 152-256 (466)
448 PF07163 Pex26: Pex26 protein; 48.0 3.6E+02 0.0078 28.4 13.0 129 383-513 38-181 (309)
449 KOG0276 Vesicle coat complex C 47.3 1.9E+02 0.0041 33.6 11.2 112 21-162 598-709 (794)
450 KOG1920 IkappaB kinase complex 46.6 7.3E+02 0.016 31.6 19.5 86 415-516 940-1025(1265)
451 PF01535 PPR: PPR repeat; Int 46.5 29 0.00063 22.0 3.2 26 226-251 3-28 (31)
452 smart00299 CLH Clathrin heavy 45.2 2.5E+02 0.0054 25.8 14.5 48 390-438 17-64 (140)
453 PF04090 RNA_pol_I_TF: RNA pol 45.0 3.1E+02 0.0067 27.4 11.3 42 224-265 42-83 (199)
454 PF04097 Nic96: Nup93/Nic96; 43.9 4.8E+02 0.01 31.3 15.0 157 49-216 264-441 (613)
455 KOG4279 Serine/threonine prote 43.8 1.8E+02 0.0038 34.7 10.5 190 186-413 198-399 (1226)
456 PF12739 TRAPPC-Trs85: ER-Golg 43.3 5.3E+02 0.012 29.1 17.1 160 7-174 206-399 (414)
457 PF01535 PPR: PPR repeat; Int 42.7 39 0.00084 21.4 3.4 22 385-406 5-26 (31)
458 PF04348 LppC: LppC putative l 42.4 8.3 0.00018 45.1 0.0 179 112-306 25-206 (536)
459 COG5187 RPN7 26S proteasome re 42.2 4.4E+02 0.0096 27.8 14.0 27 78-104 116-142 (412)
460 KOG4521 Nuclear pore complex, 40.8 8.8E+02 0.019 30.9 17.2 201 77-306 920-1143(1480)
461 PF09205 DUF1955: Domain of un 39.1 2.3E+02 0.0051 26.2 8.4 65 7-71 83-148 (161)
462 TIGR00756 PPR pentatricopeptid 38.6 62 0.0014 20.9 4.0 27 226-252 3-29 (35)
463 cd02682 MIT_AAA_Arch MIT: doma 38.3 1E+02 0.0022 25.3 5.6 27 10-36 7-33 (75)
464 PF12753 Nro1: Nuclear pore co 37.9 6.1E+02 0.013 28.2 13.4 48 651-700 332-391 (404)
465 PF07219 HemY_N: HemY protein 37.3 1.2E+02 0.0027 26.8 6.7 44 48-91 64-107 (108)
466 KOG0687 26S proteasome regulat 36.6 4.4E+02 0.0094 28.4 11.2 89 382-471 106-204 (393)
467 PF04840 Vps16_C: Vps16, C-ter 36.6 5.8E+02 0.013 27.6 21.9 278 192-515 3-287 (319)
468 PRK15490 Vi polysaccharide bio 36.3 3.2E+02 0.0069 32.2 11.3 82 18-101 17-98 (578)
469 TIGR00756 PPR pentatricopeptid 35.5 70 0.0015 20.6 3.9 23 81-103 4-26 (35)
470 cd02683 MIT_1 MIT: domain cont 35.0 1.9E+02 0.0041 23.9 6.9 31 7-37 4-34 (77)
471 PF13812 PPR_3: Pentatricopept 34.8 93 0.002 20.1 4.4 27 226-252 4-30 (34)
472 KOG2063 Vacuolar assembly/sort 34.3 1E+03 0.022 29.7 18.8 26 46-71 507-532 (877)
473 PF03745 DUF309: Domain of unk 34.1 2.3E+02 0.005 22.3 7.2 51 420-470 5-61 (62)
474 TIGR03362 VI_chp_7 type VI sec 34.1 6.2E+02 0.013 27.2 19.5 45 89-134 111-155 (301)
475 PF05053 Menin: Menin; InterP 33.4 3.2E+02 0.007 31.6 10.4 67 23-104 274-345 (618)
476 KOG0739 AAA+-type ATPase [Post 33.3 89 0.0019 33.0 5.6 17 449-465 56-72 (439)
477 KOG1114 Tripeptidyl peptidase 33.0 5.4E+02 0.012 31.9 12.4 80 397-476 1164-1259(1304)
478 KOG1920 IkappaB kinase complex 32.1 1.2E+03 0.026 29.9 26.2 53 418-477 1003-1055(1265)
479 PF10037 MRP-S27: Mitochondria 32.0 6.5E+02 0.014 28.5 12.7 109 151-267 72-184 (429)
480 PHA02537 M terminase endonucle 31.9 53 0.0012 33.5 3.8 32 114-145 172-212 (230)
481 PF13812 PPR_3: Pentatricopept 31.3 98 0.0021 20.0 4.0 25 417-441 4-28 (34)
482 cd02680 MIT_calpain7_2 MIT: do 31.2 89 0.0019 25.7 4.3 30 8-37 5-34 (75)
483 PF11846 DUF3366: Domain of un 31.1 1.5E+02 0.0032 29.4 6.9 49 60-109 128-176 (193)
484 KOG4014 Uncharacterized conser 29.9 5.5E+02 0.012 25.3 14.2 96 23-123 49-156 (248)
485 COG3014 Uncharacterized protei 29.7 7.6E+02 0.016 26.8 14.4 47 221-267 211-257 (449)
486 PF15297 CKAP2_C: Cytoskeleton 28.9 2.3E+02 0.005 30.8 8.0 62 396-457 119-184 (353)
487 PF13226 DUF4034: Domain of un 27.8 5.9E+02 0.013 26.9 10.8 74 50-123 7-89 (277)
488 KOG4151 Myosin assembly protei 27.5 2.2E+02 0.0047 34.2 8.2 100 13-112 57-162 (748)
489 cd02681 MIT_calpain7_1 MIT: do 27.5 1E+02 0.0023 25.4 4.1 30 8-37 5-34 (76)
490 PF04212 MIT: MIT (microtubule 27.3 1.4E+02 0.003 23.8 4.9 28 10-37 6-33 (69)
491 PF03745 DUF309: Domain of unk 26.5 3.2E+02 0.0069 21.5 6.6 52 13-65 3-61 (62)
492 COG3107 LppC Putative lipoprot 26.2 1.1E+03 0.023 27.4 13.5 47 256-309 201-247 (604)
493 PRK09591 celC cellobiose phosp 24.9 1.9E+02 0.004 25.6 5.5 77 497-573 27-103 (104)
494 smart00777 Mad3_BUB1_I Mad3/BU 24.7 5.3E+02 0.011 23.6 8.6 43 397-439 80-124 (125)
495 PHA02537 M terminase endonucle 24.1 1.1E+02 0.0024 31.2 4.5 21 87-107 93-113 (230)
496 cd02684 MIT_2 MIT: domain cont 23.6 1.6E+02 0.0034 24.2 4.6 30 8-37 5-34 (75)
497 PF04348 LppC: LppC putative l 23.4 27 0.00059 40.9 0.0 143 7-158 22-177 (536)
498 PF12931 Sec16_C: Sec23-bindin 23.4 9E+02 0.02 25.6 16.0 19 16-34 2-20 (284)
499 cd02677 MIT_SNX15 MIT: domain 23.2 1.6E+02 0.0035 24.2 4.5 30 8-37 5-34 (75)
500 PRK15490 Vi polysaccharide bio 23.2 4.1E+02 0.0088 31.3 9.3 76 58-135 23-98 (578)
No 1
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-107 Score=872.35 Aligned_cols=694 Identities=53% Similarity=0.885 Sum_probs=652.7
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
+||++..+|.++..+|+.++|+++++.++++|+++|+|++++.++|..+..+|+.++|..+.+.+++.++.++.|||.+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
.+++..++|++|++||+.|+.++|+|.++|++++.++.++|+++.......+.++..|.....|+.++.+++..|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHH
Q 045355 165 VEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 244 (900)
..+++.|++.....++ ....+++++.++...++.+.|.+++|++++........+........|.+++++|++++|..
T Consensus 163 ~~il~ef~~t~~~~~s--~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPS--KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCC--HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 9999999988764333 33489999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHh
Q 045355 245 LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRP 324 (900)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~ 324 (900)
.|+.++.++|++..++..+..+++- -.+..+....+|....+.+|....++++++.++.+.++...+..|++.
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk-------~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGK-------IKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 9999999999999999999999851 123445555899999999999999999999999999999999999999
Q ss_pred hhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCC--CCCCchhHHHHHHHHHHHHHHhCCHHHHHHH
Q 045355 325 LLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVALSK 402 (900)
Q Consensus 325 ~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~ 402 (900)
.+.+|+|++|.++.++|.++.+.+.+++++..|...+.....++..+ ..++|++.+|+++.++++|...|+++.|..+
T Consensus 314 ~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 314 LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999998877776533 3569999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccC-CcC
Q 045355 403 IDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQH 481 (900)
Q Consensus 403 ~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~-~~~ 481 (900)
++.||.++|+.++.|+.+|+|+.+.|++++|..+++++.++|..||+||++|++|+++++++++|.+++++||+++ +..
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999966 678
Q ss_pred CChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHH
Q 045355 482 NNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHK 561 (900)
Q Consensus 482 ~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~ 561 (900)
+++.+||||||.++.|++|+|+|++++|++.|+.|.+||.+|.+||||||+|||||||+|+||+||+|+|.|+++|+|++
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~ 553 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLR 553 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCC
Q 045355 562 AAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDP 641 (900)
Q Consensus 562 a~~~~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~d~d~ 641 (900)
|+++||+||++|||.|. .......+.++|| .|.||.++|+|++.++++++++.++.+......++++ .+...|.||
T Consensus 554 Aa~~Ai~iYl~l~d~p~-~~~~~~~~~~~ms-~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~--~~~~~d~~~ 629 (700)
T KOG1156|consen 554 AAKGAIEIYLRLHDSPN-MYTNKADEIEKMS-DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSG--KPVDIDEDP 629 (700)
T ss_pred HHHHHHHHHHHHhcCcc-cccccchhhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC--CCCCCCCcc
Confidence 99999999999999994 3345667788999 8999999999999999998887776655544444444 345678899
Q ss_pred chhhhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCCchhHHHH
Q 045355 642 HGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCL 711 (900)
Q Consensus 642 ~~~~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~~~~~~~~ 711 (900)
+|++|+.|++||++|.+|+.+++.+.++++++|++.||||.|+||+++|++|++++..++++||.+|.++
T Consensus 630 ~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~l~~s~ 699 (700)
T KOG1156|consen 630 FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPSLHTSM 699 (700)
T ss_pred hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=100.00 E-value=2.5e-87 Score=749.69 Aligned_cols=508 Identities=54% Similarity=0.900 Sum_probs=475.6
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 187 EHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKC 266 (900)
Q Consensus 187 ~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 266 (900)
++++++++.+.++.+.|++++|+++++......+|...++..+|.++.++|++++|...|+.+|++||+|..++.++..+
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCCh
Q 045355 267 LGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGK 346 (900)
Q Consensus 267 ~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~ 346 (900)
+++... +..++.+....+|+++...+|.+..++++++.++.++.|...+..|+...+.+|+|++|.+|.++|.++.+
T Consensus 82 ~g~~~~---~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 82 LGLQLQ---LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred Hhhhcc---cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 866542 44567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCC--CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045355 347 ADILEQLILELEHSIGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRIL 424 (900)
Q Consensus 347 ~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~ 424 (900)
...+++++..+...+...+.++... ..++|++.+|+++++|++|...|++++|++++++||+++|+.+++|+.+|+||
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999998877776543 57889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccC-CcCCChhhhhHHHHHHHHHHHHHHc
Q 045355 425 KHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQHNNLHDMQCMWYELASGESYFRQ 503 (900)
Q Consensus 425 ~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~-~~~~~l~~~q~~w~~~~lg~~y~r~ 503 (900)
.+.|++.+|.++++.|+++|+.||++|++|++|++|+|++++|++++++||+++ ++..++++|||+||+++.|++|.|+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999954 7889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 045355 504 GDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTE 583 (900)
Q Consensus 504 g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l~d~~~~~~~~ 583 (900)
|+++.|+++|+.|.++|.+|.+||||||+||+||||+|+|++||+|+|.|++||+|++|+.++|+||+.|||.|......
T Consensus 319 ~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~ 398 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGE 398 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765444
Q ss_pred -CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccc----cCCCCCCCCCCCCCCCCCchhhhccCCCcHHHHHH
Q 045355 584 -EDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSA----SGVSKSGKRHVKPVDPDPHGEKLLQVEDPLSEATK 658 (900)
Q Consensus 584 -~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~----~~~~k~~~~~~~~~d~d~~~~~l~~~~~~l~~A~~ 658 (900)
......+++++|+||.++|+||+++|++++++++++++.+ ++..+..+.++.+.|+||+|++|+.+++||++|++
T Consensus 399 ~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~~t~dPLe~A~k 478 (517)
T PF12569_consen 399 EQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLLKTEDPLEEAMK 478 (517)
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHhcCCcHHHHHHH
Confidence 3446778999999999999999998888887776554332 22334455678889999999999999999999999
Q ss_pred HHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHH
Q 045355 659 YLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHL 697 (900)
Q Consensus 659 ~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~ 697 (900)
|++||++++|++++||+++||||+|+|||++||+||++|
T Consensus 479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 999999999999999999999999999999999999985
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.3e-36 Score=374.43 Aligned_cols=606 Identities=17% Similarity=0.108 Sum_probs=472.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..+|..+|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34566788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
...|++++|+.+|++++..+|++..++..++.++...|++++|...++++++..|+++..++..+.++...|++++|+.
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~- 282 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE- 282 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred HHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 168 LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYR 247 (900)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 247 (900)
.+.+++... |.....++.+|.++...|++++|+..+.+++...|++...+..++.++...|++++|+..++
T Consensus 283 --~~~~~l~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 283 --TLQDALKSA-------PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred --HHHHHHHhC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555544 34456778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHHhh-
Q 045355 248 ALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVRPL- 325 (900)
Q Consensus 248 ~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~~~- 325 (900)
+++..+|.+...+..++.++ ...|++++|...|+++....|..... ..++..+...+++.+++..+.+..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAY--------LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999888 66899999999999999998876643 567777778889999998887776
Q ss_pred hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 045355 326 LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDE 405 (900)
Q Consensus 326 l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~ 405 (900)
..+..+.....+...|...++.+.+...+..... ..+..+ .+++.+|.++...|++++|+..|++
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEK---KQPDNA------------SLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCc------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3334445555666777777887776666665532 211111 1578899999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChh
Q 045355 406 AIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLH 485 (900)
Q Consensus 406 al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~ 485 (900)
+++.+|.+..++..+|.++...|++++|...|++++..+|.+.......+..+.+.|+.++|...+....+.......
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--
Confidence 999999999999999999999999999999999999999999888888888889999999999888776652221111
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 045355 486 DMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAG 565 (900)
Q Consensus 486 ~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~ 565 (900)
....++.+|...|++++|+..++.+.+.++...+..+.......+.+.....+..++. .+..+|....+...
T Consensus 569 ------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 569 ------PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK--LLALQPDSALALLL 640 (899)
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHhCCCChHHHHH
Confidence 2237899999999999999999988876654332221111111222222222222111 11122333333334
Q ss_pred HHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCch--
Q 045355 566 AIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHG-- 643 (900)
Q Consensus 566 ~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~d~d~~~-- 643 (900)
.+.+|....+.+. +. +..++..+ .+|+...
T Consensus 641 l~~~~~~~~~~~~--------------------A~------------~~~~~~~~----------------~~~~~~~~~ 672 (899)
T TIGR02917 641 LADAYAVMKNYAK--------------------AI------------TSLKRALE----------------LKPDNTEAQ 672 (899)
T ss_pred HHHHHHHcCCHHH--------------------HH------------HHHHHHHh----------------cCCCCHHHH
Confidence 4444433322210 00 00001000 1111111
Q ss_pred ---hhhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCC
Q 045355 644 ---EKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAED 704 (900)
Q Consensus 644 ---~~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~ 704 (900)
..++...+.+++|.++++.+.+..|++..++...+.+|.+.|++..|+..+++++..+|++
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 1222356778888888888888888888888888888888888888888888888888776
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-36 Score=376.77 Aligned_cols=622 Identities=16% Similarity=0.120 Sum_probs=495.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..++++++.+|+++++++.+|.++...|++++|+..+++++...|.+...+..+|.++
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 88 RSDREYREAIKCYRNAL-RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
...|++++|+..+.++. ...|....++..+|.++...|++++|+..|++++..+|++..+++.++.++...|++++|+.
T Consensus 101 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (899)
T TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180 (899)
T ss_pred HHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998765 34566778899999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELY 246 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 246 (900)
+++. ++..+ |....++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|...+
T Consensus 181 ~~~~---~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 181 LIDE---VLTAD-------PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred HHHH---HHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555 44443 4556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhh
Q 045355 247 RALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPL 325 (900)
Q Consensus 247 ~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~ 325 (900)
+.+++..|+++..+...+.++ ...|++++|...|++++...|... ....++..+...+++.++...+.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 322 (899)
T TIGR02917 251 DALLKKAPNSPLAHYLKALVD--------FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL 322 (899)
T ss_pred HHHHHhCCCCchHHHHHHHHH--------HHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999988888877776 557999999999999999998755 34556777778899999998887776
Q ss_pred -hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 045355 326 -LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKID 404 (900)
Q Consensus 326 -l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~ 404 (900)
..+..+.....++.++...++.+.+...+... +...+.. ..+++.+|.++...|++++|+.+|+
T Consensus 323 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPA---LGLDPDD------------PAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH---HhcCCCC------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33445666777788888888876666665554 3322211 1257889999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCCh
Q 045355 405 EAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNL 484 (900)
Q Consensus 405 ~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l 484 (900)
++++.+|+++.++..+|.++...|++++|+..++++++.+|.........+..+.+.|++++|++.+..+.........
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 466 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS- 466 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH-
Confidence 9999999999999999999999999999999999999999998877777888899999999999999887763222221
Q ss_pred hhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHH
Q 045355 485 HDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAA 564 (900)
Q Consensus 485 ~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~ 564 (900)
....+|.+|...|++++|++.|+++.+..+......+.........+.+..-+.. +...+..+|....+..
T Consensus 467 -------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~--~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 467 -------LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR--FEKVLTIDPKNLRAIL 537 (899)
T ss_pred -------HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHhCcCcHHHHH
Confidence 2347899999999999999999999887655433222222222222222222211 1222233444455555
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCch-
Q 045355 565 GAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHG- 643 (900)
Q Consensus 565 ~~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~d~d~~~- 643 (900)
..+.+|....+.. ++... .++..... +.+.+...
T Consensus 538 ~l~~~~~~~~~~~--------------------~A~~~------------~~~~~~~~-------------~~~~~~~~~ 572 (899)
T TIGR02917 538 ALAGLYLRTGNEE--------------------EAVAW------------LEKAAELN-------------PQEIEPALA 572 (899)
T ss_pred HHHHHHHHcCCHH--------------------HHHHH------------HHHHHHhC-------------ccchhHHHH
Confidence 5555554322110 00000 00000000 11111111
Q ss_pred -hhhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Q 045355 644 -EKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHK 717 (900)
Q Consensus 644 -~~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (900)
...+...+.+++|..+++.+.+..|++++.|...+.+|.+.|++..|+.+++++++++|+++..+..+..+...
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 12223567899999999999999999999999999999999999999999999999999998887777666543
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-39 Score=343.19 Aligned_cols=435 Identities=16% Similarity=0.151 Sum_probs=344.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
....+..+...|+.|+|++|.+.+..+...+|.+.+.+..++.++++..+++.....-..+++..|.-.+++.++|.++.
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 44578889999999999999999999999999888777777888888778888777777788888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|++++|+..|+.++++.|++.++|.++|.++...|+.+.|.++|..+++++|+...+...+|..+...|+..+|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~--- 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK--- 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH---
Confidence 88888888888888888888888888888888888888888888888888888887777777888887788888877
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRA 248 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 248 (900)
.+|.+++... |...-+|.++|.++..+|+...|+.+|+++++++|....+|.++|.+|...+.+++|+.+|.+
T Consensus 205 ~cYlkAi~~q-------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 205 ACYLKAIETQ-------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred HHHHHHHhhC-------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 6777777765 455567778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchh-hhhchhhcccchHHHHHHHHhHHhh-h
Q 045355 249 LLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSA-VKRIPLDFLQGEKFREAAFNYVRPL-L 326 (900)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~l~l~~~~~~~~~~a~~~~~~~~-l 326 (900)
++...|++..++.+++.+| +.+|+++-|+..|+++++..|+.+. ...++..+-..|+..++...|.+.+ +
T Consensus 278 Al~lrpn~A~a~gNla~iY--------yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIY--------YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHhcCCcchhhccceEEEE--------eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 8888888887777777776 6677888888888888888777663 3556666667777778887777777 6
Q ss_pred hcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 045355 327 TKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 327 ~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~a 406 (900)
....+....+|+.+|.+.++ ++.+..-|..++...|.+.. +..+||.+|.+.|++++|+..|+++
T Consensus 350 ~p~hadam~NLgni~~E~~~---~e~A~~ly~~al~v~p~~aa------------a~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGK---IEEATRLYLKALEVFPEFAA------------AHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred CCccHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhChhhhh------------hhhhHHHHHHhcccHHHHHHHHHHH
Confidence 66677777888888877776 44445555555666555554 6778888888888888888888888
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 407 IEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 407 l~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
|.+.|+..+++.++|..|..+|+...|+.+|.+|+.++|.-....+.++..+-..|++.+|+.-.....+
T Consensus 415 lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 415 LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 8888888888888888888888888888888888888888777777778888888888888877766666
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2e-39 Score=344.58 Aligned_cols=413 Identities=17% Similarity=0.216 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++.....+++..++++....-..+++++|.-.+++..+|.++...|++++|+.+|+.++++.|+..++|.++|.++.
T Consensus 82 ~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~ 161 (966)
T KOG4626|consen 82 TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALV 161 (966)
T ss_pred ccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHH
Confidence 34445556667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|+.+.|.++|..+++++|+...+...+|.+...+|+.++|..+|.++++..|....+|.++|.++...|+...|+
T Consensus 162 ~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ai--- 238 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAI--- 238 (966)
T ss_pred hcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRA 248 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 248 (900)
..|++++..+ |....+|+++|.+|.+.+.+++|+.+|.+++...|+...++-++|.+|..+|..+-|+..|++
T Consensus 239 q~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 239 QHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 7888899887 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhh-h
Q 045355 249 LLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPL-L 326 (900)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~-l 326 (900)
++++.|+.+.+|.+++.++ -+.|+..+|...|.+++...|... ....++..+.+.+.++++...|...+ .
T Consensus 312 al~~~P~F~~Ay~NlanAL--------kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANAL--------KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHhcCCCchHHHhHHHHHH--------HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999999999999999998 567999999999999999999776 55789999999999999999999988 6
Q ss_pred hcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 045355 327 TKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 327 ~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~a 406 (900)
.++....+++|+.+|.+.++ +.+++..|..++.+.|.+.. ++.++|..|-.+|+.+.|+..|.+|
T Consensus 384 ~p~~aaa~nNLa~i~kqqgn---l~~Ai~~YkealrI~P~fAd------------a~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGN---LDDAIMCYKEALRIKPTFAD------------ALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred ChhhhhhhhhHHHHHHhccc---HHHHHHHHHHHHhcCchHHH------------HHHhcchHHHHhhhHHHHHHHHHHH
Confidence 67788899999999999998 66778888888998888776 8999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHH
Q 045355 407 IEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSEC 454 (900)
Q Consensus 407 l~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~ 454 (900)
|..+|+..+++.++|.+|+..|+..+|+..|+.++.++|+-|.....+
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 999999999999999999999999999999999999999998444333
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-32 Score=347.76 Aligned_cols=492 Identities=13% Similarity=0.060 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHH-------
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCW------- 80 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~------- 80 (900)
..+.++.++......++++.|.+.+++++..+|++++++..++.++...|+.++|...++++++.+|+++.++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4556899999888999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 81 ---------HVYGLLYRSDREYREAIKCYRNALRIDPDNIEI-LRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIG 150 (900)
Q Consensus 81 ---------~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (900)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..++++++.+|++..++..
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 556778999999999999999999999887643 2222333345699999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhc--------------c-CCC--------------CCcchhchhH-----------
Q 045355 151 FAVSHHLNSNGSKAVEILEAYEGTLE--------------D-DYP--------------PDNERCEHGE----------- 190 (900)
Q Consensus 151 la~~~~~~g~~~~A~~~l~~~~~~l~--------------~-~~~--------------~~~~~~~~~~----------- 190 (900)
+|.++...|++++|+..++.....-. . ... +.........
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999977665432100 0 000 0000000000
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--H----
Q 045355 191 ----MLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSY--Y---- 260 (900)
Q Consensus 191 ----~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~---- 260 (900)
....+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++.+|++... +
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 112347888999999999999999999999999999999999999999999999999999999987531 1
Q ss_pred --------HHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHHhh-hhcCC
Q 045355 261 --------EGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVRPL-LTKGV 330 (900)
Q Consensus 261 --------~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~~~-l~~~~ 330 (900)
..++.++ ...|++++|+..|++++...|.+... ..++..+...+++.+|...|.+.+ ..+..
T Consensus 347 ~~~~~~~~~~~g~~~--------~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 347 KVNRYWLLIQQGDAA--------LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HhhhHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1223333 45899999999999999999987644 567888888999999999998888 44556
Q ss_pred ChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 045355 331 PSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHT 410 (900)
Q Consensus 331 p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~ 410 (900)
+.....+..+|... ..+.+...+..+...... .. ...........+..+|..+...|++++|+..|+++++.+
T Consensus 419 ~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~---~~---~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 419 TNAVRGLANLYRQQ-SPEKALAFIASLSASQRR---SI---DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHH---HH---HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67777788887543 444444444332111000 00 000000011256789999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCC--Chhhhh
Q 045355 411 PTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHN--NLHDMQ 488 (900)
Q Consensus 411 P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~--~l~~~q 488 (900)
|+++.+++.+|.+|...|++++|+..|+++++.+|.++......+.++...++.++|+..+........... .+...-
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 999999999999999999999999999999999999997777778888899999999998876654221111 110000
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 045355 489 CMWYELASGESYFRQGDLGRALKKFL 514 (900)
Q Consensus 489 ~~w~~~~lg~~y~r~g~~~~Alk~~~ 514 (900)
........+.++...|++++|++.++
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01123578999999999999998875
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-30 Score=330.53 Aligned_cols=570 Identities=13% Similarity=0.052 Sum_probs=420.4
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHH----------------HHHHHHHHhCCCHHHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETL----------------SMKGLTLNCMDRKSEAYELVRLG 69 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~----------------~~lg~~~~~~g~~~eA~~~~~~a 69 (900)
|.....++..+..+...|++++|.+.++++++.+|+++.++ ..+|.++...|++++|+..|+++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33445667777888899999999999999999999998764 55677899999999999999999
Q ss_pred HHcCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------
Q 045355 70 VKNDIKSHV-CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP------ 142 (900)
Q Consensus 70 l~~~p~~~~-~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 142 (900)
+..+|.+.. +...+..+....|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 999888754 2223344445579999999999999999999999999999999999999999999998765332
Q ss_pred ----------------------------CCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 143 ----------------------------NHRMN--------------------WIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 143 ----------------------------~~~~~--------------------~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
+.... ...+|.++...|++++|+ ..|.++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~---~~l~~a 295 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAI---PELQQA 295 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHH---HHHHHH
Confidence 11100 013367788889999999 556666
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHH--------------HHHHHHHHHHHcCCHH
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLA--------------YKEQEVSLLVKIGRLE 240 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~--------------~~~~la~~~~~~g~~~ 240 (900)
+..+ |....++..+|.++...|++++|+..|+++++..|++.. ....+|.++...|+++
T Consensus 296 L~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 296 VRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 6655 556789999999999999999999999999999887532 2235688999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHH
Q 045355 241 EAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAF 319 (900)
Q Consensus 241 eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~ 319 (900)
+|+..|++++..+|++..++..++.++ ...|++++|+..|++++...|.+... ..+...+. .+..+++..
T Consensus 369 eA~~~~~~Al~~~P~~~~a~~~Lg~~~--------~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 369 QAERLYQQARQVDNTDSYAVLGLGDVA--------MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 999999999999999999999999998 67899999999999999999987644 33444443 345566554
Q ss_pred HhHHhhhhcC-----------CChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHH
Q 045355 320 NYVRPLLTKG-----------VPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQ 388 (900)
Q Consensus 320 ~~~~~~l~~~-----------~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~ 388 (900)
.+ ..+.... ....+..++.++...++.+.+ +..+.+.+...|.. .|+++.+|.
T Consensus 440 ~l-~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA---~~~~~~Al~~~P~~------------~~~~~~LA~ 503 (1157)
T PRK11447 440 FI-ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA---AELQRQRLALDPGS------------VWLTYRLAQ 503 (1157)
T ss_pred HH-HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH---HHHHHHHHHhCCCC------------HHHHHHHHH
Confidence 33 2221110 112234455666667775444 44455555544332 347899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh--h--------HHHHHHHHH
Q 045355 389 HYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR--Y--------VNSECVKRM 458 (900)
Q Consensus 389 ~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~--~--------l~~~~a~~~ 458 (900)
+|...|++++|+..++++++..|.+++.++.+|..+...|++++|+..++++.....++. . .....+..+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998654322221 1 112345667
Q ss_pred HHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhc
Q 045355 459 LQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKM 538 (900)
Q Consensus 459 l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~ 538 (900)
...|+.++|++++... +. .. +....+|.+|.++|++++|++.|++++...++..
T Consensus 584 ~~~G~~~eA~~~l~~~---p~-~~--------~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~-------------- 637 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQ---PP-ST--------RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA-------------- 637 (1157)
T ss_pred HHCCCHHHHHHHHHhC---CC-Cc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------
Confidence 8899999999987721 11 11 1234789999999999999999999888654322
Q ss_pred cHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 045355 539 TLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKN 618 (900)
Q Consensus 539 ~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~ 618 (900)
.+...++.+|....+... +.+.-++ .
T Consensus 638 ----------------------~a~~~la~~~~~~g~~~e--------------------A~~~l~~------------l 663 (1157)
T PRK11447 638 ----------------------DARLGLIEVDIAQGDLAA--------------------ARAQLAK------------L 663 (1157)
T ss_pred ----------------------HHHHHHHHHHHHCCCHHH--------------------HHHHHHH------------H
Confidence 222344444443322210 0000000 0
Q ss_pred hhccccCCCCCCCCCCCCCCC-CCch----hhhccCCCcHHHHHHHHHHHHhhCCCCcc------hhhhhhhhhHhhhhH
Q 045355 619 EESSASGVSKSGKRHVKPVDP-DPHG----EKLLQVEDPLSEATKYLKLLQKNSPDSLE------THLLSFEVNIRKQKI 687 (900)
Q Consensus 619 ~~~~~~~~~k~~~~~~~~~d~-d~~~----~~l~~~~~~l~~A~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~k~ 687 (900)
. ...| ++.. ..+....+..++|.++++.++...|+++. .+...+.++.++|++
T Consensus 664 ----l------------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 664 ----P------------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred ----h------------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 0 0011 1111 11223467899999999999998876553 566679999999999
Q ss_pred HHHHHHHHHHHh---hcCCCch
Q 045355 688 LLALQAVKHLLR---LNAEDPE 706 (900)
Q Consensus 688 ~~al~~~~~~~~---~~~~~~~ 706 (900)
..|++.|++++. +.|..|.
T Consensus 728 ~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 728 QQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HHHHHHHHHHHhhcCCCCCCCC
Confidence 999999999985 4455454
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-29 Score=300.52 Aligned_cols=433 Identities=14% Similarity=0.070 Sum_probs=296.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.+...|..++..|+|++|+..|++++...|+ +..+..+|.+|..+|++++|+..+++++.++|++..+|+.+|.+|..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4668899999999999999999999999996 778999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
|++++|+..|..++..++.+......+...... ..+......++...|.+...+..++..+... ....+. ..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~ 279 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP---AG 279 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch---hh
Confidence 999999999988887766544332222111111 3344555666666776665555555433211 111111 11
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHH---HHcCCHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHcCCHHHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLL---EECGSFERALAEMHKKESK---IVDKLAYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~Al~~l~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~ 244 (900)
+......+ +.....+..++..+ ...+++++|+..|++++.. .|....++..+|.++..+|++++|+.
T Consensus 280 ~~~~~~~~-------~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 280 LEDSNELD-------EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhcccccc-------cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111111 11122333333332 2235666666666666654 35555666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHH
Q 045355 245 LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVR 323 (900)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~ 323 (900)
.|+++++.+|++...+..++.++ ...|++++|+..|+++++..|.+... ..++..+...+++.+++..|.+
T Consensus 353 ~~~kal~l~P~~~~~~~~la~~~--------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 353 DLSKSIELDPRVTQSYIKRASMN--------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666666666665 44566666666666666666654422 2333333333333333333322
Q ss_pred hhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 045355 324 PLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 324 ~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~ 403 (900)
. +...|.. .++++.+|.++...|++++|+..|
T Consensus 425 a------------------------------------l~l~P~~------------~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 425 S------------------------------------IDLDPDF------------IFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred H------------------------------------HHcCccC------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 2221111 125788999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh-------HHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 404 DEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY-------VNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 404 ~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~-------l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
++++...|.++.++..+|.++...|++++|+..|+++++++|.+.. +...+..++...|++++|++++....+
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987531 112233344456999999999887766
Q ss_pred -cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhh
Q 045355 477 -DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 477 -~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~ 524 (900)
++.. .+....+|++|.++|++++|++.|+++.++.....
T Consensus 537 l~p~~---------~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 537 IDPEC---------DIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 3221 12345889999999999999999999988865533
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-29 Score=278.16 Aligned_cols=468 Identities=15% Similarity=0.097 Sum_probs=377.1
Q ss_pred HHHHHHHHHhhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Q 045355 12 LFKLIVKSYETKQ--YKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS-HVCWHVYGLLYR 88 (900)
Q Consensus 12 l~~~a~~~~~~g~--~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~ 88 (900)
++-++..+...|. ++.|...|..+++..|++.-++..+|.+.+..|+|-.|+.+|++++.++|.. ++....+|.|+.
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW 210 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence 3444444555544 5999999999999999999999999999999999999999999999998875 456778999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD---LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
.+|+.+.|+..|.++++++|.+..++..||.+-....+ +..++..+.++...+|.+|.+...++..++..|+|..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 99999999999999999999999999999988776654 677899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK-LAYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~ 244 (900)
.+........... +..++.++.+|+.|..+|+|++|..+|.++++.++++ .-.++.+|.+++..|+++.|..
T Consensus 291 ~la~~ai~~t~~~-------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 291 HLAEHAIKNTENK-------SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHhhhhh-------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 6555433322111 5667889999999999999999999999999999998 7788999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHH
Q 045355 245 LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVR 323 (900)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~ 323 (900)
+|+++++.+|++......||.+|.-.. -.....+.|..+..++....|.+... ..++..+...+-+. ++..|..
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~----~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~ 438 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSA----KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGN 438 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhh----hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHH
Confidence 999999999999999999999883221 11335689999999999999877644 44444444433333 3666655
Q ss_pred hh---hhc---CCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 324 PL---LTK---GVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 324 ~~---l~~---~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
+. ... -.|...++++.++...+....+...+......+.... .+ .+..++.+...|++|.++...++++
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~-n~----de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA-NK----DEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc-Cc----cccccchhHHHHHHHHHHHhhhhhh
Confidence 54 122 2457889999999999987777777666654422110 00 0101222446899999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD 477 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~ 477 (900)
.|.+.|...++..|..+++|..+|.+....++..+|..++..++..|..++.+++..+.+++....+..|.+.+....+.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888766555442
Q ss_pred CCcCCChhhhhHHHHHHHHHHHHHH
Q 045355 478 GDQHNNLHDMQCMWYELASGESYFR 502 (900)
Q Consensus 478 ~~~~~~l~~~q~~w~~~~lg~~y~r 502 (900)
.....+.| ....+|++|++
T Consensus 594 ~~~~~D~Y------sliaLGN~~~~ 612 (1018)
T KOG2002|consen 594 TSTKTDAY------SLIALGNVYIQ 612 (1018)
T ss_pred hccCCchh------HHHHhhHHHHH
Confidence 22222222 24477887765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.2e-27 Score=283.92 Aligned_cols=404 Identities=11% Similarity=0.032 Sum_probs=336.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
+..+..-+..++..|++.+|+..++.++...|+++++++.+|.+....|++++|+..+++++..+|+++.+|..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|++++|+..|++++.++|++..++..++.++...|++++|+..+++++...|++...+..++ .+...|++++|+..+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887764 478899999999554
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHH----HHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEE----AAE 244 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~ 244 (900)
. +.+...+.. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+.
T Consensus 201 ~---~~l~~~~~~------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 201 R---ALLPFFALE------RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred H---HHHhcCCCc------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 4 445443321 123445678889999999999999999999999999999999999999999986 899
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHh
Q 045355 245 LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRP 324 (900)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~ 324 (900)
.|++++..+|++..++..++.++ ...|++++|+..+++++...|.+..
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l--------~~~g~~~eA~~~l~~al~l~P~~~~------------------------ 319 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADAL--------IRTGQNEKAIPLLQQSLATHPDLPY------------------------ 319 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHH------------------------
Confidence 99999999999999999999998 6689999999999998777665431
Q ss_pred hhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 045355 325 LLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKID 404 (900)
Q Consensus 325 ~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~ 404 (900)
+++.+|.+|...|++++|+..|+
T Consensus 320 ---------------------------------------------------------a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 320 ---------------------------------------------------------VRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 45678899999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHH-----------HH
Q 045355 405 EAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTA-----------AL 473 (900)
Q Consensus 405 ~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~-----------~~ 473 (900)
+++..+|..+..+..+|.++...|++++|+..|+++++.+|.+..-... .....++++++.+ ++
T Consensus 343 ~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~-----ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 343 QLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE-----EGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH-----HHHHHHHHHHHhcCCccchhhHHHHH
Confidence 9999999998888888999999999999999999999999988621111 1112223333322 11
Q ss_pred hcccCCcCCChhhhhHHHHH----HHHHHHHHHcCChHHHHHHHHHH
Q 045355 474 FTKDGDQHNNLHDMQCMWYE----LASGESYFRQGDLGRALKKFLAV 516 (900)
Q Consensus 474 ~~~~~~~~~~l~~~q~~w~~----~~lg~~y~r~g~~~~Alk~~~~v 516 (900)
..++.+...+.++..+-|-. +.+-|.-+|-..-++++..+-.+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (656)
T PRK15174 418 AGRQSGIERDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADI 464 (656)
T ss_pred hcccccCChHHHHHHHHhhHHHHHHHHHHHHhcccchhhHHHHHhhh
Confidence 12222333445555555542 45666677777777777776554
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-26 Score=261.39 Aligned_cols=485 Identities=13% Similarity=0.099 Sum_probs=372.6
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH-GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
+-|+....++.+|...|..|+|..|+.+|+.+|..+|.. ++....+|.|+..+|+.+.|+..|.++++++|.+..++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 346677889999999999999999999999999999975 5677889999999999999999999999999999999999
Q ss_pred HHHHHHhcc---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Q 045355 83 YGLLYRSDR---EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP---NHRMNWIGFAVSHH 156 (900)
Q Consensus 83 lg~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~ 156 (900)
||.+-.... .+..++..+.++...+|.||.++..|+..++..|+|+.+......++...- ...+.++.+|.+|+
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 998766554 478899999999999999999999999999999999999999999988653 34467999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc
Q 045355 157 LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI 236 (900)
Q Consensus 157 ~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~ 236 (900)
.+|++++|. ..|.+++..++. .+.-.++.+|++++..|+++.+..+|+++++..|++......+|.+|...
T Consensus 319 a~Gd~ekA~---~yY~~s~k~~~d------~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 319 AQGDFEKAF---KYYMESLKADND------NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred hhccHHHHH---HHHHHHHccCCC------CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 999999999 677777776542 23467789999999999999999999999999999999999999999988
Q ss_pred C----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhc------Ccchhhhhchh
Q 045355 237 G----RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQY------TWSSAVKRIPL 306 (900)
Q Consensus 237 g----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~l~l 306 (900)
+ ..+.|..+..++++..|.+..+|..++.++. .++.-..+..|..+.... +.......++.
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e---------~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE---------QTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH---------hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 6 6688999999999999999999999999973 445555577777776431 22234466777
Q ss_pred hcccchHHHHHHHHhHHhhhh---cCCC--------hhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCC------
Q 045355 307 DFLQGEKFREAAFNYVRPLLT---KGVP--------SLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPG------ 369 (900)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~l~---~~~p--------~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~------ 369 (900)
..+..+.+..|...+..+.-. ...+ .+-.+++.++....+...++++ |...+...|.+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~---Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM---YKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHCchhHHHHHHhh
Confidence 777788888888877766522 1111 1345666666665554444433 3333444333332
Q ss_pred --------------------CCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHH--
Q 045355 370 --------------------REEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT--VIDLYSVKSRILK-- 425 (900)
Q Consensus 370 --------------------~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~--~~~~~~~la~i~~-- 425 (900)
.....+|. ++-++|.+|.....+..|.+-|+..++...+ ++-+.+.+|.++.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~----arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPN----ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcH----HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 00011111 3344555555555555555555444443332 2334445555543
Q ss_pred ----------HcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHH
Q 045355 426 ----------HAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELA 495 (900)
Q Consensus 426 ----------~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~ 495 (900)
..+.+++|++.|.+++..||.|.+.-+-++..+...|++.+|..+++..........+++. .
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l--------N 685 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL--------N 685 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee--------e
Confidence 3456788999999999999999988888888888999999999999877664332222332 8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhh
Q 045355 496 SGESYFRQGDLGRALKKFLAVEKHYA 521 (900)
Q Consensus 496 lg~~y~r~g~~~~Alk~~~~v~~~~~ 521 (900)
+|.+|..+|+|..|+++|+.+.+.|.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998885
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.2e-25 Score=271.93 Aligned_cols=472 Identities=12% Similarity=0.012 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
...|..+..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---
Confidence 34678888888889999999999999999999999999999999999999999999999999999998888877776
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 90 DREYREAIKCYRNALRIDPDNIEILRDLSLL--------QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
+++++|+..|++++..+|++..++..++.+ |.+.++...+++ .+.+..+|......+.+..+|..+|+|
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999999998 777665555555 444444444555666779999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE-CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLE 240 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (900)
++|+..+..+. +.. +........++.+|.. +++ +.++.++...++ +++.++..++..|...|+.+
T Consensus 199 ~~Ai~lL~~L~---k~~-------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 199 SQADTLYNEAR---QQN-------TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHHHHHHH---hcC-------CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHH
Confidence 99996655544 433 3334677888888888 477 888888664332 67888999999999999999
Q ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHhcccc--------------------------cC------------------
Q 045355 241 EAAELYRALLSM---NPDNYSYYEGLQKCLGLYR--------------------------DN------------------ 273 (900)
Q Consensus 241 eA~~~~~~al~~---~p~~~~~~~~l~~~~~l~~--------------------------~~------------------ 273 (900)
+|...+++.-.. .|++......++....... ..
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 999888775433 4556555555555432100 00
Q ss_pred ------CCCCCCcHHHHHHHHHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhhhhcC----CChhhhchhhhhc
Q 045355 274 ------GNYSSGEIDELDALYKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPLLTKG----VPSLFSDLSPLYD 342 (900)
Q Consensus 274 ------~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~----~p~~~~~L~~ly~ 342 (900)
.....+...++......+....|.+. ....+....+..++++++...+....-.++ .+++...|+.+|.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 00111222223333333333333222 223344444456677777776666653122 2334446777776
Q ss_pred CCChH---HHHHH----------------------HHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 343 QPGKA---DILEQ----------------------LILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 343 ~~~~~---~~~~~----------------------~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
..... ..+.. ....+...+... ++.....+++.+|.++.. |+.+
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----------p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM----------SPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC----------CCCCCHHHHHHHHHHHHh-CCcH
Confidence 55431 11111 111122222111 110122367889988887 8888
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD 477 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~ 477 (900)
+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.+... ...+..+++.|+.++|+..+....+.
T Consensus 494 eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~-~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDL-LAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89999999999998754 36667888888999999999999988776666543 45567778889999999888777663
Q ss_pred CCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 045355 478 GDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYAD 522 (900)
Q Consensus 478 ~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~ 522 (900)
...... ....++....++|++++|+..|+++++..+.
T Consensus 572 ~P~~~~--------l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 572 GLGDNA--------LYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred CCccHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 211111 1124455666779999999999888887653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=6.3e-27 Score=278.71 Aligned_cols=348 Identities=14% Similarity=0.117 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH---------
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV--------- 78 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~--------- 78 (900)
....++..+..+...|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|..+...++....
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL 238 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999888766544332211
Q ss_pred ---------------------HHHHHHHHH------------------------------------HhccCHHHHHHHHH
Q 045355 79 ---------------------CWHVYGLLY------------------------------------RSDREYREAIKCYR 101 (900)
Q Consensus 79 ---------------------~~~~lg~~~------------------------------------~~~g~~~eAi~~~~ 101 (900)
.+..+|..+ ...++|++|+.+|+
T Consensus 239 l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 111111111 01235566666666
Q ss_pred HHHhh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 102 NALRI---DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 102 ~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
+++.. .|....++..+|.++..+|++++|+..+++++.++|++...|+.+|.++...|++++|+ ..+.+++..+
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~---~~~~~al~~~ 395 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE---EDFDKALKLN 395 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHhC
Confidence 66654 24455556666666666666666666666666666666666666666666666666666 3333344433
Q ss_pred CCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045355 179 YPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYS 258 (900)
Q Consensus 179 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 258 (900)
|.+..+++.+|.++...|++++|+..|++++..+|++...+..+|.++..+|++++|+..|++++...|+++.
T Consensus 396 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 396 -------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 3344566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchh
Q 045355 259 YYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLS 338 (900)
Q Consensus 259 ~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~ 338 (900)
.+..++.++ ...|++++|+..|++++...|......
T Consensus 469 ~~~~lg~~~--------~~~g~~~~A~~~~~~Al~l~p~~~~~~------------------------------------ 504 (615)
T TIGR00990 469 VYNYYGELL--------LDQNKFDEAIEKFDTAIELEKETKPMY------------------------------------ 504 (615)
T ss_pred HHHHHHHHH--------HHccCHHHHHHHHHHHHhcCCcccccc------------------------------------
Confidence 666666655 445556666666666555444321110
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHcCCCchHHH
Q 045355 339 PLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFL-AQHYDRRGQYDVALSKIDEAIEHTPTVIDLY 417 (900)
Q Consensus 339 ~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~l-a~~y~~~g~~~~Al~~~~~al~~~P~~~~~~ 417 (900)
.. .+.++.. +.++...|++++|+.++++++..+|++..++
T Consensus 505 -------------------------------------~~--~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 505 -------------------------------------MN--VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred -------------------------------------cc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 00 0011222 2333457999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 418 SVKSRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 418 ~~la~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
..+|+++..+|++++|+.+|++++++.+...
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999999977644
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.5e-24 Score=262.34 Aligned_cols=497 Identities=10% Similarity=0.005 Sum_probs=331.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL- 86 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~- 86 (900)
.....+..+..++..|++++|+..++++++.+|++...+..++.+ +++++|+..|++++..+|++..++..++..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~ 152 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSE 152 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHh
Confidence 344557777777888899999999999988888888877777666 888888888888888888877766555555
Q ss_pred ---------------------------------------HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hcC
Q 045355 87 ---------------------------------------YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ-MRD 126 (900)
Q Consensus 87 ---------------------------------------~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 126 (900)
|..+|+|++|+..+.++++..|.+...+..++.+|.+ +++
T Consensus 153 ~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~ 232 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD 232 (987)
T ss_pred hccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH
Confidence 3344455555555555555555555555555554444 244
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCc-----------------------
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDN----------------------- 183 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~----------------------- 183 (900)
+++..+++..++ +++..+..++..+...|+.++|...+..+......++.+..
T Consensus 233 -~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 233 -DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred -HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 444444332111 45555666667777777777777666554433222111000
Q ss_pred --------------------------------------------------------------chhchhHHHHHHHHHHHH
Q 045355 184 --------------------------------------------------------------ERCEHGEMLLYKISLLEE 201 (900)
Q Consensus 184 --------------------------------------------------------------~~~~~~~~~~~la~~~~~ 201 (900)
..|.+.+.+...+....+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 001223333444445555
Q ss_pred cCCHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHcCC-------------------------HHH---HHHHHHHHH
Q 045355 202 CGSFERALAEMHKKESKIVDK---LAYKEQEVSLLVKIGR-------------------------LEE---AAELYRALL 250 (900)
Q Consensus 202 ~g~~~~Al~~l~~al~~~p~~---~~~~~~la~~~~~~g~-------------------------~~e---A~~~~~~al 250 (900)
.|++++|...|+++....++. ..+...++.+|...+. ..+ +...+.+++
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 666666666666665542221 2233345555544433 211 223334444
Q ss_pred HhCCC--CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhc
Q 045355 251 SMNPD--NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTK 328 (900)
Q Consensus 251 ~~~p~--~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~ 328 (900)
...|. ++.++..++.|+ .. ++..+|+..|.++....|.+.....++..+...+++.+++..|.+.....
T Consensus 469 ~~~p~~~~~~a~~~LG~~l--------~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCY--------RD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred ccCCCCCCHHHHHHHHHHH--------Hh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 44566 777777777777 33 67888999999999999987654444555567899999999998866544
Q ss_pred CCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 045355 329 GVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIE 408 (900)
Q Consensus 329 ~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~ 408 (900)
..+.....++.++...++.+.+...+... +...+... . .+..++......|++++|+..|+++++
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qA---L~l~P~~~----------~--l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQA---EQRGLGDN----------A--LYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHH---HhcCCccH----------H--HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44555667777777888876666665555 33322211 1 344555566667999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhh
Q 045355 409 HTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQ 488 (900)
Q Consensus 409 ~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q 488 (900)
.+|+ +.++..+|.++...|++++|+.+|++++.++|+++.+...++..+...|++++|++.+....+..+....
T Consensus 605 l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~----- 678 (987)
T PRK09782 605 IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA----- 678 (987)
T ss_pred hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----
Confidence 9997 9999999999999999999999999999999999988888999999999999999999887773222221
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHH
Q 045355 489 CMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVE 545 (900)
Q Consensus 489 ~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~ 545 (900)
+...+|.+|..+|++++|+..|++++..-++...-++..-..-.++...+.+.+
T Consensus 679 ---a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 679 ---LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 234899999999999999999999998877665544433333334443444333
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=4.8e-25 Score=261.62 Aligned_cols=398 Identities=11% Similarity=0.049 Sum_probs=323.1
Q ss_pred HHhhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q 045355 19 SYETKQYKKGLKAADAILKK---FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYRE 95 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 95 (900)
+..+.+|+.-.-++.+.-+. ..++...+...+..+.+.|++++|+.+++..+...|.+..+++.+|.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34455565444444443332 223344556677788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 045355 96 AIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l 175 (900)
|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|++..++..++.++...|++++|+..+. +.+
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~---~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR---TQA 171 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995554 444
Q ss_pred ccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 176 EDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV-DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
...| ....++...+ .+...|++++|+..+++++...| ........++.++...|++++|+..|++++..+|
T Consensus 172 ~~~P-------~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 172 QEVP-------PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HhCC-------CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4332 2334554443 47889999999999999998875 4444556678899999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccccCCCCCCCcHHH----HHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCC
Q 045355 255 DNYSYYEGLQKCLGLYRDNGNYSSGEIDE----LDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGV 330 (900)
Q Consensus 255 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~ 330 (900)
+++..+..++.++ ...|++++ |...|++++...|++.
T Consensus 244 ~~~~~~~~Lg~~l--------~~~G~~~eA~~~A~~~~~~Al~l~P~~~------------------------------- 284 (656)
T PRK15174 244 DGAALRRSLGLAY--------YQSGRSREAKLQAAEHWRHALQFNSDNV------------------------------- 284 (656)
T ss_pred CCHHHHHHHHHHH--------HHcCCchhhHHHHHHHHHHHHhhCCCCH-------------------------------
Confidence 9999999999988 45676664 6777777766555432
Q ss_pred ChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 045355 331 PSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHT 410 (900)
Q Consensus 331 p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~ 410 (900)
.++..+|.++...|++++|+..+++++..+
T Consensus 285 --------------------------------------------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 285 --------------------------------------------------RIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred --------------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 156788999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhH
Q 045355 411 PTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQC 489 (900)
Q Consensus 411 P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~ 489 (900)
|+++.++..+|.++...|++++|+..|++++..+|.+.......+..+...|+.++|++.+....+ .+...
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-------- 386 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-------- 386 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--------
Confidence 999999999999999999999999999999999999876666667778899999999999877766 33211
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhh
Q 045355 490 MWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRK 537 (900)
Q Consensus 490 ~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk 537 (900)
...+.+|...|.......+........+-.-|.+.
T Consensus 387 -------------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 421 (656)
T PRK15174 387 -------------PQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQ 421 (656)
T ss_pred -------------hhhHHHHHHHHHHHHHhcCCccchhhHHHHHhccc
Confidence 13345677777776666655544445556666543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.7e-24 Score=262.40 Aligned_cols=412 Identities=11% Similarity=0.035 Sum_probs=295.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREA 96 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 96 (900)
....-.|++++|+..+.++....|....++..+|.++...|++++|+.++++++..+|.++.++..+|.++...|++++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34556899999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 045355 97 IKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLE 176 (900)
Q Consensus 97 i~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~ 176 (900)
+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...|..++|+..++. ...
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~---~~~ 178 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD---ANL 178 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh---CCC
Confidence 9999999999999999 999999999999999999999999999999999999999999999999988855543 221
Q ss_pred cCCCCCcchhchhHHHHHHHHHHH-----HcCCH---HH---HHHHHHHHhhhcCCH----HHHHHHHHHHHHHcCCHHH
Q 045355 177 DDYPPDNERCEHGEMLLYKISLLE-----ECGSF---ER---ALAEMHKKESKIVDK----LAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~---~~---Al~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~e 241 (900)
.|. ............+..+.. ..+++ ++ ..+.+.+....+|+. ..++......+...|++++
T Consensus 179 -~p~--~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 -TPA--EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred -CHH--HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 110 000000001111111111 11122 22 223333333334332 2222222223456677777
Q ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch-----hhhhchhhcccchHHH
Q 045355 242 AAELYRALLSMNPDNYS-YYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS-----AVKRIPLDFLQGEKFR 315 (900)
Q Consensus 242 A~~~~~~al~~~p~~~~-~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~l~l~~~~~~~~~ 315 (900)
|+..|+++++..|..+. ....++.++ +..|++++|+..|++++...|... ....+...+...+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~y--------l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAY--------LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHH--------HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 77777777776533221 222234444 446777777777777776665441 2233444455666666
Q ss_pred HHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q 045355 316 EAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQ 395 (900)
Q Consensus 316 ~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~ 395 (900)
++...+.+.... .|.....+. .....+.+....+++.+|.++...|+
T Consensus 328 eA~~~l~~~~~~--~P~~~~~~~-------------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 328 GALTVTAHTINN--SPPFLRLYG-------------------------------SPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHHHHHHhhc--CCceEeecC-------------------------------CCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 666654433311 110000000 00011111223367789999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhc
Q 045355 396 YDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFT 475 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~ 475 (900)
+++|+..+++++...|.++.+++.+|.++...|++++|+..+++++.++|++..+....+..+++.|++++|+..+....
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999998777
Q ss_pred c
Q 045355 476 K 476 (900)
Q Consensus 476 ~ 476 (900)
+
T Consensus 455 ~ 455 (765)
T PRK10049 455 A 455 (765)
T ss_pred H
Confidence 6
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-24 Score=222.83 Aligned_cols=375 Identities=14% Similarity=0.112 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
.++-.+|..+|.+|+|++|+++|+++|...|+.+..+.+++-||...|++++-++...++++++|+...+++..+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHH------------------H------------h--hCCCcHH-----H-------------------
Q 045355 90 DREYREAIKCYRNA------------------L------------R--IDPDNIE-----I------------------- 113 (900)
Q Consensus 90 ~g~~~eAi~~~~~a------------------l------------~--~~p~~~~-----~------------------- 113 (900)
.|++.+|+....-. | + ..|.-+. .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 99999987654311 1 1 0011000 0
Q ss_pred -HHHHHHH--HHHhc---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 114 -LRDLSLL--QAQMR---DLTGFVETRQQLLTLK----PNH---------RMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 114 -~~~la~~--~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
.-.+... ....+ .|..|.+.+.+..... ..+ ..++...|..++..|++-.|. ..+..+
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~---~d~~~~ 352 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ---EDFDAA 352 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh---hhHHHH
Confidence 0011111 11112 3555555554443211 112 467778899999999999999 677778
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
+..++. ....|+.++.+|....+.++-...|.++..++|.++.+|+.+|.+++-++++++|+.-|++++.++|
T Consensus 353 I~l~~~-------~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPA-------FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcc-------cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 887743 3346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhh-chhhcccchHHHHHHHHhHHhh-hhcCCCh
Q 045355 255 DNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKR-IPLDFLQGEKFREAAFNYVRPL-LTKGVPS 332 (900)
Q Consensus 255 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-l~l~~~~~~~~~~a~~~~~~~~-l~~~~p~ 332 (900)
++.-.+..++.++ +..+.++++...|+++..++|+++.... .+-.+...++|.++.+.|-..+ +.+...-
T Consensus 426 e~~~~~iQl~~a~--------Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCAL--------YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9999999998887 6678999999999999999999986654 4556667889999988887766 2221111
Q ss_pred hhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 045355 333 LFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT 412 (900)
Q Consensus 333 ~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~ 412 (900)
+..+.+.+ +.-.+.... -.+++..|+.++++|++++|.
T Consensus 498 ~~v~~~pl-----------------------------------------V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 498 IIVNAAPL-----------------------------------------VHKALLVLQ-WKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ccccchhh-----------------------------------------hhhhHhhhc-hhhhHHHHHHHHHHHHccCch
Confidence 11111110 011111111 249999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045355 413 VIDLYSVKSRILKHAGDLAAAATLADEARCMD 444 (900)
Q Consensus 413 ~~~~~~~la~i~~~~G~~~eA~~~~~~al~ld 444 (900)
+-.++..+|.+..++|+.++|++.|+++..+-
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=2.9e-23 Score=251.73 Aligned_cols=421 Identities=14% Similarity=0.058 Sum_probs=327.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 29 LKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 29 l~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
+..+++ -...|-++....-...+....|+.++|+..+.++...+|....++..+|.++...|++++|+..|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5567888888888889999999999999999999998899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
.++.++..++.++...|++++|+..+++++...|++.. +..+|.++...|++++|+ ..+.+++... |..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al---~~l~~al~~~-------P~~ 149 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL---RAMTQALPRA-------PQT 149 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH---HHHHHHHHhC-------CCC
Confidence 99999999999999999999999999999999999999 999999999999999999 5556666655 566
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCC
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDKLA-----YKEQEVSLLV-----KIGRL---EEAAELYRALLSMNPD 255 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~eA~~~~~~al~~~p~ 255 (900)
..++..++.++...|..++|+..++++.. .|+... ....+..+.. ..+++ ++|+..|+.+++..|.
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 78888999999999999999999998776 554311 1122222222 23345 7899999999976544
Q ss_pred CHHHHHH--------HHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchh--hhhchhhcccchHHHHHHHHhHHhh
Q 045355 256 NYSYYEG--------LQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSA--VKRIPLDFLQGEKFREAAFNYVRPL 325 (900)
Q Consensus 256 ~~~~~~~--------l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~l~l~~~~~~~~~~a~~~~~~~~ 325 (900)
++..... ++.+ +..+++++|+..|++++...|..+. ...++..++..+++++|...|.+
T Consensus 229 ~p~~~~~~~~a~~d~l~~L---------l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~-- 297 (765)
T PRK10049 229 NPDATADYQRARIDRLGAL---------LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE-- 297 (765)
T ss_pred CCccchHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH--
Confidence 4322111 2222 2357899999999998887643221 12233344444444444443322
Q ss_pred hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 045355 326 LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDE 405 (900)
Q Consensus 326 l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~ 405 (900)
. +...+..+ .........++..+...|++++|+..+++
T Consensus 298 -------------------------------~---l~~~p~~~--------~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 298 -------------------------------L---FYHPETIA--------DLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred -------------------------------H---hhcCCCCC--------CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2 22111110 00001345566678899999999999999
Q ss_pred HHHcCCC---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHH
Q 045355 406 AIEHTPT---------------VIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 406 al~~~P~---------------~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
+....|. ...++..+|.++...|++++|++.+++++...|.+..+....+..+...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9998873 2457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhh
Q 045355 471 AALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 471 ~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~ 524 (900)
+..... +++... +.+..|.++.+.|++++|.+.++++++.+++..
T Consensus 416 l~~al~l~Pd~~~---------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 416 LKKAEVLEPRNIN---------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHhhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 988777 443322 334788999999999999999999999887654
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=3.6e-21 Score=216.16 Aligned_cols=450 Identities=17% Similarity=0.133 Sum_probs=316.0
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY 83 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 83 (900)
.+++.-+.++.+|..++..|++++|..++..+++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++...|..+
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR-----MNWIGFAVSHHLN 158 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~ 158 (900)
+....++|++.+|+-||.+|++.+|.+.......+.+|.++|+...|++.|.+++...|... ......+..+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999322 2223446677777
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--cCCH--------------
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK--IVDK-------------- 222 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~--~p~~-------------- 222 (900)
++-+.|++.|+.+.. .... ....+.+..++.++.....++.|+......... .+++
T Consensus 294 ~~~e~a~~~le~~~s---~~~~-----~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 294 NERERAAKALEGALS---KEKD-----EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred hHHHHHHHHHHHHHh---hccc-----cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 887888866655443 1111 112245567788888889999998877665441 1111
Q ss_pred ------------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHH
Q 045355 223 ------------LAY-KEQEVSLLVKIGRLEEAAELYRALLSMNP-DNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALY 288 (900)
Q Consensus 223 ------------~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~ 288 (900)
..+ +..++.+.++.++..+++..+..--...| +.+..+..++.++ ...|.+..|+.+|
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al--------~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADAL--------TNIGKYKEALRLL 437 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHH--------HhcccHHHHHHHH
Confidence 111 33344444444444444433322222112 2234444555544 3444455555444
Q ss_pred HHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCC
Q 045355 289 KSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYP 368 (900)
Q Consensus 289 ~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~ 368 (900)
..+....+
T Consensus 438 ~~i~~~~~------------------------------------------------------------------------ 445 (895)
T KOG2076|consen 438 SPITNREG------------------------------------------------------------------------ 445 (895)
T ss_pred HHHhcCcc------------------------------------------------------------------------
Confidence 43321111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-
Q 045355 369 GREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLAD- 447 (900)
Q Consensus 369 ~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d- 447 (900)
......|+.+|.+|..+|.++.|+++|++++...|.+.++...++.++..+|+.++|.+.++....-|+.+
T Consensus 446 --------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 446 --------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred --------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 11122679999999999999999999999999999999999999999999999999999999977555322
Q ss_pred --------hhHHHHHHHHHHHcCChHHHHHHH----HHhcc---------------c-C--CcC----------------
Q 045355 448 --------RYVNSECVKRMLQADQVSLAEKTA----ALFTK---------------D-G--DQH---------------- 481 (900)
Q Consensus 448 --------~~l~~~~a~~~l~~g~~eeA~~~~----~~~~~---------------~-~--~~~---------------- 481 (900)
+.+.......+...|+.++=+.+. ..|.+ . + ...
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 234444455566777777644332 11100 0 0 000
Q ss_pred ------CCh------------hhhhHHHHH--HHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhh------hhHHHhh
Q 045355 482 ------NNL------------HDMQCMWYE--LASGESYFRQGDLGRALKKFLAVEKHYADITEDQF------DFHSYCL 535 (900)
Q Consensus 482 ------~~l------------~~~q~~w~~--~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~------df~~y~~ 535 (900)
..+ ...-.-||. .++..+..+.|++.+|+........++.-+.+.+. -...-|+
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 000 001123653 56667888999999999999888777655544442 1222234
Q ss_pred hhccHHHHHHHHHh
Q 045355 536 RKMTLRAYVEMLKF 549 (900)
Q Consensus 536 rk~~~~~y~~~l~~ 549 (900)
--+..+..++.+||
T Consensus 678 ~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 678 YARDPGDAFSYLRS 691 (895)
T ss_pred hcCCHHHHHHHHHH
Confidence 44455666666665
No 21
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=8.1e-21 Score=204.81 Aligned_cols=502 Identities=16% Similarity=0.137 Sum_probs=393.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH----------------
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL---------------- 85 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~---------------- 85 (900)
.++..+|..+++.+.+.+|.|+.+|..-+.+-...|++..|..++.+..+..|.+.+.|..-..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3678889999999999999999999888888888888888877777776666666555532221
Q ss_pred --------------HH---------------------------HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 86 --------------LY---------------------------RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 86 --------------~~---------------------------~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
+- ....+.+.|+..+.+|++.-|.+.+.|..+ .++
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAl----arL 419 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLAL----ARL 419 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHH----HHH
Confidence 11 011222334444444444444444444443 445
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCc---------------------
Q 045355 125 RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDN--------------------- 183 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~--------------------- 183 (900)
.-|+.|...+.++-+.-|.++..|+.-+..-...|+.+...+++..-...+..+....+
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 66889999999999999999999999999999999988877666554332221110000
Q ss_pred -----------chhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 184 -----------ERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 184 -----------~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
+..+.-..|+.-+..+...+.++-|...|..+++..|....+|...+..-...|..++-..++++++..
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 112344567777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcc-cchHHHHHHHHhHHhhhhcCCC
Q 045355 253 NPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFL-QGEKFREAAFNYVRPLLTKGVP 331 (900)
Q Consensus 253 ~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~-~~~~~~~a~~~~~~~~l~~~~p 331 (900)
.|.....|...+... ...|+...|..++.++.+..|++..++..+..+. ...+++.+-..+.++....|.+
T Consensus 580 ~pkae~lwlM~ake~--------w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEK--------WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred CCcchhHHHHHHHHH--------HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 999999999888887 5579999999999999999999988776555544 4677777777777777777777
Q ss_pred hhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 045355 332 SLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP 411 (900)
Q Consensus 332 ~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P 411 (900)
.++..-..+-...++.+.+.++++.. ++.-|.++. .|..+|+++.++++.+.|.+.|...++..|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~---lk~fp~f~K------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEA---LKSFPDFHK------------LWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHH---HHhCCchHH------------HHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 77776666666666666666665444 555455554 688999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHH
Q 045355 412 TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMW 491 (900)
Q Consensus 412 ~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w 491 (900)
.++.+|..++++-...|++..|...+++++-.||.+..++......-+|.|+.+.|..++....++....+-++. ..+|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa-EaI~ 795 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA-EAIW 795 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877775444443332 3344
Q ss_pred HH-----------------------HHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHH
Q 045355 492 YE-----------------------LASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLK 548 (900)
Q Consensus 492 ~~-----------------------~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~ 548 (900)
.. ...|..++...+++.|++.|++.++.-++..|-=..|..|-++.|+-..-.+++.
T Consensus 796 le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred hccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 42 7789999999999999999999999999998888888899999998777777766
Q ss_pred hhh
Q 045355 549 FQD 551 (900)
Q Consensus 549 ~~d 551 (900)
..+
T Consensus 876 ~c~ 878 (913)
T KOG0495|consen 876 KCE 878 (913)
T ss_pred HHh
Confidence 544
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-22 Score=212.45 Aligned_cols=378 Identities=14% Similarity=0.099 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..+-.+|.-+++.|+|++|+++|.++|.+.|+.+..|.+++-||...|+|++-++...++++++|+...+++..+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHH------------------HHHh--------------CCCCHHH-----HH-----------------
Q 045355 124 MRDLTGFVETRQQ------------------LLTL--------------KPNHRMN-----WI----------------- 149 (900)
Q Consensus 124 ~g~~~~A~~~~~~------------------al~~--------------~p~~~~~-----~~----------------- 149 (900)
+|++.+|+....- .|.. .|..|.+ ++
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 9999999764321 1110 0111111 00
Q ss_pred ---HHHHH--HHHc---CCHHHHHHHHHHHHhhhccCCCC---CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 045355 150 ---GFAVS--HHLN---SNGSKAVEILEAYEGTLEDDYPP---DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK 218 (900)
Q Consensus 150 ---~la~~--~~~~---g~~~~A~~~l~~~~~~l~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~ 218 (900)
.+... .+.. ..|..|...+..-.......... +.......+++...|..++-.|++-.|...|+.++.+
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 00000 0001 12333332111100000000000 0011123566677777777778888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcc
Q 045355 219 IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWS 298 (900)
Q Consensus 219 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 298 (900)
+|.....+..+|.+|....+.++-...|.++..++|+++..|+..|... +-.+++++|+.-|++++...|.+
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~--------flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR--------FLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH--------HHHHHHHHHHHHHHHHhhcChhh
Confidence 7777777777888888888888888888888888888887777777766 23456666666666665555543
Q ss_pred hhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchh
Q 045355 299 SAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPST 378 (900)
Q Consensus 299 ~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 378 (900)
.
T Consensus 428 ~------------------------------------------------------------------------------- 428 (606)
T KOG0547|consen 428 A------------------------------------------------------------------------------- 428 (606)
T ss_pred h-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------Ch--hH
Q 045355 379 LLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA------DR--YV 450 (900)
Q Consensus 379 ~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~------d~--~l 450 (900)
+++..++.+.++.++++++...|+.++...|+.++.|...|.|+..++++++|.+.|+.|+++.|. +. .+
T Consensus 429 --~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 --YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 156677788888999999999999999999999999999999999999999999999999999998 44 33
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 045355 451 NSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHY 520 (900)
Q Consensus 451 ~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~ 520 (900)
+-.+..+. -.+++..|++++.+... ++. |-.....+|.+-.++|+.++|+++|++....-
T Consensus 507 ~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk---------ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 507 HKALLVLQ-WKEDINQAENLLRKAIELDPK---------CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhHhhhc-hhhhHHHHHHHHHHHHccCch---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333 34899999999988877 443 22344589999999999999999998876554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=9.7e-21 Score=224.93 Aligned_cols=454 Identities=13% Similarity=0.105 Sum_probs=342.5
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|......+..++..+++|++..|+..|+++++.+|+++.+...+..++...|+.++|+.++++++...|........+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 34556789999999999999999999999999999997555588888889999999999999999434444445555588
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
++...|+|++|+..|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986654 55666666677776677
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHcC------
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL--AYKEQEVSLLVKIG------ 237 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~--~~~~~la~~~~~~g------ 237 (900)
..+++++... |...+++..+..++...|-...|++...+--....... .+....+.-..+.+
T Consensus 190 ---~~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 190 ---QASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred ---HHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6667777766 56668899999999999999999988776443322211 11111222222222
Q ss_pred ---C---HHHHHHHHHHHHHhCCCCH---HHHHH-HHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch--hhhhch
Q 045355 238 ---R---LEEAAELYRALLSMNPDNY---SYYEG-LQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS--AVKRIP 305 (900)
Q Consensus 238 ---~---~~eA~~~~~~al~~~p~~~---~~~~~-l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~l~ 305 (900)
+ .+.|+.-++.++..-|..+ ..+.. ...-+... ...+++.+++..|+.+......-+ .....+
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL-----~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL-----LVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 2 3567777888887444333 22211 11111111 347889999999999886553222 335567
Q ss_pred hhcccchHHHHHHHHhHHhhhhcC-----CChh--hhchhhhhcCCChHHHHHHHHHHHHHhhcc-cCCCCCCCCCCCch
Q 045355 306 LDFLQGEKFREAAFNYVRPLLTKG-----VPSL--FSDLSPLYDQPGKADILEQLILELEHSIGT-TGKYPGREEKEPPS 377 (900)
Q Consensus 306 l~~~~~~~~~~a~~~~~~~~l~~~-----~p~~--~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~ 377 (900)
-.|+..++..+|...|...+...+ .+.. ...|-..|.+.++.+.+..+++...+...- ...+.. ....+.+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-~~~~pn~ 413 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-PGKEPND 413 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC-CCCCCCc
Confidence 778888888899888887764442 1122 245566677899988888888888653220 000111 1223333
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHH
Q 045355 378 TLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKR 457 (900)
Q Consensus 378 ~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~ 457 (900)
...-+...++.++...|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|.+..+....+..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 44457888999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHcCChHHHHHHHHHhcc
Q 045355 458 MLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 458 ~l~~g~~eeA~~~~~~~~~ 476 (900)
.+..+++.+|..++.....
T Consensus 494 al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 494 AMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHhhhhHHHHHHHHHHHHh
Confidence 9999999999888755544
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=9.6e-21 Score=213.95 Aligned_cols=209 Identities=16% Similarity=0.038 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc----HHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN----IEILRDLS 118 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~la 118 (900)
....+.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34556678888888888888888888888888888888888888888888888888888888753322 24677888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHH
Q 045355 119 LLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISL 198 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 198 (900)
.++...|++++|+..|.++++..|.+..++..++.++...|++++|++.+.. .+...+.+.. ......+..+|.+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~~~~--~~~~~~~~~la~~ 189 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAER---LEKLGGDSLR--VEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHH---HHHhcCCcch--HHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888855444 3333322111 1223455667788
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045355 199 LEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN 256 (900)
Q Consensus 199 ~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 256 (900)
+...|++++|+..++++++..|+...++..+|.++...|++++|+..|++++..+|++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 8888888888888888888888878888888888888888888888888888776654
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.1e-20 Score=213.39 Aligned_cols=279 Identities=14% Similarity=0.056 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc----HHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS----HVCWHVY 83 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~l 83 (900)
.-...|..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344567788889999999999999999999999999999999999999999999999999998854322 3568899
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHc
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM-----NWIGFAVSHHLN 158 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~ 158 (900)
|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.+++++...|.+.. .+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998886532 466789999999
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHcC
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK-LAYKEQEVSLLVKIG 237 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~-~~~~~~la~~~~~~g 237 (900)
|++++|+..+. +++... |....+++.+|.++...|++++|+..+++++...|.. ..++..++.+|...|
T Consensus 194 ~~~~~A~~~~~---~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 194 GDLDAARALLK---KALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred CCHHHHHHHHH---HHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 99999995544 445443 3445788999999999999999999999999988876 466788999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhch
Q 045355 238 RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIP 305 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~ 305 (900)
++++|+..++++++..|+...+ ..++.++ ...|++++|...++++++.+|+...+..+.
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~~-~~la~~~--------~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADLL-LALAQLL--------EEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchHH-HHHHHHH--------HHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999987554 7777777 568999999999999999999887665433
No 26
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=1.2e-18 Score=215.87 Aligned_cols=582 Identities=12% Similarity=0.091 Sum_probs=312.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------------
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKK-FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI----------------- 74 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p----------------- 74 (900)
-.....+...|++++|+..|+.+... .|.+..++..+...+...+..+.|..++..+++..+
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 33445555667777777777766553 133333443333333344444444444443333222
Q ss_pred ---------------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCC----------------------------
Q 045355 75 ---------------KSHVCWHVYGLLYRSDREYREAIKCYRNALRI--DPD---------------------------- 109 (900)
Q Consensus 75 ---------------~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~--~p~---------------------------- 109 (900)
.+...|..+...|.+.|++++|+..|.+.... .|+
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 23345666666666666666666666665432 232
Q ss_pred ------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCc
Q 045355 110 ------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDN 183 (900)
Q Consensus 110 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~ 183 (900)
+..++..+...|.+.|+++.|...|+++.. .+...|..+...|.+.|++++|+.++..+.. ....++
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~---~g~~Pd- 287 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRE---LSVDPD- 287 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCC-
Confidence 122234445555555666666665555432 2334555566666666666666644443322 121111
Q ss_pred chhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 184 ERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI-VDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEG 262 (900)
Q Consensus 184 ~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 262 (900)
...+..+...+...|+.+.|.+.+..+.+.. +.+..++..+...|.+.|++++|..+|+++.. .+...|..
T Consensus 288 -----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~ 359 (857)
T PLN03077 288 -----LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTA 359 (857)
T ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHH
Confidence 1344444455555566666666555554431 22455566666667777777777777666542 23344555
Q ss_pred HHHHhcccccCCCCCCCcHHHHHHHHHHHHHh--cCcchhhhhchhhcccchHHHHHHHHhHHhhhhcC---CChhhhch
Q 045355 263 LQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ--YTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKG---VPSLFSDL 337 (900)
Q Consensus 263 l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~---~p~~~~~L 337 (900)
+...+ ...|++++|..+|+++... .|+...+..+...+...+.++.+...+.... ..| ...+++.|
T Consensus 360 li~~~--------~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~L 430 (857)
T PLN03077 360 MISGY--------EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANAL 430 (857)
T ss_pred HHHHH--------HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHH
Confidence 55555 4466677777777766543 3454444444445555566666555444333 222 23445556
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHH
Q 045355 338 SPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLY 417 (900)
Q Consensus 338 ~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~ 417 (900)
...|...++.+.+.++++...+ ++.. +|..+...|.+.|++++|+..|++.+...+.+...+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~----------------~d~v--s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~ 492 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE----------------KDVI--SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTL 492 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC----------------CCee--eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHH
Confidence 6666666666655555544310 1111 345566666677777777777777665444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcC-ChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHH
Q 045355 418 SVKSRILKHAGDLAAAATLADEARCMDLA-DRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELAS 496 (900)
Q Consensus 418 ~~la~i~~~~G~~~eA~~~~~~al~ldp~-d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~l 496 (900)
..+-..+.+.|+.+.+.+.+..+++.... |..+.+.+...+.+.|++++|.+.+... ..+. ..| ..+
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~--------~s~--n~l 560 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDV--------VSW--NIL 560 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCCh--------hhH--HHH
Confidence 45455555566666666666655554322 2244445566777888888887776554 1111 122 266
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhH---HHhhhhccHHHHHHHHHhhh-hhcCCHHHHHHHHHHHHHHHH
Q 045355 497 GESYFRQGDLGRALKKFLAVEKHYADITEDQFDFH---SYCLRKMTLRAYVEMLKFQD-RLHSHAYFHKAAAGAIRCYIK 572 (900)
Q Consensus 497 g~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~---~y~~rk~~~~~y~~~l~~~d-~l~~~~~~~~a~~~~~~~y~~ 572 (900)
...|.+.|+.++|++.|+++.+. .+..|...|- .-|.+.+.+..-..+++.-. ...-.|.. .....++..|.+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l~r 637 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYACVVDLLGR 637 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHh
Confidence 77788888888888888887653 2333333332 23334444433333322211 11123322 233455555532
Q ss_pred HhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCchh-hhc---c
Q 045355 573 LFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHGE-KLL---Q 648 (900)
Q Consensus 573 l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~d~d~~~~-~l~---~ 648 (900)
..+- .++.+--+ +- +..||+.-- .|+ .
T Consensus 638 ~G~~--------------------~eA~~~~~---------------------------~m--~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 638 AGKL--------------------TEAYNFIN---------------------------KM--PITPDPAVWGALLNACR 668 (857)
T ss_pred CCCH--------------------HHHHHHHH---------------------------HC--CCCCCHHHHHHHHHHHH
Confidence 2211 00000000 00 123443211 122 2
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhh
Q 045355 649 VEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRL 700 (900)
Q Consensus 649 ~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~ 700 (900)
..+.++.|.+..+.+.+..|++...|.+...+|.+.|+|..|.+..+.....
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 4567788888899999999999999999999999999999999999887654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=5.6e-19 Score=210.01 Aligned_cols=460 Identities=12% Similarity=-0.005 Sum_probs=343.2
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 37 KKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 37 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
-..|+++...+..+.+.++.|+++.|+..|+++++.+|.++...+.+..++...|++++|+..+++++.-.|.....+..
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 36899999999999999999999999999999999999996554588888899999999999999999444455555666
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHH
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKI 196 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la 196 (900)
+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|+. .+.++...++ .. ..+..++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~---~l~~l~~~dp-------~~-~~~l~la 176 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK---QATELAERDP-------TV-QNYMTLS 176 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH---HHHHhcccCc-------ch-HHHHHHH
Confidence 68899999999999999999999999999999999999999999999995 4444555443 22 2235556
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHhcccccC
Q 045355 197 SLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGL---QKCLGLYRDN 273 (900)
Q Consensus 197 ~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l---~~~~~l~~~~ 273 (900)
.++...++..+|+..++++++..|++..++..+..++...|-...|.+...+--.........+... +.........
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 6666678887799999999999999999999999999999999998866654332221111111111 1111100000
Q ss_pred CCCCCC---cHHHHHHHHHHHHHhcCcch---h-hhhc----hhhcccchHHHHHHHHhHHhhhhc-CCC-hhhhchhhh
Q 045355 274 GNYSSG---EIDELDALYKSLAQQYTWSS---A-VKRI----PLDFLQGEKFREAAFNYVRPLLTK-GVP-SLFSDLSPL 340 (900)
Q Consensus 274 ~~~~~~---~~~~A~~~~~~~~~~~p~~~---~-~~~l----~l~~~~~~~~~~a~~~~~~~~l~~-~~p-~~~~~L~~l 340 (900)
.....+ -.+.++..++.++...|..+ . ..+. ...+...+++.+++..|....... .+| -+...++..
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 000111 34667777888777444322 2 2222 223335788899999887665333 345 345567788
Q ss_pred hcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---------
Q 045355 341 YDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP--------- 411 (900)
Q Consensus 341 y~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P--------- 411 (900)
|.....++.+..++......-. +.+. .+.... ....|-..|...+++++|..++++..+..|
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~--~~~~------~~~~~~-~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDG--KTFR------NSDDLL-DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccc--cccC------CCcchH-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 8888888888887776633211 0000 111111 134566778899999999999999998655
Q ss_pred ------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCCh
Q 045355 412 ------TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNL 484 (900)
Q Consensus 412 ------~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l 484 (900)
+..++...++.++...|++.+|.+.+++.+...|.|..+....+.++...|.+.+|++++..... ++..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~---- 483 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS---- 483 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc----
Confidence 34568888999999999999999999999999999999999999999999999999999965544 3322
Q ss_pred hhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhh
Q 045355 485 HDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITE 525 (900)
Q Consensus 485 ~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~ 525 (900)
.+.....|.++..+|++.+|.+....+...+++...
T Consensus 484 -----~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 484 -----LILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred -----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 234568899999999999999999999999887653
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4e-21 Score=210.13 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 045355 57 DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQ 136 (900)
Q Consensus 57 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (900)
-+..+|+..|.+.-...++...+...+|..|+.+++|++|..+|+.+-++.|-.....-....++.++.+--+---..+.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 34566777776644455566666666777777777777777777777666666555555555555555554444445556
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045355 137 LLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKE 216 (900)
Q Consensus 137 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al 216 (900)
++..+|+.|+.|..+|.++..+++++.|+ ..|.+++..+ |....++..+|.=+.....++.|..+|+.++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Ai---k~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAI---KCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHH---HHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 66667777777777777777777777776 5566666655 3445566666666677777777777777777
Q ss_pred hhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcC
Q 045355 217 SKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYT 296 (900)
Q Consensus 217 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p 296 (900)
..+|.+..+|+.+|.+|.++++++.|.-.|++++++||.+......++..+ ...|+.++|+.+|+++....|
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~--------~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ--------HQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH--------HHhhhhhHHHHHHHHHHhcCC
Confidence 777777777777777777777777777777777777777776666666665 445666666666666655544
Q ss_pred cchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCc
Q 045355 297 WSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPP 376 (900)
Q Consensus 297 ~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 376 (900)
.++.
T Consensus 555 kn~l---------------------------------------------------------------------------- 558 (638)
T KOG1126|consen 555 KNPL---------------------------------------------------------------------------- 558 (638)
T ss_pred CCch----------------------------------------------------------------------------
Confidence 4331
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh
Q 045355 377 STLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY 449 (900)
Q Consensus 377 ~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~ 449 (900)
..|..|.++...+++++|+..+++.-+..|+...+++.+|++|..+|+.+.|+..|--|..+||.-..
T Consensus 559 -----~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 -----CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -----hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 34567777778889999999999998999999999999999999999999999999999999887544
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.2e-20 Score=190.36 Aligned_cols=297 Identities=14% Similarity=0.065 Sum_probs=239.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRI-DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS 159 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (900)
..++.++......++++.-+++.... .|.+..+-...|.++....|+++|+..|+.+.+.+|-..+..-.+..+++-..
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 34556666667788888888888877 68888888889999999999999999999999999977766666666666554
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCH
Q 045355 160 NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRL 239 (900)
Q Consensus 160 ~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 239 (900)
+-.+-. .|.. .+...+ .-.++....+|+.|.-.++.++|+.+|+++++++|....+|..+|.=|..+.+.
T Consensus 311 ~~skLs-~LA~--~v~~id-------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 311 DKSKLS-YLAQ--NVSNID-------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred hhHHHH-HHHH--HHHHhc-------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 432221 2211 222222 223467777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHH
Q 045355 240 EEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAF 319 (900)
Q Consensus 240 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~ 319 (900)
..|+..|+++++++|.+..+|++||+.|.+ .+.+.=|+-+|+++...-|++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYei--------m~Mh~YaLyYfqkA~~~kPnDs-------------------- 432 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEI--------MKMHFYALYYFQKALELKPNDS-------------------- 432 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHH--------hcchHHHHHHHHHHHhcCCCch--------------------
Confidence 999999999999999999999999999843 3344445555555544433322
Q ss_pred HhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHH
Q 045355 320 NYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVA 399 (900)
Q Consensus 320 ~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~A 399 (900)
. .|..||.+|.+.++.++|
T Consensus 433 -----------------------------------------------------------R--lw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 433 -----------------------------------------------------------R--LWVALGECYEKLNRLEEA 451 (559)
T ss_pred -----------------------------------------------------------H--HHHHHHHHHHHhccHHHH
Confidence 2 467999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCcCChhHHHHHHHHHHHcCChHHHHHHHH
Q 045355 400 LSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARC-------MDLADRYVNSECVKRMLQADQVSLAEKTAA 472 (900)
Q Consensus 400 l~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~-------ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~ 472 (900)
+.+|.+++....+...++..+|.+|..+++..+|..+|++.++ .+|.-..+...++.+..+.+++++|...+.
T Consensus 452 iKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 452 IKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 455556677778999999999999987766
Q ss_pred Hhcc
Q 045355 473 LFTK 476 (900)
Q Consensus 473 ~~~~ 476 (900)
....
T Consensus 532 ~~~~ 535 (559)
T KOG1155|consen 532 LVLK 535 (559)
T ss_pred HHhc
Confidence 5544
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.2e-22 Score=215.07 Aligned_cols=270 Identities=17% Similarity=0.160 Sum_probs=242.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------------
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGV---------------------- 70 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------------- 70 (900)
+..+.....+-+..+|+..|++.-...++.+.++..+|..|+.+++|++|..+|+.+-
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 3444444455667788888888666777777777888888888888888888877663
Q ss_pred ------------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 045355 71 ------------KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLL 138 (900)
Q Consensus 71 ------------~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 138 (900)
..+|.+++.|..+|.||.-+++++.|+++|++|+.++|....+|..+|.-+.....++.|..+|+.++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 44788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 045355 139 TLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK 218 (900)
Q Consensus 139 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~ 218 (900)
..+|.+..+|+++|.+|.++++++.|. -.|.+++..+ |.++.+...+|.++.+.|+.++|+..+++|+.+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae---~~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAE---FHFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHH---HHHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999 7788899887 566788999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcc
Q 045355 219 IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWS 298 (900)
Q Consensus 219 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 298 (900)
+|.++-..+..|.++..++++++|+..++++-+.-|++...+..+|.++ -..|+.+.|+..|.-+....|..
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~--------k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY--------KRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH--------HHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998 45688899999999999998876
Q ss_pred hh
Q 045355 299 SA 300 (900)
Q Consensus 299 ~~ 300 (900)
..
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 53
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=5.4e-19 Score=198.84 Aligned_cols=407 Identities=15% Similarity=0.087 Sum_probs=295.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..+...|..++..|++++|..++.++++.+|.++.+|+.+|.+|..+|+.+++..++-.|--++|.+...|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45566677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhH-HHHHHHHHHHHc
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGE-MLLYKISLLEEC 202 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~la~~~~~~ 202 (900)
+|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|. +.|.+.+...|+.+. +... .....+..+...
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am---~~f~~l~~~~p~~d~---er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM---ETFLQLLQLDPPVDI---ERIEDLIRRVAHYFITH 293 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH---HHHHHHHhhCCchhH---HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 777778877764333 3333 334458888888
Q ss_pred CCHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhcccccCCCCCC
Q 045355 203 GSFERALAEMHKKESKIV--DKLAYKEQEVSLLVKIGRLEEAAELYRALLSM--NPDNYSYYEGLQKCLGLYRDNGNYSS 278 (900)
Q Consensus 203 g~~~~Al~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~l~~~~~~~~~ 278 (900)
++-+.|++.++.++.... ....-+..++.++++..+++.|.........+ .+++...-..--.-
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~------------ 361 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR------------ 361 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc------------
Confidence 888999999999988432 23445667899999999999998887766552 22222210000000
Q ss_pred CcHHHHHHHHHHHHHhcCcchh-hhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHH
Q 045355 279 GEIDELDALYKSLAQQYTWSSA-VKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILEL 357 (900)
Q Consensus 279 ~~~~~A~~~~~~~~~~~p~~~~-~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~ 357 (900)
..-..++.--.+..++-+. ...+.+..+...+..+++..+
T Consensus 362 ---~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~------------------------------------ 402 (895)
T KOG2076|consen 362 ---EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF------------------------------------ 402 (895)
T ss_pred ---ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH------------------------------------
Confidence 0000000000000000011 011111112222222221111
Q ss_pred HHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHH
Q 045355 358 EHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP-TVIDLYSVKSRILKHAGDLAAAATL 436 (900)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P-~~~~~~~~la~i~~~~G~~~eA~~~ 436 (900)
+.. ....+....-.++.++..|...|++.+|+.++..++...+ .+..+|+.+|++|..+|.+++|+++
T Consensus 403 ---l~~--------~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 403 ---LVE--------DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ---HHH--------hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 100 0011222222688999999999999999999999998877 5578999999999999999999999
Q ss_pred HHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 045355 437 ADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLA 515 (900)
Q Consensus 437 ~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~ 515 (900)
|++++.++|.+..+...++.++.+.|+.++|.+++..... ++.....---++.+-...+...+|+..|+.++=+..-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999976543 322221111112222346788999999998885544444
Q ss_pred HHH
Q 045355 516 VEK 518 (900)
Q Consensus 516 v~~ 518 (900)
++.
T Consensus 552 Lv~ 554 (895)
T KOG2076|consen 552 LVD 554 (895)
T ss_pred HHH
Confidence 433
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-19 Score=192.79 Aligned_cols=410 Identities=14% Similarity=0.091 Sum_probs=281.7
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 18 KSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 18 ~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
.+..+.+|+-|+-+.+++.... .+|.-.+++|.+++..|++..|..++..- .++..+..|.+..+.++...+++++|.
T Consensus 25 ~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al 102 (611)
T KOG1173|consen 25 DALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQAL 102 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666554 55555666666666666666665555433 334445555556666666666666665
Q ss_pred HHHHHH------HhhCCCc-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-----
Q 045355 98 KCYRNA------LRIDPDN-------------------IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMN----- 147 (900)
Q Consensus 98 ~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----- 147 (900)
..+.+. +..+|.+ ..+.+..|.+|....+.++|...|.+++..++...++
T Consensus 103 ~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lv 182 (611)
T KOG1173|consen 103 LVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLV 182 (611)
T ss_pred HHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 555411 0111111 1123344555555555566666655555555444333
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHcCCHHH
Q 045355 148 ----------------------------------------------------------------WIGFAVSHHLNSNGSK 163 (900)
Q Consensus 148 ----------------------------------------------------------------~~~la~~~~~~g~~~~ 163 (900)
....+..++..+++.+
T Consensus 183 s~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~ 262 (611)
T KOG1173|consen 183 SAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKE 262 (611)
T ss_pred HHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHH
Confidence 3333444444444444
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 243 (900)
..++. ...++.+| -+..++.....++.+.|+..+-...-.+..+..|+.+..|+..|..|...|++.+|.
T Consensus 263 c~kit---~~lle~dp-------fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 263 CLKIT---EELLEKDP-------FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHHh---HHHHhhCC-------CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 44222 22233332 122222222225555555555555555555666777788999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhH
Q 045355 244 ELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYV 322 (900)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~ 322 (900)
.+|.++..++|....+|...|..+ ...++.++|+..|..+.+..|.+..+ ..+++.|...+.++-|-..|.
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsf--------a~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSF--------AGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHh--------hhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999998 55788999999999999999988755 678888888899999988888
Q ss_pred Hhh-hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 045355 323 RPL-LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALS 401 (900)
Q Consensus 323 ~~~-l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~ 401 (900)
++. +.+.+|-....++.+....+....+...+......++.. . .+.+ ....++.+||.+|.+.+.+++|+.
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~---~----~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV---L----NEKI-FWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc---c----cccc-chhHHHHhHHHHHHHHhhHHHHHH
Confidence 888 677799999999988887777776766666665333321 1 1111 112268899999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHH
Q 045355 402 KIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECV 455 (900)
Q Consensus 402 ~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a 455 (900)
+++++|...|.++..+..+|.||..+|+++.|++.|.+++-++|.|..+...+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987655544
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.3e-20 Score=189.74 Aligned_cols=449 Identities=15% Similarity=0.142 Sum_probs=342.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----HHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILK--KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS-----HVCWHV 82 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~ 82 (900)
..+|..+..|-.+.-+.+|+..|+-+++ .+|+.+..-..+|.++++..++.+|+++|+-++..-|.- ...+.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4578888888888889999999998886 689988888999999999999999999999999877753 345778
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------C-CCH-HHHHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK----------P-NHR-MNWIG 150 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------p-~~~-~~~~~ 150 (900)
+|..+.+.|.|+.|+..|..+++..|+... -++|..+++..|+-++..+.|.+++.+- | +++ ..+.+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 899999999999999999999999997654 4567788999999999999999998752 1 111 12222
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHhhhccCCCCCc---------------chhchhHHHHHHHHHHHHcCCHHHHHH
Q 045355 151 FAVSHHLN-----SNGSKAVEILEAYEGTLEDDYPPDN---------------ERCEHGEMLLYKISLLEECGSFERALA 210 (900)
Q Consensus 151 la~~~~~~-----g~~~~A~~~l~~~~~~l~~~~~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~Al~ 210 (900)
-+.---.+ .+-..|.+.+-...+.+..-..++. ..+-..++-+..+.-+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22211111 2233344333333333321111110 001123444567788899999999999
Q ss_pred HHHHHhhhcCCH-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHH
Q 045355 211 EMHKKESKIVDK-LAYKEQEVSLLVKI--GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDAL 287 (900)
Q Consensus 211 ~l~~al~~~p~~-~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~ 287 (900)
++.-.-+.+... ..+-.++..+++.+ .++.+|..+-..++..+.-++.+..+-+.+. +..|++++|.+.
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~--------f~ngd~dka~~~ 512 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA--------FANGDLDKAAEF 512 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee--------eecCcHHHHHHH
Confidence 988766554432 33344555555543 4788999999999999988888888877766 678999999999
Q ss_pred HHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCC
Q 045355 288 YKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGK 366 (900)
Q Consensus 288 ~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~ 366 (900)
|++++.....+. +...+++.+-..++.+++++.|++.. .+ + ...
T Consensus 513 ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh-------------~i-------------l---~nn------ 557 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH-------------AI-------------L---LNN------ 557 (840)
T ss_pred HHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-------------HH-------------H---Hhh------
Confidence 999988776655 55788888888888898888876543 00 0 000
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 367 YPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 367 ~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
+.+++.+|.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+...|.+++-.....-|-
T Consensus 558 -------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 558 -------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred -------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 1167899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhh
Q 045355 447 DRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 447 d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~ 524 (900)
+...-.+++.||+...-.++|+..+....- .+. |.-| ....+.++.|.|+|..|+..|+.+.+.|++..
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~--------~~kw-qlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN--------QSKW-QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc--------HHHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 998888889999988888999887765432 221 3334 34789999999999999999999999887643
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.7e-20 Score=195.41 Aligned_cols=421 Identities=14% Similarity=0.101 Sum_probs=300.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.+-..+...+..|+|+.|+.+|..++.++|.+...+.+..-+|..+|+|++|++-..+.++++|..+..|..+|..+.-.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC---------------------HHHHHHHHHHHHHhCCCCHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD---------------------LTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
|+|++|+..|.+.|+.+|+|...+..++.++..... +-.....|...+...|.++....
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999999999988732211 11112233333333333322211
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHhhhc-----cCC--CCCcc------hh------chhHHHHHHHHHHHHcCC
Q 045355 150 GFAVSHHLNSNGSKAVEILEA------YEGTLE-----DDY--PPDNE------RC------EHGEMLLYKISLLEECGS 204 (900)
Q Consensus 150 ~la~~~~~~g~~~~A~~~l~~------~~~~l~-----~~~--~~~~~------~~------~~~~~~~~la~~~~~~g~ 204 (900)
.... -.+...|.-++.. +..... ..| +.... .. ....-.-.+|.......+
T Consensus 164 ~~l~----d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 164 LYLN----DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred cccc----cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1000 0001111111100 000000 000 00000 00 122345578888899999
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHH
Q 045355 205 FERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDEL 284 (900)
Q Consensus 205 ~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A 284 (900)
+..|+++|..++.++ .+...+.+.+-+|+..|.+.+.+.....+++..-+...-+..++.++...+ +.+...++++.+
T Consensus 240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g-~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG-NAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh-hhhhhHHhHHHH
Confidence 999999999999999 889999999999999999999999999999988777766666766664421 122456889999
Q ss_pred HHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhh-hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcc
Q 045355 285 DALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPL-LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGT 363 (900)
Q Consensus 285 ~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~-l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~ 363 (900)
+.+|.+++..+-..... -.....+++........ ...........-+.-+...++ +..++..|.+++..
T Consensus 318 i~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd---y~~Av~~YteAIkr 387 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD---YPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhc
Confidence 99999987765442211 12223333333332222 111111111111222223333 67788888888877
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 364 TGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
.|..+. +|.++|.+|..+|.+..|+...+.+|+++|+.+.+|+..|.++..+.+|++|.+.|++++++
T Consensus 388 ~P~Da~------------lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 388 DPEDAR------------LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred CCchhH------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 655444 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhHHHHHHHHHH
Q 045355 444 DLADRYVNSECVKRML 459 (900)
Q Consensus 444 dp~d~~l~~~~a~~~l 459 (900)
||++..+.....+.+.
T Consensus 456 dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVE 471 (539)
T ss_pred CchhHHHHHHHHHHHH
Confidence 9999866655555544
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=2e-19 Score=180.61 Aligned_cols=345 Identities=11% Similarity=0.071 Sum_probs=235.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
+|.+.+-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45566777888999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHH
Q 045355 119 LLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISL 198 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 198 (900)
.+++.+|.++.|...|+.++..+|.+.... +|..-+... .....+......
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~--------------eaqskl~~~---------------~e~~~l~~ql~s 164 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVL--------------EAQSKLALI---------------QEHWVLVQQLKS 164 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhH--------------HHHHHHHhH---------------HHHHHHHHHHHH
Confidence 999999999999999999998888653221 111000000 000112222333
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCC
Q 045355 199 LEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSS 278 (900)
Q Consensus 199 ~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~ 278 (900)
+...|++..|++.+..++++.|-+...+..++.+|...|....|+.-++.+-++..++.+.++.+..++ +..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~--------Y~v 236 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL--------YTV 236 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH--------Hhh
Confidence 344566666666666666666666666666666666666666666666666666666666666666665 455
Q ss_pred CcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHH
Q 045355 279 GEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELE 358 (900)
Q Consensus 279 ~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~ 358 (900)
|+.+.++...++.++.+|+....+...- ......+.++...+.+ ....+.+.++...
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YK---klkKv~K~les~e~~i--------------------e~~~~t~cle~ge 293 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYK---KLKKVVKSLESAEQAI--------------------EEKHWTECLEAGE 293 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHH---HHHHHHHHHHHHHHHH--------------------hhhhHHHHHHHHH
Confidence 6666666666666666665442211000 0000011111000000 1112455566666
Q ss_pred HhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 359 HSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLAD 438 (900)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~ 438 (900)
..++..|..+. ......-.+..|+...|++.+|+..+.++++.+|++++++...|..|.-...|+.|+..|+
T Consensus 294 ~vlk~ep~~~~--------ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 294 KVLKNEPEETM--------IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHhcCCcccc--------eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66665444221 1111334567888899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCChhHH
Q 045355 439 EARCMDLADRYVN 451 (900)
Q Consensus 439 ~al~ldp~d~~l~ 451 (900)
+|.+++++|..+.
T Consensus 366 ~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 366 KALELNESNTRAR 378 (504)
T ss_pred HHHhcCcccHHHH
Confidence 9999999987543
No 36
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=2.1e-17 Score=204.85 Aligned_cols=586 Identities=13% Similarity=0.075 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKND-IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD-NIEILRDL 117 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~l 117 (900)
+.....+..+...+...|++++|...|....... +.+...+..+...+...+.+..|...+..+++..+. +......+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 4455667778889999999999999999988742 334455666666677778888888888887776653 33455666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-hccCCCC---------------
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT-LEDDYPP--------------- 181 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-l~~~~~~--------------- 181 (900)
...|.+.|+.+.|...|+++. +.+...|..+...+.+.|++++|+.++..+... +..+...
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 667777777777777777663 234566777777777777777777666554321 0000000
Q ss_pred ----------CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 182 ----------DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 182 ----------~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
.........++..+...|.+.|+++.|...|+++... +...|..+...|.+.|++++|+.+|.++..
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0000112245666777777778888888777775432 345567777777777888888877777766
Q ss_pred h--CCCCHHHHHHHHHHhccccc--------------------------CCCCCCCcHHHHHHHHHHHHHhcCcchhhhh
Q 045355 252 M--NPDNYSYYEGLQKCLGLYRD--------------------------NGNYSSGEIDELDALYKSLAQQYTWSSAVKR 303 (900)
Q Consensus 252 ~--~p~~~~~~~~l~~~~~l~~~--------------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 303 (900)
. .|+...+...+..+...... ..+...|++++|..+|+++.. |+...+..
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~ 359 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTA 359 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHH
Confidence 4 35444333333222100000 000234444444444444321 22223333
Q ss_pred chhhcccchHHHHHHHHhHHhhhhc--CCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHH
Q 045355 304 IPLDFLQGEKFREAAFNYVRPLLTK--GVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLW 381 (900)
Q Consensus 304 l~l~~~~~~~~~~a~~~~~~~~l~~--~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 381 (900)
+...|...++++++...|.+..... ....++..+...+...++.+.+.++.....+.- ..++. .
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g------------~~~~~--~ 425 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG------------LISYV--V 425 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC------------CCcch--H
Confidence 3444444444444444444332211 122233333334444444444443333332110 00111 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHc
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQA 461 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~ 461 (900)
++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.+.--+.|..........+.+.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 344555556666666666666654322 23345555555566666666666666665543222222222223334455
Q ss_pred CChHHHHHHHHHhcccCCc-CCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccH
Q 045355 462 DQVSLAEKTAALFTKDGDQ-HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTL 540 (900)
Q Consensus 462 g~~eeA~~~~~~~~~~~~~-~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~ 540 (900)
|.++.+.++.....+.+.. ...+ ...+-..|.+.|++++|.+.|..+ . .|..+|.. .+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~--------~naLi~~y~k~G~~~~A~~~f~~~-------~---~d~~s~n~---lI 561 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFL--------PNALLDLYVRCGRMNYAWNQFNSH-------E---KDVVSWNI---LL 561 (857)
T ss_pred chHHHhHHHHHHHHHhCCCcccee--------chHHHHHHHHcCCHHHHHHHHHhc-------C---CChhhHHH---HH
Confidence 5666666555555443221 1111 235678899999999999888665 1 11122210 01
Q ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcC---CCCCCCcCCC---CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 045355 541 RAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDS---PPRSTTEEDD---DKADLPPSQKKKLKQKQRKAEARAKKEA 614 (900)
Q Consensus 541 ~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l~d~---~~~~~~~~~~---~~~~~~~~~~kk~~~k~~~~~~~~~~~~ 614 (900)
..|. .+... ..|++++-++.+. |...+-.... ...++- .+-.+.-..+++
T Consensus 562 ~~~~----------~~G~~----~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v-~ea~~~f~~M~~--------- 617 (857)
T PLN03077 562 TGYV----------AHGKG----SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV-TQGLEYFHSMEE--------- 617 (857)
T ss_pred HHHH----------HcCCH----HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH-HHHHHHHHHHHH---------
Confidence 1111 11111 2233444333332 1110000000 000000 000111111110
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCCCCc--hh--hhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHH
Q 045355 615 EGKNEESSASGVSKSGKRHVKPVDPDPH--GE--KLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLA 690 (900)
Q Consensus 615 ~~~~~~~~~~~~~k~~~~~~~~~d~d~~--~~--~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~a 690 (900)
. + ...|+.. .- .++...+.+++|.++++.+- ..|+ ..+|-..-..+...++..++
T Consensus 618 --------~---------~--gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd-~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 618 --------K---------Y--SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPD-PAVWGALLNACRIHRHVELG 676 (857)
T ss_pred --------H---------h--CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCChHHH
Confidence 0 0 1233321 11 23336788999999999873 3454 45666666667777889999
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH
Q 045355 691 LQAVKHLLRLNAEDPESHRCLIRFFH 716 (900)
Q Consensus 691 l~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (900)
..+.+++++++|+++..+..+..++.
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 99999999999999998888765543
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=3.5e-17 Score=199.97 Aligned_cols=401 Identities=12% Similarity=0.081 Sum_probs=258.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFP--EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
..+.....+.+.|++++|+.+|+.+..... .+...+..+...+...|..++|..+++.... | +...|..+-..+.
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~ 448 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHH
Confidence 344444556677888888888888766442 2333444455566677888888887776654 3 4456777777778
Q ss_pred hccCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDP-DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP-NHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
..|++++|...|+.+.+... .+...|..+...|.+.|++++|.+.|+.+..... .+...|..+...|.+.|++++|+.
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 88888888888888777653 3566778888888888888888888888876543 256778888888888888888886
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHcCCHHHH
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKES----KIVDKLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~----~~p~~~~~~~~la~~~~~~g~~~eA 242 (900)
++..+.. ....+ ....|..+...+.+.|++++|.+.++++.. ..|+ ...+..+...|.+.|++++|
T Consensus 529 lf~~M~~---~Gv~P------D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 529 AYGIMRS---KNVKP------DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HHHHHHH---cCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHH
Confidence 6555432 22211 135777778888888888888888887764 2444 45666777778888888888
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHh
Q 045355 243 AELYRALLSMN-PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNY 321 (900)
Q Consensus 243 ~~~~~~al~~~-p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~ 321 (900)
.++|+.+.+.+ +.+...|..+...+ ...|++++|..+|+++....-
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay--------~k~G~~deAl~lf~eM~~~Gv------------------------- 645 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSC--------SQKGDWDFALSIYDDMKKKGV------------------------- 645 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHcCC-------------------------
Confidence 88888888776 44566666666666 456777777777776643210
Q ss_pred HHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 045355 322 VRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALS 401 (900)
Q Consensus 322 ~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~ 401 (900)
.|+.. +|..+...|.+.|++++|.+
T Consensus 646 -----------------------------------------------------~PD~~--TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 646 -----------------------------------------------------KPDEV--FFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred -----------------------------------------------------CCCHH--HHHHHHHHHHhCCCHHHHHH
Confidence 11111 34555566666677777777
Q ss_pred HHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CChhHHHHHHHHHHHcCChHHHHHHHHHhcccCC
Q 045355 402 KIDEAIEHT-PTVIDLYSVKSRILKHAGDLAAAATLADEARCMDL-ADRYVNSECVKRMLQADQVSLAEKTAALFTKDGD 479 (900)
Q Consensus 402 ~~~~al~~~-P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp-~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~ 479 (900)
+++++.+.. +.+...|..+...|.+.|++++|.+.|++..+... .|...++.+...+.+.|++++|.+++..+.+.+-
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 776666543 23455666666667777777777777766654321 1234455555556666777777666665544322
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 045355 480 QHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKH 519 (900)
Q Consensus 480 ~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~ 519 (900)
... .. .+..+..+|.+.|++++|.+.|..+.+.
T Consensus 751 ~Pd-~~------Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 751 CPN-TI------TYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CCC-HH------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111 00 1123445666677777777777666543
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=8.1e-18 Score=181.94 Aligned_cols=378 Identities=13% Similarity=0.102 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++.-+..+-..+.++-|...|..+|+.+|.....|...+..--.-|..++-..++++++...|.....|.+++..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34556667777777888888888888999999888888888888788888888888899999988988888988888888
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|+...|...+.++++.+|++..+|..-..+.....+++.|...|.++....|. ...|+..+.....+++.++|++++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHH
Confidence 8899999999999999999998888888888888888899999999888886665 456888888888888999998776
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRA 248 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 248 (900)
+...+.+ |....+|+.+|+++.++++.+.|.+.|...++.+|..+..|..++.+-.+.|+.-.|..++++
T Consensus 675 Ee~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 675 EEALKSF----------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 5544443 455688889999999999999999999988889999989999999998888899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhc
Q 045355 249 LLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTK 328 (900)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~ 328 (900)
+.-.||++...|......- +..|..+.|..+..++++.+|++...+.- ++.
T Consensus 745 arlkNPk~~~lwle~Ir~E--------lR~gn~~~a~~lmakALQecp~sg~LWaE------------aI~--------- 795 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRME--------LRAGNKEQAELLMAKALQECPSSGLLWAE------------AIW--------- 795 (913)
T ss_pred HHhcCCCcchhHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCccchhHHH------------HHH---------
Confidence 9989999988888777765 56788888988888998888887654311 111
Q ss_pred CCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 045355 329 GVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIE 408 (900)
Q Consensus 329 ~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~ 408 (900)
+....++...... ++..+...+. ++...|..++...++++|.++|.++++
T Consensus 796 -----------le~~~~rkTks~D-------ALkkce~dph------------Vllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 796 -----------LEPRPQRKTKSID-------ALKKCEHDPH------------VLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred -----------hccCcccchHHHH-------HHHhccCCch------------hHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111122111222 2333333332 677888999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHH
Q 045355 409 HTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVK 456 (900)
Q Consensus 409 ~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~ 456 (900)
.+|++.++|...-..+...|.-++-.+.|.++..-+|.....+....+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 999999999999999999999999999999999999988766654443
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=3.1e-17 Score=198.53 Aligned_cols=457 Identities=10% Similarity=0.006 Sum_probs=354.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFP--EHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--DIKSHVCWHVYGLLY 87 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~ 87 (900)
+-..+..+...|++++|+..|+.+....| -+..++..+...+...++.+.|..++..+.+. .| +...+..+...|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 33444556678999999999999876543 35678888888999999999999999988874 45 467788999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN-HRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..|+++++..+. +...+..+..++...|....+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 999999999999998753 35678999999999999999999999999876532 34567777788888899999986
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELY 246 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 246 (900)
+.....+ .... ....++..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+.+|
T Consensus 246 l~~~~~~---~g~~------~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 246 LHCCVLK---TGVV------GDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HHHHHHH---hCCC------ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 6554332 2221 1235777889999999999999999997643 46778999999999999999999999
Q ss_pred HHHHHhC-CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhc--CcchhhhhchhhcccchHHHHHHHHhHH
Q 045355 247 RALLSMN-PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQY--TWSSAVKRIPLDFLQGEKFREAAFNYVR 323 (900)
Q Consensus 247 ~~al~~~-p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~l~l~~~~~~~~~~a~~~~~~ 323 (900)
+++.+.. ..+...+..+...+ ...|+++++.+++..+.+.. |+......+...|...+++++|...|.+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~--------~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIF--------SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH--------HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 9998754 22344566666665 55789999999999998874 3334556677778888999999988876
Q ss_pred hhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 045355 324 PLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 324 ~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~ 403 (900)
.. ..+..+++.+...|...++.+.+.++++.+...- ..|+.. ++..+...+.+.|+.++|.++|
T Consensus 386 m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g------------~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 386 MP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG------------VAPNHV--TFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------CCCCHH--HHHHHHHHHhcCCcHHHHHHHH
Confidence 53 2355678889999999999888888887764321 123333 5677788899999999999999
Q ss_pred HHHHHcCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCc
Q 045355 404 DEAIEHTP--TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQ 480 (900)
Q Consensus 404 ~~al~~~P--~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~ 480 (900)
+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...|+ ..++..+...+...|+++.|...+....+ ++..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99987543 34467889999999999999999999864 23333 34566666677789999999998877665 3322
Q ss_pred CCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 045355 481 HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKH 519 (900)
Q Consensus 481 ~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~ 519 (900)
... +..++.+|.+.|++++|.+.++.+.+.
T Consensus 528 -~~~--------y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 528 -LNN--------YVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -Ccc--------hHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 122 237889999999999999999887654
No 40
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=9.8e-18 Score=202.94 Aligned_cols=429 Identities=11% Similarity=0.046 Sum_probs=344.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKK--FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
+....+-..+..+...++++.|..++..+.+. .| +..++..+...|.+.|++++|.++|++... | +...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHH
Confidence 33344444555566789999999999988773 44 578888999999999999999999998754 3 556799999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPD-NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK-PNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 162 (900)
..|.+.|++++|+..|++..+..+. +...+..+...+...|+.+.+.+.+..+++.. ..+...+..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 9999999999999999999876543 45667788888889999999999888887754 235667888999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHcCCHH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK--IVDKLAYKEQEVSLLVKIGRLE 240 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~ 240 (900)
+|.++++.+ .. .....|..+...|...|++++|+..|+++... .|+ ...+..+...+.+.|+++
T Consensus 277 ~A~~vf~~m---~~----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 277 DARCVFDGM---PE----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHHHhC---CC----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchH
Confidence 999766543 11 12368889999999999999999999998764 444 457788899999999999
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHH
Q 045355 241 EAAELYRALLSMN-PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAF 319 (900)
Q Consensus 241 eA~~~~~~al~~~-p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~ 319 (900)
+|..++..+++.. +.+...+..+...| ...|++++|..+|+++.+ |+...+..+...|...++.++|..
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y--------~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLY--------SKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHH--------HHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 9999999999887 56667778888877 568999999999998854 555667778888889999999999
Q ss_pred HhHHhhhhcCCC--hhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 320 NYVRPLLTKGVP--SLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 320 ~~~~~~l~~~~p--~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
.|.+.....-.| .+|..+...+...+..+.+.+++..+.+..... |+.. .|..+...|.+.|+++
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~-----------p~~~--~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-----------PRAM--HYACMIELLGREGLLD 479 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-----------CCcc--chHhHHHHHHhcCCHH
Confidence 888866433333 567777788888999888888887775432221 2211 5778889999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD 477 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~ 477 (900)
+|.+.+++. ...| +...|..+...+...|+++.|...+++.++++|.+......++..+.+.|++++|.+++..+.+.
T Consensus 480 eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999864 2333 45678899999999999999999999999999998866677888999999999999999887764
Q ss_pred C
Q 045355 478 G 478 (900)
Q Consensus 478 ~ 478 (900)
+
T Consensus 558 g 558 (697)
T PLN03081 558 G 558 (697)
T ss_pred C
Confidence 3
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.8e-18 Score=175.72 Aligned_cols=317 Identities=15% Similarity=0.061 Sum_probs=259.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKK-FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY 93 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 93 (900)
.+..+-+..+.++++.-++..... .|.+.-.-...|.+.+.+.++++|+..|+...+.+|-...-...+.++++-..+-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344455556888888888888887 8999988899999999999999999999999999998877777777777666654
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 94 REAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
.+---.-+.+..++.-.+....-+|+-|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|+ +.|+.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi---~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI---ESYRR 389 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH---HHHHH
Confidence 444444556677777777888889999999999999999999999999999999999999999999999999 88999
Q ss_pred hhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 174 TLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
+++.+ |..-.+|+.+|+.|.-++.+.=|+-+|+++....|.+...|..+|.+|.++++.++|+++|.+++..+
T Consensus 390 Avdi~-------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 390 AVDIN-------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHhcC-------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99887 45558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChh
Q 045355 254 PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSL 333 (900)
Q Consensus 254 p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~ 333 (900)
..+..++..|+.++ -..++..+|...|++.++..-
T Consensus 463 dte~~~l~~LakLy--------e~l~d~~eAa~~yek~v~~~~------------------------------------- 497 (559)
T KOG1155|consen 463 DTEGSALVRLAKLY--------EELKDLNEAAQYYEKYVEVSE------------------------------------- 497 (559)
T ss_pred ccchHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHH-------------------------------------
Confidence 88999999999998 345667777777766543210
Q ss_pred hhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 045355 334 FSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTV 413 (900)
Q Consensus 334 ~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~ 413 (900)
+ .....+....+..+||..+.+.+++++|-.+..+++.-++..
T Consensus 498 ---------------------------~----------eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 498 ---------------------------L----------EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred ---------------------------h----------hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 0 000001111255679999999999999999999998887655
Q ss_pred hHHHHHHHHH
Q 045355 414 IDLYSVKSRI 423 (900)
Q Consensus 414 ~~~~~~la~i 423 (900)
-++-..+-.|
T Consensus 541 eeak~LlRei 550 (559)
T KOG1155|consen 541 EEAKALLREI 550 (559)
T ss_pred HHHHHHHHHH
Confidence 5444444333
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-17 Score=177.74 Aligned_cols=399 Identities=15% Similarity=0.084 Sum_probs=278.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
...+|...+..|+++.|+.+|..++.++|.++..|.+...+|...|+|++|++.-.+.++++|+-+..|..+|..+.-+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH---------------------HHHHHHHhhhccCCCCCcc
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV---------------------EILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---------------------~~l~~~~~~l~~~~~~~~~ 184 (900)
+|++|+..|.+.|+.+|++.....+++.++.......+.. ..+......+..+|..-..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999999999999999988882221000000 0011111122222111000
Q ss_pred hhchhHHHHHHHHHHHHcCCH-HHHHHHHHHHhhhcC------------C---------HHHHHHHHHHHHHHcCCHHHH
Q 045355 185 RCEHGEMLLYKISLLEECGSF-ERALAEMHKKESKIV------------D---------KLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~-~~Al~~l~~al~~~p------------~---------~~~~~~~la~~~~~~g~~~eA 242 (900)
....+...-.++.+. ..+.. ..+.......-...| + ...-...+|....+..++..|
T Consensus 165 ~l~d~r~m~a~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLK-GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred ccccHHHHHHHHHHh-cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000001111111111 00000 000000000000011 1 123456789999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch--------hhhhchhhcccchHH
Q 045355 243 AELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS--------AVKRIPLDFLQGEKF 314 (900)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~l~l~~~~~~~~ 314 (900)
++.|..+++++ .+..++...+.++ +..|.+.+.+.....+.+..-... ...+++-.+...+.+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~--------~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVY--------LERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHH--------HhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 99999999999 8888888888887 667777777776666655433222 223355566667888
Q ss_pred HHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q 045355 315 REAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRG 394 (900)
Q Consensus 315 ~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g 394 (900)
+.++..|.+.+...-.|.....+ ..+++.+..........|.. .---..-|..+++.|
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~l----------k~~Ek~~k~~e~~a~~~pe~------------A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKL----------KEAEKALKEAERKAYINPEK------------AEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHH----------HHHHHHHHHHHHHHhhChhH------------HHHHHHHHHHHHhcc
Confidence 88888888877554455444433 23444444443333222211 112345589999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHh
Q 045355 395 QYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALF 474 (900)
Q Consensus 395 ~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~ 474 (900)
+|..|+..|.++|..+|+++.+|.++|-+|..+|.+..|+...+.++++||+..-.+..-+..+.-..++++|.+++...
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998744444455555567899999888776
Q ss_pred cc
Q 045355 475 TK 476 (900)
Q Consensus 475 ~~ 476 (900)
..
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 65
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=5e-17 Score=183.40 Aligned_cols=307 Identities=12% Similarity=0.031 Sum_probs=234.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHH
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI-EILRDLSLLQAQ 123 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~~~la~~~~~ 123 (900)
.....|.+....|+++.|.+.+.++.+..|.....+...|.++...|+++.|..+|.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3456677888899999999999999998888888888889999999999999999999999888875 566667999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG 203 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 203 (900)
.|+++.|...++.+++..|+++.++..++.++...|++++|.+.+..+.+....++ .+...+......-+...+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~------~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD------EEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977777665422111 111122222222223445
Q ss_pred CHHHHHHHHHHHhhhcC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCC
Q 045355 204 SFERALAEMHKKESKIV----DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSG 279 (900)
Q Consensus 204 ~~~~Al~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~ 279 (900)
..+++.+.+..+....| +++.++..++..+...|++++|...++++++..|++......+...+. ....+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~------~l~~~ 313 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP------RLKPE 313 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh------hcCCC
Confidence 55556677777777777 578999999999999999999999999999999998753211111110 02234
Q ss_pred cHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHH
Q 045355 280 EIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEH 359 (900)
Q Consensus 280 ~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~ 359 (900)
+.+.+...++++.+..|+++.
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~----------------------------------------------------------- 334 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPK----------------------------------------------------------- 334 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChh-----------------------------------------------------------
Confidence 455555555555444443321
Q ss_pred hhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 360 SIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKID--EAIEHTPTVIDLYSVKSRILKHAGDLAAAATLA 437 (900)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~--~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~ 437 (900)
...+..+|+++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++|
T Consensus 335 --------------------~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 335 --------------------CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred --------------------HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 0146688999999999999999999 57888887766 559999999999999999999
Q ss_pred HHHHhc
Q 045355 438 DEARCM 443 (900)
Q Consensus 438 ~~al~l 443 (900)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998764
No 44
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.2e-15 Score=162.63 Aligned_cols=459 Identities=14% Similarity=0.109 Sum_probs=294.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
.++|.....+...|+|++|++.+.+++...|++..++.....++...++|++|+.+.+.-...... ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999666554332222 2233789999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 90 DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
.+..++|+.+++ -.++.+..++...|.+++++|+|++|++.|+.+++.+.++.+........-.. .+..+ +
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-----a~l~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-----AALQV-Q 162 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----HhhhH-H
Confidence 999999999998 45677777899999999999999999999999998877665543332221111 01100 1
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV---------------DKLAYKEQEVSLLV 234 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p---------------~~~~~~~~la~~~~ 234 (900)
..+.+...+ ...-+.+++.+.++...|+|.+|++.+++++.++. +-..+...++.++.
T Consensus 163 -~~q~v~~v~------e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 163 -LLQSVPEVP------EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred -HHHhccCCC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 222233222 12347899999999999999999999999954321 11346788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHH
Q 045355 235 KIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKF 314 (900)
Q Consensus 235 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~ 314 (900)
.+|+.++|..+|...+..+|-+........+-+-..+.+..+..| .++..++......+....
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~---~~l~~k~~~~~~l~~~~l-------------- 298 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG---DLLKSKKSQVFKLAEFLL-------------- 298 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch---HHHHHHHHHHHHhHHHHH--------------
Confidence 999999999999999999988865544433322111111112222 223333332222211110
Q ss_pred HHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q 045355 315 REAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRG 394 (900)
Q Consensus 315 ~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g 394 (900)
..+..+.-.....+.+.+-...++.+...+.. .. . ....|.....++.. .....+..
T Consensus 299 --------~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~------a~----l----p~~~p~~~~~~ll~-~~t~~~~~ 355 (652)
T KOG2376|consen 299 --------SKLSKKQKQAIYRNNALLALFTNKMDQVRELS------AS----L----PGMSPESLFPILLQ-EATKVREK 355 (652)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------Hh----C----CccCchHHHHHHHH-HHHHHHHH
Confidence 00000000000011111100111111111111 11 1 12233333333333 33333334
Q ss_pred CHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcC-ChhHHHHHHHHHHHcCChHH
Q 045355 395 QYDVALSKIDEAIEHTPTV-IDLYSVKSRILKHAGDLAAAATLADEARCM------DLA-DRYVNSECVKRMLQADQVSL 466 (900)
Q Consensus 395 ~~~~Al~~~~~al~~~P~~-~~~~~~la~i~~~~G~~~eA~~~~~~al~l------dp~-d~~l~~~~a~~~l~~g~~ee 466 (900)
.+.+|.+++....+..|.. ..+.+.++.+...+|+++.|++.+...++. +-. -|.+-..+..++.+.++.+-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 7999999999999999977 778899999999999999999999943322 111 13445555666667777776
Q ss_pred HHHHHHHhcc---cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhh
Q 045355 467 AEKTAALFTK---DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFD 529 (900)
Q Consensus 467 A~~~~~~~~~---~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~d 529 (900)
|..++....+ ...+.. ...-|+|- ..+...+|.|+-.+|...++++.+.++...+-+.+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s--~~l~~~~~--~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGS--IALLSLMR--EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHHHHHhcccc--hHHHhHHH--HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 7666533322 111111 11223332 67888889999999999999999988776654443
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=6.8e-18 Score=197.58 Aligned_cols=233 Identities=13% Similarity=0.055 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHh---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCcH
Q 045355 10 ANLFKLIVKSYE---TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCM---------DRKSEAYELVRLGVKNDIKSH 77 (900)
Q Consensus 10 ~~l~~~a~~~~~---~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al~~~p~~~ 77 (900)
..++.+|...+. .+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH
Confidence 345666654443 35678999999999999999999998888877633 347899999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..++++++++|.++..+..++.+++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777777888
Q ss_pred cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC
Q 045355 158 NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG 237 (900)
Q Consensus 158 ~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g 237 (900)
.|++++|+. .+.+.+...+ |..+..+..+|.++...|++++|...+.++....|+...++..++..|...|
T Consensus 419 ~g~~eeA~~---~~~~~l~~~~------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 419 HTGIDDAIR---LGDELRSQHL------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred ccCHHHHHH---HHHHHHHhcc------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 899999984 4444444332 3445678888999999999999999999988888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhC
Q 045355 238 RLEEAAELYRALLSMN 253 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~ 253 (900)
+ +|...++.+++..
T Consensus 490 ~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 490 E--RALPTIREFLESE 503 (553)
T ss_pred H--HHHHHHHHHHHHh
Confidence 4 7777777766543
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=7.3e-15 Score=179.82 Aligned_cols=454 Identities=12% Similarity=0.083 Sum_probs=333.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI-KSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
+...|...+|+.+++.+.. | +..+|..+-..+...|++++|..+++++.+... .+...|..+...|.+.|++++|.
T Consensus 416 ~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 4467899999999887754 4 567888888899999999999999999988643 35677889999999999999999
Q ss_pred HHHHHHHhhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 98 KCYRNALRIDPD-NIEILRDLSLLQAQMRDLTGFVETRQQLLTL--KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 98 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
+.|+++.+.+.. +...|..+...|.+.|++++|+..|..+... .| +...|..+...+.+.|++++|.+++..+...
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999877543 7888999999999999999999999999764 34 4677999999999999999999877776532
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI-VDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
- .... | ....+..+...|.+.|++++|.+.|+.+.+.. +.+...|..+...|.+.|++++|..+|.++.+..
T Consensus 572 ~-~gi~-----P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 572 T-HPID-----P-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred c-CCCC-----C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 1 1111 1 23678888899999999999999999998875 4567888999999999999999999999999874
Q ss_pred --CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhc--CcchhhhhchhhcccchHHHHHHHHhHHhhhhc-
Q 045355 254 --PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQY--TWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTK- 328 (900)
Q Consensus 254 --p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~- 328 (900)
|+ ...|..+...+ ...|++++|.++++.+.+.. |+...+..+...|...++++++...|.+.....
T Consensus 645 v~PD-~~TynsLI~a~--------~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 645 VKPD-EVFFSALVDVA--------GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred CCCC-HHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 54 55666676666 55789999999999998763 555566777788888999999988887654322
Q ss_pred -CCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 045355 329 -GVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAI 407 (900)
Q Consensus 329 -~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al 407 (900)
....+++.+...|...++.+.+.+++..+... ...|+.. +|..+...+.+.|++++|.+++.+++
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~------------Gi~Pd~~--Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRL------------GLCPNTI--TYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------------CCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23456888888888889988888887776421 1123333 56667788889999999999999998
Q ss_pred HcCC-CchHHHHHH-HHHH---HH-------------------cCCHHHHHHHHHHHHhcC--cCChhHHHHHHHHHHHc
Q 045355 408 EHTP-TVIDLYSVK-SRIL---KH-------------------AGDLAAAATLADEARCMD--LADRYVNSECVKRMLQA 461 (900)
Q Consensus 408 ~~~P-~~~~~~~~l-a~i~---~~-------------------~G~~~eA~~~~~~al~ld--p~d~~l~~~~a~~~l~~ 461 (900)
+... .+...+..+ +.+. .. .+..+.|..+|++.++.. |+...++..++ .++..
T Consensus 782 k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~-cl~~~ 860 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG-CLQLP 860 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH-Hhccc
Confidence 7543 122222222 2111 11 122456788888877653 44444455443 44667
Q ss_pred CChHHHHHHHHHhcccCCcCC-ChhhhhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 045355 462 DQVSLAEKTAALFTKDGDQHN-NLHDMQCMWYELASGESYFRQGDL-GRALKKFLAVEK 518 (900)
Q Consensus 462 g~~eeA~~~~~~~~~~~~~~~-~l~~~q~~w~~~~lg~~y~r~g~~-~~Alk~~~~v~~ 518 (900)
+..+.+..++..+...+.... ..+ ..+-+.+ |++ .+|+..|+.+.+
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y--------~~Li~g~---~~~~~~A~~l~~em~~ 908 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNL--------STLVDGF---GEYDPRAFSLLEEAAS 908 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhh--------HHHHHhh---ccChHHHHHHHHHHHH
Confidence 778888777776655433222 111 1222222 443 578888888765
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-16 Score=164.47 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=295.1
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN------------ 72 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------ 72 (900)
.+..+......+..+...++-+.|+....++.... ..+....+++..+..-++..++.-.+...+..
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll 171 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALL 171 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHH
Confidence 44555566666777777899999998877654321 23556677777777766655555444444321
Q ss_pred -------------------CCCcHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH
Q 045355 73 -------------------DIKSHVCW---HVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130 (900)
Q Consensus 73 -------------------~p~~~~~~---~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (900)
+|..++.| ..++.++....-+..+..++-.-...-|+|...+..+|.++...|++++|
T Consensus 172 ~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 172 ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 22233222 44566666666666777777777788899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHH
Q 045355 131 VETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALA 210 (900)
Q Consensus 131 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~ 210 (900)
+..|+++..++|......-.+|..+...|+++.-..+...+.... ..+..-|+--+.++...+++..|+.
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~----------~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV----------KYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh----------hcchhhhhhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999998875554433222 1234567778888899999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHH
Q 045355 211 EMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKS 290 (900)
Q Consensus 211 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~ 290 (900)
+-++++..+|.+...+...|.++...|+.++|+-.|+.+..+.|...+.|.+|..+| +..|.+.+|.-.-..
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY--------LA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY--------LAQKRFKEANALANW 393 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH--------HhhchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 778999999999988
Q ss_pred HHHhcCcchhhh-hch-hhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCC
Q 045355 291 LAQQYTWSSAVK-RIP-LDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYP 368 (900)
Q Consensus 291 ~~~~~p~~~~~~-~l~-l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~ 368 (900)
.....|.+.... .++ ...+. ++.- -+++-.-+.+.+...|.+.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~--------------------------------dp~~---rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFP--------------------------------DPRM---REKAKKFAEKSLKINPIYT 438 (564)
T ss_pred HHHHhhcchhhhhhhcceeecc--------------------------------Cchh---HHHHHHHHHhhhccCCccH
Confidence 888888776332 221 11111 1111 2233333444566666655
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 369 GREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 369 ~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
+ +-..+|.++...|.+..++..+++++...|++ .++..+|.++...+.+++|.+.|..|+.+||+|.
T Consensus 439 ~------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 439 P------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred H------------HHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 4 77889999999999999999999999999764 5899999999999999999999999999999986
Q ss_pred h
Q 045355 449 Y 449 (900)
Q Consensus 449 ~ 449 (900)
.
T Consensus 506 ~ 506 (564)
T KOG1174|consen 506 R 506 (564)
T ss_pred H
Confidence 3
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.80 E-value=5.9e-17 Score=163.05 Aligned_cols=337 Identities=14% Similarity=0.112 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
.....-+..|..++..|++..|+..|..+++.+|++-.+++..|.+|..+|+-.-|+..+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIE---ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (900)
+..+|.+++|...|++++..+|++.. ++..++.+..+. .+......+...|++..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~----------------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW----------------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH----------------------HHHHHHHHHhcCCchhh
Confidence 99999999999999999999996543 333333222111 11122233445677777
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 243 (900)
|+..+.. .++.. |.....+...+.+|...|+...|+.-+..+-++..++.+.++.++.+++..|+.+.++
T Consensus 174 ai~~i~~---llEi~-------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 174 AIEMITH---LLEIQ-------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHHHHHH---HHhcC-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 7744444 33333 4455677777778888888888888888777777778888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHH---HHHHh-cccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHH
Q 045355 244 ELYRALLSMNPDNYSYYEG---LQKCL-GLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAF 319 (900)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~---l~~~~-~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~ 319 (900)
...++.++++|+....+-. +-.+- .+.+....+..++|.++++..+..++..|....++.-
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--------------- 308 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--------------- 308 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee---------------
Confidence 8888888888877543322 21111 0011111134566667777777776666654322110
Q ss_pred HhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHH
Q 045355 320 NYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVA 399 (900)
Q Consensus 320 ~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~A 399 (900)
.+..+...|...++ ..+++....+.+...++.. .++...|..|.-...|+.|
T Consensus 309 -------------~~r~~c~C~~~d~~---~~eAiqqC~evL~~d~~dv------------~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 309 -------------GFRVLCTCYREDEQ---FGEAIQQCKEVLDIDPDDV------------QVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred -------------eeheeeecccccCC---HHHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhhHHHHHH
Confidence 01111222222222 3344444444444332222 2788999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHH
Q 045355 400 LSKIDEAIEHTPTVIDLYS 418 (900)
Q Consensus 400 l~~~~~al~~~P~~~~~~~ 418 (900)
+..|++|.+.+|++..+.-
T Consensus 361 I~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHhcCcccHHHHH
Confidence 9999999999998766543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=1.7e-19 Score=193.40 Aligned_cols=264 Identities=20% Similarity=0.209 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKK--FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
...+..|..++..|++++|++++++.+.. .|+++..|..+|.+....|++++|+..|++++..++.++..+..++.+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34457799999999999999999776654 488999999999999999999999999999999999988888888888
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK--PNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
...+++++|+..+.++.+..+ ++..+...+.++...++++++...+.++.... +.++..|..+|.++...|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 799999999999999988664 56777888889999999999999999988755 678889999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 245 (900)
..+.+++..+ |.+..+...++.++...|+++++.+.+.......|+++.++..+|.++..+|++++|+.+
T Consensus 167 ---~~~~~al~~~-------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 167 ---RDYRKALELD-------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp ---HHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred ---HHHHHHHHcC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 6667777766 566788999999999999999999999998888888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
|++++..+|+++..+..++.++ ...|+.++|..++.++..
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l--------~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADAL--------EQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHH--------T-----------------
T ss_pred cccccccccccccccccccccc--------cccccccccccccccccc
Confidence 9999999999999999999999 778999999999988754
No 50
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.80 E-value=1.4e-15 Score=172.02 Aligned_cols=444 Identities=11% Similarity=0.002 Sum_probs=286.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYR 101 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~ 101 (900)
.++...|+..|-++++++|..+.++..+|.+|....+...|..+|++|.++|+.+..++-..+..|.+..++++|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34567778888888888888888888888888877788888888888888888888888888888888888888877755
Q ss_pred HHHhhCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 102 NALRIDPDN--IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 102 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
.+-+..|.. ...|..+|..|...+++.+|+..|+.+++.+|.+...|..+|.+|...|++..|++ .|.++...+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK---vF~kAs~Lr- 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK---VFTKASLLR- 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH---hhhhhHhcC-
Confidence 555555442 23355677778888888888888888888888888888888888888888888874 444454444
Q ss_pred CCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 180 PPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAY-------KEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 180 ~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~-------~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
|.+.-..+..+.+....|+|.+|+..+...+......... +.+.+..+.-.|-+..|..++++.++.
T Consensus 627 ------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 627 ------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred ------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4555666777777788888888888887776654443333 333333334445445555555554442
Q ss_pred -------C-CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhh--------hchhhcccchH-HH
Q 045355 253 -------N-PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVK--------RIPLDFLQGEK-FR 315 (900)
Q Consensus 253 -------~-p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--------~l~l~~~~~~~-~~ 315 (900)
. -++.-.|..++....+ |-.. -|+-+... ......+...+ .-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~------------------f~q~---e~~~vn~h~l~il~~q~e~~~~l~~~d~l~ 759 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYI------------------FSQE---EPSIVNMHYLIILSKQLEKTGALKKNDLLF 759 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHH------------------HHHh---cccchHHHHHHHHHHHHHhcccCcchhHHH
Confidence 2 3333334443333211 1111 12111000 00111111111 11
Q ss_pred HHHHHhHHhhhhcCCChhhhchhhhhcC-----CChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHH
Q 045355 316 EAAFNYVRPLLTKGVPSLFSDLSPLYDQ-----PGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHY 390 (900)
Q Consensus 316 ~a~~~~~~~~l~~~~p~~~~~L~~ly~~-----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y 390 (900)
-+...+...+--...+..+.+|+.-|.. ..-......++..+.+++........ .|..||.+
T Consensus 760 Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~------------~WnaLGVl- 826 (1238)
T KOG1127|consen 760 LGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG------------LWNALGVL- 826 (1238)
T ss_pred HHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH------------HHHHHHHh-
Confidence 2223333333222346666666543322 11112225566666666654333322 56788888
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHH
Q 045355 391 DRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 391 ~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
...|++.-|...|-+.+...|.+...|.++|.++....+++-|...|.+++.++|.|..-+..-+......|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999998877778888888888888777
Q ss_pred HHHhcc----cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045355 471 AALFTK----DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAV 516 (900)
Q Consensus 471 ~~~~~~----~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v 516 (900)
+..-+. .+.... .-|....-..+..+|++++-+..-+++
T Consensus 907 faHs~el~~~~gka~~-------f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKK-------FQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHhhHHhhccccccch-------hhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 644211 122111 112234556777888877666555544
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=8.2e-19 Score=188.19 Aligned_cols=261 Identities=21% Similarity=0.207 Sum_probs=101.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKN--DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
.+|.+++..|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3455555555555555555443332 255555555555555555555555555555555555555555555555 4555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCH
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSF 205 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 205 (900)
++++|+.++.+.++..+ ++..+ .....++...|++
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l--------------------------------------------~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYL--------------------------------------------LSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred ccccccccccccccccc-ccchh--------------------------------------------hHHHHHHHHHhHH
Confidence 55555555544443322 22333 3344445555555
Q ss_pred HHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHH
Q 045355 206 ERALAEMHKKESK--IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDE 283 (900)
Q Consensus 206 ~~Al~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 283 (900)
+++...++++... .+.++.++..+|.++.+.|++++|+..|+++++.+|+++.+...++.++ +..|+.++
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l--------i~~~~~~~ 198 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL--------IDMGDYDE 198 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHCCChHH
Confidence 5555555554433 2567788888899999999999999999999999999988888888887 66777777
Q ss_pred HHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcc
Q 045355 284 LDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGT 363 (900)
Q Consensus 284 A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~ 363 (900)
+...+..+....|.++
T Consensus 199 ~~~~l~~~~~~~~~~~---------------------------------------------------------------- 214 (280)
T PF13429_consen 199 AREALKRLLKAAPDDP---------------------------------------------------------------- 214 (280)
T ss_dssp HHHHHHHHHHH-HTSC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHCcCHH----------------------------------------------------------------
Confidence 7666665543322211
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 364 TGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
. .+..+|.+|...|++++|+.+|++++...|+++..+..+|.++...|+.++|..++++++..
T Consensus 215 -----~------------~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 215 -----D------------LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -----C------------HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred -----H------------HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 34678899999999999999999999999999999999999999999999999999998753
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=1.7e-16 Score=179.13 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-VCWHVYGLL 86 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~ 86 (900)
+....+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3456678899999999999999999999999998888889999999999999999999999999988886 466667999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI----GFAVSHHLNSNGS 162 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~ 162 (900)
+...|+++.|+..++..++..|+++.++..++.++.+.|++++|.+.+.++.+..+.++.... .....+...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987655444332 1111123333334
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHH--HHHHHHHHHcCCHH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYK--EQEVSLLVKIGRLE 240 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~ 240 (900)
++.+.+..+...+... .+....++..++..+...|++++|++.++++++..|++.... ..........++..
T Consensus 243 ~~~~~L~~~~~~~p~~------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRH------RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred cCHHHHHHHHHHCCHH------HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 3443334333322110 134568999999999999999999999999999999987532 23334445568899
Q ss_pred HHHHHHHHHHHhCCCCH--HHHHHHHHHhcccccCCCCCCCcHHHHHHHHHH--HHHhcCc
Q 045355 241 EAAELYRALLSMNPDNY--SYYEGLQKCLGLYRDNGNYSSGEIDELDALYKS--LAQQYTW 297 (900)
Q Consensus 241 eA~~~~~~al~~~p~~~--~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~--~~~~~p~ 297 (900)
.++..++++++..|+++ .+...+|.++ +..|++++|.+.|+. +.+..|+
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~--------~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLL--------MKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH--------HHcccHHHHHHHHHHhHHhhcCCC
Confidence 99999999999999999 8888999998 678999999999984 4444443
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.4e-17 Score=167.23 Aligned_cols=402 Identities=16% Similarity=0.100 Sum_probs=279.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEH-----GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
..|..++.+.+|.+|+++|..+|..-|.- ..++..+|..+.+.|+|+.|+..|+..++..|+... -+++..|++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f 320 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAF 320 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhhe
Confidence 44567788899999999999999988863 457788899999999999999999999999997654 457889999
Q ss_pred hccCHHHHHHHHHHHHhhC--C---------CcH-HHHHHHHH---HHH--Hhc---CHHHHHHHHHHHHH--hCCCCH-
Q 045355 89 SDREYREAIKCYRNALRID--P---------DNI-EILRDLSL---LQA--QMR---DLTGFVETRQQLLT--LKPNHR- 145 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~--p---------~~~-~~~~~la~---~~~--~~g---~~~~A~~~~~~al~--~~p~~~- 145 (900)
..|+-++-.+.|.+.+.+- | +++ ..+..-+. .+. ... +-++++..--+++. +.|+..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 9999999999999998651 1 111 11222111 111 111 22233333222221 222221
Q ss_pred -------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc--CC
Q 045355 146 -------------------MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC--GS 204 (900)
Q Consensus 146 -------------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~--g~ 204 (900)
+.-++.+.-+.+.|+++.|+++|.-|++.-. ...+.+-.++..+++.+ .+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn---------k~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN---------KTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc---------hhhHHHhhhhHHHHHHhcccc
Confidence 2234567778899999999998887765321 12234455555555553 47
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHH
Q 045355 205 FERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDEL 284 (900)
Q Consensus 205 ~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A 284 (900)
+.+|..+-..++..+..++.++.+.|.+-+..|++++|.+.|++++..+.....++++++..+ -..|+.++|
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~--------e~~~~ldea 543 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA--------EALGNLDEA 543 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH--------HHhcCHHHH
Confidence 889999999999999999999999999999999999999999999998888889999988877 457889999
Q ss_pred HHHHHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhh-hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 045355 285 DALYKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPL-LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIG 362 (900)
Q Consensus 285 ~~~~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~-l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~ 362 (900)
+..|-++...--++. ....++..|-..++..++++.+.+.. +.+..|..+..|+.+|...++.. +++..+..+..
T Consensus 544 ld~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks---qafq~~ydsyr 620 (840)
T KOG2003|consen 544 LDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS---QAFQCHYDSYR 620 (840)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh---hhhhhhhhccc
Confidence 999988876655444 33556666666677777777777665 55667777777777776666532 33333333322
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 363 TTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARC 442 (900)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ 442 (900)
- ||. +-.+. -.||..|....-+++|+.+|+++--+.|+.....+..+.|+.+.|+|.+|.+.|+..-.
T Consensus 621 y---fp~-----nie~i----ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 621 Y---FPC-----NIETI----EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred c---cCc-----chHHH----HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2 221 11222 23556666666677777777777777777777777777777777777777777777777
Q ss_pred cCcCCh
Q 045355 443 MDLADR 448 (900)
Q Consensus 443 ldp~d~ 448 (900)
.-|.|.
T Consensus 689 kfpedl 694 (840)
T KOG2003|consen 689 KFPEDL 694 (840)
T ss_pred hCccch
Confidence 777665
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-17 Score=178.83 Aligned_cols=246 Identities=16% Similarity=0.145 Sum_probs=210.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIK 98 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~ 98 (900)
+++.|+..+=.-+-.+.+..+|+.+..|+..|..|...|++.+|..+|.++..++|....+|..+|..+...|..++|+.
T Consensus 288 l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 288 LYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHH
Confidence 33333333333333333444555566888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 99 CYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
+|..|-++-|........+|.-|.++++++-|...|.+++.+.|.++-....+|.+.+..+.|.+|...++.....++..
T Consensus 368 aY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 368 AYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999888889999999999999999999999999999999999999999999999999996666554333322
Q ss_pred CCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045355 179 YPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYS 258 (900)
Q Consensus 179 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 258 (900)
. .+.+.+...+.++|.++.+++.+++|+..+++++...|.++.++..+|.+|..+|+++.|++.|.+++-+.|++..
T Consensus 448 ~---~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 448 L---NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred c---ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 1 1113456789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 045355 259 YYEGLQKCL 267 (900)
Q Consensus 259 ~~~~l~~~~ 267 (900)
.-..|+.+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 777777665
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=5.3e-16 Score=174.18 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=219.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHhccCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHH
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY-GLLYRSDREYREAIKCYRNALRIDPDNIEI-LRDLSLLQAQ 123 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~eAi~~~~~al~~~p~~~~~-~~~la~~~~~ 123 (900)
.+..|.+....|+++.|.+.+.++-...+. +..++.+ +......|+++.|..+|.++.+.+|++... ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 445666677778888888777766554333 3333344 555588888888888888888888877533 3344778888
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchh----HHHHHHHHHH
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHG----EMLLYKISLL 199 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~----~~~~~la~~~ 199 (900)
.|+++.|+..++++.+..|+++.++..++.+|...|++++|+.++....+....++ .+.. .++..+....
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~------~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE------EHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877777666543321 1111 1222222222
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCC
Q 045355 200 EECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSG 279 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~ 279 (900)
....+-+.....++......|+++.+...++..+...|+.++|...++++++. |.++......+.+. .+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~----------~~ 308 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLK----------TN 308 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhcc----------CC
Confidence 33334455555556655667788999999999999999999999999999995 44555544444443 57
Q ss_pred cHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHH
Q 045355 280 EIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEH 359 (900)
Q Consensus 280 ~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~ 359 (900)
+.++++...++..+.+|+++.
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~----------------------------------------------------------- 329 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPL----------------------------------------------------------- 329 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHH-----------------------------------------------------------
Confidence 788888888888777776542
Q ss_pred hhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 360 SIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADE 439 (900)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~ 439 (900)
.++.+|.++...|++++|.++|+++++..|+... +..++.++.++|+.++|..+|++
T Consensus 330 ----------------------l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 330 ----------------------LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred ----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999999999998755 66899999999999999999999
Q ss_pred HHhcC
Q 045355 440 ARCMD 444 (900)
Q Consensus 440 al~ld 444 (900)
++.+-
T Consensus 387 ~l~~~ 391 (398)
T PRK10747 387 GLMLT 391 (398)
T ss_pred HHhhh
Confidence 98763
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=2.1e-15 Score=167.46 Aligned_cols=440 Identities=18% Similarity=0.137 Sum_probs=321.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC--CCcHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID--PDNIEILRD 116 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~ 116 (900)
..+++.+|-.+...+.+.|+++.+.+.|++++...-.....|+.++.+|...|.-..|+...+..+... |+++..+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456788888999999999999999999999999888889999999999999999999999999999988 777777666
Q ss_pred HHHH-HHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc----CCHH--HHH--HHHHHHHhhhccCCCCC
Q 045355 117 LSLL-QAQMRDLTGFVETRQQLLTLKPN-----HRMNWIGFAVSHHLN----SNGS--KAV--EILEAYEGTLEDDYPPD 182 (900)
Q Consensus 117 la~~-~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~----g~~~--~A~--~~l~~~~~~l~~~~~~~ 182 (900)
.+.+ ....+.+++++++..+++..... .+..+..+|.+|..+ .... .+. +.++.+++++..+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d---- 474 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD---- 474 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----
Confidence 6654 45679999999999999984321 235566777777544 1111 111 2235666777766
Q ss_pred cchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 183 NERCEHGEMLLYKISLLEECGSFERALAEMHKKESK-IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYE 261 (900)
Q Consensus 183 ~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 261 (900)
+.++.+.++++.-|..+++.+.|+++..++++. ..+++..|..++.++...+++.+|+.+...+++..|+|.....
T Consensus 475 ---~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 475 ---PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred ---CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 344589999999999999999999999999999 5578999999999999999999999999999999999876665
Q ss_pred HHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhh--hhcCCChhhhchhh
Q 045355 262 GLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPL--LTKGVPSLFSDLSP 339 (900)
Q Consensus 262 ~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~--l~~~~p~~~~~L~~ 339 (900)
.-..+- ..-++.++++......+..+.....+..... .+.... ...-+... ...+.++....+..
T Consensus 552 ~~~~i~--------~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~----~g~~~~-lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 552 GKIHIE--------LTFNDREEALDTCIHKLALWEAEYGVQQTLD----EGKLLR-LKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhhhh--------hhcccHHHHHHHHHHHHHHHHhhhhHhhhhh----hhhhhh-hhcccccCcccccccchhhHHHHH
Confidence 555443 4467888888887777665442221110000 000000 00000000 00111122222211
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcccCCCCCCC----CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchH
Q 045355 340 LYDQPGKADILEQLILELEHSIGTTGKYPGRE----EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVID 415 (900)
Q Consensus 340 ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~ 415 (900)
+. ..-..........|.+. ...........|...|..+...++.++|..++.++-.++|..+.
T Consensus 619 l~-------------a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~ 685 (799)
T KOG4162|consen 619 LV-------------ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS 685 (799)
T ss_pred HH-------------HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH
Confidence 11 10000111001111111 11111222335678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHH--HHHHhcc-cCCcCCChhhhhHHHH
Q 045355 416 LYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEK--TAALFTK-DGDQHNNLHDMQCMWY 492 (900)
Q Consensus 416 ~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~--~~~~~~~-~~~~~~~l~~~q~~w~ 492 (900)
.|+..|.++...|++.+|.+.|..|+.+||++..+...+++.+++.|+..-|.. ++.-..+ ++.... .|+
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~ 758 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWY 758 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHH
Confidence 999999999999999999999999999999999999999999999998888877 7776666 544332 576
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 045355 493 ELASGESYFRQGDLGRALKKFLAVEKHY 520 (900)
Q Consensus 493 ~~~lg~~y~r~g~~~~Alk~~~~v~~~~ 520 (900)
.+|.++..+|+...|...|+.....-
T Consensus 759 --~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 759 --YLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --HHHHHHHHccchHHHHHHHHHHHhhc
Confidence 78999999999999999998877653
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.78 E-value=2.3e-14 Score=156.32 Aligned_cols=432 Identities=18% Similarity=0.143 Sum_probs=297.3
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|..-.++-..|..+...|+-++|.......++.++.+...|+.+|.++....+|++|+.+|+.|+.++|+|...|..++.
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34445677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCH-----HHHHHHHHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK---PNHR-----MNWIGFAVSHHL 157 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~-----~~~~~la~~~~~ 157 (900)
+..++++|+.....-.+.++..|..-..|...+..+.-.|++..|....+...+.. |... ....-...++..
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887765 3222 344555677778
Q ss_pred cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC
Q 045355 158 NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG 237 (900)
Q Consensus 158 ~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g 237 (900)
.|.+++|++.+...+..+- +........+.++...|++++|...+...+..+|++...+..+-.++.+-.
T Consensus 198 ~g~~q~ale~L~~~e~~i~----------Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIV----------DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred cccHHHHHHHHHhhhhHHH----------HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 8999999987776665442 233556678999999999999999999999999999999998888886333
Q ss_pred CHHHHH-HHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHH-HHHHHHHHHHh-cCc-chhhhhchhhcccchH
Q 045355 238 RLEEAA-ELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDE-LDALYKSLAQQ-YTW-SSAVKRIPLDFLQGEK 313 (900)
Q Consensus 238 ~~~eA~-~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-A~~~~~~~~~~-~p~-~~~~~~l~l~~~~~~~ 313 (900)
+--++. ..|...-+..|..... ..+.... ....+... .-.++...++. .|. -..+..+.-.-....-
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsv--------l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECP-RRLPLSV--------LNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAF 338 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccc-hhccHHH--------hCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHH
Confidence 344444 5555555554443221 1111111 00111111 11222222222 010 0000000000000111
Q ss_pred HHHHHHHhHHhhhhc-----------CCChhh----hchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchh
Q 045355 314 FREAAFNYVRPLLTK-----------GVPSLF----SDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPST 378 (900)
Q Consensus 314 ~~~a~~~~~~~~l~~-----------~~p~~~----~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 378 (900)
.++-+..|...+-.. ..|.++ ..+..-|...+..+.++..++.. +...| +
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A---IdHTP------------T 403 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA---IDHTP------------T 403 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH---hccCc------------h
Confidence 111222222222111 123221 22334445566666666666655 32222 2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------Ch---h
Q 045355 379 LLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA------DR---Y 449 (900)
Q Consensus 379 ~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~------d~---~ 449 (900)
..-.|..-|+++.+.|++++|..+++++-+++-.+.-+-..-|.-..+.++.++|.+...+--.-..+ +- .
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH
Confidence 33367888999999999999999999999998766666667888888999999999888765443321 10 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 045355 450 VNSECVKRMLQADQVSLAEKTA 471 (900)
Q Consensus 450 l~~~~a~~~l~~g~~eeA~~~~ 471 (900)
....++..+.|.|++..|++-+
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHH
Confidence 2233455566777777777555
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=3e-17 Score=176.48 Aligned_cols=232 Identities=13% Similarity=0.042 Sum_probs=183.9
Q ss_pred hccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFP----EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
.++.+.++..+.++|...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4577889999999997444 336789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q 045355 98 KCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED 177 (900)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~ 177 (900)
..|+++++++|++..++..+|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+. +....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~---~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLK---QRYEK 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHH---HHHhh
Confidence 99999999999999999999999999999999999999999999998742222 223445688999995543 33332
Q ss_pred CCCCCcchhchhHHHHHHHHHHHHcCCHHH--HHHHHHH----HhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 178 DYPPDNERCEHGEMLLYKISLLEECGSFER--ALAEMHK----KESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 178 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--Al~~l~~----al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
.+++ .|. .+.+....|+... ++..+.+ ..+..|....+|+.+|.++...|++++|+.+|+++++
T Consensus 195 ~~~~---------~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKE---------QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCcc---------ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2111 111 2444445565533 3333332 2355667788999999999999999999999999999
Q ss_pred hCC-CCHHHHHHHHHHh
Q 045355 252 MNP-DNYSYYEGLQKCL 267 (900)
Q Consensus 252 ~~p-~~~~~~~~l~~~~ 267 (900)
.+| +..++...+....
T Consensus 265 ~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 265 NNVYNFVEHRYALLELA 281 (296)
T ss_pred hCCchHHHHHHHHHHHH
Confidence 997 6666666555544
No 59
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.77 E-value=8.6e-14 Score=157.71 Aligned_cols=412 Identities=14% Similarity=0.104 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 045355 58 RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQL 137 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (900)
+...|+..|-+++++++....+|..+|.+|+...+...|.+||++|.++++.+..++-..+..|....+++.|....-..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666664444
Q ss_pred HHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 138 LTLKPNH--RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 138 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
-+..|.. ...|..+|..|...++...|+ ..++.++..+ |....+|..+|.+|...|++..|++.|.++
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV---~~fQsALR~d-------PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAV---CEFQSALRTD-------PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHH---HHHHHHhcCC-------chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 4444432 234555666666666666666 4444455544 344456666666666666666666666666
Q ss_pred hhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhc
Q 045355 216 ESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQY 295 (900)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~ 295 (900)
..+.|.+....+..+.+....|.|.+|+..+...+...........+++.++-....+ ....|=..++..++++.++.+
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd-~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD-SAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHH
Confidence 6666666666666666666666666666666666655444444444444332100000 000111122222222222211
Q ss_pred Cc--------chhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhc------CCChHHHHHHHHHHHHHhh
Q 045355 296 TW--------SSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYD------QPGKADILEQLILELEHSI 361 (900)
Q Consensus 296 p~--------~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~------~~~~~~~~~~~l~~~~~~l 361 (900)
-. +...+.+. .++...+.. .....|.. ..+..+.. ...+.+.+--..+.+...+
T Consensus 702 ~~~l~h~~~~~~~~Wi~a---------sdac~~f~q--~e~~~vn~-h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVA---------SDACYIFSQ--EEPSIVNM-HYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHhhhhhHHHHHHH---------hHHHHHHHH--hcccchHH-HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 10 00000000 000000000 00001100 00000100 0001111111112222222
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 045355 362 GTTGKYPGREEKEPPSTLLWTLFFLAQHYDR--------RGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAA 433 (900)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~--------~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA 433 (900)
..... ...||++|.-|.+ +.+...|+.++.++++...++...|..+|.+ -..|++.-|
T Consensus 770 sl~~~-------------~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~a 835 (1238)
T KOG1127|consen 770 SLAIH-------------MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACA 835 (1238)
T ss_pred HHhhc-------------cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhh
Confidence 21100 1157888887766 3344689999999999999999999999998 566999999
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHH
Q 045355 434 ATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKK 512 (900)
Q Consensus 434 ~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~ 512 (900)
..+|-+.+.+.|.....+..++.+.+++.+++-|...+.+... ++.... .|. ..+.+-...|+.-+++..
T Consensus 836 QHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~-------~Wl--G~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 836 QHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLV-------QWL--GEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhH-------HHH--HHHHhHHHHHHHHHHHHH
Confidence 9999999999999998888888899999999999988877655 332111 132 223334456766677776
Q ss_pred HHH
Q 045355 513 FLA 515 (900)
Q Consensus 513 ~~~ 515 (900)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 654
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=1.7e-15 Score=170.13 Aligned_cols=269 Identities=10% Similarity=0.043 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMK-GLTLNCMDRKSEAYELVRLGVKNDIKSHVCW-HVYGLL 86 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~l-g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~-~~lg~~ 86 (900)
....+..|...+..|+|++|.+.+.+.-+. ++++..++.+ +.+....|+++.|..++.++.+.+|++.... ...+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345688899999999999999877775543 3345555555 5666999999999999999999999886443 445899
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI--------GFAVSHHLN 158 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~ 158 (900)
+...|++++|+..++++.+.+|+++.++..++.+|.+.|+|++|++.+.++.+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987766544222 111111111
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCC
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGR 238 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~ 238 (900)
.+.+.. ..+-+.+... .+..+.+...++..+...|+.++|...++++++..++ +......+.+ ..++
T Consensus 243 ~~~~~l----~~~w~~lp~~------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l--~~~~ 309 (398)
T PRK10747 243 QGSEGL----KRWWKNQSRK------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRL--KTNN 309 (398)
T ss_pred cCHHHH----HHHHHhCCHH------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhc--cCCC
Confidence 221222 2222222111 1456789999999999999999999999999995554 4444444443 4599
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 239 LEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 239 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
.++++...++.++.+|+++..+..+|.++ +..+++++|...|+.+.+..|++.
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~--------~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLL--------MKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999998 778999999999999987766544
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.75 E-value=4.4e-15 Score=165.00 Aligned_cols=433 Identities=13% Similarity=0.063 Sum_probs=314.0
Q ss_pred HHHHHHHHHH-HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCcHHHH-HHHH
Q 045355 9 DANLFKLIVK-SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKND--IKSHVCW-HVYG 84 (900)
Q Consensus 9 ~~~l~~~a~~-~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~-~~lg 84 (900)
+.++|..... +...|+|..+.+.|++++...-...+.|+.++.++...|.-..|+.+.+..+... |.+...+ ....
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4455554443 3466999999999999998877888999999999999999999999999999987 6665544 4445
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDP-----DNIEILRDLSLLQAQM-----------RDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
.|..+.|.+++++.+-.+++.... -.+.++..+|.+|..+ ....++++.++++++.+|+++.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 677889999999999999998431 1345677778777543 245678999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHH
Q 045355 149 IGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQ 228 (900)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~ 228 (900)
+.++.-|...++.+.|.... .+.+..++ .....+|..++.++...+++..|+...+.++...|+|......
T Consensus 482 f~lalq~A~~R~l~sAl~~~---~eaL~l~~------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYA---REALALNR------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHhcC------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 99999999999999999544 44555433 3456899999999999999999999999999999999888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--hcccccCCCCCCCcHHHHHHHHHHHHHhcC--cchh--hh
Q 045355 229 EVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKC--LGLYRDNGNYSSGEIDELDALYKSLAQQYT--WSSA--VK 302 (900)
Q Consensus 229 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~--~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~--~~ 302 (900)
...+-...|+.++|+..+...+..-..-+.+...++.. .++... .....++..++...+..+...-. .... ..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~-l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG-LHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc-cccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 88888899999999999998887644333332222221 111100 01223344555555544433211 0000 00
Q ss_pred hchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHH
Q 045355 303 RIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWT 382 (900)
Q Consensus 303 ~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a 382 (900)
.++..-...+.-.. .+. ....+...+.++...+..+.+...+.+..... ....|.
T Consensus 632 ~Lp~s~~~~~~~~~---~~~-------~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---------------~l~~~~ 686 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSL---WYL-------LQKLWLLAADLFLLSGNDDEARSCLLEASKID---------------PLSASV 686 (799)
T ss_pred ccCcccccCCCCch---HHH-------HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---------------hhhHHH
Confidence 01100000000000 000 00122233444444444444444444443222 122458
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCcCChhHHHHHHHHHHH
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAAT--LADEARCMDLADRYVNSECVKRMLQ 460 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~--~~~~al~ldp~d~~l~~~~a~~~l~ 460 (900)
|+..|..+...|+..+|.+.|..|+.++|+++.+...+|.++...|+..-|.. .+..++++||.++..|..++..+..
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888888 9999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc
Q 045355 461 ADQVSLAEKTAALFTK 476 (900)
Q Consensus 461 ~g~~eeA~~~~~~~~~ 476 (900)
.|+.++|.+.+.....
T Consensus 767 ~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQ 782 (799)
T ss_pred ccchHHHHHHHHHHHh
Confidence 9999999998866655
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=6.7e-16 Score=180.81 Aligned_cols=236 Identities=13% Similarity=0.016 Sum_probs=199.1
Q ss_pred CCCCHH--HHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---------cCHHHHHHHHHHHH
Q 045355 39 FPEHGE--TLSMKGLTLNCM---DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD---------REYREAIKCYRNAL 104 (900)
Q Consensus 39 ~p~~~~--~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~eAi~~~~~al 104 (900)
.|.+.+ .+++.|...... +.+++|+.+|+++++.+|++..+|..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445554 346667655443 4578999999999999999999999999887644 34899999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 105 RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
+++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+ ..+++++..+|
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi---~~~~~Al~l~P----- 403 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL---QTINECLKLDP----- 403 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHhcCC-----
Confidence 9999999999999999999999999999999999999999999999999999999999999 66666777664
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKKESKI-VDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGL 263 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 263 (900)
......+.++.++...|++++|+..+++++... |+.+.++..+|.++..+|++++|...+.++....|++..+...+
T Consensus 404 --~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 --TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred --CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 333455556667788999999999999998875 78888999999999999999999999999999999988888888
Q ss_pred HHHhcccccCCCCCCCcHHHHHHHHHHHHHh
Q 045355 264 QKCLGLYRDNGNYSSGEIDELDALYKSLAQQ 294 (900)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~ 294 (900)
+..+ ...| +++...++.+.+.
T Consensus 482 ~~~~--------~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 482 YAEY--------CQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHH--------hccH--HHHHHHHHHHHHH
Confidence 8776 3334 4677766665543
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=6.8e-16 Score=148.85 Aligned_cols=207 Identities=16% Similarity=0.134 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
...+..|..|++.|++..|.+.++++|+.+|++..+|..++.+|...|+.+.|.+.|++|++++|++.+++.++|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 90 DREYREAIKCYRNALRI--DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
+|+|++|...|++|+.. .|.....+.++|.|..++|+++.|...|+++++.+|+.+.....++..++..|+|..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999999999974 3556788999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHH
Q 045355 168 LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYK 226 (900)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~ 226 (900)
++.+..... -..+.+.....+-...|+-+.+-.+=.+.....|......
T Consensus 196 ~~~~~~~~~----------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG----------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc----------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 766655442 2235566666777777887777777667666777665543
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=1e-15 Score=164.61 Aligned_cols=222 Identities=13% Similarity=0.037 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+|..+|.++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|++++|+..|+++++.+|+++..... ..+....+++++|+..+.+.....+. ..|. .+.++...|+..++ ..+
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK--EQWG-WNIVEFYLGKISEE-TLM 218 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc--cccH-HHHHHHHccCCCHH-HHH
Confidence 9999999999999999999998742221 22345678899999999877654332 2233 45666677877654 244
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHcCC
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV-DKLAYKEQEVSLLVKIGR 238 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p-~~~~~~~~la~~~~~~g~ 238 (900)
..+.+.+...+. ..+...++|+++|.++...|++++|+.+|++++..+| +.+...+.+..+....++
T Consensus 219 ~~~~~~~~~~~~---l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 219 ERLKAGATDNTE---LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHhcCCCcHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 555544432211 1155678999999999999999999999999999996 777777766666555444
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.7e-13 Score=139.92 Aligned_cols=469 Identities=14% Similarity=0.112 Sum_probs=336.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q 045355 16 IVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYRE 95 (900)
Q Consensus 16 a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 95 (900)
|.--..++++..|.+.++++|..+..+...|...+.+-+.......|..++++|+.+-|.-...|+.+..+-..+|+...
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 33334578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 045355 96 AIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l 175 (900)
|.+.|++-+...|+ .++|......-.+-+..+.|...|++.+-..|+ ..+|+..+..-...|+...|..+++.....+
T Consensus 160 aRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999999999986 578888888888899999999999999988875 6779999999999999999996666555554
Q ss_pred ccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHcCCH---HHHH-----HH
Q 045355 176 EDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK--LAYKEQEVSLLVKIGRL---EEAA-----EL 245 (900)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~--~~~~~~la~~~~~~g~~---~eA~-----~~ 245 (900)
..+ .....++...+..-..+..++.|.-+|+-++...|.+ ...+......--+-|+. ++++ --
T Consensus 238 ~~d-------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 238 GDD-------EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred hhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 432 3444566667777788889999999999999998876 33444444444445553 3443 35
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch---hhhhchhhcc--------cchHH
Q 045355 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS---AVKRIPLDFL--------QGEKF 314 (900)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~l~l~~~--------~~~~~ 314 (900)
|+..+..||-|.+.|.....+. -+.|+.+...+.|++++...|... .+++.....+ ...+.
T Consensus 311 YE~~v~~np~nYDsWfdylrL~--------e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLE--------ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHH--------HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7888999999999999888776 457899999999999999887543 2222222221 23444
Q ss_pred HHHHHHhHHhh-hhcCCChhhhchhhhhc----CCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHH
Q 045355 315 REAAFNYVRPL-LTKGVPSLFSDLSPLYD----QPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQH 389 (900)
Q Consensus 315 ~~a~~~~~~~~-l~~~~p~~~~~L~~ly~----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~ 389 (900)
...-+.|...+ +-+..-.+|..+-.+|. ...+...+.+++... +..+ |.... .-..-.+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~c-----------PK~Kl--Fk~YIel 446 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKC-----------PKDKL--FKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccC-----------CchhH--HHHHHHH
Confidence 44444444433 22333344444443432 223333333333332 2222 22221 1122244
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh--hHHHHHHHHHHHcCChHHH
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR--YVNSECVKRMLQADQVSLA 467 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~--~l~~~~a~~~l~~g~~eeA 467 (900)
-.++++++....+|++-|+.+|.+..+|...|.+-..+|+.+.|...|+-|++-..-|. .++.....+-...|.+++|
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 55688999999999999999999999999999999999999999999999988755553 5555566667778889999
Q ss_pred HHHHHHhcc-cCCcCCChhhhhHHHHH---HHHHHHHHHcC-----------ChHHHHHHHHHHHHHhhhhhh
Q 045355 468 EKTAALFTK-DGDQHNNLHDMQCMWYE---LASGESYFRQG-----------DLGRALKKFLAVEKHYADITE 525 (900)
Q Consensus 468 ~~~~~~~~~-~~~~~~~l~~~q~~w~~---~~lg~~y~r~g-----------~~~~Alk~~~~v~~~~~~~~~ 525 (900)
..+...+.. ..... +|+. ++.+.+....| ....|.+.|..+...+.+..+
T Consensus 527 R~LYerlL~rt~h~k--------vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 527 RALYERLLDRTQHVK--------VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HHHHHHHHHhcccch--------HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 888766655 22211 3442 23333333444 567788888888877766543
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-15 Score=157.91 Aligned_cols=290 Identities=17% Similarity=0.064 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
......++..+|..++|.+|+..+..++...|+++..|...+.++...|++++|.-..++.++++|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34567888899999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK---PNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
..++..+|...|+. .+++ ....|+..+++.+... |....+-..-+.++...|++++|.
T Consensus 129 a~~~~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hhHHHHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 99998888877761 1111 1112222233322221 222233444566666666766666
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK------------LAYKEQEVSLL 233 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~------------~~~~~~la~~~ 233 (900)
. .-...++.+ +.+.++++..|.++...++.+.|+.++++++.++|+. ...+...|.-.
T Consensus 190 ~---ea~~ilkld-------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 190 S---EAIDILKLD-------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred H---HHHHHHhcc-------cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 3 333334433 3445666666777777777777777777777666654 34566778888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchH
Q 045355 234 VKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEK 313 (900)
Q Consensus 234 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~ 313 (900)
++.|++..|.+.|..+|.++|++....
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~n----------------------------------------------------- 286 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTN----------------------------------------------------- 286 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchh-----------------------------------------------------
Confidence 888888888888888888888752210
Q ss_pred HHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 045355 314 FREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRR 393 (900)
Q Consensus 314 ~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~ 393 (900)
...|+.+|.+..++
T Consensus 287 ------------------------------------------------------------------aklY~nra~v~~rL 300 (486)
T KOG0550|consen 287 ------------------------------------------------------------------AKLYGNRALVNIRL 300 (486)
T ss_pred ------------------------------------------------------------------HHHHHHhHhhhccc
Confidence 01467788888899
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 394 GQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 394 g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
|+..+|+..++.+++++|..+.+++..|.++..+++|++|++.|+++.++...
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999887544
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=158.90 Aligned_cols=243 Identities=13% Similarity=0.106 Sum_probs=225.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY 93 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 93 (900)
+.|.+|+..|-+.+|.+.++..|+..| +++++..++.+|.+..+...|+..|.+.+...|.+.......+.++..++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 567888899999999999999999776 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 94 REAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
++|++.|+.+++.+|.|.++.-.+|.-|+.-++.+-|+.+|++++++.-.+++.+.++|.+....++++-++ ..|++
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L---~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL---PSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 66666
Q ss_pred hhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 174 TLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
++.....+ ...+++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...
T Consensus 384 Alstat~~----~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 384 ALSTATQP----GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhhccCc----chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 66644322 35678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 045355 254 PDNYSYYEGLQ 264 (900)
Q Consensus 254 p~~~~~~~~l~ 264 (900)
|+-.+...+++
T Consensus 460 P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 460 PDMAEVTTNLQ 470 (478)
T ss_pred cccccccccee
Confidence 98877666554
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2e-15 Score=156.72 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 123 QMRDLTGFVETRQQLLTLK--PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
..|++++|+..+++++... |.....+..+|.++...|++++|... +.+++... +.....+..++.++.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~-------~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY---LTRALQID-------PQRPESLLELAELYY 180 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhC-------cCChHHHHHHHHHHH
Confidence 7777777777777776643 34455666677777777777777733 33344433 233456667777777
Q ss_pred HcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 201 ECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
..|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 181 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 77777777777777777666666666777777777777777777766665543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.9e-15 Score=150.67 Aligned_cols=327 Identities=12% Similarity=0.021 Sum_probs=258.4
Q ss_pred HHHhCCCCHHHH-HHHHHHHHhCCCHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 045355 35 ILKKFPEHGETL-SMKGLTLNCMDRKSE--AYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 35 ~l~~~p~~~~~~-~~lg~~~~~~g~~~e--A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~ 111 (900)
++...|..+..+ ..++......++... +..++-.-...-|++......+|.+++..|++.+|+..|+++.-++|.+.
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV 266 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh
Confidence 344555554433 334555555555544 44555555667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHH
Q 045355 112 EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEM 191 (900)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~ 191 (900)
...-..|.++.+.|+++.--..-..++........-|+.-+...+..+++..|+ ...++.+..+ +.+.++
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL---~~~eK~I~~~-------~r~~~a 336 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERAL---NFVEKCIDSE-------PRNHEA 336 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHH---HHHHHHhccC-------cccchH
Confidence 999999999999999999999999999998888888999999999999999998 5666777766 567789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHhccc
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ-KCLGLY 270 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-~~~~l~ 270 (900)
++..|.++...|+.++|+-.|+.+..+.|.+...|..+..+|+..|++.+|...-+.++..-|.+...+..+| .++.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~-- 414 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF-- 414 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec--
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998886 3331
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHH
Q 045355 271 RDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADIL 350 (900)
Q Consensus 271 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~ 350 (900)
.+..-.++|..++++.+...|...... ..++.+....++.+.+
T Consensus 415 -----~dp~~rEKAKkf~ek~L~~~P~Y~~AV--------------------------------~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 415 -----PDPRMREKAKKFAEKSLKINPIYTPAV--------------------------------NLIAELCQVEGPTKDI 457 (564)
T ss_pred -----cCchhHHHHHHHHHhhhccCCccHHHH--------------------------------HHHHHHHHhhCccchH
Confidence 334557899999999999998655322 1222233333444444
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 045355 351 EQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKH 426 (900)
Q Consensus 351 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~ 426 (900)
..+++.+. .. .++.. .+..||+++...+.+.+|+++|..|+.++|++-...-.+-++-+.
T Consensus 458 i~LLe~~L---~~-----------~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 458 IKLLEKHL---II-----------FPDVN--LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHHH---hh-----------ccccH--HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 44555542 21 11111 578899999999999999999999999999987766555444433
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=170.06 Aligned_cols=235 Identities=16% Similarity=0.119 Sum_probs=204.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.-|..|..+++.|+..+|.-+|+.+++.+|.|.++|..||.+....++-..|+..++++++++|++..++..||..|...
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHH-------HHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRD-------LSLLQAQMRDLTGFVETRQQLLTLKP--NHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~ 161 (900)
|.-.+|++++.+.++..|.....-.. ...-......+..-.+.|-.+....| .++++...||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999999887653221110 00001111223344566677777778 7889999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 241 (900)
+.|+ ++|+.++... |....+|..+|-.+....+..+|+..|++++++.|..+.+++++|..++.+|.|++
T Consensus 447 drai---Dcf~~AL~v~-------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 447 DRAV---DCFEAALQVK-------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHH---HHHHHHHhcC-------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 9999 7777788766 56668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 045355 242 AAELYRALLSMNPD 255 (900)
Q Consensus 242 A~~~~~~al~~~p~ 255 (900)
|..+|-.+|.+.+.
T Consensus 517 A~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 517 AVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988655
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=3.1e-15 Score=155.21 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
.....+..|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 88 RSDREYREAIKCYRNALRID--PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
...|++++|+..|++++... +.....+..+|.++...|++++|...+.+++...|++...+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999854 4567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI 219 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~ 219 (900)
..++.+... . +.....+...+.++...|+.++|..+.+.+....
T Consensus 190 ~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 190 AYLERYQQT---Y-------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHh---C-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 766665543 2 2334667788999999999999999888776543
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=151.74 Aligned_cols=262 Identities=14% Similarity=0.088 Sum_probs=231.7
Q ss_pred HHhhccHHHHHHHHHHHHHhC---CC--C--HHHH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 19 SYETKQYKKGLKAADAILKKF---PE--H--GETL---SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~---p~--~--~~~~---~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
+|...+...|-..+...++.. |. + ..-| ..+|.||+++|.+.+|...++.++...| .++.+..++.+|.
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ 267 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQ 267 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHH
Confidence 456678888887777766532 21 1 1122 4689999999999999999999999766 4677889999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
+..+...|+..|...++..|.+...+...+.++..++++++|+++|+.+++.+|.+.++.-.+|..|+-.++.+.|+
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al--- 344 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL--- 344 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--C-CHHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI--V-DKLAYKEQEVSLLVKIGRLEEAAEL 245 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~--p-~~~~~~~~la~~~~~~g~~~eA~~~ 245 (900)
..|++++... ...++.+.++|.+....++++-++..|++++... | ...++|+++|.+....|++.-|..+
T Consensus 345 ryYRRiLqmG-------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 345 RYYRRILQMG-------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred HHHHHHHHhc-------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 6677777655 3456899999999999999999999999998763 3 3578999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
|+-++..+|++.+++.+|+.+. ...|+++.|..++..+....|...
T Consensus 418 frlaL~~d~~h~ealnNLavL~--------~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLA--------ARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHH--------hhcCchHHHHHHHHHhhhhCcccc
Confidence 9999999999999999999887 678999999999999999888654
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=165.43 Aligned_cols=239 Identities=18% Similarity=0.107 Sum_probs=200.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..||..++++++++|+|..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
-.+|+.++.+-+...|....... +..-... -+...-..+.+.|..+....+. ...+++...+|.+|.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-----~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-----KIDPDVQSGLGVLYN 441 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-----CCChhHHhhhHHHHh
Confidence 99999999999988765432111 0000000 0111112233455555544432 134588999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCc
Q 045355 201 ECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGE 280 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~ 280 (900)
-.|+|++|+++|+.++...|++...|..+|-.+..-.+.++|+..|++++++.|....++++||.++ +..|.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~--------mNlG~ 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC--------MNLGA 513 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh--------hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 78899
Q ss_pred HHHHHHHHHHHHHhcCcchh
Q 045355 281 IDELDALYKSLAQQYTWSSA 300 (900)
Q Consensus 281 ~~~A~~~~~~~~~~~p~~~~ 300 (900)
+++|..+|-.++...+.+..
T Consensus 514 ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 99999999999888776443
No 74
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.2e-14 Score=155.70 Aligned_cols=234 Identities=13% Similarity=0.095 Sum_probs=202.9
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH--HHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD-RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY--REAI 97 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~eAi 97 (900)
..+.+++|+..+.++|+.+|++..+|..+|.++..+| ++++++..+++++..+|++..+|+..+.++...|+. ++++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3578999999999999999999999999999999999 689999999999999999999999999999998874 7889
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHH----HHHHHHHH
Q 045355 98 KCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN---SNGS----KAVEILEA 170 (900)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~----~A~~~l~~ 170 (900)
.++.++++.+|+|..+|..++.++...|+++++++.+.++++.+|.+..+|..++.+.... |.++ +++ ..
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el---~y 205 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL---KY 205 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH---HH
Confidence 9999999999999999999999999999999999999999999999999999999998776 3333 333 55
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC---------
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG--------- 237 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g--------- 237 (900)
..+++..+ |.+..+|.+++.++.. .++..+|+..+.+++...|.++.++..++++|....
T Consensus 206 ~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 206 TIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 55777766 5566799999999988 456678999999999999999999999999998643
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 238 ---------RLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 238 ---------~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
..++|..+|..+-+.+|=-..+|....
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 236788888888666776666665443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=1.4e-14 Score=139.82 Aligned_cols=209 Identities=14% Similarity=0.091 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|-+.|++|+.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 123 QMRDLTGFVETRQQLLTL--KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
.+|++++|...|++++.. .|.....|.++|.+..+.|+++.|. ..+.+++..+ |........++....
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~---~~l~raL~~d-------p~~~~~~l~~a~~~~ 184 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE---EYLKRALELD-------PQFPPALLELARLHY 184 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH---HHHHHHHHhC-------cCCChHHHHHHHHHH
Confidence 999999999999999973 4566788999999999999999999 6667777776 456678899999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 201 ECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYE 261 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 261 (900)
..|+|-.|..++++.....+-....+.....+-...|+-+.+..+=.++....|...++-.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 9999999999999998888777888888888999999999998888888888998877644
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.6e-12 Score=131.93 Aligned_cols=454 Identities=13% Similarity=0.045 Sum_probs=293.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH
Q 045355 16 IVKSYETKQYKKGLKAADAILKKFPEHG-ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 16 a~~~~~~g~~~~Al~~~~~~l~~~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 94 (900)
...+....+|..|+.+++-.+..+.+.. ..-.++|.|++++|+|++|...|+-+...+.-+...|..++.+++-.|.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 3456677889999998887765443332 566778899999999999999998888877667788899999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
+|...-.+ .|+++-..+.+-.+..+.|+-++-. .|..-++- ..+-...+|.+++..-.|++|+ +-|.+.
T Consensus 109 eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~-~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAI---dvYkrv 177 (557)
T KOG3785|consen 109 EAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRIL-TFHSSLQD---TLEDQLSLASVHYMRMHYQEAI---DVYKRV 177 (557)
T ss_pred HHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHH-HHHHHHhh---hHHHHHhHHHHHHHHHHHHHHH---HHHHHH
Confidence 98876655 4666666666666666666654433 33333332 2244567788888888888888 455556
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
+..+ ++...+-.+++.+|.++.-|+-+.+.+.-.+...|+++.+...++..++++=+-..|..-...+.....
T Consensus 178 L~dn-------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 178 LQDN-------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HhcC-------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 6544 566677778888899998888888888888888898888888888777765444444444444333221
Q ss_pred CC-HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChh
Q 045355 255 DN-YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSL 333 (900)
Q Consensus 255 ~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~ 333 (900)
.. +..-..+-.-+-+ -..-+.|++++-.+....|... ..+.+.++.+++..+|..... -+.+..|.-
T Consensus 251 ~~~~f~~~l~rHNLVv--------FrngEgALqVLP~L~~~IPEAR--lNL~iYyL~q~dVqeA~~L~K--dl~PttP~E 318 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVV--------FRNGEGALQVLPSLMKHIPEAR--LNLIIYYLNQNDVQEAISLCK--DLDPTTPYE 318 (557)
T ss_pred ccchhHHHHHHcCeEE--------EeCCccHHHhchHHHhhChHhh--hhheeeecccccHHHHHHHHh--hcCCCChHH
Confidence 11 1111111111100 1122456666666655555432 445666777777777655221 123333422
Q ss_pred hhchhhhh-------cCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 045355 334 FSDLSPLY-------DQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 334 ~~~L~~ly-------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~a 406 (900)
+..-+..+ .......++++.+...-.+...+.+.|+ .-.+|.+++-..++++-+.+++..
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG-------------RQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG-------------RQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc-------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 1122223333433333222222222222 234455566677899999999887
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh-hHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChh
Q 045355 407 IEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR-YVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLH 485 (900)
Q Consensus 407 l~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~-~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~ 485 (900)
-...-++....+++|..+...|++.+|.+.|-+.-..+-.|. ...+.+++.+.+++..+-|-++ +.+...+...
T Consensus 386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~-- 460 (557)
T KOG3785|consen 386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSER-- 460 (557)
T ss_pred HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhH--
Confidence 777778888999999999999999999999988877765555 6677889999999999998655 4442222221
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 045355 486 DMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYA 521 (900)
Q Consensus 486 ~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~ 521 (900)
+..+-..+...++.|++--|.|.|+.+...-+
T Consensus 461 ----fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 461 ----FSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 22334678888899999889999987776543
No 77
>PLN02789 farnesyltranstransferase
Probab=99.66 E-value=1.5e-14 Score=154.88 Aligned_cols=206 Identities=13% Similarity=0.120 Sum_probs=184.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCH--HH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR-EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDL--TG 129 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~ 129 (900)
+...++.++|+..+.+++.++|.+..+|+..|.++...| ++++++.++.+++..+|++..+|...+.++..+|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445678899999999999999999999999999999998 689999999999999999999999999999988874 78
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc---CCH-
Q 045355 130 FVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC---GSF- 205 (900)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~- 205 (900)
++..+.++++.+|.+..+|..++.++...|++++++ +.+.++++.+ +.+..+|..++.++... |.+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL---~~~~~~I~~d-------~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL---EYCHQLLEED-------VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHC-------CCchhHHHHHHHHHHhcccccccc
Confidence 899999999999999999999999999999999998 6677777776 45568999999888776 333
Q ss_pred ---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 045355 206 ---ERALAEMHKKESKIVDKLAYKEQEVSLLVK----IGRLEEAAELYRALLSMNPDNYSYYEGLQKCLG 268 (900)
Q Consensus 206 ---~~Al~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (900)
++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++..+|.++.++..|+.++.
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 578889999999999999999999999988 456788999999999999999999999988873
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6.8e-12 Score=132.00 Aligned_cols=460 Identities=12% Similarity=0.088 Sum_probs=334.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 30 KAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 30 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+.|+..++.+--+...|...|.--..++++..|...+++|+..+..+...|..++.+-+..+....|...+.+|+.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 45666677777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchh
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHG 189 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~ 189 (900)
-.+.|+....+-..+|+..+|.+.|++-+...|+ ..+|......-.+.+..+.|..+++.|.-+. | ..
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~H---P--------~v 207 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVH---P--------KV 207 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheec---c--------cH
Confidence 9999999999999999999999999999999996 5789999999999999999997776664332 1 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKIVDK---LAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN--YSYYEGLQ 264 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~ 264 (900)
..|+..+..-...|+..-|...|+++++...++ ..+....|..-..+..++.|..+|+-++..-|.+ ...+..+.
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 678889999999999999999999999875553 3455666777778889999999999999999988 34444443
Q ss_pred HHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhccc-chHHHHHHHHhHHhhhhcCCC---hhhhchhh-
Q 045355 265 KCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQ-GEKFREAAFNYVRPLLTKGVP---SLFSDLSP- 339 (900)
Q Consensus 265 ~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~-~~~~~~a~~~~~~~~l~~~~p---~~~~~L~~- 339 (900)
..-.-.++...+..-=..+..-.|+..+..+|-+-..+...+.+.. .|+.+...+.|.+++.+-+.. ..+.....
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 3321111100010111223334688888889966655444444443 345555555666665322111 00111111
Q ss_pred -----hhc--CCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 045355 340 -----LYD--QPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT 412 (900)
Q Consensus 340 -----ly~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~ 412 (900)
+|. ...+.+...++.... +..-|. ..-+..-+|...|+...++.+...|.+.+-.||...|.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~---l~lIPH--------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQAC---LDLIPH--------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH---HhhcCc--------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence 111 123333333333333 332111 12223335667788888999999999999999999997
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHH
Q 045355 413 VIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWY 492 (900)
Q Consensus 413 ~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~ 492 (900)
+- ++-..-.+-.++++++.....|++-++.+|.+-+.+.+.+.+-...|+.+.|..++.+....+. +-...-+|-
T Consensus 437 ~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpellwk 511 (677)
T KOG1915|consen 437 DK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPELLWK 511 (677)
T ss_pred hh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHHHHH
Confidence 53 4444556667889999999999999999999999999999999999999999999988876443 111122332
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 045355 493 ELASGESYFRQGDLGRALKKFLAVEKH 519 (900)
Q Consensus 493 ~~~lg~~y~r~g~~~~Alk~~~~v~~~ 519 (900)
..-+.-...|.++.|...|++++..
T Consensus 512 --aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 512 --AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred --HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 2334445678899999999877664
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.8e-13 Score=137.76 Aligned_cols=232 Identities=13% Similarity=0.084 Sum_probs=115.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS-----HVCWHVYGLLY 87 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~lg~~~ 87 (900)
|-.|..+.-..+.++|+..|-.+++.+|...++...+|..+.+.|..+.|+.+-+..+. .|+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555555555443332 2222 22344555555
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR-----MNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~ 162 (900)
...|-++.|...|....+...--..++..|..+|....+|++|++..+++.++.+... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 5555555555555555444333444555555555555555555555555555544332 22334444444444455
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHcCCHHH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK-LAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~e 241 (900)
.|. ..+.+++..+ +....+-+.+|++....|+|+.|++.++.+++.+|+. +.+...+..+|..+|+.++
T Consensus 198 ~A~---~~l~kAlqa~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 198 RAR---ELLKKALQAD-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHH---HHHHHHHhhC-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 444 4455555444 3333444555555555555555555555555555543 3344445555555555555
Q ss_pred HHHHHHHHHHhCCC
Q 045355 242 AAELYRALLSMNPD 255 (900)
Q Consensus 242 A~~~~~~al~~~p~ 255 (900)
.+..+.++.+.+++
T Consensus 268 ~~~fL~~~~~~~~g 281 (389)
T COG2956 268 GLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555554443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=1.6e-13 Score=153.06 Aligned_cols=247 Identities=17% Similarity=0.114 Sum_probs=202.9
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKK--------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--- 72 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--- 72 (900)
..|.........+..|..+|+|++|+..|+++++. .|.-......+|.+|..++++.+|+.+|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34556666677888899999999999999999997 5555556666999999999999999999999974
Q ss_pred -----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 045355 73 -----DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID--------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLT 139 (900)
Q Consensus 73 -----~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (900)
+|....++.+||.+|...|++.+|..++++|+++. |.-...+..++.++..++++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45556789999999999999999999999999773 22334588899999999999999999999987
Q ss_pred hC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHH
Q 045355 140 LK-----P---NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAE 211 (900)
Q Consensus 140 ~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~ 211 (900)
+. + .-.....++|.+|+.+|++++|.+.++.............. +.....+..+|..+.+.+++.+|...
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~--~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD--YGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC--hhhhHHHHHHHHHHHHhcccchHHHH
Confidence 53 2 33456889999999999999999766665555433222222 55567888999999999999999999
Q ss_pred HHHHhhh-------cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 212 MHKKESK-------IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 212 l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
|.++..+ .|+....+.++|.+|..+|++++|+++-..++..
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9888765 4667788999999999999999999999998853
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=9.5e-12 Score=126.33 Aligned_cols=408 Identities=15% Similarity=0.100 Sum_probs=287.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSH-VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFV 131 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 131 (900)
+....+|..|+.+++-.+..+.... .....+|.|++..|+|++|+..|..+...+.-+...+.+||.+++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3456788999999887776543322 344558999999999999999999998877778889999999999999999998
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHH
Q 045355 132 ETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAE 211 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~ 211 (900)
..-.+ .|..+--...+-.+.++.|+-++-.. |...+. +..+-.+.++.+....-.|++|++.
T Consensus 112 ~~~~k----a~k~pL~~RLlfhlahklndEk~~~~----fh~~Lq----------D~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 112 SIAEK----APKTPLCIRLLFHLAHKLNDEKRILT----FHSSLQ----------DTLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHhh----CCCChHHHHHHHHHHHHhCcHHHHHH----HHHHHh----------hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 76554 57777666666666777788766553 333332 1225566788888888899999999
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh-cccccCCCCCCCc--HHHHHHHH
Q 045355 212 MHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCL-GLYRDNGNYSSGE--IDELDALY 288 (900)
Q Consensus 212 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~-~l~~~~~~~~~~~--~~~A~~~~ 288 (900)
|.+++..+|+.......+|.+|.++.-++-+.+.+.--+...|+++-+....+..+ .+. .|+ .++-.++.
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~-------ngr~ae~E~k~la 246 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI-------NGRTAEDEKKELA 246 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh-------ccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776655432 222 222 23334444
Q ss_pred HHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCC
Q 045355 289 KSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYP 368 (900)
Q Consensus 289 ~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~ 368 (900)
+.+-+.+|....+.+--+....+++ .|+. .-+-+-+.+|....+|...|...++...+..+...+ .|.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngE--gALq--VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl------~Pt-- 314 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGE--GALQ--VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL------DPT-- 314 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCc--cHHH--hchHHHhhChHhhhhheeeecccccHHHHHHHHhhc------CCC--
Confidence 4444445544444333333333222 1111 112244568888899999998988876666665544 111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH---HHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 369 GREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEA---IEHTP------TVIDLYSVKSRILKHAGDLAAAATLADE 439 (900)
Q Consensus 369 ~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~a---l~~~P------~~~~~~~~la~i~~~~G~~~eA~~~~~~ 439 (900)
.|. -|...|.++...|+--...+.+.-| +.+-. +.+.....+|..+.-..++++-+.++..
T Consensus 315 ------tP~----EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 315 ------TPY----EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred ------ChH----HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 3566777777777654444443332 22211 3344566778888888899999999999
Q ss_pred HHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 045355 440 ARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFL 514 (900)
Q Consensus 440 al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~ 514 (900)
..+.-.+|...+...+...+..|++.+|++++....... ..+ - .-|...++++|.+.|+...|..+|-
T Consensus 385 i~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~-ikn-~-----~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 385 IESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE-IKN-K-----ILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh-hhh-h-----HHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999988888778888888888999999998876554311 111 1 1134568999999999999999983
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=9.3e-13 Score=132.72 Aligned_cols=239 Identities=17% Similarity=0.097 Sum_probs=209.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-----IEILRDLSLLQ 121 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~la~~~ 121 (900)
+..|.-+.-.++.++|+..|-.+++.+|...++...+|.+|++.|..+.||..-+..++ .|+. .-++..||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 56788888899999999999999999999999999999999999999999998876654 5653 34688899999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE 201 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 201 (900)
+..|-++.|...|..+.....--..+...+..+|....+|++|+++-+.+.+ ..+.+.. .+....+..++..+..
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k---~~~q~~~--~eIAqfyCELAq~~~~ 192 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK---LGGQTYR--VEIAQFYCELAQQALA 192 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---cCCccch--hHHHHHHHHHHHHHhh
Confidence 9999999999999998876555667888999999999999999966555444 3343333 6778889999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHhcccccCCCCCCCc
Q 045355 202 CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY-SYYEGLQKCLGLYRDNGNYSSGE 280 (900)
Q Consensus 202 ~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~l~~~~~~~~~~~ 280 (900)
..+.+.|+..+.++++.+|.+..+-..+|+++...|+|+.|++.++.+++.||+.. .....|..|| ...|+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y--------~~lg~ 264 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY--------AQLGK 264 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH--------HHhCC
Confidence 99999999999999999999999999999999999999999999999999999884 5677788888 56899
Q ss_pred HHHHHHHHHHHHHhcCcch
Q 045355 281 IDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 281 ~~~A~~~~~~~~~~~p~~~ 299 (900)
.++....+.++.+.++...
T Consensus 265 ~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 265 PAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHHHHHHHHccCCcc
Confidence 9999999999999988766
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-13 Score=143.04 Aligned_cols=293 Identities=14% Similarity=0.045 Sum_probs=179.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
...|..++...+|.+|+..+..|+...|++...|...+.+++..|+|++|.-..++.++++|.....+...+.++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34444555555566666666666666666666666666666666666666666666666666655555556666655555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
..+|.+.++ +..++ .+...|..+.+.+..... .|....+.+..+.++...|+++
T Consensus 133 ~i~A~~~~~--------~~~~~--------------~~anal~~~~~~~~s~s~----~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 133 LIEAEEKLK--------SKQAY--------------KAANALPTLEKLAPSHSR----EPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred HHHHHHHhh--------hhhhh--------------HHhhhhhhhhcccccccC----CchhhHHHHhhhhhhhhcccch
Confidence 555555444 00000 112222333333322110 1223344444555555555555
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHH
Q 045355 207 RALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDA 286 (900)
Q Consensus 207 ~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~ 286 (900)
+|...--..+++++.+..+++..|.++...++.+.|+..|++++.++|+....-...-.+
T Consensus 187 ~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~-------------------- 246 (486)
T KOG0550|consen 187 EAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP-------------------- 246 (486)
T ss_pred hHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH--------------------
Confidence 555555555555555555555555555555555555555555555555443221110000
Q ss_pred HHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCC
Q 045355 287 LYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGK 366 (900)
Q Consensus 287 ~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~ 366 (900)
. .++
T Consensus 247 ----------------------------------------------------------k--------------~le---- 250 (486)
T KOG0550|consen 247 ----------------------------------------------------------K--------------KLE---- 250 (486)
T ss_pred ----------------------------------------------------------H--------------HHH----
Confidence 0 000
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 367 YPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT----VIDLYSVKSRILKHAGDLAAAATLADEARC 442 (900)
Q Consensus 367 ~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~----~~~~~~~la~i~~~~G~~~eA~~~~~~al~ 442 (900)
.+-..|.-.++.|+|..|.+.|..+|.++|. ++.+|.++|.+..++|+..+|+...+.+++
T Consensus 251 ---------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 251 ---------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred ---------------HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 2345566677899999999999999999995 566899999999999999999999999999
Q ss_pred cCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 443 MDLADRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 443 ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
+||.-.-.....+..++-.+++++|.+-+....+
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998765566667778888999999988866655
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=1.7e-12 Score=144.75 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCC---------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAIEHTP---------TVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al~~~P---------~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
...+.++...|+.+.|...++......- ..+.+....|.++...|++++|.+.+..++.+
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567777889999999999988765332 24667788899999999999999999999875
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=2.9e-12 Score=142.86 Aligned_cols=325 Identities=18% Similarity=0.072 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
+|+.+.+|..+|.++...|+++++...+.++....|.+ .......+.++...|++++|...+++++...|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 45555566666666666666666555555555554433 233444555566666666666666666666666655544
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHH
Q 045355 150 GFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQE 229 (900)
Q Consensus 150 ~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~l 229 (900)
. +..+...|++..+.. ...+.+.. ..+.. +.....+..+|.++...|++++|+..+++++...|++..++..+
T Consensus 82 ~-~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 82 L-HLGAFGLGDFSGMRD---HVARVLPL-WAPEN--PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred H-hHHHHHhcccccCch---hHHHHHhc-cCcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3 333333333322221 11111111 00111 34445666677777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcc
Q 045355 230 VSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFL 309 (900)
Q Consensus 230 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~ 309 (900)
|.++...|++++|+..+++++...|.++...
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~------------------------------------------------- 185 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLR------------------------------------------------- 185 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchh-------------------------------------------------
Confidence 7777777777777777777776655321100
Q ss_pred cchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHH
Q 045355 310 QGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQH 389 (900)
Q Consensus 310 ~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~ 389 (900)
...+..+|.+
T Consensus 186 ----------------------------------------------------------------------~~~~~~la~~ 195 (355)
T cd05804 186 ----------------------------------------------------------------------GHNWWHLALF 195 (355)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0034456666
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCC--chHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhcCcC--ChhHHHHHHHHHH
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPT--VIDLYS---VKSRILKHAGDLAAAATL--A-DEARCMDLA--DRYVNSECVKRML 459 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~--~~~~~~---~la~i~~~~G~~~eA~~~--~-~~al~ldp~--d~~l~~~~a~~~l 459 (900)
+...|++++|+..|++++...|. ...... .+...+...|....+..+ + .......+. ..+.....+..+.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 77777777777777777655541 111110 222233334433333332 1 111111111 1133334566667
Q ss_pred HcCChHHHHHHHHHhcccCCcCC-ChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 045355 460 QADQVSLAEKTAALFTKDGDQHN-NLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADI 523 (900)
Q Consensus 460 ~~g~~eeA~~~~~~~~~~~~~~~-~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~ 523 (900)
..|+.++|...+........... .-.....+......+.++++.|+++.|+..+..+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ 340 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARI 340 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 77888888877755444111100 00111223345678999999999999999999988776444
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.60 E-value=1.6e-13 Score=153.12 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=205.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC---
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID--- 107 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~--- 107 (900)
.|.-..+...++..|...|+++.|+..++.+++. .|.-......+|.+|..+++|.+|+..|++|+.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666778888999999999999999999999997 55555566779999999999999999999999762
Q ss_pred --CC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 108 --PD---NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK--------PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 108 --p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
++ -..++.+||.+|...|++++|..++++++.+. |.-...+..++.++...+++++|..++....+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 33 44569999999999999999999999998863 233456778899999999999999888877776
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------CCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI--------VDKLAYKEQEVSLLVKIGRLEEAAELY 246 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~ 246 (900)
+...+...+ +.....+.++|.+|..+|++++|.+.+++++.+. +.....+..+|..+.+.+++.+|...|
T Consensus 355 ~~~~~g~~~--~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 355 YLDAPGEDN--VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHhhccccc--hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 664444444 5677899999999999999999999999998763 334567888999999999999999999
Q ss_pred HHHHHhC-------CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 247 RALLSMN-------PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 247 ~~al~~~-------p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
.+++.+. |+-...+.+|+.+| -..|+++.|.++-+.+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y--------~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALY--------RAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHH--------HHcccHHHHHHHHHHHHH
Confidence 9988763 44456788888888 568999999999888764
No 87
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.57 E-value=3.3e-09 Score=120.72 Aligned_cols=536 Identities=18% Similarity=0.155 Sum_probs=342.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
.++-+......+++++|++.+.+.++++|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 35666777889999999999999999999999999999999999999999998887776677788888999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHH-HH-
Q 045355 92 EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMN-WIGFAVSHHLNSNGSKAVE-IL- 168 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~-~l- 168 (900)
++++|..+|++++..+|+ ...+..+-.+|.+.++|.+-.+.--++.+..|..+.. |..+..+.......++... ++
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999999999999 8889999999999999998888888888888988754 4444444444444433332 10
Q ss_pred ----HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHH-Hhh-hcCCHHHHHHHHHHHHHHcCCHHHH
Q 045355 169 ----EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHK-KES-KIVDKLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 169 ----~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~-al~-~~p~~~~~~~~la~~~~~~g~~~eA 242 (900)
..+.+.++.. .. .+...-....-.++..+|++++|++.+.. ..+ ..+.+...-......+..++++.+-
T Consensus 171 ~LA~~m~~~~l~~~-gk----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKK-GK----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHHhccC-Cc----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1223334333 11 22223333445677889999999999943 333 3445555666778899999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHH-HHHHhccc----ccCCCCCCCcHHHHHHHHHHHHHhcCcchhh--hhchhhcccchHHH
Q 045355 243 AELYRALLSMNPDNYSYYEG-LQKCLGLY----RDNGNYSSGEIDELDALYKSLAQQYTWSSAV--KRIPLDFLQGEKFR 315 (900)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~-l~~~~~l~----~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~l~l~~~~~~~~~ 315 (900)
.+...+++..++++...+.. .-.++... .+...-..+..+...+..++......+.+.. ..+...+...++++
T Consensus 246 ~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 246 FELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH
Confidence 99999999999998333222 22222111 0000011222333333333333332333322 12222233567778
Q ss_pred HHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q 045355 316 EAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQ 395 (900)
Q Consensus 316 ~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~ 395 (900)
+....|.+..-.+. -.+.++... ...-..+....++..+. .. +.........+|.+...-++....|.
T Consensus 326 e~~~~y~~kfg~kp--cc~~Dl~~y-l~~l~~~q~~~l~~~l~---~~------~~~~s~~~k~l~~h~c~l~~~rl~G~ 393 (932)
T KOG2053|consen 326 EMLSYYFKKFGDKP--CCAIDLNHY-LGHLNIDQLKSLMSKLV---LA------DDDSSGDEKVLQQHLCVLLLLRLLGL 393 (932)
T ss_pred HHHHHHHHHhCCCc--HhHhhHHHh-hccCCHHHHHHHHHHhh---cc------CCcchhhHHHHHHHHHHHHHHHHhhc
Confidence 88887777663332 222222211 11112222223333331 10 00111223334433333333334443
Q ss_pred H-----HHHHHHHHHH-------HHc----CCC---chHHHHHH-----HHHHHHcCC---HHHHHHHHHHHHhcCcCCh
Q 045355 396 Y-----DVALSKIDEA-------IEH----TPT---VIDLYSVK-----SRILKHAGD---LAAAATLADEARCMDLADR 448 (900)
Q Consensus 396 ~-----~~Al~~~~~a-------l~~----~P~---~~~~~~~l-----a~i~~~~G~---~~eA~~~~~~al~ldp~d~ 448 (900)
| +.=..++.+. ++. .|+ ..+.+..+ -..+.+.++ +-+|+-.++..+..+|.|.
T Consensus 394 ~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf 473 (932)
T KOG2053|consen 394 YEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNF 473 (932)
T ss_pred cccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccH
Confidence 2 2222233222 222 121 22333333 244555554 5689999999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhccc---CCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhh
Q 045355 449 YVNSECVKRMLQADQVSLAEKTAALFTKD---GDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITE 525 (900)
Q Consensus 449 ~l~~~~a~~~l~~g~~eeA~~~~~~~~~~---~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~ 525 (900)
.....+...|.--|-+..|.++..-..-. .+..+. .+-..+.-.|++..|...|+...+.|.....
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-----------~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~k 542 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-----------LIFRRAETSGRSSFASNTFNEHLKFYDSSLK 542 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-----------HHHHHHHhcccchhHHHHHHHHHHHHhhhhh
Confidence 76666666666668888888776543221 222221 2223444568999999999999999999888
Q ss_pred hhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcC
Q 045355 526 DQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDS 576 (900)
Q Consensus 526 dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l~d~ 576 (900)
+..+.-.-+.|.++...-.+|+.+-+++...-.|..+-.....+-+....+
T Consensus 543 E~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 543 ETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred hhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888899999999999999999988877777766666554444443
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=1.2e-12 Score=136.55 Aligned_cols=190 Identities=16% Similarity=0.065 Sum_probs=150.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH---
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIE--- 112 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~--- 112 (900)
++..++.++.+|..+...|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445677888888888888888888888888888888765 46788888888888888888888888888887665
Q ss_pred HHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 113 ILRDLSLLQAQM--------RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 113 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
+++.+|.++... |++++|+..+++++..+|++...+..+..+... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~--------------~~~---------- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL--------------RNR---------- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH--------------HHH----------
Confidence 578888888776 889999999999999999887665433222110 000
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD---KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 255 (900)
.......+|.++...|++.+|+..+++++...|+ .+.++..+|.++..+|++++|..+++.+....|+
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 0123456788899999999999999999998665 5689999999999999999999999888877664
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.5e-11 Score=128.01 Aligned_cols=207 Identities=17% Similarity=0.125 Sum_probs=150.4
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWH 81 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 81 (900)
.|....++....+++.+.++|++|++. +++++.+ ....+.++.|.+++++.++|+..++ ..++.+....+
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 356667788888999999999999844 4445531 1222789999999999999999998 44566677889
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN-HRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 160 (900)
..|.+++++|+|++|++.|+..++.+.++.+..+....+-....- . .. ..+.....|. ..+..++.|.++...|+
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--~-~~-~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--Q-VQ-LLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh--h-HH-HHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 999999999999999999999999888776665544433222110 0 11 2333344444 56789999999999999
Q ss_pred HHHHHHHHHHHHh----hhccCCCC-CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH
Q 045355 161 GSKAVEILEAYEG----TLEDDYPP-DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK 222 (900)
Q Consensus 161 ~~~A~~~l~~~~~----~l~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~ 222 (900)
|.+|++.|+...+ .+..+... +....+...+...++.++..+|+.++|...|...+..+|-+
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 9999988887632 23222111 11122344567788999999999999999999998876644
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=2.3e-13 Score=129.37 Aligned_cols=127 Identities=16% Similarity=-0.010 Sum_probs=119.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 29 LKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 29 l~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
...++++++.+|++ ++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+.+|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45789999999885 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN 158 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (900)
+++.+++.+|.++..+|++++|+..|++++...|+++..|..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888776543
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=3.4e-12 Score=133.25 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH---HH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG---ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV---CW 80 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~ 80 (900)
.....++..|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456889999999999999999999999999999876 58899999999999999999999999999998776 68
Q ss_pred HHHHHHHHhc--------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 81 HVYGLLYRSD--------REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 81 ~~lg~~~~~~--------g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
+.+|.++... |++++|+..|++++..+|++..++..+..+....+.. ......+|
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL-----------------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 9999999876 8999999999999999999876654443322211110 12234677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 045355 153 VSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV 220 (900)
Q Consensus 153 ~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p 220 (900)
..+...|++.+|+.. +.+++...|. . +...++++.+|.++...|++++|..+++.+....|
T Consensus 174 ~~~~~~g~~~~A~~~---~~~al~~~p~--~--~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGAYVAAINR---FETVVENYPD--T--PATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCChHHHHHH---HHHHHHHCCC--C--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 778888888888844 4444443321 1 45567888888888888888888888777665554
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=4.8e-11 Score=135.18 Aligned_cols=270 Identities=15% Similarity=0.111 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++-.+..+.+.|++++|++.++.....-++....+-.+|.++..+|++++|...|...+..+|++...+..+..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 45566777888999999999999998888999999999999999999999999999999999999999998888887333
Q ss_pred -----cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 91 -----REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET-RQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 91 -----g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
.+.+.-...|+......|....+. .+...+..-..|...... +...+ .-+.|.....+-..|....+..-.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l--~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQL--RKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHcChhHHHHH
Confidence 356777888888888887654432 222222222334433333 33333 335566666666666655555555
Q ss_pred HHHHHHHHhhhccCCCCCc------chh-chhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC
Q 045355 165 VEILEAYEGTLEDDYPPDN------ERC-EHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG 237 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~------~~~-~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g 237 (900)
..++..+...+........ ..| ....+++++++.|...|++++|++++++++...|..++.+...|.++-..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 5556666555443211110 011 123567889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHH
Q 045355 238 RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSL 291 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 291 (900)
++.+|...++.+-.+++.+...-...+..+ +..|++++|...+...
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~--------LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYL--------LRAGRIEEAEKTASLF 288 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHH--------HHCCCHHHHHHHHHhh
Confidence 999999999999999998876666666555 5577888887776544
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.5e-10 Score=119.18 Aligned_cols=297 Identities=15% Similarity=0.086 Sum_probs=218.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhc
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD-NIEILRDLSLLQAQMR 125 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~la~~~~~~g 125 (900)
..-|..-..-|+|.+|.....++-+..+....++..-+..-.+.|+++.|-.++.++-+..++ ...+...++.++...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 345666677899999999999988887777778888888999999999999999999988444 4567888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchh--HHHHHHHHHHHHcC
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHG--EMLLYKISLLEECG 203 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~la~~~~~~g 203 (900)
|++.|.....+++...|.++........+|...|++.+...++..+.+.--... ++.. +-.-..| ++.+.+
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~------~e~~~le~~a~~g-lL~q~~ 240 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD------EEAARLEQQAWEG-LLQQAR 240 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh------HHHHHHHHHHHHH-HHHHHh
Confidence 999999999999999999999999999999999999999988888776543321 1111 1111111 111222
Q ss_pred CHHHH---HHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCc
Q 045355 204 SFERA---LAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGE 280 (900)
Q Consensus 204 ~~~~A---l~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~ 280 (900)
+-..+ ..+.+..-..-..++.+...++.-+..+|+.++|.++.+.+++..-+.. ...+.-+ ...++
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~---------l~~~d 309 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPR---------LRPGD 309 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhh---------cCCCC
Confidence 22222 2233333333334577778888899999999999999999998765543 2222222 12344
Q ss_pred HHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHh
Q 045355 281 IDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHS 360 (900)
Q Consensus 281 ~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~ 360 (900)
...-++..++.++.+|+++
T Consensus 310 ~~~l~k~~e~~l~~h~~~p------------------------------------------------------------- 328 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDP------------------------------------------------------------- 328 (400)
T ss_pred chHHHHHHHHHHHhCCCCh-------------------------------------------------------------
Confidence 4444444444433333222
Q ss_pred hcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 361 IGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEA 440 (900)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~a 440 (900)
. .++.||+.+.+.+.|.+|..+|+.+++..|. ..-+..+|.++...|+..+|.++++++
T Consensus 329 --------~------------L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 --------L------------LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred --------h------------HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 6789999999999999999999999998864 566889999999999999999999999
Q ss_pred Hhc
Q 045355 441 RCM 443 (900)
Q Consensus 441 l~l 443 (900)
+.+
T Consensus 388 L~~ 390 (400)
T COG3071 388 LLL 390 (400)
T ss_pred HHH
Confidence 854
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=1.4e-08 Score=111.40 Aligned_cols=341 Identities=15% Similarity=0.169 Sum_probs=202.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc-CCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 045355 140 LKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED-DYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK 218 (900)
Q Consensus 140 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~ 218 (900)
.+|++...|.....++ .|+..+-+ ..|..++.. +|.... .....+|...|..|...|+.+.|...++++.+.
T Consensus 344 Qn~~nV~eW~kRV~l~--e~~~~~~i---~tyteAv~~vdP~ka~--Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLY--EGNAAEQI---NTYTEAVKTVDPKKAV--GSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred cCCccHHHHHhhhhhh--cCChHHHH---HHHHHHHHccCcccCC--CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 3456666665554333 45555555 344444332 222211 234578999999999999999999999999876
Q ss_pred cC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHhcccccCCC
Q 045355 219 IV----DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY-------------------SYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 219 ~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------------------~~~~~l~~~~~l~~~~~~ 275 (900)
.- +-..+|...|..-++..+++.|..+.+.+...- .++ ..|..++...
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle-------- 487 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNSEPVQARLHRSLKIWSMYADLE-------- 487 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH--------
Confidence 32 346789999999999999999999999988652 221 1222222221
Q ss_pred CCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHH
Q 045355 276 YSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLI 354 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l 354 (900)
-..|-++....+|++++...--.+.+ .+.++-+-+...|.++...|
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y--------------------------------- 534 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY--------------------------------- 534 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH---------------------------------
Confidence 12345555566666665543333322 22222222333444444444
Q ss_pred HHHHHhhcccCCCCCCCCCCCchhHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHH
Q 045355 355 LELEHSIGTTGKYPGREEKEPPSTLLWTLFF-LAQHYDRRGQYDVALSKIDEAIEHTP--TVIDLYSVKSRILKHAGDLA 431 (900)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~-la~~y~~~g~~~~Al~~~~~al~~~P--~~~~~~~~la~i~~~~G~~~ 431 (900)
.+.+.. .+-|....+|..|+ ....-+.....+.|..+|++|++..| ..-.+|+..|..-..-|-..
T Consensus 535 ---ErgI~L--------Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 535 ---ERGISL--------FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred ---HcCCcc--------CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 333321 12223334453222 22223335578999999999999988 23457888888888899999
Q ss_pred HHHHHHHHHHhc-CcCCh-hHHHHHH-HHHHHcC------ChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHH
Q 045355 432 AAATLADEARCM-DLADR-YVNSECV-KRMLQAD------QVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFR 502 (900)
Q Consensus 432 eA~~~~~~al~l-dp~d~-~l~~~~a-~~~l~~g------~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r 502 (900)
.|+..|++|-.. .+.++ .+.+.+. +...--| =+++|++.+ +....-+ +-+..++.-..
T Consensus 604 ~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--------p~~~~r~-----mclrFAdlEtk 670 (835)
T KOG2047|consen 604 HAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--------PDSKARE-----MCLRFADLETK 670 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--------ChHHHHH-----HHHHHHHHhhh
Confidence 999999998654 55555 2222221 1111111 233333321 1111111 22366777788
Q ss_pred cCChHHHHHHHHHHHHHhhhhhhhhh--hhHHHhhhhccHHHHHHHHHhhhhh
Q 045355 503 QGDLGRALKKFLAVEKHYADITEDQF--DFHSYCLRKMTLRAYVEMLKFQDRL 553 (900)
Q Consensus 503 ~g~~~~Alk~~~~v~~~~~~~~~dq~--df~~y~~rk~~~~~y~~~l~~~d~l 553 (900)
.|..+.|...|.-..+..+--....| .++.|-+|.|.-.+|-+|||.-..+
T Consensus 671 lGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsv 723 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSV 723 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999888665554433322222 3567889999999999999976554
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=9.2e-11 Score=116.75 Aligned_cols=394 Identities=13% Similarity=0.048 Sum_probs=257.2
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREA 96 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 96 (900)
..+....+|..|++++..-.+.+|.+-..+..+|.||+...++.+|..+|++.-.+.|.........+..++..+.+..|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 34567889999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 045355 97 IKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLE 176 (900)
Q Consensus 97 i~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~ 176 (900)
+.........+.-....+..-+.+..+.+|+..+....++.-. .+.....++.|.+.++.|++++|+ +.|..++.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAv---qkFqaAlq 172 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAV---QKFQAALQ 172 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHH---HHHHHHHh
Confidence 9988776543211233444556667777888887766554321 145677888899999999999998 66666665
Q ss_pred cCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----cCC-------------------------HHHHHH
Q 045355 177 DDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK----IVD-------------------------KLAYKE 227 (900)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~----~p~-------------------------~~~~~~ 227 (900)
.. --.+.+-++++.+..+.|++..|+++..++++. .|. -..++.
T Consensus 173 vs-------GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 173 VS-------GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred hc-------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 43 223467778899999999999999888777653 221 134566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch-hhhhc
Q 045355 228 QEVSLLVKIGRLEEAAELYRALLSMNPD--NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS-AVKRI 304 (900)
Q Consensus 228 ~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~l 304 (900)
..+.++++.|+++.|.+.+..+--++.. ++..+.+++..- ..+++.....-+.-++...|-.. ..-.+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n---------~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN---------MDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc---------ccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 7788899999999988776544322211 234444444332 24556666666777777777333 44566
Q ss_pred hhhcccchHHHHHHHHhHHhh-h--hcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHH
Q 045355 305 PLDFLQGEKFREAAFNYVRPL-L--TKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLW 381 (900)
Q Consensus 305 ~l~~~~~~~~~~a~~~~~~~~-l--~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 381 (900)
.+.+...+-|.-+.+...+.. + .--.+-.+..|..+...+...+...+-+......+... -...-
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~k------------LRklA 384 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEK------------LRKLA 384 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH------------HHHHH
Confidence 677777777877777554332 1 11133344444455444555444444443333222100 00000
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
+-......-........|++.|+.+++.. ....+..+++|....++..+.+.|....+.-..
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 00011111001111334555555555543 456677788888888888888888877766433
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=1.3e-11 Score=123.76 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=121.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 94 (900)
.+..|+..|++.......++.. +|.. -+...++.++++..+++++..+|++...|..+|.+|...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3445667788877544443221 2221 1113667788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQ-AQMRD--LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY 171 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 171 (900)
+|+.+|+++++++|++..++..+|.++ ...|+ +++|...++++++.+|++..+++.+|.++...|++++|+ ..+
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai---~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI---ELW 167 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH---HHH
Confidence 888888888888888888888888864 66676 488888888888888888888888888888888888888 555
Q ss_pred HhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 172 EGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
.+++...++..+ +....+ -+..+..+
T Consensus 168 ~~aL~l~~~~~~-r~~~i~-~i~~a~~~ 193 (198)
T PRK10370 168 QKVLDLNSPRVN-RTQLVE-SINMAKLL 193 (198)
T ss_pred HHHHhhCCCCcc-HHHHHH-HHHHHHHH
Confidence 556665555333 333332 34455444
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.38 E-value=1e-11 Score=118.09 Aligned_cols=114 Identities=10% Similarity=-0.000 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
..+..|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
|++++|+..|++++++.|+++..+..++.++...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887654
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=8.4e-11 Score=117.96 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=118.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HhccC--HHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY-RSDRE--YREAIK 98 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~eAi~ 98 (900)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++++|+++..+..+|.++ ...|+ +++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999974 77787 599999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 99 CYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
.++++++.+|++..++..+|..+...|++++|+..++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887654
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=1.3e-07 Score=103.79 Aligned_cols=482 Identities=11% Similarity=0.068 Sum_probs=310.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK--SHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
.--.+|++++..-.+-+..|......+..+|+...-...|.+++..-|- +...|-.+-......+-.+-++..|++-|
T Consensus 86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3334455555544455678888888899999999999999999987663 45577777777788888899999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q 045355 105 RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL-------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED 177 (900)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~ 177 (900)
+.+|... ......+...+++++|.+.+..++.. .+.+...|..+.....+.-+.-..+++=.-++..+..
T Consensus 166 k~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 166 KVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred hcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 9998764 34455677789999999999888753 3566678888888777765544444332223333332
Q ss_pred CCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---CHHHHH-----HHHHHHHHHcC------------
Q 045355 178 DYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV---DKLAYK-----EQEVSLLVKIG------------ 237 (900)
Q Consensus 178 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p---~~~~~~-----~~la~~~~~~g------------ 237 (900)
-+ -....+|..+|..|...|.+++|...|++++.... +...++ +.-..+-.+++
T Consensus 243 ft------Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 243 FT------DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred Cc------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 21 34567899999999999999999999999987532 211111 11111111111
Q ss_pred -CHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHh-cCcch----
Q 045355 238 -RLEEAAELYRAL------------LSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ-YTWSS---- 299 (900)
Q Consensus 238 -~~~eA~~~~~~a------------l~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~---- 299 (900)
+.+-....|+.+ +..||++..-|.....++ .|+..+-+..|.+++.. +|.-.
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~----------e~~~~~~i~tyteAv~~vdP~ka~Gs~ 386 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY----------EGNAAEQINTYTEAVKTVDPKKAVGSP 386 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh----------cCChHHHHHHHHHHHHccCcccCCCCh
Confidence 122333444444 345788888888887776 78889999999988765 44322
Q ss_pred --hhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCC------C
Q 045355 300 --AVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGR------E 371 (900)
Q Consensus 300 --~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~------~ 371 (900)
.+..++-.|-..++...+-..|.++.... -.....|+.+|..-+..+...+-++.....+......|.. .
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 22334444556777777766666655211 1223344444433332222222222222222211112211 1
Q ss_pred CCCCchhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Q 045355 372 EKEPPSTL----LWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLAD 447 (900)
Q Consensus 372 ~~~~~~~~----~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d 447 (900)
...++... +.+|...+......|-++.-...|++.|++.--.|....+.|..+....-+++|.+.|++.+.+-+-.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 12222211 11445667888889999999999999999988899999999999999999999999999999995443
Q ss_pred h---hHHHHHHHHHHHcC--ChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 045355 448 R---YVNSECVKRMLQAD--QVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYAD 522 (900)
Q Consensus 448 ~---~l~~~~a~~~l~~g--~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~ 522 (900)
- .-+.++.+..-|-| .++.|..++.......++.. |-.+.+..+..--+-|-...|++.|+++...-
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~------aKtiyLlYA~lEEe~GLar~amsiyerat~~v-- 616 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH------AKTIYLLYAKLEEEHGLARHAMSIYERATSAV-- 616 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--
Confidence 2 33344555544444 68999999888877433322 11123355666666788889999998866543
Q ss_pred hhhhhhhhHHHhhhh
Q 045355 523 ITEDQFDFHSYCLRK 537 (900)
Q Consensus 523 ~~~dq~df~~y~~rk 537 (900)
-.++++++.+-|+.|
T Consensus 617 ~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKK 631 (835)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345677777666655
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=8.4e-09 Score=107.93 Aligned_cols=270 Identities=9% Similarity=-0.016 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK-SHVCWHVYGLLY 87 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~ 87 (900)
.......|..-+..|+|.+|.+...+.-+..+.-.-++..-+.....+|+++.|-.++.++-+..++ ........+.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445667777888999999999999977666665566667778889999999999999999998433 344677889999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-H--HHHHHH--HHHHcCCHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM-N--WIGFAV--SHHLNSNGS 162 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~--~~~la~--~~~~~g~~~ 162 (900)
...|+++.|.....++++..|.++.++.....+|.+.|+|........++-+..--+.+ . +-..+. ++...++-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999888775432221 1 111111 122223333
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 242 (900)
.+..+...+.. +... ...++++...++.-+...|+.++|.+....+++..-+.. ....++ ...-+++..=
T Consensus 244 ~~~gL~~~W~~-~pr~------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l 313 (400)
T COG3071 244 GSEGLKTWWKN-QPRK------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPL 313 (400)
T ss_pred cchHHHHHHHh-ccHH------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHH
Confidence 33322233322 2111 023457788888999999999999999999998866644 222222 3466888889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcC
Q 045355 243 AELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYT 296 (900)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p 296 (900)
++..++.++..|+++..+..||.++ +..+.|.+|...|+.+++..|
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~--------~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLA--------LKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHH--------HHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998 667888888888887655443
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.33 E-value=6.6e-11 Score=117.44 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=152.9
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
.+|++......+..++..|+-+.++.+..+++..+|.+.+.+..+|...++.|++.+|+..++++....|+++.+|..+|
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 45555556788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.||++.|..++..+....+.+..+..+++.+....|++.+|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHH
Q 045355 165 VEIL 168 (900)
Q Consensus 165 ~~~l 168 (900)
..+.
T Consensus 222 ~~i~ 225 (257)
T COG5010 222 EDIA 225 (257)
T ss_pred Hhhc
Confidence 8543
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.4e-09 Score=106.81 Aligned_cols=185 Identities=16% Similarity=0.114 Sum_probs=161.1
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
.++....+-....+....|+.+-|..|+++.....|++..+...-|..+...|++++|+++|+..++-+|.+...+-...
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34444455556666778899999999999988888999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 045355 153 VSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSL 232 (900)
Q Consensus 153 ~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~ 232 (900)
.+...+|+.-+|++.+..|.+.+- ...++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~----------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFM----------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888999999988888887763 4459999999999999999999999999999999999999999999
Q ss_pred HHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 233 LVKIG---RLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 233 ~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
++-+| ++.-|.++|.++++++|.+...++++..|-
T Consensus 198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 198 LYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 98887 567899999999999999988888887664
No 103
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.2e-11 Score=122.98 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...+-.+|..+++.++|.+|+..|.++|+++|.++..|.+++-+|.++|.++.|++.++.++.+||....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 128 (900)
.+|++.+|+..|+++|.++|+|...+..|..+....+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888887776666666655554443
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4.7e-11 Score=112.74 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=113.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 30 KAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 30 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
..+++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
++..++.+|.++...|++++|+..++++++.+|++...+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999887643
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=2.4e-10 Score=113.55 Aligned_cols=184 Identities=16% Similarity=0.100 Sum_probs=161.1
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 045355 20 YETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKC 99 (900)
Q Consensus 20 ~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~ 99 (900)
+...+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|+|.+|+..
T Consensus 44 ~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~ 122 (257)
T COG5010 44 LAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSV 122 (257)
T ss_pred HHHHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHH
Confidence 34444555777777777889999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 100 YRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 100 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
++++..+.|++..+|..+|.+|.+.|++++|...|.+++++.|+.+....++|..+...|+++.|..++.. +... +
T Consensus 123 ~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~---a~l~-~ 198 (257)
T COG5010 123 LRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP---AYLS-P 198 (257)
T ss_pred HHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH---HHhC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999955543 3322 2
Q ss_pred CCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 180 PPDNERCEHGEMLLYKISLLEECGSFERALAEMHK 214 (900)
Q Consensus 180 ~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~ 214 (900)
+..+.+..+++.+....|++.+|..+..+
T Consensus 199 ------~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 199 ------AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ------CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 23447788888888888998888877654
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.30 E-value=2.1e-10 Score=135.26 Aligned_cols=205 Identities=14% Similarity=0.056 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH-----------------HH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKC-----------------YR 101 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~-----------------~~ 101 (900)
.|.+.+++..++..+...|++++|+..++.++...|+...+|+.+|.++.+.+++.++.-. |.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 3444445555555554555555555555555555555555555555544444444443333 22
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
..+-..+++..+++.+|.||-++|++++|...|+++++.+|+++.+..++|..|... +.++|+ ..+.+++.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~---~m~~KAV~----- 177 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI---TYLKKAIY----- 177 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH---HHHHHHHH-----
Confidence 222223333366777777777777777777777777777777777777777777766 666666 33333321
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH--------------------HHHHHHHHHHHHcCCHHH
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL--------------------AYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~--------------------~~~~~la~~~~~~g~~~e 241 (900)
.+...++|..+.++..+.+..+|++. ..+.-+-..|...++|++
T Consensus 178 ----------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 178 ----------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred ----------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 13334455555555555555555433 233444477888899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 045355 242 AAELYRALLSMNPDNYSYYEGLQKCLG 268 (900)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (900)
++.+++.+++.+|.|..+...++.|+.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999999999983
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.30 E-value=3.8e-10 Score=133.19 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=166.5
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH--------
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-------- 77 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------- 77 (900)
|....++...+..+...+++++|+..++..++.+|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 344455556666666999999999999999999999999999999999999988887766 6666555554
Q ss_pred -----------HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--
Q 045355 78 -----------VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH-- 144 (900)
Q Consensus 78 -----------~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 144 (900)
.+++.+|.||..+|++++|...|+++++.+|+|+.++.++|..|... ++++|++++.+++...-+.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq 184 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQ 184 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhc
Confidence 78999999999999999999999999999999999999999999999 9999999999998752111
Q ss_pred -H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 045355 145 -R---MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV 220 (900)
Q Consensus 145 -~---~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p 220 (900)
. ..|..+ +.....+.+.=..+++.....+. .......+.-+-..|...+++++++.+++.+++..|
T Consensus 185 ~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~~~--------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 185 YVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGHRE--------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred chHHHHHHHHH--HhcCcccchHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 0 112211 11112222222222222222111 023345666677888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 045355 221 DKLAYKEQEVSLLVK 235 (900)
Q Consensus 221 ~~~~~~~~la~~~~~ 235 (900)
.+..+...++.+|..
T Consensus 255 ~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 255 KNNKAREELIRFYKE 269 (906)
T ss_pred cchhhHHHHHHHHHH
Confidence 999999999999873
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.27 E-value=3.7e-10 Score=132.81 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
..+++.-+......+|.+++++.++|.+..+.|++++|..+++.++...|++..++..++.++.+.+++++|+..+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 34445555555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q 045355 105 RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED 177 (900)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~ 177 (900)
..+|++..++..+|.++.++|++++|+..|++++..+|++..+|+.+|.++...|+.++|. ..|++++..
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~---~~~~~a~~~ 217 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR---DVLQAGLDA 217 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 556666554
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=1.5e-08 Score=127.57 Aligned_cols=347 Identities=14% Similarity=0.041 Sum_probs=230.0
Q ss_pred HHHHHhhccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHH
Q 045355 16 IVKSYETKQYKKGLKAADAIL-KKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK---------SHVCWHVYGL 85 (900)
Q Consensus 16 a~~~~~~g~~~~Al~~~~~~l-~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~lg~ 85 (900)
+......|++.....+++.+- .....++......+.++...|++++|..++..+....+. ...+...+|.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344444555555444443321 011223445567788888999999999999988764221 2334566788
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNI-----EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH------RMNWIGFAVS 154 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~ 154 (900)
++...|++++|...+++++...+... .++..+|.++...|++++|...+.+++...... ...+..++.+
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 89999999999999999998655422 346778889999999999999999998753321 2345678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-----CHHHHHHHH
Q 045355 155 HHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV-----DKLAYKEQE 229 (900)
Q Consensus 155 ~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p-----~~~~~~~~l 229 (900)
+...|++++|...+............... +....++..++.++...|++++|...+.+++.... .....+..+
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQL--PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 99999999999766665544332111110 22234456788999999999999999999876522 235566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH---H-HHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhh
Q 045355 230 VSLLVKIGRLEEAAELYRALLSMNPDNY---SYYEGL---Q-KCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVK 302 (900)
Q Consensus 230 a~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l---~-~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 302 (900)
|.++...|++++|...+.++....+... ...... . ..+ ...|+.+.+...+.....
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~A~~~l~~~~~--------- 681 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW--------QMTGDKEAAANWLRQAPK--------- 681 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH--------HHCCCHHHHHHHHHhcCC---------
Confidence 9999999999999999999977543221 000000 0 000 002222222222211100
Q ss_pred hchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHH
Q 045355 303 RIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWT 382 (900)
Q Consensus 303 ~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a 382 (900)
+ ....+......
T Consensus 682 -----------------------------------------------------------------~---~~~~~~~~~~~ 693 (903)
T PRK04841 682 -----------------------------------------------------------------P---EFANNHFLQGQ 693 (903)
T ss_pred -----------------------------------------------------------------C---CCccchhHHHH
Confidence 0 00000001112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEAIEHTP------TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY 449 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~al~~~P------~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~ 449 (900)
+..+|.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+|+++.....+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 45788899999999999999999987632 34567889999999999999999999999998655443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=127.87 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=201.5
Q ss_pred CCCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 3 ASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 3 ~~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
..+||..+-....+..+...|-.+.|+.+|++. +.|.....||...|+..+|..+..+-++ .|.++..|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 457888888888899999999999999999985 6788889999999999999999999998 6667888889
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
+|.+.....-|++|.+.++.. +..+.+.+|......++|.++...++..++++|-....|+.+|.+..+.++++
T Consensus 463 LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 999888877777777776543 45577888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 242 (900)
.|. +.|...+..+ |++.++|.+++..|...|+-.+|...+.++++.+-++..+|.+...+..+.|.+++|
T Consensus 537 ~av---~aF~rcvtL~-------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 537 AAV---KAFHRCVTLE-------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHH---HHHHHHhhcC-------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 999 5666666655 678899999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 045355 243 AELYRALLSMN 253 (900)
Q Consensus 243 ~~~~~~al~~~ 253 (900)
+..|.+.+...
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=4.7e-08 Score=123.10 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---hHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh----HHH
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAIEHTPTV---IDLY----SVKSRILKHAGDLAAAATLADEARCMDLADRY----VNS 452 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al~~~P~~---~~~~----~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~----l~~ 452 (900)
..+|.++...|+++.|...++++....+.. .... ......+...|+.+.|..++.......+.... ...
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 344555555555555555555554432211 0000 01112333455555555555444332222111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 045355 453 ECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYAD 522 (900)
Q Consensus 453 ~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~ 522 (900)
..+..+...|+.++|...+.............. ..+.....+|.+|.+.|+..+|...+.++...+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~--~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMS--DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 344445555566665555433322100000000 11223457899999999999999999999988754
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7e-09 Score=101.95 Aligned_cols=173 Identities=15% Similarity=0.021 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
.+-....+....|+.+-|..++++.-...|++..+-...|..+...|+|++|+++|+..+.-+|.+..++.....+...+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 33344444555566666666666555555666665556666666666666666666666666666655555555555555
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC-
Q 045355 125 RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG- 203 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g- 203 (900)
|+--+|++.+...++..+.+.++|..++.+|...|+|+.|. -++++.+-.. |..+..+..++.+++-+|
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~---fClEE~ll~~-------P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA---FCLEELLLIQ-------PFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHcC-------CCcHHHHHHHHHHHHHHhh
Confidence 55556666666666666666666666666666666666665 3333333333 233344444555544443
Q ss_pred --CHHHHHHHHHHHhhhcCCHHHHHH
Q 045355 204 --SFERALAEMHKKESKIVDKLAYKE 227 (900)
Q Consensus 204 --~~~~Al~~l~~al~~~p~~~~~~~ 227 (900)
+++-|.++|.++++++|.+...++
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 344566666666666665444443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=2.9e-09 Score=125.32 Aligned_cols=151 Identities=12% Similarity=-0.009 Sum_probs=126.9
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
...+..|.+..+++.||.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+ ..+++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~---~~~~~~l~~~--- 150 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGR---AEIELYFSGG--- 150 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHH---HHHHHHhhcC---
Confidence 3345578888888889999888999999999999999999998888888999999999998888 5666666655
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYE 261 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 261 (900)
|++...++.+|.++.+.|++++|+..|++++...|+...++..+|.++...|+.++|...|+++++...+-...+.
T Consensus 151 ----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 151 ----SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred ----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 5677888889999999999999999999999888899999999999999999999999999999988765554443
Q ss_pred H
Q 045355 262 G 262 (900)
Q Consensus 262 ~ 262 (900)
.
T Consensus 227 ~ 227 (694)
T PRK15179 227 R 227 (694)
T ss_pred H
Confidence 3
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=6e-09 Score=111.94 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|+....+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 77788889999999999999999999999888899999989999999999999999999999999999998888899999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
+++..|++.+|+..++..+..+|+++..|..++.+|..+|+..++.. ..+..+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~---------------------------A~AE~~ 435 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL---------------------------ARAEGY 435 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------------------------HHHHHH
Confidence 99999999999999999999999999999999999988888877761 234556
Q ss_pred HHcCCHHHHHHHHHHHhhhc
Q 045355 200 EECGSFERALAEMHKKESKI 219 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~~ 219 (900)
...|++++|+..+.++.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 67788888888888887664
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.5e-10 Score=115.36 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
+.+-.-|.-+...++|.+|+..|.+||.++|.++..|.+.+.+|.++|.|+.|++..+.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
+|++++|++.|+++|.++|++...+..|..+-..++...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888766665554443
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.18 E-value=5.7e-10 Score=103.87 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=102.5
Q ss_pred HHHhC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 045355 35 ILKKF-PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEI 113 (900)
Q Consensus 35 ~l~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 113 (900)
+.... ++.-+..+.+|..++..|++++|...|+-....+|.+...|+.||.++...|+|++|+.+|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 33456 77788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 114 LRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
+..+|.+++..|+.+.|+..|+.++......
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999876443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=5.6e-07 Score=101.03 Aligned_cols=381 Identities=17% Similarity=0.136 Sum_probs=230.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH--------HHHhh---CCCcHHHHHHHHHHH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYR--------NALRI---DPDNIEILRDLSLLQ 121 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~--------~al~~---~p~~~~~~~~la~~~ 121 (900)
|...|+.+.|.+.++-. ++...|-+++.......+.+-|.-|+- +|++. +|+ ..-...|.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 44568888888776532 345678888888888777777666553 22222 333 2334566777
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE 201 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 201 (900)
+++|-.++|...|++.-+. -.+-..|...|.+++|.++.+.-.+ ...-..+++.+.-+..
T Consensus 811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR------------iHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR------------IHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc------------eehhhhHHHHHHHHHh
Confidence 8899999999999987553 3456678888999999866543222 2233678889999999
Q ss_pred cCCHHHHHHHHHHH----------hhhcCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 202 CGSFERALAEMHKK----------ESKIVD----------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYE 261 (900)
Q Consensus 202 ~g~~~~Al~~l~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 261 (900)
.++.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..+-. |+
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~f 942 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YF 942 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hh
Confidence 99999999999875 222332 345667778888889999999999987753 33
Q ss_pred HHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhh
Q 045355 262 GLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLY 341 (900)
Q Consensus 262 ~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly 341 (900)
.+..+. --+|+.++|..+-++. .+-.+.+.++-.|-..+++.+|+..|.++. +|.+-..+.
T Consensus 943 s~VrI~--------C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-------afsnAIRlc 1003 (1416)
T KOG3617|consen 943 SMVRIK--------CIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQ-------AFSNAIRLC 1003 (1416)
T ss_pred hheeeE--------eeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 333322 1257777776665443 333455677777778888888888776654 222222222
Q ss_pred cCCChHHHHH------------HHHHHHHHhhcccCCCCCCCCCCCchhHHHHHH-HHHHHHHHhCCHHHHHHHHHH---
Q 045355 342 DQPGKADILE------------QLILELEHSIGTTGKYPGREEKEPPSTLLWTLF-FLAQHYDRRGQYDVALSKIDE--- 405 (900)
Q Consensus 342 ~~~~~~~~~~------------~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~-~la~~y~~~g~~~~Al~~~~~--- 405 (900)
...+-.+... .+...|.+ .. .+. .--.+|.+.|.+.+|++..=+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe-~g-------------------~~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEE-LG-------------------GYAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHH-cc-------------------hhhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 2211111110 00111100 00 011 112344455666666554221
Q ss_pred --HH-----HcCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 045355 406 --AI-----EHTP-TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD 477 (900)
Q Consensus 406 --al-----~~~P-~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~ 477 (900)
++ .++| .++.++..-+..+....+|++|...+-.+.++. .+.-+....++.--+++..++|-.
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~---------~AlqlC~~~nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS---------GALQLCKNRNVRVTEEFAELMTPT 1134 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchhHHHHHhcCcC
Confidence 11 2233 456667777777777777777777766665532 122233344444455555666552
Q ss_pred CCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 045355 478 GDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEK 518 (900)
Q Consensus 478 ~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~ 518 (900)
.+ ..+.+-.....+..+|+.+.++|.|..|-|.|.++-.
T Consensus 1135 Kd--~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1135 KD--DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred cC--CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 22 2223333445567899999999999999999988733
No 118
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.16 E-value=4.3e-10 Score=116.59 Aligned_cols=271 Identities=11% Similarity=0.039 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH------cCCCcHHHH
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHG----ETLSMKGLTLNCMDRKSEAYELVRLGVK------NDIKSHVCW 80 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~------~~p~~~~~~ 80 (900)
.+-..|..++..|++..++.+|+.+++.-.++. .+|..+|.+|+.+++|++|+++-.--+. .........
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 345677889999999999999999999877664 4678899999999999999988654332 122234455
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPD------NIEILRDLSLLQAQMRD--------------------LTGFVETR 134 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~ 134 (900)
-++|.++...|.|++|+.|..+-+.+... ...+++++|.+|...|+ ++.|++.|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 68999999999999999999887765322 35679999999987663 44556666
Q ss_pred HHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHH
Q 045355 135 QQLLTLKPN------HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERA 208 (900)
Q Consensus 135 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 208 (900)
..-+++... ...++-++|..|+.+|+|+.|+..-+.-..+.. ... .+.....++.++|.++.-.|+++.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~-efG---DrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ-EFG---DRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH-Hhh---hHHHHHHhhcccchhhhhhcccHhH
Confidence 555544221 224566788899999999999954322111111 110 1122336788999999999999999
Q ss_pred HHHHHHHhhhcC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHhcccccCCCC
Q 045355 209 LAEMHKKESKIV------DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN------PDNYSYYEGLQKCLGLYRDNGNY 276 (900)
Q Consensus 209 l~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~l~~~~~~~ 276 (900)
+++|...+.+.. -.....+.+|..|.-...++.|+.++.+-+.+. -....+++.|+..+ .
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~--------~ 326 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF--------N 326 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------H
Confidence 999998765421 235677889999999999999999999877653 23346777777777 4
Q ss_pred CCCcHHHHHHHHHHHHH
Q 045355 277 SSGEIDELDALYKSLAQ 293 (900)
Q Consensus 277 ~~~~~~~A~~~~~~~~~ 293 (900)
..|..++|+.+.+..++
T Consensus 327 alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLR 343 (639)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 46777888777766554
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=3.6e-09 Score=113.60 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
.....|..++..|..|++++|+..++..++..|+|+..+...+.++...|+..+|.+.+++++..+|.....+.++|..+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
...|++.+|+..++..+..+|+++..|..|+..|..+|+-.++.. ..+..+...|++++|+..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999998876654 455667788999999977
Q ss_pred HHHHHhhhccC
Q 045355 168 LEAYEGTLEDD 178 (900)
Q Consensus 168 l~~~~~~l~~~ 178 (900)
+....+..+.+
T Consensus 448 l~~A~~~~~~~ 458 (484)
T COG4783 448 LMRASQQVKLG 458 (484)
T ss_pred HHHHHHhccCC
Confidence 66666655544
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.13 E-value=9.6e-10 Score=121.04 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|.++.+|+.+|.++...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
|+|++|+..|+++++++|++..+...++.+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999888877777765554
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=5.8e-10 Score=118.30 Aligned_cols=262 Identities=12% Similarity=0.032 Sum_probs=189.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPE-HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
-.+..+|-.|+|..++..++ ....+|. ..+....+.+++..+|+++..+.-+... .+....+...++..+...++
T Consensus 6 f~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 6 FTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccc
Confidence 34567888999999998777 3333332 3457788999999999988776555432 23334556677777766667
Q ss_pred HHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 93 YREAIKCYRNALRID--PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 93 ~~eAi~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
-+.++..++..+... +.++.+....|.++...|++++|++.+.+. ++.+.......++...++++.|.+.++.
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777887776655433 235556677778888899999999988764 5678888888999999999999977777
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEECG--SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRA 248 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 248 (900)
+.+.- .+..-+.+..+.+....| .+.+|.-.|++.....+..+..+..++.+++.+|++++|...+.+
T Consensus 157 ~~~~~----------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 157 MQQID----------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHCCS----------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhcC----------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65431 122223333344444444 699999999999888888899999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhcccccCCCCCCCcH-HHHHHHHHHHHHhcCcchhhh
Q 045355 249 LLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEI-DELDALYKSLAQQYTWSSAVK 302 (900)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~ 302 (900)
++..+|.++..+.+++.+.. ..|+. +.+.+++.++...+|..+...
T Consensus 227 al~~~~~~~d~LaNliv~~~--------~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 227 ALEKDPNDPDTLANLIVCSL--------HLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HCCC-CCHHHHHHHHHHHHH--------HTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhccCCHHHHHHHHHHHH--------HhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999988762 24544 667788888888899887554
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=8.6e-08 Score=95.96 Aligned_cols=188 Identities=12% Similarity=0.035 Sum_probs=119.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 045355 54 NCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 54 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 133 (900)
.+-.++..|++++..-.+..|.+...+..+|.||+...+|..|..||++.-.+.|...+.....+..+.+.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777666777777777777777766
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 134 RQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMH 213 (900)
Q Consensus 134 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~ 213 (900)
...+.....-.......-+.+.+..+++..+..++++ + +. ..........|.+..+.|+++.|+.-|+
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----l---p~-----en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----L---PS-----ENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----c---cC-----CCccchhccchheeeccccHHHHHHHHH
Confidence 6655432111112233334455555666655533322 1 10 1223556666777777777777777777
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 214 KKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 214 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
.+++...-++.+-++++.++++.|++..|+++..+.+++.
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 7777666666666677777777777777777666666554
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=2e-09 Score=100.23 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
..-..++..|..+++.|++++|.+.|+-+...+|.+...|+.+|.++..+|++++|+..|.+++.++|+++..+...|.|
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCC
Q 045355 87 YRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+...|+.+.|.++|+.++.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988633
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.09 E-value=1.8e-09 Score=101.89 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
.....+..+..++..|++++|+..+++++..+|.++.++..+|.++..+|++++|..++++++..+|.++..++.+|.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
...|++++|+..|+++++.+|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999887643
No 125
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.07 E-value=3.2e-09 Score=110.30 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=168.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhC------CCcHHHHHHH
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDIKSH----VCWHVYGLLYRSDREYREAIKCYRNALRID------PDNIEILRDL 117 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAi~~~~~al~~~------p~~~~~~~~l 117 (900)
.-|.-++++|+....+.+|+.+++....+. ..|..+|..|+..++|++|+++-.--+.+. -.....--+|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345666777777777777777777655442 345667777777777777776543322211 1122334456
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHH
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKP------NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEM 191 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~ 191 (900)
|.++-.+|.|++|+.+..+-+.+.. ....+++++|.+|+..|+.-... .|.... ....++
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~------------~pee~g--~f~~ev 167 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE------------APEEKG--AFNAEV 167 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC------------Chhhcc--cccHHH
Confidence 6666666777776666665554321 12234555555555555432211 000000 000000
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESKIVD------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN------YSY 259 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~ 259 (900)
. ..++.|.++|..-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+.... ..+
T Consensus 168 ~----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 168 T----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 0 1134555666555554322 23456678888888999999988877666543221 245
Q ss_pred HHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhh
Q 045355 260 YEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSP 339 (900)
Q Consensus 260 ~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ 339 (900)
+.++++|+ +-.|+++.|++.|+..+..
T Consensus 238 ~sNlgN~h--------iflg~fe~A~ehYK~tl~L--------------------------------------------- 264 (639)
T KOG1130|consen 238 HSNLGNCH--------IFLGNFELAIEHYKLTLNL--------------------------------------------- 264 (639)
T ss_pred hcccchhh--------hhhcccHhHHHHHHHHHHH---------------------------------------------
Confidence 55666665 3355566666666544211
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------Cc
Q 045355 340 LYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP------TV 413 (900)
Q Consensus 340 ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P------~~ 413 (900)
+.++-+ ........|.||..|.-..++++|+.|+.+-+.+.. ..
T Consensus 265 ----------Aielg~--------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 265 ----------AIELGN--------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred ----------HHHhcc--------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000000 001111567899999999999999999998776644 34
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 414 IDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 414 ~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
..+++.+|..+-..|..++|+.+.++.+++
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 568899999999999999999998888765
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=3.5e-08 Score=102.21 Aligned_cols=163 Identities=9% Similarity=0.034 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGET---LSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWH 81 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 81 (900)
.....+..|..++..|+|++|+..|++++..+|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45678899999999999999999999999999998765 4899999999999999999999999998876 45788
Q ss_pred HHHHHHHhcc------------------CHHHHHHHHHHHHhhCCCcHHH-----------------HHHHHHHHHHhcC
Q 045355 82 VYGLLYRSDR------------------EYREAIKCYRNALRIDPDNIEI-----------------LRDLSLLQAQMRD 126 (900)
Q Consensus 82 ~lg~~~~~~g------------------~~~eAi~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~ 126 (900)
.+|.++...+ ...+|+..|++.++..|+..-+ -...|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8998864443 1357889999999999986532 2456788999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 127 LTGFVETRQQLLTLKPNHR---MNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
|..|+.-++.++...|+.+ +++..++.+|..+|..++|..+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999988754 6788999999999999999755443
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=2.4e-08 Score=100.99 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---HHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---VCWH 81 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~ 81 (900)
.+..++..|..+++.|+|.+|+..|++++..+|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35689999999999999999999999999998875 57899999999999999999999999999988864 5788
Q ss_pred HHHHHHHhc-----------cCHHHHHHHHHHHHhhCCCcHHH-----------------HHHHHHHHHHhcCHHHHHHH
Q 045355 82 VYGLLYRSD-----------REYREAIKCYRNALRIDPDNIEI-----------------LRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 82 ~lg~~~~~~-----------g~~~eAi~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 133 (900)
.+|.++... +...+|+..|+..++..|++..+ -..+|..|.+.|.|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 888886554 34568999999999999986432 34578889999999999999
Q ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 045355 134 RQQLLTLKPNHR---MNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 134 ~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 165 (900)
++.+++..|+.. .++..++.++..+|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999876 56888999999999988554
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.01 E-value=5.8e-09 Score=114.86 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=106.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
+...|..++..|++++|+.+|++++..+|++..+|..+|.++...|++++|+..+++++.++|++..+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN 158 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (900)
++++|+..|++++.++|++......++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999887776665444
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.99 E-value=1.2e-07 Score=98.20 Aligned_cols=182 Identities=10% Similarity=0.015 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH---HHH
Q 045355 41 EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVC---WHVYGLLYRSDREYREAIKCYRNALRIDPDNI---EIL 114 (900)
Q Consensus 41 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~ 114 (900)
..+..++..|..+...|++++|+..|++++...|.++.+ .+.+|.++...++|++|+..|++.++..|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778899999999999999999999999999988655 48899999999999999999999999988864 467
Q ss_pred HHHHHHHHHhc---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 045355 115 RDLSLLQAQMR---------------D---LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLE 176 (900)
Q Consensus 115 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~ 176 (900)
+.+|.++...+ | ...|+..++++++..|+..-+ .+|...+..+...+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~la 175 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDRLA 175 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHHHH
Confidence 88887764443 1 246778899999999987542 334433333333332
Q ss_pred cCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 177 DDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD---KLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
+--+..|..|.+.|.|..|+.-++.+++..|+ ..+++..++..|..+|..++|......+
T Consensus 176 -------------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 -------------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -------------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34457899999999999999999999998776 5678889999999999999998776544
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.5e-08 Score=113.10 Aligned_cols=222 Identities=13% Similarity=0.025 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|........++..+...|-..+|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 444556678899999999999999999874 4577888999999999999999999888 6777888888888
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
+....--|++|.+..+.. +..+...+|......++|+++. ..++..+..+ |-....|+.+|.+.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~---~hle~sl~~n-------plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEAD---KHLERSLEIN-------PLQLGTWFGLGCAA 529 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHH---HHHHHHhhcC-------ccchhHHHhccHHH
Confidence 877766666666666543 2335566666677789999999 6666677766 55668999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCC
Q 045355 200 EECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSG 279 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~ 279 (900)
.+.++++.|...|.+.+...|++...|.+++..|.+.|+..+|...+.++++-+-+++..|.+...+. .+.|
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs--------vdvg 601 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS--------VDVG 601 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh--------hhcc
Confidence 99999999999999999999999999999999999999999999999999999988888888776665 6688
Q ss_pred cHHHHHHHHHHHHHh
Q 045355 280 EIDELDALYKSLAQQ 294 (900)
Q Consensus 280 ~~~~A~~~~~~~~~~ 294 (900)
.+++|++.|.++...
T Consensus 602 e~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDL 616 (777)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999888764
No 131
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=3.8e-08 Score=104.54 Aligned_cols=234 Identities=13% Similarity=0.086 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCcHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKND--IKSHVCWHVYGL 85 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~ 85 (900)
+....+-....+...|+++..+..... ..+....+...++..+...++.+.++.-++..+... +.+.......|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556677788889998876654432 233344566677776666667778887777665432 235566677788
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS--NGSK 163 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~ 163 (900)
++...|++++|++.+.+. ++.+.......++..+++++.|...++.+-+.+.+..-.....+.+....| ++.+
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 999999999999988654 567888888899999999999999999999888776655555555555555 5889
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCH-HHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRL-EEA 242 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~eA 242 (900)
|.-+++.+.... +..+.++..++.++..+|++++|...+.+++..+|.++.++.+++.+...+|+. +.+
T Consensus 186 A~y~f~El~~~~----------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 186 AFYIFEELSDKF----------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHHHHHHCCS------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHhcc----------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 986555543221 234577889999999999999999999999999999999999999999999999 667
Q ss_pred HHHHHHHHHhCCCCHHH
Q 045355 243 AELYRALLSMNPDNYSY 259 (900)
Q Consensus 243 ~~~~~~al~~~p~~~~~ 259 (900)
.+++.++...+|+++..
T Consensus 256 ~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCCChHH
Confidence 78888888899988654
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.93 E-value=1.9e-08 Score=92.28 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVY 83 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 83 (900)
..++..|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+.++++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677777777777777777777777777665 4567777777777777777777777777766654 4567777
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
|.++...|++++|+.+|++++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7777777777777777777777777765543
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=2e-07 Score=94.29 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH---HHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI---EILR 115 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~~ 115 (900)
.+..++..|..++..|++.+|+..|++++...|.+ ..+++.+|.++...|+|++|+..|++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999987765 56789999999999999999999999999998865 4688
Q ss_pred HHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 116 DLSLLQAQMR-----------DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 116 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
.+|.++..+. ...+|+..|+.++...|++..+ .+|...+..+...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~~la-------- 141 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRNRLA-------- 141 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHHHHH--------
Confidence 8888766543 3457899999999999987653 344433333333332
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHcCCHHHHH
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK---LAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~ 243 (900)
+--+..|..|.+.|.+..|+..++.+++..|+. ..++..++..|.++|..+.|.
T Consensus 142 -----~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 -----EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -----HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 445678999999999999999999999998875 457888999999999988553
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4e-08 Score=100.52 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHH
Q 045355 24 QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR---EYREAIKCY 100 (900)
Q Consensus 24 ~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAi~~~ 100 (900)
+.+.-+.-++.-|..+|+|++.|.++|.+|..+|++..|...|.+++++.|+++..+..+|.++..+. ...++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35556667777788888888888888888888888888888888888888888888888888765543 356788888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 101 RNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 101 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
++++..+|.++.++..||..+++.|+|.+|+..++.++...|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 8888888888888888888888888888888888888887776543
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.91 E-value=5.2e-08 Score=93.00 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWH 81 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 81 (900)
+....|..+...+..+++..+...++.+++.+|+. ..+...+|.+++..|++++|...|+.++...|+. ..++.
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34567888888888999999999999999999998 4577889999999999999999999999877654 45778
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLL 138 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 138 (900)
.++.++...|+|++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 899999999999999999966 33444566778889999999999999999998764
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00021 Score=82.52 Aligned_cols=441 Identities=15% Similarity=0.073 Sum_probs=246.3
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
-|....+....|..+.+.|.+++|..+++..-...+++..++-.+-.+|..+|+.++|..+|++++..+|. ....+.+-
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 35556677788899999999999998888777778888899999999999999999999999999999999 67777788
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-cCH---------HHHHHHHHHHHHhC-CCCH-HHHHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQM-RDL---------TGFVETRQQLLTLK-PNHR-MNWIGFA 152 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~-g~~---------~~A~~~~~~al~~~-p~~~-~~~~~la 152 (900)
.+|.+.+.|.+=.+.--+..+..|+++..+.....++++. ... .-|...+++.+... +-.. .-....-
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 8888888887765555555567888877655555555442 222 23455566666655 2221 2233445
Q ss_pred HHHHHcCCHHHHHHHHHH-HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHH-H-
Q 045355 153 VSHHLNSNGSKAVEILEA-YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQ-E- 229 (900)
Q Consensus 153 ~~~~~~g~~~~A~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~-l- 229 (900)
.++..+|++++|..++.. +...+ + +............+...+++.+-.+...+++...+|+..++.. .
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l---~------~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~ 268 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKL---T------SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVF 268 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhc---c------ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 567778999999976632 11111 1 1122344466777888999999999999999999887222111 0
Q ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCc
Q 045355 230 -----------VSLLVKIGRLEEAAELYRALLSMNPDNY-SYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTW 297 (900)
Q Consensus 230 -----------a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 297 (900)
+..+...+..+..++..++.+.-+..++ -++..+..-+ ...|+.++....|-+-...-|-
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~--------~~~gd~ee~~~~y~~kfg~kpc 340 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRY--------KLIGDSEEMLSYYFKKFGDKPC 340 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHh--------cccCChHHHHHHHHHHhCCCcH
Confidence 1111122233333333333333222221 1111111111 2357777766655443333232
Q ss_pred chhhhhchhhcccchHHHHHHHHhHHhhhhcCCCh----------h---hhchhhhhcCCC---hHHHHHHHHHHHHHhh
Q 045355 298 SSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPS----------L---FSDLSPLYDQPG---KADILEQLILELEHSI 361 (900)
Q Consensus 298 ~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~----------~---~~~L~~ly~~~~---~~~~~~~~l~~~~~~l 361 (900)
...-....+..+..++...-+..+. ...+..+ . ...+-..|.... ....+.+....|.+.+
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 1111111111111111111111110 0111100 0 001111111111 1112223333333322
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHH-----HHHHHhCC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 045355 362 GTTGKYPGREEKEPPSTLLWTLFFLA-----QHYDRRGQ---YDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAA 433 (900)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~a~~~la-----~~y~~~g~---~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA 433 (900)
....+.. ..+... ...+..++ ..+.+.++ +-+|+-.++..+..+|.+...-..+-+||.-.|-+..|
T Consensus 418 s~~K~ll---~TE~~~--g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a 492 (932)
T KOG2053|consen 418 SLSKDLL---PTEYSF--GDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDA 492 (932)
T ss_pred ccccccc---cccccc--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhH
Confidence 2111110 011111 11233333 44555554 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHH
Q 045355 434 ATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTA 471 (900)
Q Consensus 434 ~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~ 471 (900)
.+.|+..--.+-+.-.+.......+...|++.-+...+
T Consensus 493 ~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~ 530 (932)
T KOG2053|consen 493 YELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTF 530 (932)
T ss_pred HHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHH
Confidence 99998542212222223333334444455655555444
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=3.9e-08 Score=96.58 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=103.4
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEH--GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREY 93 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 93 (900)
+|-.++|..+...+..+++..+.. ...++.+|.++..+|++++|+..|++++...|+. ..+|..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344556777777887777666655 5677999999999999999999999999886653 45899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHH-------HhcCHH-------HHHHHHHHHHHhCCCCH
Q 045355 94 REAIKCYRNALRIDPDNIEILRDLSLLQA-------QMRDLT-------GFVETRQQLLTLKPNHR 145 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 145 (900)
++|+.+|++++.++|.+...+..+|.++. ..|+++ +|+..+++++..+|.+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999888888888 677766 45555556666677543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.86 E-value=4.7e-08 Score=89.67 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRD 116 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~ 116 (900)
+++++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+.+|+.++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999988876 5688999999999999999999999999998885 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
+|.++...|++++|+..+++++...|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999887643
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.86 E-value=2.4e-06 Score=88.14 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=173.3
Q ss_pred CCCCCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHc----C
Q 045355 1 MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGE---TLSMKGLTLNCMDRKSEAYELVRLGVKN----D 73 (900)
Q Consensus 1 Mp~~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~---~~~~lg~~~~~~g~~~eA~~~~~~al~~----~ 73 (900)
|.+..|++. ...|..+|...++.+|+..+.+.|..-.+... ++-.+..+...+|.+++++.+.-..+.. .
T Consensus 1 mgq~q~k~q---~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ 77 (518)
T KOG1941|consen 1 MGQDQTKKQ---IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE 77 (518)
T ss_pred CccchhHHH---HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666544 78999999999999999999999986544333 3444556788889998887765444432 1
Q ss_pred C--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-
Q 045355 74 I--KSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-----IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR- 145 (900)
Q Consensus 74 p--~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 145 (900)
. -..+++.+++..+....++.+++.+-+..+.+.... .++...++..+..++.++.+++.|+.+++...++.
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 1 124568889999999999999999887777654322 35677899999999999999999999998754332
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-
Q 045355 146 -----MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI- 219 (900)
Q Consensus 146 -----~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~- 219 (900)
.....++..+.+..++++|+-...........-.-.++....+..+++.++..+..+|..-.|.++.+++.++.
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 56789999999999999998444333222221111122223344566667777777888888888887776542
Q ss_pred -----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 220 -----VDKLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 220 -----p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
+-......-+|++|...|+.+.|..-|+.+..
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22344555677777777777777777766654
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=4.4e-08 Score=84.95 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.+|++++...|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45555555556666666666666666555555555566666666666666666666666666655555666666666666
Q ss_pred CHHHHHHHHHHHHHhCC
Q 045355 126 DLTGFVETRQQLLTLKP 142 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p 142 (900)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666665555544
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=1.4e-07 Score=108.13 Aligned_cols=139 Identities=13% Similarity=0.033 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHc--C
Q 045355 7 SKDANLFKLIVKSYET---KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD--------RKSEAYELVRLGVKN--D 73 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al~~--~ 73 (900)
+..-.++.+|..++.. ++..+|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 3455678888877755 44889999999999999999999999888775542 244566666666663 7
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 74 IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 74 p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
|..+.++..+|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77788898999999999999999999999999999 5789999999999999999999999999999999885
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.81 E-value=1.8e-08 Score=82.55 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCC
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR-EYREAIKCYRNALRIDP 108 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAi~~~~~al~~~p 108 (900)
+.+|..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++..+| ++++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555544
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=1.6e-07 Score=92.49 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
|..+.+++.+|..+...|++++|+.+|++++...|+. ..+++.+|.++...|++++|+.+|++++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456678999999999999999999999999876653 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--------------HHHHHHHHHHHHHhCCCC
Q 045355 117 LSLLQAQMRD--------------LTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 117 la~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 144 (900)
+|.++...|+ +++|++.+++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999988877 566666677777767665
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=2.8e-08 Score=81.38 Aligned_cols=67 Identities=28% Similarity=0.544 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 045355 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR-DLTGFVETRQQLLTLKP 142 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 142 (900)
++..|..+|.++...|+|++|+.+|.++++.+|+++.++..+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999999999999999999 79999999999999988
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=4.3e-07 Score=87.19 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|.+.-+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 55778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhhccCCCCCcchhchhHHHHHHHHHHHH
Q 045355 123 QMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL-EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE 201 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 201 (900)
-.|++.-|.+.+.+..+.+|++|---..+-. -...-++.+|..-+ +.+.+. + .+.+...-+-+++|.+-.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~---d----~e~WG~~iV~~yLgkiS~- 215 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKS---D----KEQWGWNIVEFYLGKISE- 215 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhc---c----HhhhhHHHHHHHHhhccH-
Confidence 9999999999999999999998843222211 22334666666332 222221 1 011222223333333321
Q ss_pred cCCHHHHHHHHHHHhhhcCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045355 202 CGSFERALAEMHKKESKIVD-------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 202 ~g~~~~Al~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 255 (900)
+ ..++++.....+ -.+.++.+|..+...|+.++|...|+-++..+--
T Consensus 216 ----e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 216 ----E---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ----H---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 1 122222222222 2457888999999999999999999999876643
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=7e-08 Score=83.65 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCC
Q 045355 91 REYREAIKCYRNALRIDPD 109 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~ 109 (900)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=1.6e-08 Score=86.43 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=56.7
Q ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPE--HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKC 99 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~ 99 (900)
+|+|++|+..++++++..|. +...++.+|.+++..|++++|+.++++ ...++.+..+++.+|.++..+|+|++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 355566677777777777777777777 666666666667777777777777777777
Q ss_pred HHHH
Q 045355 100 YRNA 103 (900)
Q Consensus 100 ~~~a 103 (900)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=98.77 E-value=3.8e-07 Score=99.05 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhc---cHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCC
Q 045355 11 NLFKLIVKSYETK---QYKKGLKAADAIL---KKFPEHGETLSMKGLTLNCM---------DRKSEAYELVRLGVKNDIK 75 (900)
Q Consensus 11 ~l~~~a~~~~~~g---~~~~Al~~~~~~l---~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al~~~p~ 75 (900)
.++.+|...+..+ ..+.|+.+|.+++ ..+|+.+.++..++.|+... ....+|.++.+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5677777776553 5678999999999 89999999999999998765 2456889999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 045355 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS- 154 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 154 (900)
++.++..+|.+....++++.|+..|++|+.++|+...+++..|.+....|+.++|++.++++++++|....+-+..-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876554443333
Q ss_pred HHHcCCHHHHHH
Q 045355 155 HHLNSNGSKAVE 166 (900)
Q Consensus 155 ~~~~g~~~~A~~ 166 (900)
.+.....++|+.
T Consensus 417 ~~~~~~~~~~~~ 428 (458)
T PRK11906 417 MYVPNPLKNNIK 428 (458)
T ss_pred HHcCCchhhhHH
Confidence 444566777774
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=2e-07 Score=97.26 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---cHHHH
Q 045355 8 KDANLFKLIVKS-YETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK---SHVCW 80 (900)
Q Consensus 8 ~~~~l~~~a~~~-~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~ 80 (900)
.+...|..+..+ +..|+|++|+..|+.+++.+|++ +.+++++|.+|+..|++++|+..|++++...|+ .+.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457778888877 56789999999999999999987 578999999999999999999999999987766 46778
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPDNIEI 113 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 113 (900)
+.+|.++...|++++|+..|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 888999988999999999999999888887654
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=3.1e-08 Score=80.04 Aligned_cols=65 Identities=23% Similarity=0.398 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
+.+|..+...|++++|+..|+++++..|.++++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999875
No 151
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.5e-07 Score=85.55 Aligned_cols=226 Identities=15% Similarity=0.038 Sum_probs=149.9
Q ss_pred hchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQK 265 (900)
Q Consensus 186 ~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 265 (900)
.+....++..|..|-..|-..-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|..+++++|.+.-+..+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred HhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCC
Q 045355 266 CLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPG 345 (900)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~ 345 (900)
.+ +-.|++.-|..-+.+.-+.+|+++.........-..-+..+|.....+..........-..+..+|...-
T Consensus 142 ~~--------YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki 213 (297)
T COG4785 142 AL--------YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI 213 (297)
T ss_pred ee--------eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc
Confidence 65 4478899999999888888888773211111111122344454444444433333333344444444333
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----chHHHHHHH
Q 045355 346 KADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT----VIDLYSVKS 421 (900)
Q Consensus 346 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~----~~~~~~~la 421 (900)
..+.+.+.+.... .. ...-......+|++||..|...|+.++|...|.-++..+-- ..-+.+.++
T Consensus 214 S~e~l~~~~~a~a---~~--------n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~ 282 (297)
T COG4785 214 SEETLMERLKADA---TD--------NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELS 282 (297)
T ss_pred cHHHHHHHHHhhc---cc--------hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222222211110 00 00001122237888999999999999999999888876541 122444455
Q ss_pred HHHHHcCCH
Q 045355 422 RILKHAGDL 430 (900)
Q Consensus 422 ~i~~~~G~~ 430 (900)
.+...+.+.
T Consensus 283 ~l~q~~~~l 291 (297)
T COG4785 283 LLGQDQDDL 291 (297)
T ss_pred Hhccccchh
Confidence 554444333
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00012 Score=82.97 Aligned_cols=186 Identities=14% Similarity=0.093 Sum_probs=117.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 30 KAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 30 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
..++++.+ +|++.+ ...+.....+|..++|..+|++.-+. -.+-.+|...|.+++|.+.-+.-=++ .
T Consensus 790 RAlR~a~q-~~~e~e--akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--H 856 (1416)
T KOG3617|consen 790 RALRRAQQ-NGEEDE--AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--H 856 (1416)
T ss_pred HHHHHHHh-CCcchh--hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--e
Confidence 34445433 444333 33455667778888888888876543 34566777788888877765432111 1
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQL----------LTLKP----------NHRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
-...|++.|.-+...+|.+.|+++|+++ +.-+| .++..|...|..+...|+.+.|+.+
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~-- 934 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF-- 934 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH--
Confidence 2245677777777778888888877653 22222 2334555666666667777777632
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
|.. ..-|+.+.++..-+|+.++|-.+-++ ..+..+.+.+|+.|...|++.+|+..|.++
T Consensus 935 -Y~~---------------A~D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 935 -YSS---------------AKDYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -HHH---------------hhhhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222 13355566666667777777655443 345677788999999999999999888776
Q ss_pred HH
Q 045355 250 LS 251 (900)
Q Consensus 250 l~ 251 (900)
-.
T Consensus 994 qa 995 (1416)
T KOG3617|consen 994 QA 995 (1416)
T ss_pred HH
Confidence 43
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=2.6e-07 Score=90.69 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcCHHHHHH
Q 045355 58 RKSEAYELVRLGVKNDIKS--HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 132 (900)
.+..+...+...++..+.. ..+|+.+|.++...|++++|+..|++++.+.|+. ..++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555554444443 6678999999999999999999999999887763 4589999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045355 133 TRQQLLTLKPNHRMNWIGFAVSHHLNS 159 (900)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g 159 (900)
.+++++.+.|.....+..++.++...|
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999988888888887444
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.8e-07 Score=93.51 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---CHHHHHHHHH
Q 045355 59 KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR---DLTGFVETRQ 135 (900)
Q Consensus 59 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 135 (900)
.+.-+.-++.-+..+|++..-|..||.+|...|++..|...|.+++++.|+|++++..+|.+++... .-.++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777788999999999999999999999999999999999999999999999999887654 4568999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 136 QLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 136 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
+++..+|++..+.+.+|..++..|+|.+|.... +..++..|
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~W---q~lL~~lp 258 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAW---QMLLDLLP 258 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH---HHHHhcCC
Confidence 999999999999999999999999999999544 44454444
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=3.6e-07 Score=85.64 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=100.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 35 ILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 35 ~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
+....++.-+..+..|.-++..|++++|..+|+-....+|.++..|..||.++...++|++|+.+|..+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33345566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHR 145 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (900)
+..|.|++.+|+.+.|+.+|..++. .|.+.
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999998 45543
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=3.7e-07 Score=89.91 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
....++..|..+...|++++|+..|+++++..|+. +.++..+|.++...|++++|+..+++++...|.+...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 33457889999999999999999999999887664 468999999999999999999999999999999999999999
Q ss_pred HHHHhccC--------------HHHHHHHHHHHHhhCCCc
Q 045355 85 LLYRSDRE--------------YREAIKCYRNALRIDPDN 110 (900)
Q Consensus 85 ~~~~~~g~--------------~~eAi~~~~~al~~~p~~ 110 (900)
.++...|+ +++|++++++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999887 677888888888888876
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.68 E-value=2.1e-05 Score=80.43 Aligned_cols=233 Identities=24% Similarity=0.250 Sum_probs=194.1
Q ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Q 045355 13 FKLIVKSYE-TKQYKKGLKAADAILKKFPE--HGETLSMKGLTLNCMDRKSEAYELVRLGVK--NDIKSHVCWHVYGLLY 87 (900)
Q Consensus 13 ~~~a~~~~~-~g~~~~Al~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~lg~~~ 87 (900)
+..+..... .+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...|..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 26 LEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLL 105 (291)
T ss_pred HHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 333333443 47788888888888888776 378889999999999999999999999997 6888889999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSL-LQAQMRDLTGFVETRQQLLTLKP---NHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~ 163 (900)
...+++..++..+..++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 99999999999999999988887666666666 89999999999999999988776 345566666777788899999
Q ss_pred HHHHHHHHHhhhccCCCCCcchhc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCE-HGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEA 242 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 242 (900)
++..+.. .+... +. ....+..++..+...+++..|+..+..++...|.....+..++..+...|.++++
T Consensus 186 a~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 186 ALELLEK---ALKLN-------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHHHH---HHhhC-------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 9955544 44433 22 3577889999999999999999999999999998777777888888888889999
Q ss_pred HHHHHHHHHhCCC
Q 045355 243 AELYRALLSMNPD 255 (900)
Q Consensus 243 ~~~~~~al~~~p~ 255 (900)
...+.+++...|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999987
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=7.5e-08 Score=77.75 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+|..++..|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444444444444444444444444444444444444
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6e-07 Score=95.09 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN 158 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (900)
++.+++.|+..+++|.+|+.+..++|.++|+|..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred CCHHH
Q 045355 159 SNGSK 163 (900)
Q Consensus 159 g~~~~ 163 (900)
..+.+
T Consensus 339 ~~~~~ 343 (397)
T KOG0543|consen 339 REYEE 343 (397)
T ss_pred HHHHH
Confidence 44333
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.66 E-value=8.7e-07 Score=94.75 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=135.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC--CC----cHHHHH
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDI------KSHVCWHVYGLLYRSDREYREAIKCYRNALRID--PD----NIEILR 115 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~--p~----~~~~~~ 115 (900)
..|.+|...|++++|.+.|.++....- ....++...+.+|... ++++|+.+|++++.+. .+ -...+.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 346778888999999999998876421 1234566677777666 9999999999999863 12 234688
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 116 DLSLLQAQM-RDLTGFVETRQQLLTLKP--NH----RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 116 ~la~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
.+|.+|... |++++|++.|++++.+.. +. ...+..+|.++...|+|++|+++++......... ....+..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~---~l~~~~~ 195 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN---NLLKYSA 195 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH---CTTGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc---cccchhH
Confidence 999999998 999999999999998632 12 2456788999999999999996665544322111 1112344
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH-----HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDK-----LAYKEQEVSLLV--KIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~-----~~~~~~la~~~~--~~g~~~eA~~~~~~al~~~ 253 (900)
...++..+.++...|++..|...+++....+|.. ..+...+..++- ....+.+|+.-|...-.++
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 4567778889999999999999999999887742 333444444443 2345677777776655544
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.65 E-value=7.5e-08 Score=82.29 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIK--SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 133 (900)
+|++++|+.++++++..+|. +...|+.+|.+++..|+|++|+..+++ ...+|.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57778888888888877774 455667778888888888888888877 777777777777778888888888888877
Q ss_pred HHHH
Q 045355 134 RQQL 137 (900)
Q Consensus 134 ~~~a 137 (900)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 162
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=9.8e-06 Score=96.62 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCc----HHHHHHHHHHHHhccCHHHHHHHHH
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK-NDIKS----HVCWHVYGLLYRSDREYREAIKCYR 101 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~----~~~~~~lg~~~~~~g~~~eAi~~~~ 101 (900)
+...-|++.+.-+|+..-.|...-......++.++|.+.+++||. +++.. ...|..+-++...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345667888889999999999888889999999999999999997 44433 3456666666666677777888999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
+|.+.. +...++..|..+|...+.+++|.++++.+++...+....|..++..+....+-+.|..+|....+.+..
T Consensus 1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---- 1596 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---- 1596 (1710)
T ss_pred HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----
Confidence 998764 345678999999999999999999999999988888999999999999999999999777765555432
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
.+|.+...-.+.+.++.|+.+.+...|+..+..+|...++|.-+.+.-.+.|+.+.+..+|++++.+.
T Consensus 1597 ----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 ----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999999999999999999999999999999999875
No 163
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.6e-05 Score=77.87 Aligned_cols=264 Identities=10% Similarity=-0.010 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
..+| -+..+|-.|+|..++...++.-. .+...+....+.+.|..+|++..-+.-+..+- .....+...++.....
T Consensus 10 d~LF-~iRn~fY~Gnyq~~ine~~~~~~-~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 10 DELF-NIRNYFYLGNYQQCINEAEKFSS-SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLEL 84 (299)
T ss_pred hhHH-HHHHHHHhhHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhC
Confidence 3444 45677789999999888776544 33778888999999999999876665554432 1223445566666666
Q ss_pred ccCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 90 DREYREAIKCYRNALRID--PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
-++-+.-+......+... ..+...+..-+.+|++-|++++|+...... .+.++...-..++.++.+.+-|.+.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555544332 233344555667899999999999888763 3445555666778888899999855
Q ss_pred HHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHH
Q 045355 168 LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 243 (900)
++.+ ...+ .-..+..++..+.. .+++..|.-+|+..-+..|..+.....++.+.+.+|+|++|.
T Consensus 160 lk~m---q~id---------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 160 LKKM---QQID---------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHH---Hccc---------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHH
Confidence 5544 3322 11344445555543 357899999999999988888999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhh
Q 045355 244 ELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVK 302 (900)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 302 (900)
..++.++..++++++.+.++..+.... ..+.+...+...++...+|..+.+.
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~~-------Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALHL-------GKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHh-------CCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999988876221 2334445566777778888877554
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=7e-07 Score=83.75 Aligned_cols=101 Identities=8% Similarity=-0.056 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
..++..|..+|..|++++|..+|+-+...+|.+++.+..+|.++..++++++|+..|..+..++++++...+..|.||..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCcH
Q 045355 90 DREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~ 111 (900)
.|+...|+.+|..++. .|.+.
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999998 45533
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=2.4e-06 Score=81.46 Aligned_cols=120 Identities=19% Similarity=0.136 Sum_probs=76.8
Q ss_pred HhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 123 QMRDLTGFVETRQQLLTLKPNH---RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
..+++..+...++.++...|+. ..+.+.+|.++...|++++|...|+. ++...+. . .....+.+.++.++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~---~~~~~~d--~--~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEK---ALANAPD--P--ELKPLARLRLARIL 95 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHhhCCC--H--HHHHHHHHHHHHHH
Confidence 4566666666677777766666 34556667777777777777744433 3332211 1 22345666777777
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 200 EECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
...|++++|+..++. ....+..+.++..+|+++...|++++|+..|++++
T Consensus 96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777777777755 23344456677778888888888888888887764
No 166
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=7.2e-06 Score=97.71 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=189.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-CCC----cHHHHHHHHHHHHHhcCHHHHH
Q 045355 57 DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI-DPD----NIEILRDLSLLQAQMRDLTGFV 131 (900)
Q Consensus 57 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~ 131 (900)
++..+..+-|++.+..+|++...|..+-..+.+.++.++|.+.+++||.. ++. -..+|..+-++...-|.-+...
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 34455667888999999999999999999999999999999999999964 333 3456777777777778778888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHH
Q 045355 132 ETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAE 211 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~ 211 (900)
+.|+++.+... ....+..|..+|...+++++|.++++.+.+-+.. ....|..++..++.+++-+.|...
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----------~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----------TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----------hhhHHHHHHHHHhcccHHHHHHHH
Confidence 89999988653 3456888999999999999999988888777652 237999999999999999999999
Q ss_pred HHHHhhhcCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHH
Q 045355 212 MHKKESKIVD--KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYK 289 (900)
Q Consensus 212 l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~ 289 (900)
+.++++.-|. +..+...-|.+-++.|+.+.+..+|+..+..+|...+.|..+...- +..|+.+.+..+|+
T Consensus 1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e--------ik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME--------IKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH--------HccCCHHHHHHHHH
Confidence 9999999887 7888888999999999999999999999999999999999888776 67889999999999
Q ss_pred HHHHhc
Q 045355 290 SLAQQY 295 (900)
Q Consensus 290 ~~~~~~ 295 (900)
+++...
T Consensus 1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred HHHhcC
Confidence 998764
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.57 E-value=0.00011 Score=75.13 Aligned_cols=227 Identities=24% Similarity=0.210 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhcCHHHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIK--SHVCWHVYGLLYRSDREYREAIKCYRNALR--IDPDNIEILRDLSLLQAQMRDLTGFV 131 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 131 (900)
.+.+..+...+...+...+. ........+..+...+++..++..+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 56778888888888888776 367788999999999999999999999997 78888899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHH
Q 045355 132 ETRQQLLTLKPNHRMNWIGFAV-SHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALA 210 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~ 210 (900)
..+..++...+.........+. ++...|+++.|...+.. ++...+. ...........+..+...++++.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK---ALELDPE----LNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 9999999988887666666666 89999999999955444 4442210 01344666677777889999999999
Q ss_pred HHHHHhhhcCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHH
Q 045355 211 EMHKKESKIVD-KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYK 289 (900)
Q Consensus 211 ~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~ 289 (900)
.+.+++...+. ....+..++..+...+++..|...+..++...|.....+..++..+ ...+..+.+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 260 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL--------LELGRYEEALEALE 260 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH--------HHcCCHHHHHHHHH
Confidence 99999999999 6899999999999999999999999999999998666666666666 23567899999999
Q ss_pred HHHHhcCc
Q 045355 290 SLAQQYTW 297 (900)
Q Consensus 290 ~~~~~~p~ 297 (900)
+.....|.
T Consensus 261 ~~~~~~~~ 268 (291)
T COG0457 261 KALELDPD 268 (291)
T ss_pred HHHHhCcc
Confidence 99888876
No 168
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.56 E-value=6.5e-08 Score=98.50 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
..+-.+|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+.+|+++.++..|...+..++.++.....+|...|..-..
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777776666667777777777777777777777776666666666666666666
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 90 DREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
+|+..+|.+.++.+|++.|++......+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 7777777777777777777655544333
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.1e-06 Score=93.18 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFP----EH-----------GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK 75 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p----~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 75 (900)
..-..|..+|+.|+|..|...|++++..-+ .+ ..++.+++.|+..++++.+|+..+.++|..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 345678899999999999999999988533 11 237789999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHhCCC
Q 045355 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF-VETRQQLLTLKPN 143 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~ 143 (900)
|..+++..|.++...|+|+.|+..|+++++++|+|..+...+..+..+...+.+. .+.|..++...+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999998887777665 7788888775543
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=98.56 E-value=4.1e-06 Score=91.15 Aligned_cols=142 Identities=11% Similarity=-0.046 Sum_probs=122.0
Q ss_pred HHHhCCCCH---HHH----HHHHHHHHhCCC---HHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHhc---------cC
Q 045355 35 ILKKFPEHG---ETL----SMKGLTLNCMDR---KSEAYELVRLGV---KNDIKSHVCWHVYGLLYRSD---------RE 92 (900)
Q Consensus 35 ~l~~~p~~~---~~~----~~lg~~~~~~g~---~~eA~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~ 92 (900)
+....|.+. ++| ++.|......+. .+.|+.+|.+++ .++|....+|..++.|+... ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344446555 444 778887777664 568999999999 89999999999999888754 34
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYE 172 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 172 (900)
..+|...-++|++++|.++.++..+|.+....++++.|...|++++.++|+...+|+..|.+....|+.++|. +.++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~---~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR---ICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH---HHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999 6666
Q ss_pred hhhccCC
Q 045355 173 GTLEDDY 179 (900)
Q Consensus 173 ~~l~~~~ 179 (900)
+++..+|
T Consensus 397 ~alrLsP 403 (458)
T PRK11906 397 KSLQLEP 403 (458)
T ss_pred HHhccCc
Confidence 7777764
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.56 E-value=1.8e-06 Score=90.10 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC---cHHHHH
Q 045355 43 GETLSMKGLTL-NCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPD---NIEILR 115 (900)
Q Consensus 43 ~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~---~~~~~~ 115 (900)
....+..+..+ ...|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35777788776 56799999999999999999988 478999999999999999999999999988877 467899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Q 045355 116 DLSLLQAQMRDLTGFVETRQQLLTLKPNHRMN 147 (900)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 147 (900)
.+|.++..+|++++|+..|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999988754
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.55 E-value=2.1e-06 Score=91.87 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----C-C
Q 045355 9 DANLFKLIVKSY-ETKQYKKGLKAADAILKKFP--E----HGETLSMKGLTLNCMDRKSEAYELVRLGVKND-----I-K 75 (900)
Q Consensus 9 ~~~l~~~a~~~~-~~g~~~~Al~~~~~~l~~~p--~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p-~ 75 (900)
...+|..+-..| ..|+|++|...|.++....- + -+..+...+.++... ++++|+.++++++.+. | .
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 356677776666 45999999999999876321 1 134566666666655 9999999999999852 1 1
Q ss_pred cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCC--C----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----
Q 045355 76 SHVCWHVYGLLYRSD-REYREAIKCYRNALRIDP--D----NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH---- 144 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~-g~~~eAi~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 144 (900)
-..++..+|.+|... |++++|+++|++|+.+.. + -...+..+|.++...|+|++|++.|+++....-++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 245789999999999 999999999999998732 1 13457899999999999999999999998754321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH--HcCCHHHHHHHHHHHhhhc
Q 045355 145 ---RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE--ECGSFERALAEMHKKESKI 219 (900)
Q Consensus 145 ---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~Al~~l~~al~~~ 219 (900)
...++..+.++...|++..|...++.|... +|.-.. ..-..+...+...+. ....+..++..|++...++
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ---DPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 134566778888999999999666665433 221111 222234444445543 3457888888888877766
Q ss_pred CCHHHHH
Q 045355 220 VDKLAYK 226 (900)
Q Consensus 220 p~~~~~~ 226 (900)
+-...++
T Consensus 268 ~w~~~~l 274 (282)
T PF14938_consen 268 NWKTKML 274 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544443
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.53 E-value=1.9e-06 Score=94.42 Aligned_cols=120 Identities=20% Similarity=0.163 Sum_probs=101.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHH
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 128 (900)
+-.++...++++.|+.++++..+.+|. +...++.++...++..+|++.+.+++...|.+...+...+..++..++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344555668899999999988888765 55668888888888899999999999989988888888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 129 GFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY 171 (900)
Q Consensus 129 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 171 (900)
.|+...+++....|.+...|+.++.+|...|+++.|+-++..+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998766653
No 174
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=0.0014 Score=73.68 Aligned_cols=376 Identities=16% Similarity=0.128 Sum_probs=204.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH--------------------HHcCCCcHH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLG--------------------VKNDIKSHV 78 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a--------------------l~~~p~~~~ 78 (900)
....|+|++|..+++. +...|+....|..++......|+.--|..+|... +++..+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4567899999887775 5667877777777777666666655555444321 112233344
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHH---------------HHHHHhC--
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETR---------------QQLLTLK-- 141 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---------------~~al~~~-- 141 (900)
.|...+.+....++|.+|...|-. .+ ... .-.-+|..+.+|++|+... -+++.-.
T Consensus 533 fykvra~lail~kkfk~ae~ifle---qn--~te---~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~q 604 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLE---QN--ATE---EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQ 604 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh---cc--cHH---HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCc
Confidence 566666666666666666665522 11 111 1112333444455444332 2222111
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC--CcchhchhHHHHHHHHHHHHcCCHHHHHHH
Q 045355 142 --------PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP--DNERCEHGEMLLYKISLLEECGSFERALAE 211 (900)
Q Consensus 142 --------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~Al~~ 211 (900)
..+.+ -..-...|.+.|.+..|......-+..+...... .....-.+++|-.-|.++.+..++++|+++
T Consensus 605 d~ka~elk~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~ 683 (1636)
T KOG3616|consen 605 DEKAAELKESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALEC 683 (1636)
T ss_pred hhhhhhhccccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHH
Confidence 01111 1122344556666655553211111110000000 000011234555567777788889999999
Q ss_pred HHHH------hhh----cCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCc
Q 045355 212 MHKK------ESK----IVDK-LAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGE 280 (900)
Q Consensus 212 l~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~ 280 (900)
|++. +++ .|.. ...-...|.-+...|+++.|+..|-++-.. ...+... +...+
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------~kaieaa---------i~ake 747 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------IKAIEAA---------IGAKE 747 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-------HHHHHHH---------hhhhh
Confidence 8753 322 3432 344456788889999999999888665321 0111111 33667
Q ss_pred HHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHh
Q 045355 281 IDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHS 360 (900)
Q Consensus 281 ~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~ 360 (900)
|.+|+.+++.+......+..+-.++-.|...++|+-+-+.|.+.- .+.....+|...++...+-++.+.+
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kla~e~--- 817 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKLAEEC--- 817 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHHHHHh---
Confidence 889999998887776666666667777788888888877776653 3445556666666644443333333
Q ss_pred hcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHH-------------HHHHHHH------H----HcCC-CchHH
Q 045355 361 IGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVA-------------LSKIDEA------I----EHTP-TVIDL 416 (900)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~A-------------l~~~~~a------l----~~~P-~~~~~ 416 (900)
.. |......|...|+-+...|+|.+| +..|++. | ++.| ...+.
T Consensus 818 ~~-------------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 818 HG-------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred cC-------------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 11 222222345555555555555544 4444331 1 1222 23456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 417 YSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 417 ~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
+...|.-|...|+...|.+.|-+|-..
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 777888888889988888887766543
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.51 E-value=3.7e-06 Score=96.57 Aligned_cols=141 Identities=11% Similarity=0.049 Sum_probs=117.3
Q ss_pred HHhCCCCHHHH--HHHHHHHHhCCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc--------cCHHHHHHHHHH
Q 045355 36 LKKFPEHGETL--SMKGLTLNCMDR---KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD--------REYREAIKCYRN 102 (900)
Q Consensus 36 l~~~p~~~~~~--~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~eAi~~~~~ 102 (900)
....|.+.++| ++.|.-+...+. ...|+.+|+++++.+|+++.+|-.++.++... .+...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34567777765 677777776655 78999999999999999999998888877553 234566667777
Q ss_pred HHhh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCC
Q 045355 103 ALRI--DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYP 180 (900)
Q Consensus 103 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~ 180 (900)
++.+ +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+ +.|.+++..+|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~---~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA---DAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhcCCC
Confidence 6664 777888999999999999999999999999999999 5789999999999999999999 788888887754
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=2.4e-06 Score=86.72 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVY 83 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 83 (900)
..+|..|..++..|+|..|...|...++.+|+. +.+++++|.+++.+|++++|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 348999999999999999999999999999986 6799999999999999999999999999976654 6789999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
|.+...+|+.++|...|+++++..|+...+.....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999877655433
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=2.1e-05 Score=79.16 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH---HHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV---CWHV 82 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~ 82 (900)
...++..|...++.|+|++|...|+.+...+|.. ..+..+++.+++..+++++|+..+++-+++.|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3578999999999999999999999999988876 468899999999999999999999999999888754 5777
Q ss_pred HHHHHHhc--------cCHHHHHHHHHHHHhhCCCcHHH-----------------HHHHHHHHHHhcCHHHHHHHHHHH
Q 045355 83 YGLLYRSD--------REYREAIKCYRNALRIDPDNIEI-----------------LRDLSLLQAQMRDLTGFVETRQQL 137 (900)
Q Consensus 83 lg~~~~~~--------g~~~eAi~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~a 137 (900)
.|.++... .-..+|+..|+..+...|++.-+ -..+|..|.+.|.+..|+.-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88876543 23467888999999999985322 245678899999999999999999
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 138 LTLKPNH---RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 138 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
++..|+. .+++..+..+|..+|-.++|. ...+.+..+.
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~----~~~~vl~~N~ 234 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAK----KTAKVLGANY 234 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHH----HHHHHHHhcC
Confidence 9987664 467888899999999999996 4455566554
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=3.4e-06 Score=92.55 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=110.8
Q ss_pred HHHHHHH-hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSY-ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~-~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
.....++ ..++++.|+.+++++.+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3334444 348999999999999988875 667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL 140 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (900)
++.|+.+.++++...|++...|..|+.+|..+|+++.|+..++.+-..
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999887755433
No 179
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2.9e-05 Score=83.23 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=118.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCC--------cHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLG-VKNDIK--------SHVCWHVY 83 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a-l~~~p~--------~~~~~~~l 83 (900)
.-....+.+..+.+.+....+.+.....+.+.+++.++..++..|++..|.+.+... +...|. .-.+|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 344455667778887777777777777888999999999999999999999887543 222222 23458899
Q ss_pred HHHHHhccCHHHHHHHHHHHHhh---------CC---------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 045355 84 GLLYRSDREYREAIKCYRNALRI---------DP---------DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR 145 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (900)
|-++++.|.|.-++.+|.+|++. .| ....++++.|..+...|+.-.|.++|.++....-.+|
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999961 11 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 045355 146 MNWIGFAVSHHLN 158 (900)
Q Consensus 146 ~~~~~la~~~~~~ 158 (900)
..|..+|.+....
T Consensus 370 rlWLRlAEcCima 382 (696)
T KOG2471|consen 370 RLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.46 E-value=6.2e-07 Score=73.09 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=51.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 20 YETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 20 ~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
+..|+|++|+..|++++..+|++.++++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888888888888888888888888888888888888888888888888888887777666654
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.44 E-value=1.8e-07 Score=95.33 Aligned_cols=200 Identities=10% Similarity=-0.024 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
+-..|..|+.+|+|++|+.+|.+++..+|.++..+.+.+..|++.+.|..|...+..|+.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHH--HHHHHHHHHHcC
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEM--LLYKISLLEECG 203 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~--~~~la~~~~~~g 203 (900)
...+|.+.++.+|++.|++.+..-.++.+- ...++. -..+.- +.....+...... .-..|..+...|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT---~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKST---PGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcC---CCCCccccchhhhccccCcchhhhhhh
Confidence 999999999999999999776544443332 222322 111111 0000000001111 122366677788
Q ss_pred CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045355 204 SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY 257 (900)
Q Consensus 204 ~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 257 (900)
.++.++.++.+-+..+.++...... +..+.+.-++++++.-..+.+..+|...
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 8888888887766655555444444 6677888888999888888887766543
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.44 E-value=0.00055 Score=71.93 Aligned_cols=302 Identities=14% Similarity=0.092 Sum_probs=202.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhc
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKS--HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-IEILRDLSLLQAQMR 125 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~la~~~~~~g 125 (900)
-|.+..-.|+-..|.+.-.++-++-..+ +.++..-++.-.-.|+|+.|.+-|+..+. +|+. .-.++.|-.--...|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence 4566667789999999888877543322 34455567778889999999999998775 4432 223455555556789
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH-cCC
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE-CGS 204 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~-~g~ 204 (900)
+.+.|+.+-+++....|.-+-++...-...+..|+|+.|+++++.-.......+. . -+...+.+.-+..... .-+
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~--~--aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD--V--AERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh--h--HHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988888889999999999888765544332221 1 2233333333333322 245
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHH
Q 045355 205 FERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDEL 284 (900)
Q Consensus 205 ~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A 284 (900)
...|...-.++.++.|+-...-..-+..+++.|+..++-.+++.+.+..|... .+......- .|+. +
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-ia~lY~~ar----------~gdt--a 311 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-IALLYVRAR----------SGDT--A 311 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-HHHHHHHhc----------CCCc--H
Confidence 77888888888888888888888888889999999999999998888887542 221111111 1211 1
Q ss_pred HHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhccc
Q 045355 285 DALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTT 364 (900)
Q Consensus 285 ~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~ 364 (900)
+.-++++.. + .+++
T Consensus 312 ~dRlkRa~~------------------------------------------------------------L----~slk-- 325 (531)
T COG3898 312 LDRLKRAKK------------------------------------------------------------L----ESLK-- 325 (531)
T ss_pred HHHHHHHHH------------------------------------------------------------H----HhcC--
Confidence 111111100 0 0000
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 045355 365 GKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHA-GDLAAAATLADEARCM 443 (900)
Q Consensus 365 ~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~-G~~~eA~~~~~~al~l 443 (900)
+... ...+..+..-...|++..|..--+.+....|.. .+|..+++|-... |+-.++..++-+++.-
T Consensus 326 ~nna------------es~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNA------------ESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccch------------HHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 0000 034566777777888888888888888888764 4677788887765 8888888888888764
Q ss_pred CcCCh
Q 045355 444 DLADR 448 (900)
Q Consensus 444 dp~d~ 448 (900)
|.|+
T Consensus 393 -PrdP 396 (531)
T COG3898 393 -PRDP 396 (531)
T ss_pred -CCCC
Confidence 4444
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.42 E-value=7.3e-06 Score=75.32 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---HHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---VCWHV 82 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~ 82 (900)
+..++..|...++.|+|.+|++.|+.+...+|.. ..+...+|.+|+..|++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4689999999999999999999999999988865 56889999999999999999999999999998875 46888
Q ss_pred HHHHHHhccC
Q 045355 83 YGLLYRSDRE 92 (900)
Q Consensus 83 lg~~~~~~g~ 92 (900)
.|.++..+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8888887765
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.8e-06 Score=79.12 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKS-----HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
-.-|.-++..|+|++|..-|..||...|.. ..+|.+.|.++..++.++.|+....++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 345677788888888888888888887754 456788888888899999999999999999998888888888999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
.++..|++|++.|.++++.+|...++.-..+.+--......+.
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 8888899999999999999888887776666554444433333
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.36 E-value=0.00021 Score=72.10 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 045355 188 HGEMLLYKISLLEECGSFERALAEMHKKESKIVD---KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYS---YYE 261 (900)
Q Consensus 188 ~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 261 (900)
....++..|....+.|++++|...|+.+....|. ...+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3578899999999999999999999999988765 4678899999999999999999999999999988753 333
Q ss_pred HHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhh
Q 045355 262 GLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLY 341 (900)
Q Consensus 262 ~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly 341 (900)
..|.++-..-.+...++.-...|..-|+.++..+|++.....
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d-------------------------------------- 154 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD-------------------------------------- 154 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh--------------------------------------
Confidence 333332111111112344467788889999999998873310
Q ss_pred cCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---chHHHH
Q 045355 342 DQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT---VIDLYS 418 (900)
Q Consensus 342 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~---~~~~~~ 418 (900)
+...+......+.. -=+..|..|.+.|.+..|+..++..++..|+ ..+++.
T Consensus 155 --------A~~~i~~~~d~LA~------------------~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~ 208 (254)
T COG4105 155 --------AKARIVKLNDALAG------------------HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALA 208 (254)
T ss_pred --------HHHHHHHHHHHHHH------------------HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHH
Confidence 11111111111110 1246788999999999999999999998774 457888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 419 VKSRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 419 ~la~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
.+..+|..+|-.++|...-.-.-.--|+++
T Consensus 209 ~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 209 RLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 899999999999999776544433344444
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=8.7e-06 Score=73.71 Aligned_cols=94 Identities=20% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC---cHHHHHHHH
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPD---NIEILRDLS 118 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~---~~~~~~~la 118 (900)
+++.+|.++-..|+.++|+.+|++++...+.. ..++..+|..++..|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34455555555555555555555555532222 334455555555555555555555555554444 444444444
Q ss_pred HHHHHhcCHHHHHHHHHHHH
Q 045355 119 LLQAQMRDLTGFVETRQQLL 138 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al 138 (900)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555554444433
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.33 E-value=1.4e-06 Score=70.88 Aligned_cols=64 Identities=25% Similarity=0.229 Sum_probs=34.5
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
..|+|++|+..|++++..+|++..++..+|.+++..|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555544444333
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.33 E-value=1.6e-05 Score=71.95 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN---HRMNWIGF 151 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 151 (900)
.+++.+|.++...|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467889999999999999999999999976554 467889999999999999999999999998888 77788888
Q ss_pred HHHHHHcCCHHHHHHH
Q 045355 152 AVSHHLNSNGSKAVEI 167 (900)
Q Consensus 152 a~~~~~~g~~~~A~~~ 167 (900)
+.++...|++++|+..
T Consensus 82 Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 9999999999999943
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.7e-06 Score=70.43 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 51 LTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 51 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
.+|...+++++|++++++++..+|+++..|..+|.++...|++.+|+..|+++++..|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555544443
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.5e-06 Score=70.60 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=61.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHH
Q 045355 386 LAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVN 451 (900)
Q Consensus 386 la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~ 451 (900)
|..+|...+++++|++++++++..+|+++.++..+|.++..+|++.+|.+.|+++++.+|+++...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999887543
No 191
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=2.9e-05 Score=73.90 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG-----ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY 83 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 83 (900)
...+-..|..+|..|+|.+|..-|..+|...|..+ ..|.+.|.++..++.++.|+..+.+++.++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34566788999999999999999999999988754 3677889999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~ 120 (900)
+.+|.....|++|+..|++.++.+|...++....+.+
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999877665555444
No 192
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.22 E-value=0.0039 Score=70.18 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh----HHHHHHHHHHHcC-ChHHHHHHH
Q 045355 412 TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY----VNSECVKRMLQAD-QVSLAEKTA 471 (900)
Q Consensus 412 ~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~----l~~~~a~~~l~~g-~~eeA~~~~ 471 (900)
..++.+..++..+...|++++|.+.|-++++++.-+.. +-+..-.-.+|.| ..++|.+++
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 45778999999999999999999999999999876641 1111122234555 667776554
No 193
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.015 Score=63.05 Aligned_cols=423 Identities=15% Similarity=0.052 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCc---HHHHHHHHHH-HHhccCHHHHHHHHHHHHhhC---CCc----
Q 045355 44 ETLSMKGLTLNCMD--RKSEAYELVRLGVKNDIKS---HVCWHVYGLL-YRSDREYREAIKCYRNALRID---PDN---- 110 (900)
Q Consensus 44 ~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~---~~~~~~lg~~-~~~~g~~~eAi~~~~~al~~~---p~~---- 110 (900)
.++..+|..+...| +...++++++..+...|.+ ..+...+|.+ ++..++++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666677777777 7888888888887766654 3456667764 566788888888888887664 332
Q ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCc-c
Q 045355 111 IEILRDLSLLQAQMR-DLTGFVETRQQLLTLKPNHRM----NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDN-E 184 (900)
Q Consensus 111 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~-~ 184 (900)
.++...|+.+|.+.. .+..+...+++++++..+.+. ..+.++.++....++..|++.|.. +....+ .
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLav-------ga~sAd~~ 160 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV-------GAESADHI 160 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc-------cccccchh
Confidence 234666777877776 778888888888888777763 234566777777777777754321 110000 0
Q ss_pred hhchhHHHH--HHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 045355 185 RCEHGEMLL--YKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY----- 257 (900)
Q Consensus 185 ~~~~~~~~~--~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----- 257 (900)
......+.+ ..+.++....+..+....+ ....+.++....|+
T Consensus 161 ~~~ylr~~ftls~~~ll~me~d~~dV~~ll-------------------------------~~~~qi~~n~~sdk~~~E~ 209 (629)
T KOG2300|consen 161 CFPYLRMLFTLSMLMLLIMERDDYDVEKLL-------------------------------QRCGQIWQNISSDKTQKEM 209 (629)
T ss_pred hhHHHHHHHHHHHHHHHHhCccHHHHHHHH-------------------------------HHHHHHHhccCCChHHHHH
Confidence 001111111 1222222222222222222 22222222221111
Q ss_pred --HHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhc----Ccch--hhhhchhhcccchHH--HHHHHHhHHhh-h
Q 045355 258 --SYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQY----TWSS--AVKRIPLDFLQGEKF--REAAFNYVRPL-L 326 (900)
Q Consensus 258 --~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~--~~~~l~l~~~~~~~~--~~a~~~~~~~~-l 326 (900)
..|..+..++. ...|+...+...++++.... +.+. ....++..-.....+ ++.+....... .
T Consensus 210 LkvFyl~lql~yy-------~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv 282 (629)
T KOG2300|consen 210 LKVFYLVLQLSYY-------LLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTV 282 (629)
T ss_pred HHHHHHHHHHHHH-------hcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHH
Confidence 12233333432 33566666666666554331 1110 000000000000000 01111110000 0
Q ss_pred hcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCch---hHHHHHHHHHHHHHHhCCHHHHHHHH
Q 045355 327 TKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPS---TLLWTLFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 327 ~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~---~~~~a~~~la~~y~~~g~~~~Al~~~ 403 (900)
..+.| .|-.+.+.+.-++.....+..+..+. ..|- .....+-.+..+-.-.|++.+|++.+
T Consensus 283 ~hsm~------------~gy~~~~~K~tDe~i~q~eklkq~d~----~srilsm~km~~LE~iv~c~lv~~~~~~al~~i 346 (629)
T KOG2300|consen 283 IHSMP------------AGYFKKAQKYTDEAIKQTEKLKQADL----MSRILSMFKMILLEHIVMCRLVRGDYVEALEEI 346 (629)
T ss_pred hhhhh------------hHHHHHHHHHHHHHHHHHhhcccccc----hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00000 01111122222222111111111110 0111 11113334556666799999999998
Q ss_pred HHHHHc---CCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-Ch--hHHHHHHHHHHHcCChHHHHHH
Q 045355 404 DEAIEH---TPT-------VIDLYSVKSRILKHAGDLAAAATLADEARCMDLA-DR--YVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 404 ~~al~~---~P~-------~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~-d~--~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
..+.+. .|+ .+.+++.+|.-...-|.++.|...|..|.++-.. |- +++..++..|++.|+-+.--++
T Consensus 347 ~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ 426 (629)
T KOG2300|consen 347 VDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKA 426 (629)
T ss_pred HHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHH
Confidence 887654 454 4567778888888889999999999999887433 32 8888899999999887777677
Q ss_pred HHHhcccCCcCCChhhhhHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 045355 471 AALFTKDGDQHNNLHDMQCM--WYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHS 532 (900)
Q Consensus 471 ~~~~~~~~~~~~~l~~~q~~--w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~ 532 (900)
+....-.+ ...+-.||. -+.+..|-..+.+|++.+|....++.++.- ..+|-+-.|.
T Consensus 427 ld~i~p~n---t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a 485 (629)
T KOG2300|consen 427 LDLIGPLN---TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTA 485 (629)
T ss_pred HHhcCCCC---CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHH
Confidence 66665432 122233443 235677888889999999999999998875 4556555554
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00018 Score=67.87 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=117.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLT-LKPNHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~ 163 (900)
....+.=+.+....-..+.+...|.. .-.+.|+......|++.+|...|++++. +..+++..+.+++.+.+..+++.+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33334444444555555555666654 3467788999999999999999998886 567788888999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 243 (900)
|...|+.+- +.+|. ...+...+.+++++...|++.+|...|+.++...|+ +......+..+.++|+..+|.
T Consensus 143 a~~tLe~l~---e~~pa-----~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 143 AQQTLEDLM---EYNPA-----FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHh---hcCCc-----cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 986665543 32221 234466778899999999999999999999998887 455666788899999998888
Q ss_pred HHHHHHHHh
Q 045355 244 ELYRALLSM 252 (900)
Q Consensus 244 ~~~~~al~~ 252 (900)
.-+..+.+.
T Consensus 214 aq~~~v~d~ 222 (251)
T COG4700 214 AQYVAVVDT 222 (251)
T ss_pred HHHHHHHHH
Confidence 777666543
No 195
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00081 Score=72.50 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhc--hhHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCE--HGEML 192 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~--~~~~~ 192 (900)
......++++.+..-+..-.+.+..+..+.+.+....+..++..|++..|.+.|.... +...+.. ...|+ ..-.|
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn--i~~~~g~-~~T~q~~~cif~ 286 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN--IHKEAGG-TITPQLSSCIFN 286 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc--cccccCc-cccchhhhheee
Confidence 3344556777777777777777777778888999999999999999999997664322 1111110 00122 22345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh---------cC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 193 LYKISLLEECGSFERALAEMHKKESK---------IV---------DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 193 ~~la~~~~~~g~~~~Al~~l~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
.++|.++++.|.|.-+..+|.+++.. .| ....+.++.|..|+..|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 78999999999999999999999851 11 2356889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHh
Q 045355 255 DNYSYYEGLQKCL 267 (900)
Q Consensus 255 ~~~~~~~~l~~~~ 267 (900)
.+|..|..++.|.
T Consensus 367 ~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 367 RNPRLWLRLAECC 379 (696)
T ss_pred cCcHHHHHHHHHH
Confidence 9999999999987
No 196
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.019 Score=63.23 Aligned_cols=244 Identities=12% Similarity=0.122 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH-HH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY-GL 85 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l-g~ 85 (900)
|-+-.-+...+..++..-+++....|++.+..+|..+.+|.......+...+|+.-..+|.+.+...-+ .+.|..+ -.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHH
Confidence 334445556666777778999999999999999999999988888888889999999999988874332 4455433 23
Q ss_pred HHHhccCHHHH----HHHHHHHHh---hCCCcHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHHhCCCCHH-HH
Q 045355 86 LYRSDREYREA----IKCYRNALR---IDPDNIEILRDLSLLQA---------QMRDLTGFVETRQQLLTLKPNHRM-NW 148 (900)
Q Consensus 86 ~~~~~g~~~eA----i~~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~-~~ 148 (900)
+....++...+ .+.|+-++. .++....+|...+..+. ...+.+.-...|++++..--.+.+ .|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 33334443332 233444433 34566667766665442 233566667788888865433322 22
Q ss_pred HH-------------HHHHHHHcCCHHHHHHHHHHHHhhhc---cCCC---C--CcchhchhHHHHHHHHHHHHcCCH--
Q 045355 149 IG-------------FAVSHHLNSNGSKAVEILEAYEGTLE---DDYP---P--DNERCEHGEMLLYKISLLEECGSF-- 205 (900)
Q Consensus 149 ~~-------------la~~~~~~g~~~~A~~~l~~~~~~l~---~~~~---~--~~~~~~~~~~~~~la~~~~~~g~~-- 205 (900)
.. .-.+-.....|..|..+.+.+....+ ...+ + ........+.|.++...-...+--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 21 11222334556667666555543322 1111 1 111122334444444333222211
Q ss_pred ------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHH
Q 045355 206 ------ERALAEMHKKESKIVDKLAYKEQEVSLLVKIGR--------------LEEAAELYRALLS 251 (900)
Q Consensus 206 ------~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~ 251 (900)
....-.+++++..-+-.+++|+..+..+...++ .+++..+|++++.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 122334566666666666666666555555554 4556666666654
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=4.8e-05 Score=77.38 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRDLSL 119 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~la~ 119 (900)
.|..+.-++..|+|.+|...|..-++..|++ +.+++.||.+++.+|+|++|...|..+++..|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999998876 5688999999999999999999999999988764 678999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLKPNHRMNWIG 150 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (900)
+...+|+.++|..+|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998776443
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.13 E-value=0.002 Score=67.78 Aligned_cols=262 Identities=14% Similarity=0.038 Sum_probs=186.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGE-TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
..+....-.|+|+.|.+-|+.++. +|+.-. .+..+-.-..+.|..+.|+.+.+.+-..-|.-+.++...-...+..|+
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 445556677999999999998875 443211 122222334567999999999999999999999988888888889999
Q ss_pred HHHHHHHHHHHHhh---CCCcHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 93 YREAIKCYRNALRI---DPDNIE-----ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 93 ~~eAi~~~~~al~~---~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
|+.|++..+..... .++-.. .+...+.. .-.-|...|.+.-..++++.|+...+-..-+..++..|+..++
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 99999998866543 333211 11111111 2234688899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHH---HhhhcCCHHHHHHHHHHHHHHcCCHHH
Q 045355 165 VEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHK---KESKIVDKLAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~---al~~~p~~~~~~~~la~~~~~~g~~~e 241 (900)
-.+|+..- +..|. ++ ++.+|....--+.++.-+++ ...+.|++.......+..-+.-|++..
T Consensus 283 ~~ilE~aW---K~ePH--------P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 283 SKILETAW---KAEPH--------PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred hhHHHHHH---hcCCC--------hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 97776644 33332 12 23333333333444555544 445689999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh
Q 045355 242 AAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV 301 (900)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 301 (900)
|..--+.+....|... ++..++.+-. ...||-.++...+-+.+. .|+++.+
T Consensus 348 ARa~Aeaa~r~~pres-~~lLlAdIee-------AetGDqg~vR~wlAqav~-APrdPaW 398 (531)
T COG3898 348 ARAKAEAAAREAPRES-AYLLLADIEE-------AETGDQGKVRQWLAQAVK-APRDPAW 398 (531)
T ss_pred HHHHHHHHhhhCchhh-HHHHHHHHHh-------hccCchHHHHHHHHHHhc-CCCCCcc
Confidence 9999999999988764 4445555541 446888899998888765 3444433
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.13 E-value=1.2e-05 Score=87.52 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=55.5
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVC---WHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
.+|+++++++++|.+|+.+|++++|+..|++++.++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367778888888888888888888888888888888887744 888888888888888888888888876
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00043 Score=69.39 Aligned_cols=222 Identities=13% Similarity=0.099 Sum_probs=162.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH
Q 045355 51 LTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130 (900)
Q Consensus 51 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (900)
+-++..|.|..++....+.-... ........+...|..+|.|..-+...... ......+.+.++.....-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHH
Confidence 45667888988888777655433 55556667788888889887766544332 123345667777777777777766
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHH
Q 045355 131 VETRQQLLTLKPN--HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERA 208 (900)
Q Consensus 131 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 208 (900)
+......+..... +......-+.++...|++++|++.+.. .+..++...-..++.++.+.+-|
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~---------------~~~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL---------------GENLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHHHHH
Confidence 6666555543322 223444557788889999999966554 12336777788899999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHH
Q 045355 209 LAEMHKKESKIVDKLAYKEQEVSLLVK----IGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDEL 284 (900)
Q Consensus 209 l~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A 284 (900)
...++++.+.+.+ ..+..+|..+.+ -+.+.+|.-+|++.-+..|..+....+.+.|. +..+++++|
T Consensus 157 ~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~--------l~~~~~eeA 226 (299)
T KOG3081|consen 157 EKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH--------LQLGRYEEA 226 (299)
T ss_pred HHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH--------HHhcCHHHH
Confidence 9999999877654 344455555554 35689999999999999999999999999998 778999999
Q ss_pred HHHHHHHHHhcCcchhh
Q 045355 285 DALYKSLAQQYTWSSAV 301 (900)
Q Consensus 285 ~~~~~~~~~~~p~~~~~ 301 (900)
..+++.++..+++.+..
T Consensus 227 e~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 227 ESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHhccCCCHHH
Confidence 99999999999887633
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0032 Score=62.92 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------CCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK-------------PNHR------MNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~~------~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
..++|...-.++..++.+++|..-+...-.++ |+.. ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34455555555566666666555444443332 2211 1233445666667777777643332
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
+...+ ..+..........+..++.+++-+ ..+.+.++.++..+|.|.-....+.+++
T Consensus 148 L~~~V-----------------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi 204 (366)
T KOG2796|consen 148 LKTVV-----------------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVI 204 (366)
T ss_pred HHHHH-----------------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 22111 111122222222244455554433 3466778888999999999999999999
Q ss_pred HhC-CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcC
Q 045355 251 SMN-PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKG 329 (900)
Q Consensus 251 ~~~-p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~ 329 (900)
+.+ |.++.....|+... ++.||.+.+..+|+...+....-
T Consensus 205 ~~~~e~~p~L~s~Lgr~~--------MQ~GD~k~a~~yf~~vek~~~kL------------------------------- 245 (366)
T KOG2796|consen 205 KYYPEQEPQLLSGLGRIS--------MQIGDIKTAEKYFQDVEKVTQKL------------------------------- 245 (366)
T ss_pred HhCCcccHHHHHHHHHHH--------HhcccHHHHHHHHHHHHHHHhhh-------------------------------
Confidence 988 66778888888876 67888888888887663211000
Q ss_pred CChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 045355 330 VPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH 409 (900)
Q Consensus 330 ~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~ 409 (900)
... .....+....+.+|.-.+++..|...+.+++..
T Consensus 246 -------------------------~~~-------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 246 -------------------------DGL-------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred -------------------------hcc-------------------chhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 000 000014456677777889999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 410 TPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 410 ~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
+|.++.+..++|.|+.-.|+..+|++.++.+.+.+|...
T Consensus 282 D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 282 DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999875
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.08 E-value=6.5e-05 Score=69.13 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH---HHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIE---ILR 115 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~---~~~ 115 (900)
.+..++..|...+..|+|++|++.|+......|.. ..+...+|.+|+..++|++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678888999999999999999999988877654 567788999999999999999999999999988764 578
Q ss_pred HHHHHHHHhcC---------------HHHHHHHHHHHHHhCCCCHH
Q 045355 116 DLSLLQAQMRD---------------LTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 116 ~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 146 (900)
..|.+++.+.. ...|...|++++...|++..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 88888887765 67777888888888777654
No 203
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.029 Score=61.06 Aligned_cols=251 Identities=14% Similarity=0.080 Sum_probs=142.3
Q ss_pred HHcCCHHHHHHHHHHHHhhhccCCCCCc---c--------------hhchhHHHHHHHHHH--HHcCCHHHHHHHHHHHh
Q 045355 156 HLNSNGSKAVEILEAYEGTLEDDYPPDN---E--------------RCEHGEMLLYKISLL--EECGSFERALAEMHKKE 216 (900)
Q Consensus 156 ~~~g~~~~A~~~l~~~~~~l~~~~~~~~---~--------------~~~~~~~~~~la~~~--~~~g~~~~Al~~l~~al 216 (900)
...|+...+...++++.+.+....++.. + ..+...++.++..+. .-.|-+++|.++-++++
T Consensus 223 ~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i 302 (629)
T KOG2300|consen 223 LLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAI 302 (629)
T ss_pred hcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3448877777777776665543322211 0 001223333333333 24577788888777776
Q ss_pred hhc------C-C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HHHHHHHHH-HhcccccCCCC
Q 045355 217 SKI------V-D-------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMN---PDN--YSYYEGLQK-CLGLYRDNGNY 276 (900)
Q Consensus 217 ~~~------p-~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~--~~~~~~l~~-~~~l~~~~~~~ 276 (900)
... + . ....+..+..+-.-.|++.+|++....+.+.. |.. ..+...... ++|++. .
T Consensus 303 ~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys----~ 378 (629)
T KOG2300|consen 303 KQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS----H 378 (629)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh----h
Confidence 541 1 1 13456677888888999999999888877653 441 111111111 111111 2
Q ss_pred CCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHH
Q 045355 277 SSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILE 356 (900)
Q Consensus 277 ~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~ 356 (900)
.-+.++.|...|..+.+.....+.. ...-.+++..|...++.+..-++++.
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~-----------------------------a~~nlnlAi~YL~~~~~ed~y~~ld~ 429 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQ-----------------------------AFCNLNLAISYLRIGDAEDLYKALDL 429 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHH-----------------------------HHHHHhHHHHHHHhccHHHHHHHHHh
Confidence 3566777777776665543322210 01123445555555554444444333
Q ss_pred HHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------chHHHHHHHHHHHHcCCH
Q 045355 357 LEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT------VIDLYSVKSRILKHAGDL 430 (900)
Q Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~------~~~~~~~la~i~~~~G~~ 430 (900)
. . +.... ..........++|..|...+..+++.+|...+.+.++.... ..-.+..+|.+....|+.
T Consensus 430 i----~--p~nt~--s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 430 I----G--PLNTN--SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred c----C--CCCCC--cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2 1 11000 00111122236788888999999999999999999987631 122456788999999999
Q ss_pred HHHHHHHHHHHhcCcCC
Q 045355 431 AAAATLADEARCMDLAD 447 (900)
Q Consensus 431 ~eA~~~~~~al~ldp~d 447 (900)
.++.+...-++++..+-
T Consensus 502 ~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 502 VESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHhccchHHHHHhcC
Confidence 99999999888874443
No 204
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.08 E-value=0.00033 Score=72.75 Aligned_cols=234 Identities=14% Similarity=0.051 Sum_probs=162.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------HHHHHHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPE-----HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------HVCWHVY 83 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l 83 (900)
.+..+-..-++.+++.+....+..... -+.+...+|..+..++.++++++.|+.+++....+ -.++..+
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 333333445666677766666653222 23566778999999999999999999999863332 2357889
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCC----c------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPD----N------IEILRDLSLLQAQMRDLTGFVETRQQLLTLK------PNHRMN 147 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~ 147 (900)
|.++....++++|+-...+|.++... + .-+++.++..+...|.+..|.++.+.+.++. +.....
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999999998876432 1 2357788888999999999999999887653 233445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHH-----HHHHHHHHhhhcCC-
Q 045355 148 WIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFER-----ALAEMHKKESKIVD- 221 (900)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----Al~~l~~al~~~p~- 221 (900)
...+|.+|...|+.+.|. ..|+++....... ..+....+++...+.++....-..+ |++.-.+++++...
T Consensus 249 ~~~~aDIyR~~gd~e~af---~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAF---RRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHhcccHhHHH---HHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 678899999999999988 6777666543211 1123445666666666655443333 77777777765332
Q ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 222 -----KLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 222 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
....+..++.+|..+|.-++-...+.++-+.
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 2456778899998888877777666665443
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.04 E-value=3.2e-05 Score=84.21 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=66.3
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 045355 72 NDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEI---LRDLSLLQAQMRDLTGFVETRQQLLTLK 141 (900)
Q Consensus 72 ~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 141 (900)
.+|+++..|+++|..|...|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|++++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999999999999855 9999999999999999999999999973
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=3.9e-05 Score=72.70 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC--
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR----------KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE-- 92 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 92 (900)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+.+.++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6778888888888899999988888887776533 4566666777777888888888888887776543
Q ss_pred ---------HHHHHHHHHHHHhhCCCcHHH
Q 045355 93 ---------YREAIKCYRNALRIDPDNIEI 113 (900)
Q Consensus 93 ---------~~eAi~~~~~al~~~p~~~~~ 113 (900)
|++|..+|++|...+|+|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 555666666666666665443
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00027 Score=66.77 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=124.0
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK-NDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
.-+.=+.+..+.-..+.+...|.. .-.+.+|..+...|++.||...|++++. +...++..+..++...+..+++.+|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 334446666666666666666763 4567889999999999999999999987 56677778888999999999999999
Q ss_pred HHHHHHHhhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 045355 98 KCYRNALRIDPD--NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 98 ~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l 175 (900)
..+++..+.+|. .++....++..+...|.+.+|...|+.++...|+ +.+...++..+..+|+..+|..-+....+.+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 999999998876 5667888899999999999999999999998885 5667778888899998888875444444443
Q ss_pred c
Q 045355 176 E 176 (900)
Q Consensus 176 ~ 176 (900)
.
T Consensus 224 ~ 224 (251)
T COG4700 224 K 224 (251)
T ss_pred H
Confidence 3
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.02 E-value=0.036 Score=59.95 Aligned_cols=427 Identities=12% Similarity=0.001 Sum_probs=214.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHG-----ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
+..+|..+-.++++.+|.++|.++.+...+.+ +.+..+-...+-+++.+.-...+-..-+..|.++......|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34567777788999999999999987655543 3444444445556677776666666666788888888889999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCC--------cH-----HH--HHHHHHHHHHhcCHHHHHHHHHHHHHhC-C----CCHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPD--------NI-----EI--LRDLSLLQAQMRDLTGFVETRQQLLTLK-P----NHRM 146 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~--------~~-----~~--~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~~ 146 (900)
..+.|.|.+|++.+...-..-.. |. +. -...|.+++..|.+.+++..+++++..- | -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 99999999999988765543111 11 11 2346788899999999999998887531 2 1222
Q ss_pred HH----HHHHHHHHHc-----------CCHHHHHHHHHHHH---------------------hhhccCCCCCcchhchhH
Q 045355 147 NW----IGFAVSHHLN-----------SNGSKAVEILEAYE---------------------GTLEDDYPPDNERCEHGE 190 (900)
Q Consensus 147 ~~----~~la~~~~~~-----------g~~~~A~~~l~~~~---------------------~~l~~~~~~~~~~~~~~~ 190 (900)
.+ ..++..|... .-|+.++-.+.... +.+-.-|... .|-...
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~--l~~~mq 246 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER--LPPLMQ 246 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh--ccHHHH
Confidence 22 2334443321 01222221111110 0000000000 011111
Q ss_pred HHHHHHHHH--------------HHcCCHHHHHHHHHHHhhh--cC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 191 MLLYKISLL--------------EECGSFERALAEMHKKESK--IV---DKLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 191 ~~~~la~~~--------------~~~g~~~~Al~~l~~al~~--~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
++....+-| .-..+.+++....+..... .+ .-......+-....+.++...|..++.-+..
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 111111111 0011223333333222111 11 1112222333344677888999998888888
Q ss_pred hCCCCHHHHHHHHH---HhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh----hhchhhcccchHHHHHHHHhHHh
Q 045355 252 MNPDNYSYYEGLQK---CLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV----KRIPLDFLQGEKFREAAFNYVRP 324 (900)
Q Consensus 252 ~~p~~~~~~~~l~~---~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~l~l~~~~~~~~~~a~~~~~~~ 324 (900)
.+|+.......+.. +..+..++ .....+...-+.+++.+...+-+.... .+.+-.+..+|+-+++.-..++.
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~D-D~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCED-DESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 88887522111110 00010000 001111222333333333333322211 22223333344433333333333
Q ss_pred hhhcC------CChhhhchhhhhcCCChHHHHHHHH--HHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCH
Q 045355 325 LLTKG------VPSLFSDLSPLYDQPGKADILEQLI--LELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQY 396 (900)
Q Consensus 325 ~l~~~------~p~~~~~L~~ly~~~~~~~~~~~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~ 396 (900)
++.-. ...++..++..|.+.-.......++ +.+.......+ ....+...--...=|..++..|+|
T Consensus 406 il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~-------i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 406 ILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP-------ITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-------ccccHHHHHHHHHHHHHHHhcccH
Confidence 32211 1122333333333222222222211 11211111111 111111111223345667789999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHH
Q 045355 397 DVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNS 452 (900)
Q Consensus 397 ~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~ 452 (900)
.++.-+-.=..+..| ++.+|..+|.++....+|++|..++.. +-|+++.-++
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHH
Confidence 999999999999999 999999999999999999999999874 5666554333
No 209
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.046 Score=60.39 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCh-hHHHHHHHHHHHcCChHHHHHH
Q 045355 396 YDVALSKIDEAIEHTP-TVIDLYSVKSRILKHAG---DLAAAATLADEARCMDLADR-YVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P-~~~~~~~~la~i~~~~G---~~~eA~~~~~~al~ldp~d~-~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
.+++..+|+++|+..- .+.-+|+.++.--...- ..+.-.+.+++++.+--.++ .+......+..|..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 7788888998887543 34445555555444333 37778888888888766665 5555566777788888888888
Q ss_pred HHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhh--------------
Q 045355 471 AALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLR-------------- 536 (900)
Q Consensus 471 ~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~r-------------- 536 (900)
+.+..+++...-+++.. ..-.=|+..|+..-|.+.|+-=+++|.+.++-...+..|.++
T Consensus 389 F~kaR~~~r~~hhVfVa-------~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVA-------AALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHhhccCCcchhhHH-------HHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 88777765544333331 111235667888888888888888887766644444333321
Q ss_pred --hcc-----HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Q 045355 537 --KMT-----LRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYI 571 (900)
Q Consensus 537 --k~~-----~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~ 571 (900)
+.. .+-|-.||.+|..+.+--.+.+--+....+|-
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 111 14566777777777766666666666555554
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.95 E-value=1.1e-05 Score=67.79 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC---CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKN----DI---KSHVCWHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p---~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
+.++..+|.+|..+|++++|+.+|++++.+ .+ ....++..+|.++...|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445556666666666666666666666543 11 12334556666666666666666666665543
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.7e-05 Score=73.25 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY 83 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 83 (900)
.+++....+-..|..++..+.|..|+..|.+++.++|..+..+...+.|++++.+++.+....++++.++|+....++.+
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 45666677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhh
Q 045355 84 GLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~ 106 (900)
|........|++||.++.++..+
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999655
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.93 E-value=2.5e-05 Score=65.48 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 380 LWTLFFLAQHYDRRGQYDVALSKIDEAIEH---TP----TVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 380 ~~a~~~la~~y~~~g~~~~Al~~~~~al~~---~P----~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
..++..+|.+|...|++++|+.+|++++++ .+ ..+.++..+|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 447899999999999999999999999965 22 23668999999999999999999999999875
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.89 E-value=0.00034 Score=62.08 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN----IEILRDLSLLQA 122 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~la~~~~ 122 (900)
-..|..+...|+.+.|++.|.+++.+-|..+.+|.+.+..++-+|+.++|++.+++++++..+. -+++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555543322 123455555555
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 045355 123 QMRDLTGFVETRQQLLTL 140 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~ 140 (900)
..|+.+.|...|+.+-++
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 555555555555554444
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.88 E-value=0.00064 Score=74.25 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=105.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY 93 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 93 (900)
.......+..+.++-++...++|+++|+.+++|..++.- ...-..+|..+++++++..... +.........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccch
Confidence 334566788999999999999999999999999887643 2344789999999998753221 1111111122221
Q ss_pred HHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 94 REAIKCYRNALRIDPD--NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN--HRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
-+. +...+. ...+.+.+|.+..++|+.++|++.++.+++..|. +.....++..++...+.|.++..+|.
T Consensus 247 ~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WEA-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhh-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111 111112 2345678999999999999999999999988775 45678899999999999999999988
Q ss_pred HHHh
Q 045355 170 AYEG 173 (900)
Q Consensus 170 ~~~~ 173 (900)
.|.+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 8864
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.87 E-value=0.00018 Score=68.32 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC--
Q 045355 59 KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE----------YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD-- 126 (900)
Q Consensus 59 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 126 (900)
++.|.+.++.....+|.+++.++..|..+..+.+ +++|+.-|+.|+.++|+...++..+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999988776533 5778888999999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 127 ---------LTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 127 ---------~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
|++|.++|+++...+|++...+..+-.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 788999999999999999876655543
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.85 E-value=0.00031 Score=62.27 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH----RMNWIGFAVSHHLN 158 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 158 (900)
.|......|+.+.|++.|.+++.+-|.++.+|.+.+..+.-.|+.++|++.+++++++..+. ..++...|.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555555555555555555555555543221 13344445555555
Q ss_pred CCHHHHH
Q 045355 159 SNGSKAV 165 (900)
Q Consensus 159 g~~~~A~ 165 (900)
|+-+.|.
T Consensus 129 g~dd~AR 135 (175)
T KOG4555|consen 129 GNDDAAR 135 (175)
T ss_pred CchHHHH
Confidence 5555554
No 217
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0037 Score=61.52 Aligned_cols=183 Identities=12% Similarity=0.121 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC----C--CcHHHHHHHHHHHHHhcCHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID----P--DNIEILRDLSLLQAQMRDLTG 129 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~~ 129 (900)
.+++++|.++|.++ |.+|...++|..|-.+|-++-... . +-...|...+.+|.. ++.++
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 34777777777665 344555555666655555554321 1 112334444555444 37777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc-CCHHHH
Q 045355 130 FVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC-GSFERA 208 (900)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A 208 (900)
|+.++++++++ |..+|++..|. ..+..+|.+|... .++++|
T Consensus 92 Av~cL~~aieI--------------yt~~Grf~~aA------------------------k~~~~iaEiyEsdl~d~eka 133 (288)
T KOG1586|consen 92 AVNCLEKAIEI--------------YTDMGRFTMAA------------------------KHHIEIAEIYESDLQDFEKA 133 (288)
T ss_pred HHHHHHHHHHH--------------HHhhhHHHHHH------------------------hhhhhHHHHHhhhHHHHHHH
Confidence 77777776654 45566666554 1233456666544 788888
Q ss_pred HHHHHHHhhhcCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHhcccccCCC
Q 045355 209 LAEMHKKESKIVD------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY-------SYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 209 l~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~l~~~~~~ 275 (900)
+.+|+++-+.... .-..+...+..-..+++|.+|+.+|+++....-++. .++..-+.|+
T Consensus 134 I~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh-------- 205 (288)
T KOG1586|consen 134 IAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH-------- 205 (288)
T ss_pred HHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh--------
Confidence 8888888664332 223556677777889999999999999988776664 3455556665
Q ss_pred CCCCcHHHHHHHHHHHHHhcCcch
Q 045355 276 YSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
+...|.-.+...+++..+.+|...
T Consensus 206 l~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCCccc
Confidence 445666677777778778888544
No 218
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.13 Score=60.67 Aligned_cols=189 Identities=12% Similarity=-0.016 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH-------
Q 045355 41 EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEI------- 113 (900)
Q Consensus 41 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~------- 113 (900)
+.+..|..+|.+....|...+|++.|-++ +++..|.....+..+.|.|++-++++..+-+...+ +.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45778999999999999999998888654 44556777777778888888888888766543211 111
Q ss_pred ---------------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 114 ---------------------LRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYE 172 (900)
Q Consensus 114 ---------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 172 (900)
.-..|.-++..|.|+.|.-.|. +...|..++..+..+|+|+.|. +..+
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV---D~aR 1244 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV---DAAR 1244 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH---HHhh
Confidence 1222333334444444444433 3456888899999999999888 4433
Q ss_pred hhhccCC-----------CC-------CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 045355 173 GTLEDDY-----------PP-------DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLV 234 (900)
Q Consensus 173 ~~l~~~~-----------~~-------~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~ 234 (900)
++-.... .. .-...-+.+-+-.+...|...|-+++-+..++.++.+..-....+..+|.+|.
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 3321100 00 00001234445566777788888888888888888777767777777777776
Q ss_pred HcCCHHHHHHHHH
Q 045355 235 KIGRLEEAAELYR 247 (900)
Q Consensus 235 ~~g~~~eA~~~~~ 247 (900)
+- ++++-.+.++
T Consensus 1325 ky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHLK 1336 (1666)
T ss_pred hc-CHHHHHHHHH
Confidence 54 3444444443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0022 Score=64.11 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh----C--CCcHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKND-IKSHVCWHVYGLLYRSDREYREAIKCYRNALRI----D--PDNIEILRD 116 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~----~--p~~~~~~~~ 116 (900)
.+.+.+..++.-.|.|.-.+..+.+.++.+ |..+.....+|.+..+.|+.+.|..+|+..-+. + ..+.-+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 356777888888999999999999999987 667888899999999999999999999955432 2 335567888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
.+.++.-.+++..|...|.+++..+|.++.+..+.|.++...|+...|++.++....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999966655433
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0026 Score=65.64 Aligned_cols=166 Identities=9% Similarity=-0.070 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-CCCc---HHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI-DPDN---IEILRDLSL 119 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~-~p~~---~~~~~~la~ 119 (900)
+-....+.++...|++.+|....++.+...|.+..++..--..++..|+...-...+++.+-. +|+. ..+.-.++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 444555667777888888888888888888888888877777888888888888888888766 5554 344555677
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
.+...|-|++|.+..+++++++|.+.-+....+.++...|++.++.+.+..-+...+.. + ...+.-|-..+..+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~--mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----W--MLASHNYWHTALFH 257 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----h--HHHhhhhHHHHHhh
Confidence 77888888888888888888888888888888888888888888885443322211100 0 11112233345555
Q ss_pred HHcCCHHHHHHHHHHH
Q 045355 200 EECGSFERALAEMHKK 215 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~a 215 (900)
.+.+.|+.|+++|++-
T Consensus 258 iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDRE 273 (491)
T ss_pred hcccchhHHHHHHHHH
Confidence 6666666666666543
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.013 Score=57.86 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHHHHHh----CC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH--
Q 045355 8 KDANLFKLIVKSYE-TKQYKKGLKAADAILKK----FP-E-HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV-- 78 (900)
Q Consensus 8 ~~~~l~~~a~~~~~-~g~~~~Al~~~~~~l~~----~p-~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-- 78 (900)
....++.+|...|+ .++|..|-..|-++-.. .. . -+.++...+.+| +.++..+|..++++++.+..+-..
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 34567777766665 48888888887777552 22 1 234555555554 556999999999999997554333
Q ss_pred ----HHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-
Q 045355 79 ----CWHVYGLLYRSD-REYREAIKCYRNALRIDPDN------IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM- 146 (900)
Q Consensus 79 ----~~~~lg~~~~~~-g~~~eAi~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 146 (900)
.+..+|.+|... .++++||.+|+++-+..... ...+...+..-.+.++|.+|+..|+++....-+++-
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 345789998876 89999999999998765432 234677788888999999999999999887665542
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 147 ------NWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 147 ------~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
.++.-|.++....+.-.+...|+.|...
T Consensus 191 Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 191 KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3445566666668888888777777654
No 222
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.22 Score=58.97 Aligned_cols=159 Identities=13% Similarity=0.048 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (900)
.+..+.|.++.++. +.+..|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45555555555443 34678888888888888888888888654 566778888888888888888888877
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 136 QLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 136 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
.+-+.- ..+..-..+..+|.+.++..+-.+ |.. . |++ .-.-..|.-++..|.|+.|.-.|..
T Consensus 1158 MaRkk~-~E~~id~eLi~AyAkt~rl~elE~----fi~----g-------pN~-A~i~~vGdrcf~~~~y~aAkl~y~~- 1219 (1666)
T KOG0985|consen 1158 MARKKV-REPYIDSELIFAYAKTNRLTELEE----FIA----G-------PNV-ANIQQVGDRCFEEKMYEAAKLLYSN- 1219 (1666)
T ss_pred HHHHhh-cCccchHHHHHHHHHhchHHHHHH----Hhc----C-------CCc-hhHHHHhHHHhhhhhhHHHHHHHHH-
Confidence 665532 122233455666777777766542 211 1 111 2234567777888888888777764
Q ss_pred hhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 216 ESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
..-|..++..+..+|+|..|...-+++
T Consensus 1220 -------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 -------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445678899999999999999887766
No 223
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.69 E-value=0.0076 Score=66.62 Aligned_cols=118 Identities=11% Similarity=-0.019 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 31 AADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS--HVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 31 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
.+-..++.+|.+...+.+-+......|+..+|..++..++-..|.. ......+|.++.+.|...+|--.+..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3344555666655444433333445688888888888887765543 34567788888888888888777777777666
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
....-++.++.++.+.+++......|..+.+.+|......
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 6555678888888888888888888888888777655443
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00018 Score=70.80 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=64.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
.-|..++.-++|..|+.+|.+++.++|..+..+.+.+.+++++.+|+.+....++++++.|+.....+.+|........|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhc
Q 045355 162 SKAVEILEAYEGTLE 176 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~ 176 (900)
++|+.+|........
T Consensus 95 ~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLR 109 (284)
T ss_pred cHHHHHHHHHHHHHh
Confidence 777766555443333
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0025 Score=65.51 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=110.9
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV-Y 83 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-l 83 (900)
+|+.+...+..+....+.|++.+|...|..++...|++.++...++.++...|+.+.|...+...-...... .++. .
T Consensus 130 ~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~ 207 (304)
T COG3118 130 LPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQ 207 (304)
T ss_pred cChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHH
Confidence 344566778888999999999999999999999999999999999999999999999998887643322221 1222 1
Q ss_pred --HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 045355 84 --GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN--HRMNWIGFAVSHHLNS 159 (900)
Q Consensus 84 --g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 159 (900)
...+.+.....+. ..+++.+..+|++.++-+.+|..+...|+.+.|.+.+-.+++.+-+ +..+...+-.++...|
T Consensus 208 a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 208 AQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 1233333333322 3355667789999999999999999999999999999988887643 3334444444444444
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0024 Score=68.09 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=106.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNC-MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
.......+.+..+.|..+|.++++..+.+.++|...|.+-+. .++.+.|..+|+.+++..|.+...|..+...+...++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 344444566779999999999987666678888888988666 5666669999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 93 YREAIKCYRNALRIDPDNI---EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
.+.|...|++++..-|... .+|......-...|+++....+.+++.+..|....
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999998877655 57888888888999999999999999998887443
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.57 E-value=0.017 Score=66.11 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=134.9
Q ss_pred CChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhH-HH-HHHHHHHHHH----HhCCHHHHHHHH
Q 045355 330 VPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTL-LW-TLFFLAQHYD----RRGQYDVALSKI 403 (900)
Q Consensus 330 ~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~-a~~~la~~y~----~~g~~~~Al~~~ 403 (900)
.|+.+..+..+..-.++.+...+.+....+.- ....|-.. .. .|+.....+. ...+.+.|.+.+
T Consensus 187 LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~----------~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 187 LPPKVLKLLSFVGFSGDRELGLRLLWEASKSE----------NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccC----------CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 56677777777666677666666555442211 11112111 11 1222111111 245788999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh----hHHHHHHHHHHHcCChHHHHHHHHHhccc-C
Q 045355 404 DEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR----YVNSECVKRMLQADQVSLAEKTAALFTKD-G 478 (900)
Q Consensus 404 ~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~----~l~~~~a~~~l~~g~~eeA~~~~~~~~~~-~ 478 (900)
+...+..|+.+-..+..|+++...|+.++|++.|++++.....-+ ......++.++-..++++|.+.+....+. .
T Consensus 257 ~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 257 EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999885433333 44455677788899999999998877763 3
Q ss_pred CcCCChhhhhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhc
Q 045355 479 DQHNNLHDMQCMWYELASGESYFRQGDL-------GRALKKFLAVEKHYADITEDQFDFHSYCLRKM 538 (900)
Q Consensus 479 ~~~~~l~~~q~~w~~~~lg~~y~r~g~~-------~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~ 538 (900)
.. ..+|.+..|-+|...|+. ++|.+.|.+|......+.-.+.-+-.|+.||.
T Consensus 337 WS--------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~ 395 (468)
T PF10300_consen 337 WS--------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKA 395 (468)
T ss_pred cH--------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Confidence 22 234567889999999998 99999999998888776556777778888883
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00016 Score=52.88 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
+|..+|..|...|++++|+++|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444455555555555555444444444444443
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0022 Score=66.17 Aligned_cols=156 Identities=12% Similarity=-0.012 Sum_probs=126.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCcH---HHHHHHHHHHHhc
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN-DIKSH---VCWHVYGLLYRSD 90 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~---~~~~~lg~~~~~~ 90 (900)
.+...+..|++.+|-...+++|+.+|.+--++..--..++.+|+...-...+++.+.. +++.+ .+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3445677889999999999999999999988888888999999999999999999887 66553 3345567778899
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN----HRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+--..-.. -...|...|..+...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999887654322111 11235566778888899999996
Q ss_pred HHHH
Q 045355 167 ILEA 170 (900)
Q Consensus 167 ~l~~ 170 (900)
+++.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 6543
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.50 E-value=0.00018 Score=52.57 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
+++..+|..|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888887775
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.0048 Score=66.85 Aligned_cols=174 Identities=19% Similarity=0.169 Sum_probs=116.2
Q ss_pred hhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHH---hCCHHHHHHHHHH-HH
Q 045355 332 SLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDR---RGQYDVALSKIDE-AI 407 (900)
Q Consensus 332 ~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~---~g~~~~Al~~~~~-al 407 (900)
....++--.|.+..+.+...++++.....- ... ....+ . +.+..|.++.+ .|+.++|+..+.. ..
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p----~~~---~~~~~--~--i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALP----TCD---VANQH--N--IKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccc---hhcch--H--HHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 444455555667777666666666663221 110 11111 1 45677788888 9999999999999 55
Q ss_pred HcCCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCC-hHHH---HHHH---
Q 045355 408 EHTPTVIDLYSVKSRILKHA---------GDLAAAATLADEARCMDLADRYVNSECVKRMLQADQ-VSLA---EKTA--- 471 (900)
Q Consensus 408 ~~~P~~~~~~~~la~i~~~~---------G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~-~eeA---~~~~--- 471 (900)
...+.+++.+...|+||+.. ...++|+.+|.++.+++| +.|.-..++.++...|. .+.. .++.
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKL 289 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 56678999999999999753 357899999999999995 44333334445555554 2222 2222
Q ss_pred -HHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 045355 472 -ALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYA 521 (900)
Q Consensus 472 -~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~ 521 (900)
.+..+.+ .+..++..|..-.++++..-.|++++|...++++.+..+
T Consensus 290 ~~llg~kg----~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 290 SSLLGRKG----SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHhhc----cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 2222222 334467789888999999999999999999988777643
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.47 E-value=0.00024 Score=77.26 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
+-.++...+..+.|+.|+..|.++++++|+.+..+..++..+...+++..|+.-+.++++.+|....+|+..|......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 92 EYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
.+.+|...|+....+.|+++.+...+..+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888888888888888877766654
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.024 Score=56.40 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=96.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHhhC-----CCcHHHHHHHH
Q 045355 50 GLTLNCMDRKSEAYELVRLGVKNDIKSH------VCWHVYGLLYRSDREYREAIKCYRNALRID-----PDNIEILRDLS 118 (900)
Q Consensus 50 g~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAi~~~~~al~~~-----p~~~~~~~~la 118 (900)
+.++....++++|...+.++++-..++. .++-..|.+......+.|+...|++|..+. |+....-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444445555555555555554322221 123334445555555555555555555432 22222222333
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhhccCCCCCcchhchhHH
Q 045355 119 LLQAQMRDLTGFVETRQQLLTLKPNHR------MNWIGFAVSHHLNSNGSKAVEILEAYE-GTLEDDYPPDNERCEHGEM 191 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~l~~~~-~~l~~~~~~~~~~~~~~~~ 191 (900)
--....-+++.|+..|++++.+-.... +.+-..+.++.+...+.+|-..+..-. -....... +.....
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-----~~~~k~ 192 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-----NSQCKA 192 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-----ccHHHH
Confidence 333444556666666666655422211 223344556666666666553222111 11111100 122233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESK----IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY 257 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 257 (900)
+.....++.-..+|..|..+++...++ .+++.....++-..| ..|+.++...++..-.-.+-++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp~~r~MDne 261 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSPTVRNMDNE 261 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcChHhhhhhHH
Confidence 444445555556777777777775443 344555555555443 55777777766655554444443
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.031 Score=55.61 Aligned_cols=198 Identities=14% Similarity=0.175 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNI------EILRDLSLLQAQMRDLTGFVETRQQLLTLK-----PNHRMN 147 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 147 (900)
.|..-+.+|+..++|++|..++.+|.+-..+|. .++-..+.+...+..+.++...++++..+. |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 355566788889999999999999986554432 345566777778889999999999988753 443333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh------cCC
Q 045355 148 WIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK------IVD 221 (900)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~------~p~ 221 (900)
-...+--....-++++|+++++.-...+..+.. ...-.+.+...++++....++.+|-..+.+-... .++
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr----~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDR----DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch----HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 444455556678889999666655555543321 1233466777888999999999988777664322 344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHH
Q 045355 222 KLAYKEQEVSLLVKIGRLEEAAELYRALLSMN----PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYK 289 (900)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~ 289 (900)
.-..+.....+++-..+|..|..+|+..-++. |++.....+|...| ..||.+....++.
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay---------d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY---------DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh---------ccCCHHHHHHHHc
Confidence 44555566666777789999999999977653 56666666666665 4788887776654
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.003 Score=67.36 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ-MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+... .++.+.|...|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666666666667777777777775555566777777777555 4455557777777777777777777777777777
Q ss_pred cCCHHHHHHHHH
Q 045355 158 NSNGSKAVEILE 169 (900)
Q Consensus 158 ~g~~~~A~~~l~ 169 (900)
.|+.+.|..+++
T Consensus 83 ~~d~~~aR~lfe 94 (280)
T PF05843_consen 83 LNDINNARALFE 94 (280)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCcHHHHHHHHH
Confidence 777766664433
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.02 Score=57.54 Aligned_cols=235 Identities=14% Similarity=0.111 Sum_probs=165.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH-HHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD-RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR-EAIKC 99 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-eAi~~ 99 (900)
...-.+|+.+-..++..+|.+-.+|...-.++..++ +..+-++++.+.+..+|++..+|+..-.+....|++. .-+..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 356688999999999999999999998888888775 6788899999999999999999999999999999988 78889
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHH--HHHHHHHhhhc
Q 045355 100 YRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN-SNGSKAV--EILEAYEGTLE 176 (900)
Q Consensus 100 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~--~~l~~~~~~l~ 176 (900)
.+.++..+..|..+|...--+....++|+.-+.+...+++.+--+-.+|...-.+.... |-.+.+. .-+....+.+.
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~ 215 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKIL 215 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877777777554333332 2222121 11233334444
Q ss_pred cCCCCCcchhchhHHHHHHHHHHHH-cC--CHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHH------HcCCHH---HHH
Q 045355 177 DDYPPDNERCEHGEMLLYKISLLEE-CG--SFERALAEMHKKE-SKIVDKLAYKEQEVSLLV------KIGRLE---EAA 243 (900)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~la~~~~~-~g--~~~~Al~~l~~al-~~~p~~~~~~~~la~~~~------~~g~~~---eA~ 243 (900)
.. |.+..+|.++.-++.. .| .+........... ......+..+-.+..+|. ..+.-+ +|.
T Consensus 216 ~v-------P~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~ 288 (318)
T KOG0530|consen 216 LV-------PNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAV 288 (318)
T ss_pred hC-------CCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 43 4455688888888875 44 2344444444443 222233444444555542 222223 466
Q ss_pred HHHHHHH-HhCCCCHHHHHHH
Q 045355 244 ELYRALL-SMNPDNYSYYEGL 263 (900)
Q Consensus 244 ~~~~~al-~~~p~~~~~~~~l 263 (900)
..|+.+- +.+|-...+|.-.
T Consensus 289 ~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 289 KLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHhhccCcHHHHHHHHH
Confidence 6666554 5666655555543
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.053 Score=58.99 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---ccCHHHHHHHHHH-HHhhCCCcHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKN----DIKSHVCWHVYGLLYRS---DREYREAIKCYRN-ALRIDPDNIEI 113 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eAi~~~~~-al~~~p~~~~~ 113 (900)
++++...+-.+|....+|+.-+.+++..-.. -++.+...+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3566777778899999999999999877665 45566777888999888 9999999999999 44556778888
Q ss_pred HHHHHHHHHH---------hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 114 LRDLSLLQAQ---------MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 114 ~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
+..+|.+|-. ...+++|+..|.++.+++|+. ..-++++.++...|...+...-+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~-------------- 284 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRK-------------- 284 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHH--------------
Confidence 8888888744 235788999999999999654 3445666666666654333211111
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
+...++..+.+.|..+ .-.+.+..-.++.+..-.|++++|+..+++++...|..+..-..+.
T Consensus 285 ------i~~~l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ 346 (374)
T PF13281_consen 285 ------IGVKLSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLE 346 (374)
T ss_pred ------HHHHHHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHH
Confidence 1112222222333211 1123334455677777788888888888888888877765444433
Q ss_pred H
Q 045355 265 K 265 (900)
Q Consensus 265 ~ 265 (900)
.
T Consensus 347 n 347 (374)
T PF13281_consen 347 N 347 (374)
T ss_pred H
Confidence 3
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.33 E-value=0.0002 Score=48.81 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=30.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 045355 402 KIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAA 434 (900)
Q Consensus 402 ~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~ 434 (900)
+|+++|+++|+++++|+.+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.32 E-value=0.027 Score=61.94 Aligned_cols=227 Identities=13% Similarity=0.112 Sum_probs=141.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhh
Q 045355 228 QEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLD 307 (900)
Q Consensus 228 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~ 307 (900)
.+..-..+..+.+.-++.-+++++++|+...+|..|+.-. .....++..+|+++++.....-..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe----------A~Ti~Eae~l~rqAvkAgE~~lg~------ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE----------ASTIVEAEELLRQAVKAGEASLGK------ 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc----------ccCHHHHHHHHHHHHHHHHHhhch------
Confidence 4444556778888999999999999999999998886532 344678888888876542211100
Q ss_pred cccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHH
Q 045355 308 FLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLA 387 (900)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la 387 (900)
..+.+. . ..+.+............+...+|
T Consensus 237 ----s~~~~~--------------------------~--------------------g~~~e~~~~Rdt~~~~y~KrRLA 266 (539)
T PF04184_consen 237 ----SQFLQH--------------------------H--------------------GHFWEAWHRRDTNVLVYAKRRLA 266 (539)
T ss_pred ----hhhhhc--------------------------c--------------------cchhhhhhccccchhhhhHHHHH
Confidence 000000 0 00000000111122233667899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCChhHHHHHHHHHHHc-CC
Q 045355 388 QHYDRRGQYDVALSKIDEAIEHTPT--VIDLYSVKSRILKHAGDLAAAATLADEARCMD-LADRYVNSECVKRMLQA-DQ 463 (900)
Q Consensus 388 ~~y~~~g~~~~Al~~~~~al~~~P~--~~~~~~~la~i~~~~G~~~eA~~~~~~al~ld-p~d~~l~~~~a~~~l~~-g~ 463 (900)
.+..+.|+.++|++.+...++..|. +..++.++..++..++.+.++...+.+--++. |+...+..-.+.+-.|. ++
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998884 56789999999999999999999999864432 34444444444433332 21
Q ss_pred ---------------hHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhh
Q 045355 464 ---------------VSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 464 ---------------~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~ 524 (900)
-..|.+.+....+ ++.....+.+|..+- .--+-+.+.|+ .+|+.+----+.|+...+
T Consensus 347 ~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li---lPPehilkrGD-SEAiaYAf~hL~hWk~ve 419 (539)
T PF04184_consen 347 KFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI---LPPEHILKRGD-SEAIAYAFFHLQHWKRVE 419 (539)
T ss_pred ccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC---CChHHhcCCCc-HHHHHHHHHHHHHHhcCH
Confidence 1123455555444 444444444444331 11344567776 888887766666665543
No 240
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.31 E-value=0.026 Score=62.57 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 045355 64 ELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI--EILRDLSLLQAQMRDLTGFVETRQQLLTLK 141 (900)
Q Consensus 64 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 141 (900)
.++..+++..|.+...+..-+..++..|+..+|..|+..++-..|... .++..+|.++.++|...+|--.+..++.-.
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 445667777887776666666677889999999999999998877643 468899999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 142 PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 142 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
|.....++.++.++..+|.+.... ..|..+.+.++
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~---~~ydha~k~~p 314 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSV---LCYDHALQARP 314 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhh---hhhhhhhccCc
Confidence 887788999999999999888666 55555555443
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0059 Score=60.47 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--------hCCCCHH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILK--------KFPEHGE----------TLSMKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~--------~~p~~~~----------~~~~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
.+-..|..+|..|+|++|...|..++. ..|..++ .+.+.+.|+...|++-++++.....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 456778888888888888887777654 1333332 3344445555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+|.+..+++..|..+...-+..+|...|.++++++|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 5555555555555555555555555555555555554
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0021 Score=63.60 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCcH----------HHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DIKSH----------VCWHVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
.++...|.-++..|++.+|...|+.|+.. .|..+ ..+.++..|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777888888889998888888888642 34333 2456777888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 106 IDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
..|.|..+++..|.+....=+..+|...+.++++++|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 88888888888888888888888888888888888876443
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00031 Score=47.90 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=12.1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcCHHHH
Q 045355 101 RNALRIDPDNIEILRDLSLLQAQMRDLTGF 130 (900)
Q Consensus 101 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (900)
+++|+++|+++.+|+.+|.+|...|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444444444444333
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.22 E-value=0.089 Score=58.26 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=106.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhccCCC-
Q 045355 107 DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP----NHRMNWIGFAVSHHLNSNGSKAVEILEAYEG-TLEDDYP- 180 (900)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-~l~~~~~- 180 (900)
.......|...+.+....|.++.|...+.++....+ ..+...+..+..+...|+..+|+..+..+.. .+.....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345566788889999999999999999988887552 2456777788888999999999977766655 2221100
Q ss_pred ----------------------CCcchhchhHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 045355 181 ----------------------PDNERCEHGEMLLYKISLLEEC------GSFERALAEMHKKESKIVDKLAYKEQEVSL 232 (900)
Q Consensus 181 ----------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~Al~~l~~al~~~p~~~~~~~~la~~ 232 (900)
........+.+++.+|...... +..++++..|..+.+..|.....|..+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111234567778888888777 889999999999999999999999988887
Q ss_pred HHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 045355 233 LVKIGRL-----------------EEAAELYRALLSMNPD 255 (900)
Q Consensus 233 ~~~~g~~-----------------~eA~~~~~~al~~~p~ 255 (900)
+...=.. ..|+..|-+++..++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7654221 2355666666666555
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.21 E-value=0.00061 Score=46.54 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 246
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.14 E-value=0.00085 Score=73.10 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
-..+...+.-+.++.|+..|.++++++|+.+..+-..+..+...++|..|+..+.++++.+|....+|+..|...+..+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
+.+|...|+....+.|+.+.+...+..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999999999876665444
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.044 Score=56.59 Aligned_cols=153 Identities=17% Similarity=0.091 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-HHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI-EILRDLSLL 120 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~~~la~~ 120 (900)
..+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....+.. ..+.....+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3445566777888999999999999999999999999999999999999999999988765322211111 111112233
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
+.+.....+. ..+++-+..+|++.+..+.+|..++..|+.++|.+. +...+..+.. .+...+.-.+..++.
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~---Ll~~l~~d~~-----~~d~~~Rk~lle~f~ 283 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH---LLALLRRDRG-----FEDGEARKTLLELFE 283 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhccc-----ccCcHHHHHHHHHHH
Confidence 4444433332 345666778999999999999999999999999944 4444443322 233344444444554
Q ss_pred HcC
Q 045355 201 ECG 203 (900)
Q Consensus 201 ~~g 203 (900)
..|
T Consensus 284 ~~g 286 (304)
T COG3118 284 AFG 286 (304)
T ss_pred hcC
Confidence 444
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.12 E-value=0.76 Score=52.17 Aligned_cols=354 Identities=14% Similarity=0.078 Sum_probs=213.8
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHhccCHHHHHHHHHH
Q 045355 24 QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL-LYRSDREYREAIKCYRN 102 (900)
Q Consensus 24 ~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~eAi~~~~~ 102 (900)
..+.+...|+..|..+|.....|...|..-.+.|..+.+.+.|++++.--|-+...|..+-. +--..|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33566778888888899988888889999999999999999999999988888888755443 33355677777777888
Q ss_pred HHhhCCCcH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHH-HHH-
Q 045355 103 ALRIDPDNI---EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR----------------------MNWIGFA-VSH- 155 (900)
Q Consensus 103 al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~~~~~la-~~~- 155 (900)
|......+. ..|.........++++..-...|++.++.--... +-...+. .+.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~ 219 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE 219 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh
Confidence 876654322 2343333333444555555555555444210000 0000000 000
Q ss_pred ----------------------HHcCCHHHHHHHHH---------------------HHHhhhccCCCCCc-chhchhHH
Q 045355 156 ----------------------HLNSNGSKAVEILE---------------------AYEGTLEDDYPPDN-ERCEHGEM 191 (900)
Q Consensus 156 ----------------------~~~g~~~~A~~~l~---------------------~~~~~l~~~~~~~~-~~~~~~~~ 191 (900)
...+.++++...+. .++..+........ -.+.....
T Consensus 220 ~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~n 299 (577)
T KOG1258|consen 220 RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKN 299 (577)
T ss_pred hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHH
Confidence 00011122221111 11112211100000 01334566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhccc
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN-PDNYSYYEGLQKCLGLY 270 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~l~ 270 (900)
|..........|+++...-.+++++--+.....+|...+......|+.+-|...+.++.+.. |..+.....-+..-
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--- 376 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--- 376 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH---
Confidence 77777788899999999999999998888889999999999999999999999999988876 44454444444433
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHhcCcchhh--hhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHH
Q 045355 271 RDNGNYSSGEIDELDALYKSLAQQYTWSSAV--KRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKAD 348 (900)
Q Consensus 271 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~ 348 (900)
-..|++..|..+++.+.+..|+.... +.+.+.+..+.. ..+..
T Consensus 377 -----e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~-~~~~~----------------------------- 421 (577)
T KOG1258|consen 377 -----ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL-EDANY----------------------------- 421 (577)
T ss_pred -----HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch-hhhhH-----------------------------
Confidence 33689999999999999988765533 222222221111 11100
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 045355 349 ILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQH-YDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHA 427 (900)
Q Consensus 349 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~-y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~ 427 (900)
...+...... ...++......+...+.. +.-.++.+.|...+.+++++.|.+...+..+-++....
T Consensus 422 -----~~~l~s~~~~--------~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 422 -----KNELYSSIYE--------GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred -----HHHHHHHhcc--------cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 0001111100 111111111122333332 34478999999999999999999999999888887766
Q ss_pred C
Q 045355 428 G 428 (900)
Q Consensus 428 G 428 (900)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.12 E-value=0.00091 Score=45.60 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Q 045355 415 DLYSVKSRILKHAGDLAAAATLADEARCMDLAD 447 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d 447 (900)
++++.+|.++..+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 445555666666666666666666666555543
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.12 E-value=0.001 Score=45.34 Aligned_cols=33 Identities=36% Similarity=0.692 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~ 110 (900)
.+|+.+|.++...|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 355666666666666666666666666666653
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.12 E-value=0.0007 Score=46.25 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 415 DLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 252
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.11 E-value=1.1 Score=53.68 Aligned_cols=277 Identities=10% Similarity=0.026 Sum_probs=171.5
Q ss_pred CCChHH--HHHHHHHHHHH-hhccHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 045355 4 SLPSKD--ANLFKLIVKSY-ETKQYKKGLKAADAILKKFP--EHG----ETLSMKGLTLNCMDRKSEAYELVRLGVKNDI 74 (900)
Q Consensus 4 ~l~~~~--~~l~~~a~~~~-~~g~~~~Al~~~~~~l~~~p--~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 74 (900)
.+||.. ...++.|..++ +..+++.|...+++++.+.. +.. .+.+.++.++...+... |...+++.+....
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 355544 34567888888 67999999999999987653 332 24567788888888887 9999999998533
Q ss_pred C---cHHHH--HHH-HHHHHhccCHHHHHHHHHHHHhhC--CCcHHH----HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 045355 75 K---SHVCW--HVY-GLLYRSDREYREAIKCYRNALRID--PDNIEI----LRDLSLLQAQMRDLTGFVETRQQLLTLKP 142 (900)
Q Consensus 75 ~---~~~~~--~~l-g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p 142 (900)
. .+..| ..+ ...+...+++..|+..++...... +.++.+ ....+.+....+..+++++..+++.....
T Consensus 131 ~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~ 210 (608)
T PF10345_consen 131 TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR 210 (608)
T ss_pred ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 2 22222 112 333333489999999999988765 344443 23345566677878888888887744221
Q ss_pred ----------CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhhccCCCCC-------c-----c--------------
Q 045355 143 ----------NHRMNWIGFAVS--HHLNSNGSKAVEILEAYEGTLEDDYPPD-------N-----E-------------- 184 (900)
Q Consensus 143 ----------~~~~~~~~la~~--~~~~g~~~~A~~~l~~~~~~l~~~~~~~-------~-----~-------------- 184 (900)
....+|..+-.+ ....|++..+...+..+...+....... + .
T Consensus 211 ~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~ 290 (608)
T PF10345_consen 211 SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLV 290 (608)
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeE
Confidence 123445544433 4456888788777666655443221110 0 0
Q ss_pred ----hhch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH--------------------------HHHHHHHHHH
Q 045355 185 ----RCEH--GEMLLYKISLLEECGSFERALAEMHKKESKIVDK--------------------------LAYKEQEVSL 232 (900)
Q Consensus 185 ----~~~~--~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~--------------------------~~~~~~la~~ 232 (900)
..+. .-+++.-|......|..++|.++++++++...+. ....+..+.+
T Consensus 291 f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~ 370 (608)
T PF10345_consen 291 FSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWC 370 (608)
T ss_pred EeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0011 1122233444556666667777777766531110 1234556677
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHH
Q 045355 233 LVKIGRLEEAAELYRALLSMN---PD------NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYK 289 (900)
Q Consensus 233 ~~~~g~~~eA~~~~~~al~~~---p~------~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~ 289 (900)
..-.|++..|......+.... |. .+..++..|..+ ...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~--------q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYY--------QSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHH--------HHcCCHHHHHHHHh
Confidence 778899999999988877653 32 234444555544 44799999999998
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.06 E-value=0.85 Score=51.75 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEH-TPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQ 460 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~-~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~ 460 (900)
.|...+......|+.+-|-..+..+.+. .|+.+.+++.-+.+-...|++..|...++...+--|+...+-..-+....+
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR 412 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH
Confidence 4566667777779999999888887764 578888999999999999999999999999988778777666666666778
Q ss_pred cCChHHHH---HHHHHhccc--CCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 045355 461 ADQVSLAE---KTAALFTKD--GDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADI 523 (900)
Q Consensus 461 ~g~~eeA~---~~~~~~~~~--~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~ 523 (900)
.|+.+.+. ++.+....+ ..........|-.|+ .+.-.++.+.|...+.++..+.+..
T Consensus 413 ~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~------~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 413 KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL------RYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH------HHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 88888888 444433332 111111222222222 2333577888888888887776543
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.03 E-value=0.031 Score=64.11 Aligned_cols=149 Identities=17% Similarity=0.038 Sum_probs=112.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HH----hCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLT--------LN----CMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~--------~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
-.|+-+.++..+.++.+ .++--..+..+... .. .....+.|.+++.......|++.......|.++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46899999999999876 33221111111111 11 2346788999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCH--
Q 045355 89 SDREYREAIKCYRNALRIDPDNI----EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR-MNWIGFAVSHHLNSNG-- 161 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~-- 161 (900)
..|+.++|+.+|++++.....-. -.++.++.++..+++|++|..++.++.+.+.-.. ...+..|.++...|+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 99999999999999985443322 3478999999999999999999999999765543 3455668888888988
Q ss_pred -----HHHHHHHHH
Q 045355 162 -----SKAVEILEA 170 (900)
Q Consensus 162 -----~~A~~~l~~ 170 (900)
++|...+..
T Consensus 359 ~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 359 AKEHKKEAEELFRK 372 (468)
T ss_pred hhhhHHHHHHHHHH
Confidence 566544443
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.99 E-value=0.15 Score=56.47 Aligned_cols=241 Identities=14% Similarity=0.053 Sum_probs=146.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHH
Q 045355 16 IVKSYETKQYKKGLKAADAILKKFP-EHGETLSMKGLTLNCMDRKSEAYELVRLGVKND--------IKSHVCWHVYGLL 86 (900)
Q Consensus 16 a~~~~~~g~~~~Al~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~lg~~ 86 (900)
+.+.+..|+|+. +...+...+ +.++..+..+......|+++++..+++++...- +.+....+..-.-
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456778899988 334443333 344677778888889999999999998887631 1121111222222
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCc----HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Q 045355 87 YRSDREYREAIKCYRNALRIDPDN----IEILRDLSL-LQAQMRDLTGFVETRQQLLT---LKPNHRMNWIGFAVSHHLN 158 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~la~-~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~ 158 (900)
+......++++......... +.. ...|...-. +.-....++.-+....-++. ........|..++.+....
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 23344445555544222110 111 111211111 11111122222222223332 2345567899999999999
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-C-----------------
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI-V----------------- 220 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~-p----------------- 220 (900)
|+++.|...+..+....... . ...+.+.+..+.++...|+..+|+..++..+... .
T Consensus 160 g~~~~A~~~l~~~~~~~~~~---~---~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSS---E---SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred CCcHHHHHHHHHHhccCCcc---c---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 99999996666544322111 0 1144788889999999999999999998877610 0
Q ss_pred ----------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 221 ----------------DKLAYKEQEVSLLVKI------GRLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 221 ----------------~~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
....++..+|...... +..+++...|..+++.+|.....|..++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 234 SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 1134566677777777 8889999999999999999999999888776
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.94 E-value=0.86 Score=49.81 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHH
Q 045355 649 VEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHL 697 (900)
Q Consensus 649 ~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~ 697 (900)
..+.+.++.-+...+.+.+| ++.++.|.|=+.+-.+.|..|..++...
T Consensus 474 sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45789999999999999999 9999999999999999999999999876
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.12 Score=52.13 Aligned_cols=204 Identities=11% Similarity=0.125 Sum_probs=141.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHH-HHH
Q 045355 54 NCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR-EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT-GFV 131 (900)
Q Consensus 54 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 131 (900)
....+-..|+.+-..++.++|.+..+|+..-.++..++ +..+-++++...+.-+|.|.++|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 33445567788888999999999999988888877654 5678889999999999999999999999999999888 778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH-cC-----CH
Q 045355 132 ETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE-CG-----SF 205 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~-~g-----~~ 205 (900)
+..+.++..+..+..+|...-.+....+.++.-+..... .++.+.- +..+|...--+... .| ..
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~---Lle~Di~-------NNSAWN~Ryfvi~~~~~~~~~~~l 203 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE---LLEEDIR-------NNSAWNQRYFVITNTKGVISKAEL 203 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH---HHHHhhh-------ccchhheeeEEEEeccCCccHHHH
Confidence 899999999999999999998888888889888744433 3443321 11233222111111 11 23
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Q 045355 206 ERALAEMHKKESKIVDKLAYKEQEVSLLVK-IG--RLEEAAELYRALL-SMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 206 ~~Al~~l~~al~~~p~~~~~~~~la~~~~~-~g--~~~eA~~~~~~al-~~~p~~~~~~~~l~~~~ 267 (900)
+.-+.+....+...|++..+|..+..++.. .| .+..-......++ .....++..+.-+...+
T Consensus 204 e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 204 ERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 445666777888999999999988888876 44 1333344444444 22333444444444443
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.87 E-value=0.19 Score=53.63 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=84.4
Q ss_pred HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhc----C------C----
Q 045355 157 LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG-SFERALAEMHKKESKI----V------D---- 221 (900)
Q Consensus 157 ~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~Al~~l~~al~~~----p------~---- 221 (900)
..|+.+.|...+...........+ ......+..+++.|......+ +++.|...++++.+.. . +
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~--~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDP--DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCc--HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 456666666555544443321111 111345677888888888999 9999999999987762 1 1
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcC
Q 045355 222 KLAYKEQEVSLLVKIGRLE---EAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYT 296 (900)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p 296 (900)
...++..++.+|...+.++ +|..+.+.+-...|+.+..+..-..++ ...++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il--------~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL--------LKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH--------hccCChhHHHHHHHHHHHhcc
Confidence 2456778889998888765 455566666666788777764433333 225677788888888877765
No 259
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.00049 Score=71.46 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=50.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
.+..|.+++|++.|..++.++|.+...+...+.++..+++...|+..+..++.++|+...-|...+.....+|+|++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhC
Q 045355 133 TRQQLLTLK 141 (900)
Q Consensus 133 ~~~~al~~~ 141 (900)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555544
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.78 E-value=0.4 Score=56.43 Aligned_cols=254 Identities=11% Similarity=-0.014 Sum_probs=168.3
Q ss_pred ccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-
Q 045355 23 KQYKKGLKAADAILKK-----FPEHGETLSMKGLTLNCMD-----RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR- 91 (900)
Q Consensus 23 g~~~~Al~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 91 (900)
++.+.|+.+++.+.+. .-.++.+.+.+|.+|.... +...|+.++.++.... ++.+.+.+|.++..-.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK 340 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence 5899999999998771 1125567888999998854 6788999999998764 4567788999887655
Q ss_pred --CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHH
Q 045355 92 --EYREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN-SNGSKA 164 (900)
Q Consensus 92 --~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A 164 (900)
++..|.++|..|... .+..+.+.++.+|.. ..+...|..++.++.+.. ++.+...++..+... +.+..+
T Consensus 341 ~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred cccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 678999999998765 567888889988865 468999999999999887 444444444444333 777766
Q ss_pred HHHHHHHHhhhccCCCCCcchhchhHHHH-HHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc---
Q 045355 165 VEILEAYEGTLEDDYPPDNERCEHGEMLL-YKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI--- 236 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~--- 236 (900)
.-.... ...+.... +.....++ ........ ..+...+...+.++.. ..+..+...+|++|..-
T Consensus 417 ~~~~~~-~a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 417 LALYLY-LAELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGT 487 (552)
T ss_pred HHHHHH-HHHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCC
Confidence 633222 22221110 11111111 11111111 1144555556655543 34567777888888765
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 237 -GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 237 -g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
.+++.|...|..+-... ......++.++.... --.. +..|..+|+++.+......
T Consensus 488 ~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~----g~~~-~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQG---AQALFNLGYMHEHGE----GIKV-LHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred CCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCc----Ccch-hHHHHHHHHHHHhcCchhh
Confidence 35899999999998877 778888888763221 1233 7889999998877665444
No 261
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.77 E-value=0.11 Score=56.66 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN---SNGSKAVEILE 169 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~ 169 (900)
.+.-+..|++|++.+|++...+..+-.+.....+.+....-+++++..+|++...|..+....... -.++....++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 345667788888888888888877777777777888888888888888888888777665444331 23444443333
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
...+.+....... .........+ ......+...+...+...|..+.|+..++.+
T Consensus 127 ~~l~~L~~~~~~~--------------------~~~~~~~~~~------e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 127 KCLRALSRRRSGR--------------------MTSHPDLPEL------EEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHhhccc--------------------cccccchhhH------HHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 3222222110000 0000000000 1112344556666777777777777777777
Q ss_pred HHhC
Q 045355 250 LSMN 253 (900)
Q Consensus 250 l~~~ 253 (900)
++.+
T Consensus 181 lE~n 184 (321)
T PF08424_consen 181 LEFN 184 (321)
T ss_pred HHHH
Confidence 7776
No 262
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.12 Score=50.01 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=79.5
Q ss_pred HHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHH
Q 045355 131 VETRQQLLTLKPNHRM---NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFER 207 (900)
Q Consensus 131 ~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 207 (900)
....++....+|.... +-..++..+...|++++|+..|+. ++.... +. --.+-+-..++++....|.+++
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~---~l~~t~--De--~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ---ALAQTK--DE--NLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH---HHccch--hH--HHHHHHHHHHHHHHHHhhhHHH
Confidence 3334444444444332 344567778888888888854443 332111 11 2234566788999999999999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045355 208 ALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY 257 (900)
Q Consensus 208 Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 257 (900)
|+..+....... -........|+++...|+.++|...|+++++..++..
T Consensus 145 AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 145 ALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999887654321 1344567899999999999999999999999875543
No 263
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.038 Score=52.53 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRK-SEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
...+......++...++..+++++.......-.- . ....+ ......++.. ...+...++..+...|
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~--~-----~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPD--L-----DDEEWVEPERERLREL------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGG--G-----TTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCC--C-----CccHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 3444555566788888888888887543321000 0 00111 1112222222 2245667788888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 045355 92 EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLT 139 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (900)
++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 899999999999999998888888888899999998888888887754
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.65 E-value=0.6 Score=49.70 Aligned_cols=225 Identities=12% Similarity=0.015 Sum_probs=133.7
Q ss_pred HHhhccHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc----CC---Cc------
Q 045355 19 SYETKQYKKGLKAADAILKKF----PEH----GETLSMKGLTLNCMD-RKSEAYELVRLGVKN----DI---KS------ 76 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~----p~~----~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~----~p---~~------ 76 (900)
...+|+++.|..++.++-... |+. ...++..|......+ ++++|..+++++... .. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999986533 433 346788888888899 999999999999876 11 11
Q ss_pred -HHHHHHHHHHHHhccCHHH---HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 77 -HVCWHVYGLLYRSDREYRE---AIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 77 -~~~~~~lg~~~~~~g~~~e---Ai~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
..++..++.+|...+.++. |....+.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+-....+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 2357788889988887654 445555555566877777755555666689999999999999986542222222222
Q ss_pred HHHHH--cCCHHHHHHHHHHHHh-hhccCCCCCcchhc-hhHHHHHHHHHHHHc--CC------HHHHHHHHHHHhhh--
Q 045355 153 VSHHL--NSNGSKAVEILEAYEG-TLEDDYPPDNERCE-HGEMLLYKISLLEEC--GS------FERALAEMHKKESK-- 218 (900)
Q Consensus 153 ~~~~~--~g~~~~A~~~l~~~~~-~l~~~~~~~~~~~~-~~~~~~~la~~~~~~--g~------~~~Al~~l~~al~~-- 218 (900)
..+.. ......+...+..+.. .+. +. .+ ..+... +..++... ++ .+.....+..+...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~--~~-----~~~~~e~~v-l~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFK--SS-----EDQWLEKLV-LTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG 234 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhC--CC-----hhHHHHHHH-HHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence 22211 1333455544433322 221 11 11 122221 11222222 22 22222223321111
Q ss_pred cC---CH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 219 IV---DK----LAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 219 ~p---~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
.| .. ...+...|.-.++.++|++|+..|+-++.
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 11 11 23456678889999999999999997763
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.038 Score=52.53 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR-EAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
..|......|+.+.++..+++++.+.......-.. ...|- .....++.. ...++..++..+...|+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC
Confidence 34555666778888888888888764322110000 01111 111222222 23567788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED 177 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~ 177 (900)
+++|+..+++++..+|.+..+|..+..++...|+..+|+.++..+.+.+..
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988877763
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.61 E-value=0.71 Score=54.66 Aligned_cols=236 Identities=15% Similarity=0.016 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPE--H-------GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS----- 76 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~--~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----- 76 (900)
-.+..+.......+|.+|..++.++...-|. + ++.....|.+....|++++|+++.+.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3456777778889999999999888764332 2 3566778899999999999999999999876654
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC----CcH--HHHHHHHHHHHHhcC--HHHHHHHHHHH----HHhCCCC
Q 045355 77 HVCWHVYGLLYRSDREYREAIKCYRNALRIDP----DNI--EILRDLSLLQAQMRD--LTGFVETRQQL----LTLKPNH 144 (900)
Q Consensus 77 ~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p----~~~--~~~~~la~~~~~~g~--~~~A~~~~~~a----l~~~p~~ 144 (900)
..+...+|.+..-.|++++|..+.+++.+... -.. .+....+.++..+|+ +.+....|... +...|-+
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45778899999999999999999998887632 222 234455677788883 22333333222 2233433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CC-
Q 045355 145 RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI--VD- 221 (900)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~--p~- 221 (900)
.......+.++...-+++.+. ......+..............-.++.++.+....|++++|...+.+..... ++
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~---~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAE---AEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhh---HHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 333333344433333355554 222222222111111002222333588999999999999999998876542 21
Q ss_pred --HH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 222 --KL--AYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 222 --~~--~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
+. .+...........|+...|.....+.
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 11 11222223334567887777665553
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=3.3 Score=54.43 Aligned_cols=423 Identities=13% Similarity=0.086 Sum_probs=206.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHH
Q 045355 116 DLSLLQAQMRDLTGFVETRQQLLTLKPN--HR--MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEM 191 (900)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~ 191 (900)
.++.+-.+.+.|..|+-++++- ...+. +. ..+..+-.+|...++++....+... ... + ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~---r~a-~-----------~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR---RFA-D-----------PS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH---hhc-C-----------cc
Confidence 5666777777888887777774 11111 11 1233333466667777665533221 010 0 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYR 271 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~ 271 (900)
+..........|++..|..+|+++++..|+....+...-...+..|.+...+...+-.....++....+..++.-..
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa--- 1528 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA--- 1528 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH---
Confidence 33444555667888888888888888888766666666666667777777777666666665666555555543321
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhccc---chHHHH--HHHHhHHhhhhcCCChhhhchhhhhcCCCh
Q 045355 272 DNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQ---GEKFRE--AAFNYVRPLLTKGVPSLFSDLSPLYDQPGK 346 (900)
Q Consensus 272 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~---~~~~~~--a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~ 346 (900)
...++|+....... ...-.......++..++. .+.+.. .++.-..... .|-.......-| ...
T Consensus 1529 ----W~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i---~~lsa~s~~~Sy--~~~ 1596 (2382)
T KOG0890|consen 1529 ----WRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI---ENLSACSIEGSY--VRS 1596 (2382)
T ss_pred ----hhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh---hhHHHhhccchH--HHH
Confidence 23444444433322 000000111101111111 111110 1110000000 000000000000 000
Q ss_pred HHHHHHH--HHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HcCC----CchHHH
Q 045355 347 ADILEQL--ILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAI---EHTP----TVIDLY 417 (900)
Q Consensus 347 ~~~~~~~--l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al---~~~P----~~~~~~ 417 (900)
++.+.++ +-+.....+........ .....+..-|. +....-....+..+-+-.+++++ ..+| ...+.|
T Consensus 1597 Y~~~~kLH~l~el~~~~~~l~~~s~~-~~s~~~sd~W~--~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1597 YEILMKLHLLLELENSIEELKKVSYD-EDSANNSDNWK--NRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcc-ccccccchhHH--HHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 0111110 11111111111111110 11111223342 21111111122333333344432 2233 567899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc----c-CCcCCChhhhhHHHH
Q 045355 418 SVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK----D-GDQHNNLHDMQCMWY 492 (900)
Q Consensus 418 ~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~----~-~~~~~~l~~~q~~w~ 492 (900)
...|++-...|+++.|...+-.|.+..+. .+....|+.++..|+...|+..+..-.. + ..+..+....+.+-+
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i 1751 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI 1751 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh
Confidence 99999999999999999999999988744 4555678999999999999988754432 1 111111111111100
Q ss_pred ----HHHHHHHHHHcCCh--HHHHHHHHHHHHHhhhhhhhhhhhHHHhh------------hhccHHHHHH-HHHhhhhh
Q 045355 493 ----ELASGESYFRQGDL--GRALKKFLAVEKHYADITEDQFDFHSYCL------------RKMTLRAYVE-MLKFQDRL 553 (900)
Q Consensus 493 ----~~~lg~~y~r~g~~--~~Alk~~~~v~~~~~~~~~dq~df~~y~~------------rk~~~~~y~~-~l~~~d~l 553 (900)
.+..+.-.-..|++ ..-+++|+.+....++|.+..|-..-|-- +.|..-.|+- |..++-.+
T Consensus 1752 ~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl 1831 (2382)
T KOG0890|consen 1752 FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRAL 1831 (2382)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHH
Confidence 11222222333432 35578899999999888887665553331 2344444555 44445555
Q ss_pred c-CCHHHHHHHHHHHHHHHHHh
Q 045355 554 H-SHAYFHKAAAGAIRCYIKLF 574 (900)
Q Consensus 554 ~-~~~~~~~a~~~~~~~y~~l~ 574 (900)
+ ++..-..+.+.++...+.+.
T Consensus 1832 ~yg~~~iyqsmPRllTLWLD~~ 1853 (2382)
T KOG0890|consen 1832 YYGNQHLYQSMPRLLTLWLDIG 1853 (2382)
T ss_pred HhcchhHHHhhhHHHHHHHhhc
Confidence 5 45555556788888887643
No 268
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.58 E-value=2.6 Score=50.39 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHhccCHH
Q 045355 26 KKGLKAADAILKKFPEH----GETLSMKGLTLN-CMDRKSEAYELVRLGVKNDIK--S----HVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~----~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~ 94 (900)
..|+++++-+++..+-. ..+...+|.+++ ...++++|..++.+++.+... . ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45788888887533322 347788888887 788999999999999876533 2 234567788888888777
Q ss_pred HHHHHHHHHHhhCCC---cHH-HHHH-H-HHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHcCCHH
Q 045355 95 EAIKCYRNALRIDPD---NIE-ILRD-L-SLLQAQMRDLTGFVETRQQLLTLK--PNHRMNWI----GFAVSHHLNSNGS 162 (900)
Q Consensus 95 eAi~~~~~al~~~p~---~~~-~~~~-l-a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~----~la~~~~~~g~~~ 162 (900)
|....+++++.... ... ..+. + .......+|+..|++.++.+.... ++++.... ..+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999876544 221 1222 2 333333489999999999998865 45554332 3355566668788
Q ss_pred HHHHHHHHHHhhhcc---CCCCCcchhchhHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 045355 163 KAVEILEAYEGTLED---DYPPDNERCEHGEMLLYKISL--LEECGSFERALAEMHKK 215 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~---~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~Al~~l~~a 215 (900)
++++.+......... ++.. .+....++..+-.+ +...|++..+...+++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~---~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSV---HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCC---CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888777666433331 1211 23444455544444 45677777776665544
No 269
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.052 Score=56.51 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDN----IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
-+-.-|+-|+..++|..|+.+|.+.|+..-.+ ...|.+.|.+....|+|..|+....+++.++|.+..+++.-|.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 35566888888888889999998888775443 34578888888888999999998889999999888888888888
Q ss_pred HHHcCCHHHHHHHHHH
Q 045355 155 HHLNSNGSKAVEILEA 170 (900)
Q Consensus 155 ~~~~g~~~~A~~~l~~ 170 (900)
++.+.++.+|...++.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888854443
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.12 Score=50.02 Aligned_cols=95 Identities=5% Similarity=-0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPD-NIEILRDLSLLQA 122 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~la~~~~ 122 (900)
..++..+...|++++|+..++.++....+. ..+-..++.+...+|.+++|+..+...-. +. ........|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 345555666666666666666666432221 22345566666666666666666544211 11 1222344566666
Q ss_pred HhcCHHHHHHHHHHHHHhCCC
Q 045355 123 QMRDLTGFVETRQQLLTLKPN 143 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~ 143 (900)
..|+-++|+..|.+++...++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666666533
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.066 Score=55.82 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEH----GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
.-..|..|+..++|..|...|.+.|+..-.+ ...|.+++-+.+..|+|..|+.-+.+++..+|.+..+++.=+.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 4467888888899999999999988864433 446778888888889999999999999999999998888888999
Q ss_pred HhccCHHHHHHHHHHHHhhCCC
Q 045355 88 RSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~ 109 (900)
..+.++.+|..+.+..+.++-+
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHH
Confidence 9999988888888887766544
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.36 E-value=1.8 Score=51.05 Aligned_cols=266 Identities=16% Similarity=0.052 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhc---
Q 045355 59 KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD-----REYREAIKCYRNALRI-----DPDNIEILRDLSLLQAQMR--- 125 (900)
Q Consensus 59 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eAi~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 125 (900)
..+|..+++.+... .+..+.+.+|.+|..- .|.+.|+.+|+.+.+. .-.++.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887664 4566777788887654 6899999999998771 1125567888999998843
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 126 --DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS---NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 126 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
++..|+..|.++-... ++.+.+.+|.++.... ++..|. +.|..+.. ..+..+.+.++.+|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~---~yy~~Aa~---------~G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAF---EYYSLAAK---------AGHILAIYRLALCYE 371 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHH---HHHHHHHH---------cCChHHHHHHHHHHH
Confidence 6788999999887764 5667788888887665 456777 55655554 345688888888886
Q ss_pred Hc----CCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCC
Q 045355 201 EC----GSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI-GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 201 ~~----g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~ 275 (900)
.- .+...|..++.++.+.. .+.+...++.++..- +++..+...+....+..-+....-...............
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~ 449 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSR 449 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccc
Confidence 53 47889999999998887 334344444443332 888888777776666543332221111111100000000
Q ss_pred CCCCcHHHHHHHHHHHHHhcCcchhhhhchhhccc----chHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCC
Q 045355 276 YSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQ----GEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPG 345 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~----~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~ 345 (900)
....+...+...+.++...-. ......++..|.. ..++..+...|..+.... +....+++.++....
T Consensus 450 ~~~~~~~~~~~~~~~a~~~g~-~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~ 520 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAAQGN-ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGE 520 (552)
T ss_pred ccccchhHHHHHHHHHHhccC-HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCc
Confidence 113355666666666644332 2233444444443 456888888888877555 777777777775433
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.31 E-value=1.2 Score=52.78 Aligned_cols=239 Identities=15% Similarity=0.013 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--c-------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK--S-------HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI- 111 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~-------~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~- 111 (900)
+|......++......++.+|..++.++...-+. . ....-..|.+....|++++|++..+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455666788888999999999999988764332 1 23345678888899999999999999998877653
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHH--HHHHHHHcCCHHHHH--HHHHHHHh-hhccC
Q 045355 112 ----EILRDLSLLQAQMRDLTGFVETRQQLLTL----KPNHRMNWIG--FAVSHHLNSNGSKAV--EILEAYEG-TLEDD 178 (900)
Q Consensus 112 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~--la~~~~~~g~~~~A~--~~l~~~~~-~l~~~ 178 (900)
.++..++.+..-.|++++|..+...+.+. +.-....|.. .+.++..+|+..-+. ..+..... .+...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 45778888999999999999998888776 3333344443 466777778433332 22211111 11111
Q ss_pred CCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----cCC--HHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 179 YPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK----IVD--KLA-YKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 179 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~----~p~--~~~-~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
+.+.......+.++...-+++.+.......++. .|. ... ....++.++...|++++|.....++..
T Consensus 574 -------~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 574 -------PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred -------ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222223333333333333355555555444432 222 222 234899999999999999999988876
Q ss_pred hCCCC--HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHH
Q 045355 252 MNPDN--YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKS 290 (900)
Q Consensus 252 ~~p~~--~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~ 290 (900)
..... ...|...+......- ....|+...+.....+
T Consensus 647 l~~~~~~~~~~~a~~~~v~~~l---wl~qg~~~~a~~~l~~ 684 (894)
T COG2909 647 LLLNGQYHVDYLAAAYKVKLIL---WLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcCCCCCchHHHHHHHhhHHH---hcccCCHHHHHHHHHh
Confidence 54222 222222211110000 1346777777766655
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.28 E-value=0.0058 Score=41.56 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 045355 416 LYSVKSRILKHAGDLAAAATLADEARCMDL 445 (900)
Q Consensus 416 ~~~~la~i~~~~G~~~eA~~~~~~al~ldp 445 (900)
+|+.+|.+|..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.23 E-value=0.0074 Score=41.02 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+|+.+|.+|...|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666666666666666666666553
No 276
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.0029 Score=65.94 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=50.9
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
....|.++.|++.|..++.++|....++...+.+++.++.+..|+..+..++.++|+....+-..+.+...+|+|.+|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666666666666666666666666
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.02 E-value=3.2 Score=45.64 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
....-..+.+.+..|+.-.|-.....+|+..|..|......+.+...+|.|+.+...+.-+-.
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 344455566778889999998888899999999999888899999999999999888765443
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.92 E-value=1.5 Score=44.64 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHhhhcCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 202 CGSFERALAEMHKKESKIVDKL----AYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 202 ~g~~~~Al~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
..++++|+..|++++++.+... .++..+..+++++|++++-...|++++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3478899999999988877643 4566777888888888888888888774
No 279
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.83 E-value=4.1 Score=50.31 Aligned_cols=102 Identities=23% Similarity=0.169 Sum_probs=80.7
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhC----C---CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHG---ETLSMKGLTLNCM----D---RKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~---~~~~~lg~~~~~~----g---~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
.++...+.|++|+..|+++-..+|... ++.+..|..+... | .+++|+.-|++. ...|.-+--|...+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 456778999999999999999998764 5778888877654 3 466777777654 3356677778899999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|.++|+|+|-+++|.-|++..|..+.+-+..-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 999999999999999999999998876444333
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.78 E-value=0.23 Score=54.67 Aligned_cols=176 Identities=13% Similarity=-0.051 Sum_probs=99.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH-
Q 045355 34 AILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIE- 112 (900)
Q Consensus 34 ~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~- 112 (900)
.+|+.+|-|.+++..++.++..+|+...|.+++++|+-.........+..-..-...|+- .--| ..+.|-.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~f 102 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQF 102 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHH
Confidence 446789999999999999999999999999999998753211100000000000000100 0000 0122333
Q ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 113 --ILRDLSLLQAQMRDLTGFVETRQQLLTLKPN-HRMNWIGFAVSH-HLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 113 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
+++.....+.+.|-+..|.+..+-++.++|. ++-........| .+.++++--++..+.+....... .. ...
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~--~~l 177 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WL--SLL 177 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hh--hhC
Confidence 3555666778888899999999999999888 665444444433 44577766665555443310000 00 011
Q ss_pred hHHHHHHHHHHHHcCCH---------------HHHHHHHHHHhhhcCCH
Q 045355 189 GEMLLYKISLLEECGSF---------------ERALAEMHKKESKIVDK 222 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~---------------~~Al~~l~~al~~~p~~ 222 (900)
+...+..+.++...++- +.|...+.+++...|.-
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 23455555666666655 66777777777666653
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=12 Score=49.65 Aligned_cols=359 Identities=11% Similarity=0.045 Sum_probs=179.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDN----IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
.++.+-++.+.|..|+-++++- ...+.. ...+..+-.+|..++++++-.-....- ..+| ........+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHh
Confidence 5677778888888888888875 222221 122444445788888887765555431 1122 24445556667
Q ss_pred cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHH-HHHHHHc
Q 045355 158 NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQE-VSLLVKI 236 (900)
Q Consensus 158 ~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~l-a~~~~~~ 236 (900)
.|++..|. .+|++++..++.. ...+...-......|.++..+.+.+-.....++...-+..+ -.+-.+.
T Consensus 1462 ~g~~~da~---~Cye~~~q~~p~~-------~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1462 SGNWADAA---ACYERLIQKDPDK-------EKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred hccHHHHH---HHHHHhhcCCCcc-------ccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 78888888 6677677665421 12233334445566777777777766655555444443333 3344677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch-------h---hhhchh
Q 045355 237 GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS-------A---VKRIPL 306 (900)
Q Consensus 237 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~---~~~l~l 306 (900)
++++.-..+.. ..+-++..... +|.++-- ....|.-.-....+...+..-... . .+.+.+
T Consensus 1532 ~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~------~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~ 1601 (2382)
T KOG0890|consen 1532 SQWDLLESYLS---DRNIEYWSVES-IGKLLLR------NKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILM 1601 (2382)
T ss_pred cchhhhhhhhh---cccccchhHHH-HHHHHHh------hcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHH
Confidence 77776555433 33333333321 3333210 011111111111111111100000 0 000000
Q ss_pred hcccchHHHHHHHHhHHhhhhcCCChhhhc--hhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHH
Q 045355 307 DFLQGEKFREAAFNYVRPLLTKGVPSLFSD--LSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLF 384 (900)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~--L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~ 384 (900)
.+...-++....+...+ ...+..+.... ...-....+....+.+-+-.+.+++-.....+ ......+.+|.
T Consensus 1602 kLH~l~el~~~~~~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~-----~~~~~~ge~wL 1674 (2382)
T KOG0890|consen 1602 KLHLLLELENSIEELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRS-----NLKSRLGECWL 1674 (2382)
T ss_pred HHHHHHHHHHHHHHhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccc-----cccchhHHHHH
Confidence 00000000000000000 00111111111 00000001111112233333333222110010 11223344789
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----------h--h--
Q 045355 385 FLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLAD-----------R--Y-- 449 (900)
Q Consensus 385 ~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d-----------~--~-- 449 (900)
..|++-...|+++.|..++-.|.+.. .++++...|..+.+.|+-..|+..+++.++++-.+ + .
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 99999999999999999999998887 67899999999999999999999999999774332 2 1
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 450 --VNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 450 --l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
...+.++++...|+ -++.+++..++.
T Consensus 1753 ~~~~L~~~~~~~es~n-~~s~~ilk~Y~~ 1780 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGN-FESKDILKYYHD 1780 (2382)
T ss_pred hhHHHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 12334566666777 556666655544
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.57 E-value=0.66 Score=51.14 Aligned_cols=137 Identities=15% Similarity=0.030 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------CC------------CchH---HHHHHHHHHHHcCCHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEH--------------TP------------TVID---LYSVKSRILKHAGDLAA 432 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~--------------~P------------~~~~---~~~~la~i~~~~G~~~e 432 (900)
++..++.++...|+.+.|.+.+++||-. ++ .|.. +.+.....+.+.|-+..
T Consensus 42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rT 121 (360)
T PF04910_consen 42 TLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRT 121 (360)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHH
Confidence 7899999999999999999999998631 11 2333 44556677889999999
Q ss_pred HHHHHHHHHhcCcC-Ch-hHHHHHHHHHHHcCChHHHHHHHHHhccc--CCcCCChhhhhHHHHHHHHHHHHHHcCCh--
Q 045355 433 AATLADEARCMDLA-DR-YVNSECVKRMLQADQVSLAEKTAALFTKD--GDQHNNLHDMQCMWYELASGESYFRQGDL-- 506 (900)
Q Consensus 433 A~~~~~~al~ldp~-d~-~l~~~~a~~~l~~g~~eeA~~~~~~~~~~--~~~~~~l~~~q~~w~~~~lg~~y~r~g~~-- 506 (900)
|.++.+-.+++||. || .+...+=.+.+++++++--++++..+... ..-...+- -+.+..+-++++.++-
T Consensus 122 AlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP-----n~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 122 ALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP-----NFAFSIALAYFRLEKEES 196 (360)
T ss_pred HHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-----cHHHHHHHHHHHhcCccc
Confidence 99999999999999 88 55666667788999998777777655431 11000000 1345788888999888
Q ss_pred -------------HHHHHHHHHHHHHhhhh
Q 045355 507 -------------GRALKKFLAVEKHYADI 523 (900)
Q Consensus 507 -------------~~Alk~~~~v~~~~~~~ 523 (900)
+.|-+.+.++...|+..
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhHHH
Confidence 88888888888877643
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.56 E-value=0.79 Score=49.88 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 99 CYRNALRIDPDNIEILRDLSLLQAQMRD------------LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
-|++.++.+|.+..+|..++..+-..-. .+.-+..++++++.+|++...+..+-.......+.++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~- 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA- 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH-
Confidence 4556666677777777666665544322 455677899999999999988888877777777666655
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH---cCCHHHHHHHHHHHhhh
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE---CGSFERALAEMHKKESK 218 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~Al~~l~~al~~ 218 (900)
+.+++++..++ ....+|..+...... .-.+......|.+++..
T Consensus 86 --~~we~~l~~~~-------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 --KKWEELLFKNP-------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred --HHHHHHHHHCC-------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 66777776553 333555443333322 33567777777777654
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.54 E-value=0.062 Score=40.65 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRIL 424 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~ 424 (900)
.+|++|..+.++|+|++|..+++.++++.|++..+......|-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4788999999999999999999999999999988877666554
No 285
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.48 E-value=7.5 Score=45.99 Aligned_cols=396 Identities=12% Similarity=-0.001 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH---HhccCHHHHHHHHHH
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY---RSDREYREAIKCYRN 102 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~---~~~g~~~eAi~~~~~ 102 (900)
+.=+..++.-+..++.+...+..+-.++...|++++-...-.++..+.|-.+..|.....-. ...++-.++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 33455556666677777788888888899999998888777777788888887776655432 234677888888998
Q ss_pred HHhhCCCcHHHHHHHHHHH-------HHhcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 045355 103 ALRIDPDNIEILRDLSLLQ-------AQMRDLTGFVETRQQLLTLKPNHR-------MNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 103 al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l 168 (900)
++. +-..+.+|...+... ...++++.....|.+++..--... ..+..+-..|...-..++- +
T Consensus 176 al~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv---~ 251 (881)
T KOG0128|consen 176 ALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV---I 251 (881)
T ss_pred Hhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH---H
Confidence 885 344555555555443 334677888888888886432211 2223333333333322222 2
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHH--HHH-HHcCCHHHHHHHHHH-------HhhhcCCHHHHHHHHHHHHHHcCC
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKI--SLL-EECGSFERALAEMHK-------KESKIVDKLAYKEQEVSLLVKIGR 238 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la--~~~-~~~g~~~~Al~~l~~-------al~~~p~~~~~~~~la~~~~~~g~ 238 (900)
..+...+.... +. .-....|.... .++ ....+++.|+..+.+ .+...+....-|..+-......|.
T Consensus 252 a~~~~el~~~~--D~--~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~ 327 (881)
T KOG0128|consen 252 ALFVRELKQPL--DE--DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGD 327 (881)
T ss_pred HHHHHHHhccc--hh--hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 34444333221 00 01111111111 222 233455555555433 334445555666677777788899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhch-hhcccchHHHHH
Q 045355 239 LEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIP-LDFLQGEKFREA 317 (900)
Q Consensus 239 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~-l~~~~~~~~~~a 317 (900)
.-.-...+++++...+.+...|...+..+. ...+-.+.....+-++....|.......-. +.+-....-...
T Consensus 328 p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d-------~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~v 400 (881)
T KOG0128|consen 328 PVRIQLIEERAVAEMVLDRALWIGYGVYLD-------TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITV 400 (881)
T ss_pred chHHHHHHHHHHHhccccHHHHhhhhhhcc-------cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhh
Confidence 988889999999999999999988887663 223344455555666666666554332211 222222222222
Q ss_pred HHHhHHhhhhcCCChhhhchhhh-----hcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHH-
Q 045355 318 AFNYVRPLLTKGVPSLFSDLSPL-----YDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYD- 391 (900)
Q Consensus 318 ~~~~~~~~l~~~~p~~~~~L~~l-----y~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~- 391 (900)
+..++...+..++......+... .......+...+.+.....-+... +.. ..++..-.+-..|+++.
T Consensus 401 I~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~--~~~-----~~Dt~~~~~q~wA~~E~s 473 (881)
T KOG0128|consen 401 IVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTEL--YGD-----QLDTRTEVLQLWAQVEAS 473 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH--hhh-----hhhhHHHHHHHHHHHHHH
Confidence 22221111111111000000000 001112222333333332222210 000 01111112334444443
Q ss_pred HhCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 392 RRGQYDVALSKIDEAIEHTPTVID-LYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 392 ~~g~~~~Al~~~~~al~~~P~~~~-~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
.+++.+.|+.+.+..+...-.... .|+....+-.+.|+...+...+++|+.-
T Consensus 474 l~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 367889999988877776665555 7777788888889999999888877654
No 286
>PRK10941 hypothetical protein; Provisional
Probab=95.41 E-value=0.14 Score=53.65 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
..++-.+|.+.++++.|+.+.+..+.+.|+++.-+++.|.+|.++|.+..|+..++..++..|+++.+-.....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999886554433
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.35 E-value=0.12 Score=45.40 Aligned_cols=103 Identities=14% Similarity=0.236 Sum_probs=66.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGET---LSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
.+..++..|++-+|+++.+..+..++++... +..-|.++.. .+...+-.+..+-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHHH--------
Confidence 4667788888888888888888887776643 3334444332 2222222222222222
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 045355 92 EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL 140 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (900)
.|+++|.++..+.|.....++.+|.-+-....|++++.-.++.+.+
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3667778888888887777888887777777777777777777664
No 288
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=2.4 Score=47.67 Aligned_cols=224 Identities=15% Similarity=0.051 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK--SHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
...+.+.......|+++--..+.+..+...|+.+.|+..+...+...-+ .+.+++.+|.++..+.+|..|...+....
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445555579999999999999999999988899999888771111 24567889999999999999999999888
Q ss_pred hhCCCcHHHHHHHH-HHHHH--------hcCHHHHHHHHHHH---HHhCCCCH------------------------H--
Q 045355 105 RIDPDNIEILRDLS-LLQAQ--------MRDLTGFVETRQQL---LTLKPNHR------------------------M-- 146 (900)
Q Consensus 105 ~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~------------------------~-- 146 (900)
+.+.-..-.|..++ .++.+ .|+-++|..+++.. +...|.+. .
T Consensus 331 desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~ 410 (546)
T KOG3783|consen 331 DESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLAS 410 (546)
T ss_pred hhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccc
Confidence 77665555555555 23322 23444444333322 22222111 0
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----
Q 045355 147 NWIGFAVSHHLN--SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI----- 219 (900)
Q Consensus 147 ~~~~la~~~~~~--g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~----- 219 (900)
.++.++..+--. ....+.. .++..... +..+ +.-+..--++.+|.++..+|+...|..++....+..
T Consensus 411 P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~-~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 411 PYYELAYFWNGFSRMSKNELE----KMRAELEN-PKID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred hHHHHHHHHhhcccCChhhHH----HHHHHHhc-cCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 012222222111 1122222 11111111 1111 112334456778999999999999999998877431
Q ss_pred -C-CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 045355 220 -V-DKLAYKEQEVSLLVKIGR-LEEAAELYRALLSMNPDN 256 (900)
Q Consensus 220 -p-~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~ 256 (900)
+ -.|.+++.+|.++..+|. ..++..++.++-+-..+.
T Consensus 485 d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 485 DLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 1 136788999999999999 999999999998766443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.22 E-value=0.026 Score=38.98 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 417 YSVKSRILKHAGDLAAAATLADEAR 441 (900)
Q Consensus 417 ~~~la~i~~~~G~~~eA~~~~~~al 441 (900)
+..+|.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 290
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.19 E-value=6.7 Score=43.75 Aligned_cols=92 Identities=9% Similarity=-0.009 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC-HHHHHHHHHHHHh
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE-YREAIKCYRNALR 105 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAi~~~~~al~ 105 (900)
+-...|+.++..++.++..|..........+.+.+--..|.+++..+|+++..|..-+.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 446678888888999999998888777777778899999999999999999999888877666655 8999999999999
Q ss_pred hCCCcHHHHHHHH
Q 045355 106 IDPDNIEILRDLS 118 (900)
Q Consensus 106 ~~p~~~~~~~~la 118 (900)
.+|+++.+|...-
T Consensus 169 ~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 169 FNPDSPKLWKEYF 181 (568)
T ss_pred cCCCChHHHHHHH
Confidence 9999998865543
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.14 E-value=0.038 Score=37.00 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045355 225 YKEQEVSLLVKIGRLEEAAELYRALLSMNPDN 256 (900)
Q Consensus 225 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 256 (900)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677777777777777777777777777763
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.10 E-value=6.5 Score=43.12 Aligned_cols=404 Identities=12% Similarity=0.057 Sum_probs=206.0
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|....++|..+..+-.+|.+++-.+.+++...-+|--+.+|...-.--...+++..-..+|.+.+...-+ .+.|..+-.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHHH
Confidence 3444556666655556677777778888877777766666654444444456677777777777764333 445544433
Q ss_pred HHHhccC---------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHHhCCCCHH-
Q 045355 86 LYRSDRE---------YREAIKCYRNALRIDPDNIEILRDLSLLQA---------QMRDLTGFVETRQQLLTLKPNHRM- 146 (900)
Q Consensus 86 ~~~~~g~---------~~eAi~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~- 146 (900)
.-++..+ .-+|.+..-.+.-.+|.....|...+..+. ++.+.+.-...|.+++..--++.+
T Consensus 118 YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nlek 197 (660)
T COG5107 118 YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEK 197 (660)
T ss_pred HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHH
Confidence 3333221 112222222223346666677766665543 233455566677777765433332
Q ss_pred HHHHHHH---------HHHHcC----CHHHHHHHHHHHHhh---hccCCCCC------cchhchhHHHHHHHHHHHHc--
Q 045355 147 NWIGFAV---------SHHLNS----NGSKAVEILEAYEGT---LEDDYPPD------NERCEHGEMLLYKISLLEEC-- 202 (900)
Q Consensus 147 ~~~~la~---------~~~~~g----~~~~A~~~l~~~~~~---l~~~~~~~------~~~~~~~~~~~~la~~~~~~-- 202 (900)
.|...-. +---.| -|-.|...++.+... +....+.. ..+... .-|++....-...
T Consensus 198 lW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~-S~WlNwIkwE~en~l 276 (660)
T COG5107 198 LWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD-SNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc-chhhhHhhHhhcCCc
Confidence 2221111 100011 123333222222211 11100000 000000 1133333322221
Q ss_pred ----CCHHH-HHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCC
Q 045355 203 ----GSFER-ALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYS 277 (900)
Q Consensus 203 ----g~~~~-Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~ 277 (900)
|-..+ ---.+++++...|-.+.+|+.....+...++-+.|+...++.+...|. ....++.++.+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~------- 346 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELV------- 346 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhc-------
Confidence 11222 222356666667777788888888888888888888777777766665 445555555322
Q ss_pred CCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHH
Q 045355 278 SGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILEL 357 (900)
Q Consensus 278 ~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~ 357 (900)
.+.+.....|+++.+. +.+.. ..+....-. ...++.+...+.+-.-
T Consensus 347 -nd~e~v~~~fdk~~q~--------------------------L~r~y-s~~~s~~~s------~~D~N~e~~~Ell~kr 392 (660)
T COG5107 347 -NDEEAVYGCFDKCTQD--------------------------LKRKY-SMGESESAS------KVDNNFEYSKELLLKR 392 (660)
T ss_pred -ccHHHHhhhHHHHHHH--------------------------HHHHH-hhhhhhhhc------cccCCccccHHHHHHH
Confidence 3334444444443221 00000 000000000 0000110011111111
Q ss_pred HHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHH-HHHcCCHHHHHHH
Q 045355 358 EHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRI-LKHAGDLAAAATL 436 (900)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i-~~~~G~~~eA~~~ 436 (900)
.. .-+.+| ..+-..-.+..-.+.|...|-++-+..-...++|..-|.+ +...|++.-|...
T Consensus 393 ~~----------------k~t~v~--C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~i 454 (660)
T COG5107 393 IN----------------KLTFVF--CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNI 454 (660)
T ss_pred Hh----------------hhhhHH--HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHH
Confidence 00 112233 3333444456668888899988776554455566655555 4568999999999
Q ss_pred HHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 045355 437 ADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAAL 473 (900)
Q Consensus 437 ~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~ 473 (900)
|+-.+...|+++..-.+...++++.|+-+.|..++..
T Consensus 455 felGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 455 FELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999997777777888899998888877653
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.08 E-value=0.21 Score=43.92 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=71.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCW---HVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
++.-++..|++-+|+++.+..+...+++..+| ..-|.++. +.+-..+..+...-+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHH----------
Confidence 45677888999999999999988877776544 33344433 333333322222222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
+-.+++++.++..+.|.....++.+|.-+.....|++++ ....+.+...
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v---~kak~~Lsv~ 108 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAV---KKAKRGLSVT 108 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHH---HHHHHHhccc
Confidence 235778999999999999999999998887788888888 5666666544
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.07 E-value=0.037 Score=38.20 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=14.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
|..+|.+|...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.04 E-value=1.2 Score=45.35 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc--hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---cCCH-
Q 045355 149 IGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE--RCEHGEMLLYKISLLEECGSFERALAEMHKKESK---IVDK- 222 (900)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~---~p~~- 222 (900)
..+|.+++..|.|..-.+++..+.+....+...++. .....+++..-.++|-.+.+...-...|++++.+ .|.-
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 368888999999988888888877766554333221 1234466666778888888888888888888765 2321
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 223 --LAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 223 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
..+...=|..+++.|++++|-.-|-++++..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 1233444677889999999999888888764
No 296
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.00 E-value=7 Score=42.90 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM------------------ 443 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l------------------ 443 (900)
+|+.-...+...+|-+.|+...++++...|. +.+.++..|....+-++-..+|+++.+-
T Consensus 304 vw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 304 VWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDN 380 (660)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccC
Confidence 3455555666788888888888888877776 6677788887777777777777665431
Q ss_pred CcCC-h-----------hHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHH-HHHHHcCChHHHH
Q 045355 444 DLAD-R-----------YVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASG-ESYFRQGDLGRAL 510 (900)
Q Consensus 444 dp~d-~-----------~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg-~~y~r~g~~~~Al 510 (900)
+|.- + +..+-...+..|..-++.|..++.+..+.+....+++. ..| .-|+..|++.-|-
T Consensus 381 N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi--------~~A~~E~~~~~d~~ta~ 452 (660)
T COG5107 381 NFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYI--------YCAFIEYYATGDRATAY 452 (660)
T ss_pred CccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceee--------eHHHHHHHhcCCcchHH
Confidence 1100 0 11222334455666677777777777776644444444 122 2356788999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhh
Q 045355 511 KKFLAVEKHYADITEDQFDFHSYCL 535 (900)
Q Consensus 511 k~~~~v~~~~~~~~~dq~df~~y~~ 535 (900)
+.|+--+.+|++..---..+..|.+
T Consensus 453 ~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 453 NIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9998888888776543333333433
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.98 E-value=5.3 Score=42.79 Aligned_cols=182 Identities=16% Similarity=0.099 Sum_probs=114.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hc
Q 045355 54 NCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS----DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MR 125 (900)
Q Consensus 54 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g 125 (900)
...+.+..|...+..+-... .......++.+|.. ..+..+|+.+|+.+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 34566777777777766521 22455566666654 34577788888744 345566777778877776 44
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHH
Q 045355 126 DLTGFVETRQQLLTLKPNH-RMNWIGFAVSHHLNS-------NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKIS 197 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 197 (900)
|+.+|...|+++....-.. ....+.++..+..-+ +...|. ..|.++.... +..+.+.+|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~---~~~~~aa~~~---------~~~a~~~lg~ 195 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL---YLYRKAAELG---------NPDAQLLLGR 195 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHH---HHHHHHHHhc---------CHHHHHHHHH
Confidence 7788888888877654322 233666666665542 112444 4444444322 3477888887
Q ss_pred HHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCC
Q 045355 198 LLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG---------------RLEEAAELYRALLSMNP 254 (900)
Q Consensus 198 ~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~al~~~p 254 (900)
+|.. ..++.+|...|.++.+... ....+.++ ++...| +...|...+..+....+
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7755 3488999999999988776 77777788 666666 55555555555555443
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.98 E-value=0.22 Score=51.26 Aligned_cols=68 Identities=22% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 52 TLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 52 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
-....|+.++|..+|+.++.+.|.++.++..+|......++.-+|-.||-+|+.++|.+..++.+.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34566777777777777777777777777777777777777777777777777777777777666554
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.96 E-value=0.055 Score=36.22 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPE 41 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~ 41 (900)
+++..|..++..|++++|+..|+++++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.95 E-value=0.25 Score=48.46 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCh----hHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTP---TVIDLYSVKSRILKHAGDLAAAATLADEARCM--DLADR----YVNS 452 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P---~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l--dp~d~----~l~~ 452 (900)
++..+|.+|.+.|+++.|++.|.++.+... ...+.++.+.++....|++.....++.++..+ .+.|. .+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 788999999999999999999999988764 34678899999999999999999999999876 23333 4666
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 045355 453 ECVKRMLQADQVSLAEKTAA 472 (900)
Q Consensus 453 ~~a~~~l~~g~~eeA~~~~~ 472 (900)
..+.+.+..+++.+|-+.+-
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHhchHHHHHHHHH
Confidence 67888899999999976653
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.86 E-value=0.14 Score=38.73 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILR 115 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~ 115 (900)
+++.++..+.+.|+|++|..+.+.+++.+|+|.++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4555666666666666666666666666666655543
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.80 E-value=0.38 Score=45.54 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
++..+......++.+.+..+++.+--..|+.++.-..-|.++...|++.+|+.+++.+....|..+.+--.++.|+...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34444444445555555555555544555555555555555555555555555555555555555555555555555554
Q ss_pred C
Q 045355 92 E 92 (900)
Q Consensus 92 ~ 92 (900)
+
T Consensus 93 D 93 (160)
T PF09613_consen 93 D 93 (160)
T ss_pred C
Confidence 4
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.75 E-value=8.3 Score=42.55 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=107.9
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
....||.-.|-.-...++...|.++......+.+...+|+|+.+...+...++++.... .+...+-+-..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----------~~~~~~~r~~~ 368 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----------STLRCRLRSLH 368 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----------hHHHHHHHhhh
Confidence 34568888899999999999999999999999999999999999988888888776432 34555666778
Q ss_pred HcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 201 ECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEG 262 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 262 (900)
..|++++|+..-.-.+...-+++++...-+-....+|-++++...|++++.++|.....|.+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 89999999999988887766677776666666778889999999999999999776544433
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.71 E-value=0.3 Score=50.27 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=55.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
+.-.+..|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3344567888888888888888888888888888888888888888888888888888888877766544
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.67 E-value=0.94 Score=40.09 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC---CC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------c
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKF---PE---------HGETLSMKGLTLNCMDRKSEAYELVRLGVK-------N 72 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~---p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-------~ 72 (900)
.+..+...++.|-|++|...+.++.... |. ++-.+..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3566777788899999999999988742 22 123566777888888999888887777774 3
Q ss_pred CCCcHHHH----HHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 73 DIKSHVCW----HVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 73 ~p~~~~~~----~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
+.+....| +..+..+...|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 44444444 4566677777777777777777654
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.64 E-value=0.32 Score=41.64 Aligned_cols=64 Identities=14% Similarity=0.021 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccC
Q 045355 29 LKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS--HVCWHVYGLLYRSDRE 92 (900)
Q Consensus 29 l~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~ 92 (900)
+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777777766665543 3333333344444443
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.51 E-value=1.7 Score=41.17 Aligned_cols=84 Identities=13% Similarity=-0.075 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..+.....+-...++.+++..++...--+.|..+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555666677778888888888877778899988888899999999999999999999888888888888888888888
Q ss_pred hcCH
Q 045355 124 MRDL 127 (900)
Q Consensus 124 ~g~~ 127 (900)
+||.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 8775
No 308
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.32 E-value=8.9 Score=41.04 Aligned_cols=184 Identities=17% Similarity=0.102 Sum_probs=127.6
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----
Q 045355 18 KSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCM----DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS---- 89 (900)
Q Consensus 18 ~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~---- 89 (900)
.....+++..+...+..+-. -.++.+...++.+|... .+..+|..+|+.+.. ...+.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCc
Confidence 33456788888888888755 23346777788777664 467889999995544 4566778889999887
Q ss_pred ccCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 045355 90 DREYREAIKCYRNALRIDPDN-IEILRDLSLLQAQMR-------DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN--- 158 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 158 (900)
..++.+|..+|+++.+..-.. ......++.+|..-. +...|...|.++-... ++.+.+.+|.+|..-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 559999999999998875443 344777888776642 3346888888877665 777888888777653
Q ss_pred -CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhhhcC
Q 045355 159 -SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG---------------SFERALAEMHKKESKIV 220 (900)
Q Consensus 159 -g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~Al~~l~~al~~~p 220 (900)
.++.+|. ..|.++.... +....+.++ ++...| +...|...+..+....+
T Consensus 204 ~~d~~~A~---~wy~~Aa~~g---------~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 204 PRDLKKAF---RWYKKAAEQG---------DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CcCHHHHH---HHHHHHHHCC---------CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 4778888 5666666543 146777777 666555 55566666665554433
No 309
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.22 E-value=8.4 Score=40.49 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=123.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY 93 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 93 (900)
......++..+..+-++....+|+++|+.+.++..++.-- .--..+|..+++++++.... .+.........|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccc
Confidence 3344566777888888899999999999998888776432 23467888889888874321 11222222222222
Q ss_pred HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 94 REAIKCYRNALRIDPD-NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR--MNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
.+|. .+.+.+ ...+-+.|+.|..++|+..+|+..++.+.+..|-.. ...-++..++....-|.....++..
T Consensus 263 ~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 263 HEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 122221 123457889999999999999999999888777322 2344566666666666666666666
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
|..... |....+.+.-+.+ ++...-+ +..|+. . ..+|..-. -..|++...+++
T Consensus 337 YDdisl---------PkSA~icYTaALL--------K~RAVa~---kFspd~-a--srRGLS~A----E~~AvEAihRAv 389 (556)
T KOG3807|consen 337 YDDISL---------PKSAAICYTAALL--------KTRAVSE---KFSPET-A--SRRGLSTA----EINAVEAIHRAV 389 (556)
T ss_pred hccccC---------cchHHHHHHHHHH--------HHHHHHh---hcCchh-h--hhccccHH----HHHHHHHHHHHh
Confidence 654321 2222222211111 0111111 112222 1 12222111 134788889999
Q ss_pred HhCCCCHHHHHHHHHH
Q 045355 251 SMNPDNYSYYEGLQKC 266 (900)
Q Consensus 251 ~~~p~~~~~~~~l~~~ 266 (900)
+.||.-+.++..+-..
T Consensus 390 EFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 390 EFNPHVPKYLLEMKSL 405 (556)
T ss_pred hcCCCCcHHHHHHHhc
Confidence 9999999887776554
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.16 E-value=14 Score=42.77 Aligned_cols=195 Identities=13% Similarity=0.028 Sum_probs=113.5
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---------HHHHHHHHHH
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---------VCWHVYGLLY 87 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---------~~~~~lg~~~ 87 (900)
..+.+.=..++|.++. +.+| |+..|.+++......-.++-|...|-+.-. .+.-. .--...+.+-
T Consensus 671 ~~Lve~vgledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 671 MNLVEAVGLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHHhchHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHh
Confidence 3344444455555443 3344 689999999888777777777666654322 11110 0012234444
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLS-LLQAQMRDLTGFVETRQQLLTL--KPNHRMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A 164 (900)
.--|++++|.+.|-.+=+ ++|| .++...|||-...+.++.--.- +.....+|..+|..+..+..|++|
T Consensus 745 ~~~g~feeaek~yld~dr---------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADR---------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhhcchhHhhhhhhccch---------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999988854422 2222 3566677776666555432111 112236788888888888888888
Q ss_pred HHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHH
Q 045355 165 VEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 244 (900)
.+ .|...-. .-.++.++.....|++ ++.....-|++...+-.+|+.+...|.-++|.+
T Consensus 816 ~~---yY~~~~~---------------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 816 AK---YYSYCGD---------------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HH---HHHhccc---------------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 83 3332211 1123444444444443 333344467777888888888888888888887
Q ss_pred HHHH
Q 045355 245 LYRA 248 (900)
Q Consensus 245 ~~~~ 248 (900)
.|-+
T Consensus 874 a~Lr 877 (1189)
T KOG2041|consen 874 AYLR 877 (1189)
T ss_pred HHHh
Confidence 7754
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=4.7 Score=38.54 Aligned_cols=149 Identities=12% Similarity=-0.028 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--Cc--HHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH--GETLSMKGLTLNCMDRKSEAYELVRLGVKNDI--KS--HVC 79 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~--~~~ 79 (900)
.++....|..+..+-+.+..++|+..|..+-+..-.. .-+....|.+....|+...|+..|..+-...| .- ..+
T Consensus 55 as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 55 ASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred cccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4455667888888888888888888888766543332 23556677788888888888888888765432 21 223
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNAL-RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSH 155 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (900)
...-+.++...|-|++-..-.+..- ..+|-...+.-.||..-.+.|++.+|...|..+.. +.+.+......+.+.
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 4555667778888877665544321 22344455667788888888888888888887766 444444444444443
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.95 E-value=0.092 Score=34.17 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+|..+|.++...|++++|+.+|+++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665553
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.88 E-value=0.096 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 045355 416 LYSVKSRILKHAGDLAAAATLADEARCMDL 445 (900)
Q Consensus 416 ~~~~la~i~~~~G~~~eA~~~~~~al~ldp 445 (900)
++..+|.++..+|++++|..+++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.88 E-value=0.091 Score=51.92 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=57.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh
Q 045355 389 HYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY 449 (900)
Q Consensus 389 ~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~ 449 (900)
.....++.+.|.+.|.++++..|....-|+.+|....+.|+++.|...|++.+++||.|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456899999999999999999999999999999999999999999999999999999874
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.80 E-value=0.64 Score=39.82 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhcC
Q 045355 64 ELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN--IEILRDLSLLQAQMRD 126 (900)
Q Consensus 64 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 126 (900)
..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455555555555555555555555555555555555555555443 3333333344444443
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=1.6 Score=49.47 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=103.0
Q ss_pred hhccHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 21 ETKQYKK-GLKAADAILKKFPEHGETLSM--KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 21 ~~g~~~~-Al~~~~~~l~~~p~~~~~~~~--lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
..+.... ++..+...+..+|.+++.+.. +...+...+....+.-.+...+..+|.+..+...+|......|....++
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 3333333 666666666678888887543 4777778889989999999999999999999999999888888777776
Q ss_pred HHHHH-HHhhCCCcHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 98 KCYRN-ALRIDPDNIEILRDL------SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 98 ~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
..+.. +....|++......+ +.....+|+..++.....++....|.++.....+...
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 66655 888889988876665 7777788888888889999999999887655544443
No 317
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.61 E-value=15 Score=41.17 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 11 NLFKLIVKSYET-KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR-KSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 11 ~l~~~a~~~~~~-g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
.++..=..+... +.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|..++.++++.+|+++..|..+-
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 344444445544 458999999999999999999999999988888776 89999999999999999998885443
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.59 E-value=0.31 Score=53.82 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCcHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCM---DRKSEAYELVRLGVKNDIKSHVCWH 81 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~ 81 (900)
||+.....+..+...+..+....++..|.+++...|.....+...+.++... |+.-.|+.-...+++++|....+|+
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 4455555566666666666777788888888888888777777777766654 4556677777777777777777777
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~ 110 (900)
.++.++...+++.+|+.+...+....|.+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 78888778888888877776666666644
No 319
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.58 E-value=1.1 Score=48.28 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----------CCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKF-----------PEHGE-------TLSMKGLTLNCMDRKSEAYELVRLGV 70 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~-----------p~~~~-------~~~~lg~~~~~~g~~~eA~~~~~~al 70 (900)
-...++.|..+|++|+|..|..-|..+|+.. |...+ +-..+..||.++++.+-|+....+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 3455677888999999988888888887742 22111 22346677888888888888888888
Q ss_pred HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 045355 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNA 103 (900)
Q Consensus 71 ~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~a 103 (900)
..+|....-+...+.+++.+.+|.+|...+--+
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777777888888887777765443
No 320
>PRK10941 hypothetical protein; Provisional
Probab=93.54 E-value=0.62 Score=48.86 Aligned_cols=70 Identities=13% Similarity=-0.085 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh
Q 045355 380 LWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY 449 (900)
Q Consensus 380 ~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~ 449 (900)
...+.++-.+|...++++.|+.+.+..+...|+++.-+..+|.+|.++|.+..|...++..++..|+++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3356677788899999999999999999999999999999999999999999999999999999999984
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.27 E-value=2.9 Score=39.00 Aligned_cols=77 Identities=14% Similarity=-0.062 Sum_probs=50.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCH
Q 045355 51 LTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDL 127 (900)
Q Consensus 51 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 127 (900)
..-...++.+++..++...--+.|+.+..-..-|.++...|+|.+|+..|+....-.+..+...-.++.|+..+||.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344666777777666666667777777777777777777777777777776666666666666666666666653
No 322
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=5.2 Score=43.60 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHcCCCcHH
Q 045355 12 LFKLIVKSYETKQYK-KGLKAADAILKKFPEHGETLSMKGLTLNCM------------DRKSEAYELVRLGVKNDIKSHV 78 (900)
Q Consensus 12 l~~~a~~~~~~g~~~-~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~------------g~~~eA~~~~~~al~~~p~~~~ 78 (900)
++.......+.|.|+ ++++.=.+++..+|+...+|...-.++... .-.++-+.+...+++.+|++..
T Consensus 31 ~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~ 110 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG 110 (421)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence 344455555666664 577777888899999888876654444322 2356677888899999999999
Q ss_pred HHHHHHHHHHhccC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 79 CWHVYGLLYRSDRE--YREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 79 ~~~~lg~~~~~~g~--~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
+|+.+..++.+.+. +..=++..+++++.+|.|..+|...-.+..+ .....+=+++..+++..++.+..+|....
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs 190 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRS 190 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHH
Confidence 99999999987664 6888999999999999998887554443332 22356778889999999999999999887
Q ss_pred HHHH
Q 045355 153 VSHH 156 (900)
Q Consensus 153 ~~~~ 156 (900)
.++.
T Consensus 191 ~lL~ 194 (421)
T KOG0529|consen 191 LLLS 194 (421)
T ss_pred HHHH
Confidence 7766
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.21 E-value=0.9 Score=46.04 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHHH----hCCCC---HHHHHHHHHHHHhCCCHHH-------HHHHHHHHHHcC--C----CcHHHHHH
Q 045355 23 KQYKKGLKAADAILK----KFPEH---GETLSMKGLTLNCMDRKSE-------AYELVRLGVKND--I----KSHVCWHV 82 (900)
Q Consensus 23 g~~~~Al~~~~~~l~----~~p~~---~~~~~~lg~~~~~~g~~~e-------A~~~~~~al~~~--p----~~~~~~~~ 82 (900)
..+++|+..|.-++- ..+++ +..+..+|++|...|+.+. |.+.|.+++... | +.....+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 456666666665554 11121 3455666777777776443 333333333321 1 12345566
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhC
Q 045355 83 YGLLYRSDREYREAIKCYRNALRID 107 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~ 107 (900)
+|.+.++.|++++|+.+|.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 6777777777777777777766543
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.14 E-value=3 Score=38.89 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..+......++..++..+++.+--..|+.++.-..-|.++...|++.+|+..++......+..+.+--.++.|+...
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45566666667899999999999887799999999999999999999999999999999988888888888888888888
Q ss_pred cCH
Q 045355 91 REY 93 (900)
Q Consensus 91 g~~ 93 (900)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 874
No 325
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=20 Score=41.22 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHG------ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
-+++.|..+++.++|..+++.|...+...|.+. .....++.||..+.+.+.|.+++++|-+.+|.++.+....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 468899999999999999999999999877653 45677889999999999999999999999999999998888
Q ss_pred HHHHhccCHHHHHHHHHHHHhh
Q 045355 85 LLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~ 106 (900)
.+....|+-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8999999999999998877654
No 326
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.05 E-value=21 Score=41.36 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=92.1
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 045355 20 YETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKC 99 (900)
Q Consensus 20 ~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~ 99 (900)
.+.|+|. ++++.++.-.+.... ...+.+-.--|++++|.+.|-.+-+.+ .-..++...|+|-.-.+.
T Consensus 716 Vrc~dY~-Gik~vkrl~~i~s~~----~q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL 782 (1189)
T KOG2041|consen 716 VRCGDYA-GIKLVKRLRTIHSKE----QQRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQL 782 (1189)
T ss_pred hhhcccc-chhHHHHhhhhhhHH----HHhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHH
Confidence 3557774 455555543333221 234445555688888888886553322 122345566777666665
Q ss_pred HHHHHhhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q 045355 100 YRNALRID--PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED 177 (900)
Q Consensus 100 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~ 177 (900)
++..-.-+ ..-.++++.+|..+..+..|++|.++|...-. .-+++.+++....|++-. .+...+
T Consensus 783 ~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~L-- 848 (1189)
T KOG2041|consen 783 IRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTL-- 848 (1189)
T ss_pred HHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhc--
Confidence 54421111 11235788888888888888888888875421 224455666666665543 222222
Q ss_pred CCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 178 DYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHK 214 (900)
Q Consensus 178 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~ 214 (900)
|+.++.+-.+|..+...|.-++|.+.+-+
T Consensus 849 --------pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 --------PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --------CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 44456666777777777777777776654
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=5.4 Score=38.10 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh----hHHHHHHHHH
Q 045355 385 FLAQHYDRRGQYDVALSKIDEAIEHTPTV--IDLYSVKSRILKHAGDLAAAATLADEARCMDLADR----YVNSECVKRM 458 (900)
Q Consensus 385 ~la~~y~~~g~~~~Al~~~~~al~~~P~~--~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~----~l~~~~a~~~ 458 (900)
.-+.-....+..++|+..|...-+..-.. +-+.+..|.+....|+...|+..|+++-.-.|... ....+.+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 33444556889999999998765543322 34677889999999999999999999876654432 4456678888
Q ss_pred HHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 045355 459 LQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEK 518 (900)
Q Consensus 459 l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~ 518 (900)
.-+|.+++-...+.-...++.+.-. ..-..+|-+-++.|++..|.+.|.+|..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~-------sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRH-------SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHH-------HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999999988877766665554321 1223789999999999999999988876
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.87 E-value=0.84 Score=40.40 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------CCCc----hHHHH
Q 045355 350 LEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH-------TPTV----IDLYS 418 (900)
Q Consensus 350 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~-------~P~~----~~~~~ 418 (900)
++++...+..++....+.|....-+......+++-.|+..+..+|+|++++...++++.. +.+. +.+.+
T Consensus 25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVf 104 (144)
T PF12968_consen 25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVF 104 (144)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 334444444445544444432222223334457778899999999999998888887753 3333 33456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 419 VKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 419 ~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
.+|..+...|+.++|+..|+.+-++
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7888899999999999999988764
No 329
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.76 E-value=2.2 Score=52.97 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLK------AADAIL-KKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN------- 72 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~------~~~~~l-~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------- 72 (900)
......+..+......|.+.+|.. .+.+.. ...|+.+..+..++.++...|++++|+..-.++.-.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 344566778878888888887777 555433 368888999999999999999999999998887643
Q ss_pred -CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 045355 73 -DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI--------DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN 143 (900)
Q Consensus 73 -~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (900)
.|+....+..++...+..++...|+..+.++..+ .|.-..+..+++.++..+++++.|+.+.+.++...-.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 3455667888888889999999999999988765 3455556788888888999999999999999885421
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHH
Q 045355 144 --------HRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 144 --------~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
....+..++..+...+++..|+.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 22334555666666666666653
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.68 E-value=2 Score=43.49 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=53.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 375 PPSTLLWTLFFLAQHYDRRGQYD-------VALSKIDEAIEHTP------TVIDLYSVKSRILKHAGDLAAAATLADEAR 441 (900)
Q Consensus 375 ~~~~~~~a~~~la~~y~~~g~~~-------~Al~~~~~al~~~P------~~~~~~~~la~i~~~~G~~~eA~~~~~~al 441 (900)
.+...+.++..+|++|...|+.+ .|++.|.++++... +...+.+.+|.+..+.|++++|..+|.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44555667888999999999854 55556666655432 335688899999999999999999999998
Q ss_pred hcCc
Q 045355 442 CMDL 445 (900)
Q Consensus 442 ~ldp 445 (900)
....
T Consensus 193 ~~~~ 196 (214)
T PF09986_consen 193 GSKK 196 (214)
T ss_pred cCCC
Confidence 7643
No 331
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=5.4 Score=45.17 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh-------------------
Q 045355 57 DRKSEAYELVRLGVKN------------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALR------------------- 105 (900)
Q Consensus 57 g~~~eA~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~------------------- 105 (900)
..|++|...|.-++.. .|-+...+..++.+...+|+.+-|....+++|-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666665555442 344445566667777777776666665555541
Q ss_pred --hCCCcHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhccC
Q 045355 106 --IDPDNIEI---LRDLSLLQAQMRDLTGFVETRQQLLTLKPN-HRMNWIGFAVSHHLN-SNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 106 --~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~l~~~ 178 (900)
+.|.|-.. ++.....+.+.|-+..|.++.+-++.++|. ++-....+..+|... .+|+=-++..+.++..-...
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 12333322 233334456678899999999999999998 777666666655543 55655554444443322211
Q ss_pred CCCCcchhchhHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCC
Q 045355 179 YPPDNERCEHGEMLLYKISLLEECGS---FERALAEMHKKESKIVD 221 (900)
Q Consensus 179 ~~~~~~~~~~~~~~~~la~~~~~~g~---~~~Al~~l~~al~~~p~ 221 (900)
..++ ...-..++..|..... -+.|+..+.+|+...|.
T Consensus 412 ~~PN------~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPN------FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCC------chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 1111 1223344555544443 34556666666665553
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.34 E-value=2.5 Score=38.61 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 43 GETLSMKGLTLNCMDR---KSEAYELVRLGVK-NDIK-SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~---~~eA~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
.+..+.+++++....+ ..+.+.+++..++ -+|. .-+|.+.++..+.+.|+|+.++.+.+..++..|+|.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566777777776653 4567778887775 3343 35677788888888888888888888888888888776543
No 333
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=24 Score=40.03 Aligned_cols=243 Identities=15% Similarity=0.098 Sum_probs=137.9
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 187 EHGEMLLYKISLLEECGSFERALAEMHKKESKIVD--KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 187 ~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
..+-..+..+.++...|+.+.|+..++..++..-. ..-.++.+|.++.-+.+|..|...+..+.+.+.-+...|..++
T Consensus 265 ~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 34466777888888888888888888877761111 1234567888888999999999999999988766666666665
Q ss_pred HHhcccccCC-CCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhh-hcCCCh--hhhchhhh
Q 045355 265 KCLGLYRDNG-NYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLL-TKGVPS--LFSDLSPL 340 (900)
Q Consensus 265 ~~~~l~~~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l-~~~~p~--~~~~L~~l 340 (900)
-|..+..... ....|+.+.+..+++......-+.. +.+++.-.. ...++.|....- ....+. -+..+..+
T Consensus 345 ~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~--K~~P~E~f~----~RKverf~~~~~~~~~~~la~P~~El~Y~ 418 (546)
T KOG3783|consen 345 GCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAG--KNLPLEKFI----VRKVERFVKRGPLNASILLASPYYELAYF 418 (546)
T ss_pred HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhcc--ccCchhHHH----HHHHHHHhccccccccccccchHHHHHHH
Confidence 3322322110 0112344444444443332211100 111111110 111222222210 000111 11233333
Q ss_pred hcCCCh--HHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------C-
Q 045355 341 YDQPGK--ADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHT------P- 411 (900)
Q Consensus 341 y~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~------P- 411 (900)
|..-.. ....++ +..... ++. .++++....-++.+|.++..+|+...|..+|..+++.. +
T Consensus 419 Wngf~~~s~~~l~k----~~~~~~-~~~------~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 419 WNGFSRMSKNELEK----MRAELE-NPK------IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred HhhcccCChhhHHH----HHHHHh-ccC------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 332111 111221 111111 111 11344444467889999999999999999999888432 2
Q ss_pred CchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcC
Q 045355 412 TVIDLYSVKSRILKHAGD-LAAAATLADEARCMDLA 446 (900)
Q Consensus 412 ~~~~~~~~la~i~~~~G~-~~eA~~~~~~al~ldp~ 446 (900)
-.|-+++.+|..|..+|. ..++..++.+|.+...+
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 347799999999999998 99999999999987543
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.09 E-value=2.2 Score=41.89 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 112 EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH---RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
.++..+|..|.+.||++.|++.|.++....... .+.++.+..+....|++......+......+.... ++ ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~--d~--~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG--DW--ERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--hH--HHH
Confidence 345666666777777777777766665543221 24455666666666777776655555555444321 11 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
..+..+.|..+...++|..|-..|-.+
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 223334444445555555555555444
No 335
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=20 Score=38.08 Aligned_cols=277 Identities=13% Similarity=0.047 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCc-
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKK--FPEH--------GETLSMKGLTLNCMDRKSEAYELVRLGVK---NDIKS- 76 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~--~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~p~~- 76 (900)
..+..+......+++++++..+.+++.. .|.+ ..+...+|..|...|+.++-..++...-. .-+..
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 4488888888899999999999999884 2332 23667899999999998876666554322 22221
Q ss_pred -HHHHHHHHH-HHHhccCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHh----C--C
Q 045355 77 -HVCWHVYGL-LYRSDREYREAIKCYRNALRIDPDNIE------ILRDLSLLQAQMRDLTGFVETRQQLLTL----K--P 142 (900)
Q Consensus 77 -~~~~~~lg~-~~~~~g~~~eAi~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p 142 (900)
......+-. +....+..+.-+.....+++....... .-..++.+|...++|.+|+.....+++- + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 111112222 222334455666666666655433222 2345788999999999999988777652 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc---
Q 045355 143 NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI--- 219 (900)
Q Consensus 143 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~--- 219 (900)
.-.+....-..+|+...+...|...|...+..-..-.-| ......+-+.-|.++....+|.-|..+|-++++-.
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp---PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP---PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC---HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 334556666788899999988887666554432211100 01223333444666677789999999998887642
Q ss_pred CCHHHH---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHh
Q 045355 220 VDKLAY---KEQEVSLLVKIGRLEEAAELY--RALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ 294 (900)
Q Consensus 220 p~~~~~---~~~la~~~~~~g~~~eA~~~~--~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~ 294 (900)
.++..+ +..+-.+-..++..++--.+. +.+++....+..+...++.+++ ..+..+++.|+.-|..-+..
T Consensus 243 ~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~------nRSLkdF~~AL~~yk~eL~~ 316 (411)
T KOG1463|consen 243 DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFG------NRSLKDFEKALADYKKELAE 316 (411)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhc------CCcHHHHHHHHHHhHHHHhc
Confidence 122232 333333444566666544443 4566666677778888877763 13455667776666655444
Q ss_pred cC
Q 045355 295 YT 296 (900)
Q Consensus 295 ~p 296 (900)
+|
T Consensus 317 D~ 318 (411)
T KOG1463|consen 317 DP 318 (411)
T ss_pred Ch
Confidence 43
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.49 E-value=4 Score=37.31 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHH
Q 045355 145 RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLA 224 (900)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~ 224 (900)
.+..++++.++....+.+.-.+=+..++..++..++ ...-+..++++.-+.+.++|+.++.+++..++..|++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~-----~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHP-----ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCc-----ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 355666777776665554444333444444431111 223466677777777777777777777777777777666
Q ss_pred HHHH
Q 045355 225 YKEQ 228 (900)
Q Consensus 225 ~~~~ 228 (900)
+...
T Consensus 107 a~~L 110 (149)
T KOG3364|consen 107 ALEL 110 (149)
T ss_pred HHHH
Confidence 5443
No 337
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.21 E-value=0.35 Score=47.94 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=35.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 045355 54 NCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 54 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~ 110 (900)
...++.+.|.++|.+++.+-|.....|+.+|......|+++.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345556666666666666666666666666666666666666666666666666554
No 338
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.15 E-value=2.3 Score=52.80 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhCCCHHHHHH------HHHHHH-HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--------CCC
Q 045355 45 TLSMKGLTLNCMDRKSEAYE------LVRLGV-KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI--------DPD 109 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~------~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~--------~p~ 109 (900)
-....|......|.+.+|.+ ++.... .+.|....++..++.++...|++++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34556666777788888877 444322 357888999999999999999999999988877643 245
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTL--------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
....+.+++......++...|+..+.++..+ .|.-.....++..+++..++++.|+..++........-..+
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5667888998889999999999999888764 34444556778888888899999997777655532221111
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKES 217 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~ 217 (900)
.. ......+..+++++...+++..|+.+.+....
T Consensus 1094 ~~--l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1094 KE--LETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cc--hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 11 34455666667777777777777666655443
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.95 E-value=1.4 Score=36.05 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMK---GLTLNCMDRKSEAYELVRLGV 70 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~l---g~~~~~~g~~~eA~~~~~~al 70 (900)
...+..|+.+|+..+.++|+..+.++|++.++.++-+..+ ..+|...|++.+.+.+.-+=+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888888888888888887776655444 456677788888777655443
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=36 Score=39.10 Aligned_cols=134 Identities=18% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhCCCcHHHHHH--HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 96 AIKCYRNALRIDPDNIEILRD--LSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
++..+...+.++|.++..+.. ++..+...++...+.-.....+..+|++.....+++.+....|....+...+..+-.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555555555555555322 355555566666666666666666666666666666666665555555433332111
Q ss_pred hhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 045355 174 TLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSL 232 (900)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~ 232 (900)
..... +.....+...++.++......|+..++...++++....|.++.+...+...
T Consensus 130 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPD---NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcc---hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 11100 000011111222357777888888899999999998888886665544444
No 341
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.72 E-value=37 Score=39.19 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=105.5
Q ss_pred HHHHHHHhCCHHHHHHHHH------HH----HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHH
Q 045355 386 LAQHYDRRGQYDVALSKID------EA----IEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECV 455 (900)
Q Consensus 386 la~~y~~~g~~~~Al~~~~------~a----l~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a 455 (900)
.|..+...|+.++|+..+- -+ -+++....+.....+.-+.....+.-|.+.|.+.-.+ ...+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiV 780 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLV 780 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHh
Confidence 4566777888888887542 22 2334455666677777777777777777777765332 2345
Q ss_pred HHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 045355 456 KRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYE-----LASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDF 530 (900)
Q Consensus 456 ~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~-----~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df 530 (900)
.+....+++.+|..+.....+ -..++|..-.-|.. .+.-.+|.+.|+..+|...++++...- +.+..|.-
T Consensus 781 qlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna--v~E~Rf~D 855 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA--VAESRFND 855 (1081)
T ss_pred hheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh--hhhhhhcc
Confidence 666778888888666544333 23344444444542 567789999999999999998875532 22333322
Q ss_pred HHHh---hhhccHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 045355 531 HSYC---LRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPP 578 (900)
Q Consensus 531 ~~y~---~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l~d~~~ 578 (900)
..|- +.+--+..|-.-...-=.+..+..|..|-+-+.-+|-+|..-..
T Consensus 856 A~y~yw~L~~q~Ld~~~~k~~~lftlakq~kFl~a~~l~~~~~d~l~~l~~ 906 (1081)
T KOG1538|consen 856 AAYYYWMLSMQCLDIAQSKVKILFTLAKQSKFLGAYRLARHAYDKLRGLYI 906 (1081)
T ss_pred chhHHHHhhhhhhhhhhhhhhheeehhhccchhhhhhHHHHHhhhhhccCC
Confidence 2221 22222222211111112345666777777777777766665543
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.67 E-value=33 Score=38.57 Aligned_cols=223 Identities=11% Similarity=0.078 Sum_probs=140.5
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNC------------------MDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~------------------~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
++|-.+.-..+|.+-|....+...+++.-|.+-+. ..+..-...++.+++... .+..+++.
T Consensus 26 ~~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~e 104 (711)
T COG1747 26 RQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLE 104 (711)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHH
Confidence 34444555556666665555555555554543332 223344455566666643 45567889
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK-P-----NHRMNWIGFAVSHH 156 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~la~~~~ 156 (900)
++.+|... ..++-...+++.++.+-++...-+.|+..|.+ ++...+...|.+++... | .-.+.|..+.. .
T Consensus 105 l~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~ 180 (711)
T COG1747 105 LLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--L 180 (711)
T ss_pred HHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--h
Confidence 99999988 55777888899999999999889999998887 88899999999988642 2 22234544322 1
Q ss_pred HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 045355 157 LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEML-LYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVK 235 (900)
Q Consensus 157 ~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~ 235 (900)
-..+.+.-+..+...+..+.. ....+. -..-.-|....++.+|++.+...++.+..+..+...+...+..
T Consensus 181 i~dD~D~fl~l~~kiqt~lg~---------~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 181 IGDDKDFFLRLQKKIQTKLGE---------GRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 234455555444444433322 122333 3334566778899999999999999988888777776665554
Q ss_pred --------------------cCCHHHHHHHHHHHHHhCCCCH
Q 045355 236 --------------------IGRLEEAAELYRALLSMNPDNY 257 (900)
Q Consensus 236 --------------------~g~~~eA~~~~~~al~~~p~~~ 257 (900)
-.++-+++.-|+..+..+..|.
T Consensus 252 ~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 252 KYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred HhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 3345555555555555555443
No 343
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.48 E-value=0.54 Score=48.67 Aligned_cols=86 Identities=12% Similarity=0.204 Sum_probs=56.1
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 66 VRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD-LSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 66 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
|.++....|+++..|..++......|-|.+--..|.+++...|.|.+.|.. -+.-+...++++.+...+.+.++.+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444556666667666666666666777777777777777777776655 3344556667777777777777777777
Q ss_pred HHHHHHH
Q 045355 145 RMNWIGF 151 (900)
Q Consensus 145 ~~~~~~l 151 (900)
+..|+..
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 7666543
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=18 Score=41.30 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CC----------------CchHHHH---HHHHHHHHcCCHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEH-----TP----------------TVIDLYS---VKSRILKHAGDLAAAATLA 437 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~-----~P----------------~~~~~~~---~la~i~~~~G~~~eA~~~~ 437 (900)
.+..+|.++...|+.+-|...++++|=. .| .+-.+|. ..-.-+.+.|=+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6788999999999999999988888731 22 3333333 3344567889999999999
Q ss_pred HHHHhcCcC-Ch-hHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCC---hHHHHHH
Q 045355 438 DEARCMDLA-DR-YVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGD---LGRALKK 512 (900)
Q Consensus 438 ~~al~ldp~-d~-~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~---~~~Alk~ 512 (900)
+-.+++||. || .+...+-.|.+++.++.--+++...... ...++..-.+-|-..++..|.+... -..|+..
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~----~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~ 441 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN----MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNA 441 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh----hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHH
Confidence 999999999 88 4555555677888888766655543322 1112221222245688888988887 6788999
Q ss_pred HHHHHHHhhh
Q 045355 513 FLAVEKHYAD 522 (900)
Q Consensus 513 ~~~v~~~~~~ 522 (900)
+.++.++|+.
T Consensus 442 l~qAl~~~P~ 451 (665)
T KOG2422|consen 442 LLQALKHHPL 451 (665)
T ss_pred HHHHHHhCcH
Confidence 9999998864
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.05 E-value=12 Score=42.56 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH
Q 045355 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (900)
+...|..+|.....+|+++-|..||+++- -+..|..+|.-.|+-+.-
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHH
Confidence 44556666666666666666666665541 133444445555554333
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.77 E-value=0.63 Score=48.18 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=64.3
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV-YGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
+.|+++..|...+......|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.++++.+|+++.+|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 467778888887777777788888888888888888888888866 4556677888888888888888888888888765
Q ss_pred HHH
Q 045355 117 LSL 119 (900)
Q Consensus 117 la~ 119 (900)
.-.
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 347
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=4.7 Score=43.91 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=100.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc----CHHHH
Q 045355 23 KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR--KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR----EYREA 96 (900)
Q Consensus 23 g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA 96 (900)
...++-+.+...+++.+|+.-.+|+.+..++.+.+. +..=+.+++++++.+|.+..+|+..-.+..... ...+=
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 366778888999999999999999999999998764 688899999999999999999976665554433 35667
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHH------hcC------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 97 IKCYRNALRIDPDNIEILRDLSLLQAQ------MRD------LTGFVETRQQLLTLKPNHRMNWIGF 151 (900)
Q Consensus 97 i~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l 151 (900)
++...+++..++.|..+|.....++.. .|+ ...-++....++-.+|++..+|+-.
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 888889999999999999888777653 231 2233455566677789998888763
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=3.2 Score=42.96 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
..++=..+...++++.|..+-++.+.++|+++.-++..|.+|.++|.+..|++.+...++..|+.+.+-....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999887655443
No 349
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.91 E-value=33 Score=35.99 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHc------CCCcHHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKK-----FPEHGETLSMKGLTLNCMDRKS-EAYELVRLGVKN------DIKSHVC 79 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g~~~-eA~~~~~~al~~------~p~~~~~ 79 (900)
++.-+..+++.|++.-|..+..-+++. .|.+.+....++.++...+.-+ +-..+.+++++- .-.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 445556667788888887776665552 3444555566666666654332 233444444432 2235677
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHc
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS-HHLN 158 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~ 158 (900)
++.+|..+...|++.+|..+|-.. ++.......- -.+.....-.|...+.+...+.+ |...
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~-------------ll~~~~~~~~~~e~dlfi~RaVL~yL~l 154 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVM-------------LLEEWSTKGYPSEADLFIARAVLQYLCL 154 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHH-------------HHHHHHHHTSS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHH-------------HHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 888888888888888887776321 2222211100 00111223456666666666655 4455
Q ss_pred CCHHHHHHHHHHHHhh
Q 045355 159 SNGSKAVEILEAYEGT 174 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~ 174 (900)
++...|...+..|.+.
T Consensus 155 ~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 155 GNLRDANELFDTFTSK 170 (260)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999888888766
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=61 Score=38.89 Aligned_cols=251 Identities=12% Similarity=0.002 Sum_probs=130.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHhcc
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEH-GETLSMKGLTLNCMDRKSEAYELVRLGVKN-DIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g 91 (900)
.....+++..-|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+.. +|....-- |....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHH
Confidence 3445566777788887776652 222222 345666788888889999999888888763 44322111 12333
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHH
Q 045355 92 EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMN---WIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l 168 (900)
+..+-..+++...+..-.+.+--..|-.+|..+++.++-.+..+ ..+. ... .-..-.++...+-+++|.-+-
T Consensus 412 ~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCDK-GEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh----cCCC-cceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 33444445555555555555556667788888888766544433 2331 110 011122333344445554222
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD-KLAYKEQEVSLLVKIGRLEEAAELYR 247 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~ 247 (900)
..+.. --..+-.++...|+|++|+.++... .|+ -.......|..++.. .+++-...+-
T Consensus 487 ~k~~~-----------------he~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili 545 (933)
T KOG2114|consen 487 TKFKK-----------------HEWVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILI 545 (933)
T ss_pred HHhcc-----------------CHHHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHH
Confidence 21111 0122345667789999999988753 222 234455566666553 4555555555
Q ss_pred HHHHhC--CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh
Q 045355 248 ALLSMN--PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV 301 (900)
Q Consensus 248 ~al~~~--p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 301 (900)
+.+... +.........-... +...+-.+++......++.+.+..|+++..
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~----~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~ 597 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSI----EFIGIFSQNYQILLNFLESMSEISPDSEEV 597 (933)
T ss_pred HHHhhcCCCCCCchhhcCccch----hheeeeccCHHHHHHHHHHHHhcCCCchhh
Confidence 555432 11111111100000 000133566777777777788888877643
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.80 E-value=0.84 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
.++..+|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566666777777777777766666654
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.71 E-value=14 Score=44.13 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcCChhHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM---DLADRYVNSECVKRM 458 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l---dp~d~~l~~~~a~~~ 458 (900)
+....|.-....|++++|+.+|. -.|+++.+++.+.+.+.- .+... ....-
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~---------------------La~~~d~vl~lln~~Ls~~l~~~~~~-----~~~~s 469 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYH---------------------LAEEYDKVLSLLNRLLSQVLSQPSSS-----SLSDS 469 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHH---------------------HTT-HHHHHHHHHHHHHHHHHCSSTS-----SSSST
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHcCcccc-----ccccc
Confidence 44556666777777777777665 345677777766666542 11110 00000
Q ss_pred HHcCChHHHHHHHHHhcccCCc--CCChhhhhHHHHHHHH--HHHHHHcCChHHHHHHHHHHH
Q 045355 459 LQADQVSLAEKTAALFTKDGDQ--HNNLHDMQCMWYELAS--GESYFRQGDLGRALKKFLAVE 517 (900)
Q Consensus 459 l~~g~~eeA~~~~~~~~~~~~~--~~~l~~~q~~w~~~~l--g~~y~r~g~~~~Alk~~~~v~ 517 (900)
.+.+=...|..++..+...+.. ..........-.+..+ ..-++..|+|..|+..+.++-
T Consensus 470 ~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 470 ERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 0011133344444444442211 0111111222222233 445678999999998886653
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.20 E-value=12 Score=41.50 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045355 147 NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKES 217 (900)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~ 217 (900)
+..++.+++..+|+|..|+++++..+-.-..-. ....+-+..++++.|-+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~--~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLY--TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhh--ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999987765431110000 011245678899999999999999999999998764
No 354
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=22 Score=38.82 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=96.6
Q ss_pred ChHHHHHHHHHH--HHHhhccHHHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Q 045355 6 PSKDANLFKLIV--KSYETKQYKKGLKAADAILKKFP-E--------HGETLSMKGLTLNCMDRKSEAYELVRLGVKN-- 72 (900)
Q Consensus 6 ~~~~~~l~~~a~--~~~~~g~~~~Al~~~~~~l~~~p-~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-- 72 (900)
++....++.... .++.+++|++|.++-+..+...- . .+..|+.+..++...|+...-...+...+..
T Consensus 121 ~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt 200 (493)
T KOG2581|consen 121 PAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT 200 (493)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 333334443333 34467999999998887765311 1 2457788888888899977766666655542
Q ss_pred ---CC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHh--hCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 73 ---DI-KSHVCWHVYGLLYRSDREYREAIKCYRNALR--IDPD--NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 73 ---~p-~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~--~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
+. ........+-..|...+.|+.|-+...+..- ...+ ....++.+|.+..-+++|..|.+++.+++...|++
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 22 1233445666788888999999988777641 1112 23457889999999999999999999999999974
Q ss_pred H
Q 045355 145 R 145 (900)
Q Consensus 145 ~ 145 (900)
.
T Consensus 281 ~ 281 (493)
T KOG2581|consen 281 A 281 (493)
T ss_pred h
Confidence 3
No 355
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.94 E-value=1.1 Score=31.51 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEH 409 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~ 409 (900)
++..+|.+|...|++++|+.++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 5678888888888888888888888765
No 356
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.56 E-value=2.1 Score=47.59 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD---REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
.+....|+..|.+++...|....++.+.+.++... |+.-.|+.....+++++|....+++.|+.++.+++++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566788888888888888888887777777654 455566666677888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCH
Q 045355 133 TRQQLLTLKPNHR 145 (900)
Q Consensus 133 ~~~~al~~~p~~~ 145 (900)
....+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 8877777777543
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=41 Score=34.93 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=125.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPE--------HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
+..|......+++++|+..|.++|..... ...+...++.+|...|++..--+.+.. +..+|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~-------sre~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS-------SREAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh-------hHHHHHHhc
Confidence 77888888999999999999999876221 123566778888888877654444332 222221111
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDP---DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
. ....+..+..++..| ++.+-...+....+.-.+ .--+..++. ..-..++.+++..|.|
T Consensus 80 -----k---~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-----rEkr~fLr~-----~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 80 -----K---PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-----REKRKFLRL-----ELECKLIYLLYKTGKY 141 (421)
T ss_pred -----c---hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-----HHHHHHHHH-----HHHHHHHHHHHhcccH
Confidence 1 112233333444433 333332333222222111 111112211 2234678889999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCHHHHH--HHHHHHHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK-----IVDKLAYK--EQEVSLLV 234 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~-----~p~~~~~~--~~la~~~~ 234 (900)
.+|+..+.....-++.-. ..+....+++.-..+|.+..+..++...+..+-.. +|....+. ..-|.++.
T Consensus 142 sdalalIn~ll~ElKk~D----DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 142 SDALALINPLLHELKKYD----DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred HHHHHHHHHHHHHHHhhc----CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 999988777665554321 12566678888899999999988888877765432 45443332 33355666
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 045355 235 KIGRLEEAAELYRALLSM 252 (900)
Q Consensus 235 ~~g~~~eA~~~~~~al~~ 252 (900)
.-.+|.-|..+|-++++-
T Consensus 218 dd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 218 DDRDYKTASSYFIEALEG 235 (421)
T ss_pred ccccchhHHHHHHHHHhc
Confidence 777899999999888864
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.12 E-value=2.1 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=44.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPT---------VIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~---------~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
..+.|+|..|++.+.+.++.... ...+...+|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34689999999988888876442 2356788999999999999999999999987
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.09 E-value=34 Score=38.96 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=50.9
Q ss_pred hhccHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q 045355 21 ETKQYKKGLKAAD--AILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIK 98 (900)
Q Consensus 21 ~~g~~~~Al~~~~--~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~ 98 (900)
-.|++++++.... +++..-| .+-....+..+...|.++.|+.+.+ ++...+. +..+.|+.+.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---HHHHCT-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---HHHhcCCHHHHHH
Confidence 4455666555443 2221222 2233444555555666655555432 1222222 2345566666555
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045355 99 CYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (900)
..+ ..+++..|..||...+..|+++-|.++|+++- -+..+..+|...|+.+.
T Consensus 340 ~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 340 IAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 432 22355566666666666666666666666531 23344455555555433
No 360
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.92 E-value=36 Score=39.29 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=93.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCcHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAI------LKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK--NDIKSHVCWHVYG 84 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~------l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~lg 84 (900)
+..|..+.-.|.+.+|.++|.+. ++.+.+ --++..+.-+...|..++-..+.++-.. .+.+.+. .-+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 33444455567777777766542 111111 0123344445555555554444443222 1222221 345
Q ss_pred HHHHhccCHHHHHHHH----------HHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 85 LLYRSDREYREAIKCY----------RNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~----------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
.++...|+.++|+... +-+-+++....+.+..++..+.....+.-|.+.|.++-. .-.+...
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVql 782 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQL 782 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhh
Confidence 6677778887777643 122233344445555566666666666666666665422 1234455
Q ss_pred HHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 155 HHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 155 ~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
+...++|.+|..+.+..-+ -...+++-.|+.+.+..++++|.+.|.++
T Consensus 783 Hve~~~W~eAFalAe~hPe-------------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPE-------------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eeecccchHhHhhhhhCcc-------------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 6667888888744332111 11256777788888888888887766554
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.86 E-value=68 Score=36.28 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
.+++.++.+|.+. ..++-....++..+.+-++...-..++..|.+ ++...+..+|.+++..
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 5677778888777 55666777777777777777777777777766 7778888888887764
No 362
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.03 E-value=2.6 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCHHHHHHH--HHHHHhhCCC
Q 045355 79 CWHVYGLLYRSDREYREAIKC--YRNALRIDPD 109 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~--~~~al~~~p~ 109 (900)
.|+.+|..+...|++++|+.. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355544443
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.20 E-value=57 Score=33.98 Aligned_cols=101 Identities=17% Similarity=0.010 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTL------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
..++.++++.|.|.+|+.....++.- .|.-...+..-..+|+...+...+..-+...+..-....-| ..-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP---pqlq 205 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP---PQLQ 205 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC---HHHH
Confidence 45677888899999998887766542 34455667777888888888877775555443322211100 0122
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESK 218 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~ 218 (900)
.+.-+.-|.......+|.-|..+|-++++-
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 333344456667778899999988888764
No 364
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=72 Score=34.99 Aligned_cols=203 Identities=18% Similarity=0.097 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------C-C-
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPE-----HGETLSMKGLTLNCMDRKSEAYELVRLGVKN----------D-I- 74 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~-p- 74 (900)
-+.........|-+.+--...-++++.-|. ++..++.....++..|. ++..-+..-+.. + |
T Consensus 33 ~ike~~~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~ 110 (493)
T KOG2581|consen 33 NIKEQLAQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPN 110 (493)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccc
Confidence 344555556666555555555666665553 45666666666666654 444444433310 0 0
Q ss_pred -----C------cHHHH-HHHHHH-HHhccCHHHHHHHHHHHHhh-CCC--------cHHHHHHHHHHHHHhcCHHHHHH
Q 045355 75 -----K------SHVCW-HVYGLL-YRSDREYREAIKCYRNALRI-DPD--------NIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 75 -----~------~~~~~-~~lg~~-~~~~g~~~eAi~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
. ...|| +.++.+ +..++++.+|.++-+..+.. .-. ....|+.+..++...|+...-..
T Consensus 111 t~~a~~~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs 190 (493)
T KOG2581|consen 111 TQSALKRKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRS 190 (493)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 1 12333 334443 34568899998887765432 111 23457778888888888777666
Q ss_pred HHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 133 TRQQLLTLK-----P-NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 133 ~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
.+...+... . +.......+-..|...+.|+.|.+.+. +.. .+......+.....+++|.+..-+++|.
T Consensus 191 ~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvs---K~~---~pe~~snne~ARY~yY~GrIkaiqldYs 264 (493)
T KOG2581|consen 191 FLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVS---KSV---YPEAASNNEWARYLYYLGRIKAIQLDYS 264 (493)
T ss_pred HHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh---ccc---CccccccHHHHHHHHHHhhHHHhhcchh
Confidence 666555432 1 112334455666777788888874332 221 1111112366778888999999999999
Q ss_pred HHHHHHHHHhhhcCCH
Q 045355 207 RALAEMHKKESKIVDK 222 (900)
Q Consensus 207 ~Al~~l~~al~~~p~~ 222 (900)
.|.+++-+++...|..
T Consensus 265 sA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999999999888864
No 365
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=44 Score=34.73 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH---HhccCH---HHH
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLNCM--DRKSEAYELVRLGVKNDIKSHVCWHVYGLLY---RSDREY---REA 96 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~---~~~g~~---~eA 96 (900)
.++-+..++.+++.+|.+-..|...-.++..- .++..-....++.+..|+.+..+|+..-.+. ...+++ ..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45567788999999999999998888777665 5677788888999999999998887655554 223333 333
Q ss_pred HHHHHHHHhhCCCcHHHHHHH---HHHHHHhcC------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 97 IKCYRNALRIDPDNIEILRDL---SLLQAQMRD------LTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 97 i~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
.++-..++..++.|..+|... .......|+ +++-+++....+-.+|++...|.-+-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 444456777889898888766 333333443 4445566666667789998888755433
No 366
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=83.66 E-value=78 Score=35.15 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=102.7
Q ss_pred cCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCCh
Q 045355 427 AGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDL 506 (900)
Q Consensus 427 ~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~ 506 (900)
.+..-+|+-.++.++..+|.|..+...++.+|...|-...|.+.+.... +-.+|---....+-.-....|.+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~--------iK~IQ~DTL~h~~~~r~~~~~~~ 267 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD--------IKNIQLDTLGHLILDRLSTLGPF 267 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC--------hHHHHHHHhHHHHHHHHhccCcc
Confidence 4467789999999999999999999999999999999999988764331 11111111111222223346777
Q ss_pred HHHH-HHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Q 045355 507 GRAL-KKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKL 573 (900)
Q Consensus 507 ~~Al-k~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l 573 (900)
..+. ..+..+.+.|.....+-.++-.-+.+.|+.....+|+++.++|...-.+.-.....+++-.-.
T Consensus 268 ~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~F~~rL~~S~~~~~~~~E~~~l~~~~ 335 (365)
T PF09797_consen 268 KSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIEFRERLRNSLQRAMSRIERLRLSRLL 335 (365)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777 888899999988888888888999999999999999999999887666655555555554433
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.14 E-value=1.7 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHH
Q 045355 383 LFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~ 403 (900)
.+.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554444
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.72 E-value=24 Score=34.95 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 045355 92 EYREAIKCYRNALRID-PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN----HRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 165 (900)
.-++|...|-++-... -+++...+.||..|. ..|.++++..+.+++++.+. +++.+..++.++...|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3366777665543221 246777888887776 67888999999999887543 4678889999999999998874
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.65 E-value=5.5 Score=34.40 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 18 KSYETKQYKKGLKAADAILKKFPEH---------GETLSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 18 ~~~~~g~~~~Al~~~~~~l~~~p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
...+.|+|..|++.+.+.+...... ..++..+|.++...|++++|+..++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666666666665555421111 22334444445555555555555555544
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.27 E-value=27 Score=34.63 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=47.9
Q ss_pred hchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHcCCHHHHH
Q 045355 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD----KLAYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 186 ~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~ 243 (900)
.+.+++.+.+|..|. ..+.++++..|.++++.... +++++..++.++.++|+++.|.
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 355688888888877 67889999999999987543 5889999999999999999884
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=5.2 Score=41.42 Aligned_cols=71 Identities=13% Similarity=-0.069 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
.+=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...++.-|+.+.+-....
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 33445777888999999999999999999888889999999999999999999998888888877644433
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.92 E-value=16 Score=40.68 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHH--HHH--HHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGE--TLS--MKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~--~~~--~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
..+.++..+++.++|..|...++.+...-|.... .+. ..|.-+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4467888999999999999999999886444443 333 3445566788999999999988775
No 373
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.80 E-value=3.7 Score=28.30 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCcC
Q 045355 415 DLYSVKSRILKHAGDLAAAATL--ADEARCMDLA 446 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~--~~~al~ldp~ 446 (900)
+.++.+|-.+..+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3445555555555666666655 3355444443
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.74 E-value=2.2 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 416 LYSVKSRILKHAGDLAAAATLADE 439 (900)
Q Consensus 416 ~~~~la~i~~~~G~~~eA~~~~~~ 439 (900)
+.+.+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998863
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.33 E-value=75 Score=33.34 Aligned_cols=147 Identities=15% Similarity=0.037 Sum_probs=72.0
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHH--HHHHHHHhccCHHHHHHHH
Q 045355 29 LKAADAILKKF------PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWH--VYGLLYRSDREYREAIKCY 100 (900)
Q Consensus 29 l~~~~~~l~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--~lg~~~~~~g~~~eAi~~~ 100 (900)
.++.+++++.. -.+++.+..+|..+...|++.+|..+|-.+ +++.... .+-.
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~--------------- 129 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLE--------------- 129 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHH---------------
Confidence 44555555532 135788899999999999988888777432 1111111 0111
Q ss_pred HHHHhhCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHh----CCC-----------CHH-HHHHHHHHHHHcCCHHH
Q 045355 101 RNALRIDPDNIEILRDLSL-LQAQMRDLTGFVETRQQLLTL----KPN-----------HRM-NWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 101 ~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~----~p~-----------~~~-~~~~la~~~~~~g~~~~ 163 (900)
.-..+-.|...+.+...+. .|...++...|...+....+. .|+ .+. ....+-..-...++.+.
T Consensus 130 ~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~ 209 (260)
T PF04190_consen 130 EWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL 209 (260)
T ss_dssp HHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH
Confidence 1112234555555555554 466778888888877776655 332 221 12222222334455444
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC 202 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~ 202 (900)
-..+.+.|...++.+ +.....+-.+|.+|...
T Consensus 210 F~~L~~~Y~~~L~rd-------~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 210 FKKLCEKYKPSLKRD-------PSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHTHH---HH-------HHTHHHHHHHHHHHH--
T ss_pred HHHHHHHhCcccccc-------HHHHHHHHHHHHHHCCC
Confidence 444444555444433 45556666777777653
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.14 E-value=71 Score=34.17 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
++|+.+-.-++...|..++++-..+..+++-.+...=...--..+-+..++...| ..+-.+++...+.+++.
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~~ 284 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHHH
Confidence 4556655556666777777776666655443221100000000011111222222 22334566666666665
Q ss_pred hC-CCcHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 106 ID-PDNIEILRDLSLLQAQ-----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 106 ~~-p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
.. |.-.+..-.++.++.. .-||..-...|..+..+.|+ +..-.+.+.+.....-...++.
T Consensus 285 ~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa 350 (415)
T COG4941 285 SRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLA 350 (415)
T ss_pred cCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHH
Confidence 43 3333333333333332 23455555555555555553 3333444444444444444443
No 377
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.06 E-value=4.8 Score=33.26 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHhcCcCCh---hHHHHHHHHHHHcCChHH
Q 045355 436 LADEARCMDLADR---YVNSECVKRMLQADQVSL 466 (900)
Q Consensus 436 ~~~~al~ldp~d~---~l~~~~a~~~l~~g~~ee 466 (900)
.|..++...|++. .+..++..|+-|+..+.+
T Consensus 35 ~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 35 LLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444466543 566666777655544443
No 378
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=1.2e+02 Score=35.31 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHH
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEAIEHTPTV------IDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVK 456 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~al~~~P~~------~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~ 456 (900)
+.+-|.-+++..+|..++++|...+...|++ ......++.+|..+.+.+.|.+++++|-+.||.++.-.....+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3466777788999999999999999888854 3466778889999999999999999999999999977666677
Q ss_pred HHHHcCChHHHHHHHH
Q 045355 457 RMLQADQVSLAEKTAA 472 (900)
Q Consensus 457 ~~l~~g~~eeA~~~~~ 472 (900)
.....|.-++|+..+.
T Consensus 437 ~~~~E~~Se~AL~~~~ 452 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQ 452 (872)
T ss_pred HHHHhcchHHHHHHHH
Confidence 7777888999987763
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.25 E-value=15 Score=38.70 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 111 IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
..++..++..+...|+++.++..+++++..+|-+...|..+-.+|...|+...|+..+..+.+.+..+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Confidence 45677888999999999999999999999999999999999999999999999998887777655443
No 380
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.95 E-value=8.9 Score=40.26 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
++..++..+...|+++.+.+.+++.+..+|.+-.+|..+-..|...|+...|+..|++.-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999988774
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.70 E-value=1.7e+02 Score=36.58 Aligned_cols=98 Identities=7% Similarity=-0.074 Sum_probs=75.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhc----c---CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045355 51 LTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSD----R---EYREAIKCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 51 ~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~eAi~~~~~al~~~p~~~~~~~~la~~ 120 (900)
.+...-..|+.|+..|++.-...|.. .++.+..|.....+ | .+++|+..|++. .-.|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 34555677899999999998888765 45667778766543 2 477788887764 3356666778889999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
|.++|+|++-+.++.-+++..|++|..-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999998886543
No 382
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.28 E-value=41 Score=36.89 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 191 MLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 191 ~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
+--.+..+|..+++.+-|+.+..+.+..+|....-+...|.++..+.+|.+|...+--+.
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999999999999999999999999999987665443
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.22 E-value=92 Score=33.10 Aligned_cols=140 Identities=11% Similarity=0.053 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhh
Q 045355 228 QEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLD 307 (900)
Q Consensus 228 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~ 307 (900)
.+...-.+..+..+-++.-..++++||+...+|..++.-- ...+.+|..+|+++++.......
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE----------a~Ti~~AE~l~k~ALka~e~~yr------- 251 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE----------ATTIVDAERLFKQALKAGETIYR------- 251 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHh-------
Confidence 3445556667778888888999999999999988886543 33456777777776543211000
Q ss_pred cccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHH
Q 045355 308 FLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLA 387 (900)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la 387 (900)
. .+... .+ ..........+.+...++--.||
T Consensus 252 --~----sqq~q------------------------------------h~-------~~~~da~~rRDtnvl~YIKRRLA 282 (556)
T KOG3807|consen 252 --Q----SQQCQ------------------------------------HQ-------SPQHEAQLRRDTNVLVYIKRRLA 282 (556)
T ss_pred --h----HHHHh------------------------------------hh-------ccchhhhhhcccchhhHHHHHHH
Confidence 0 00000 00 00000001112233344556789
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHH
Q 045355 388 QHYDRRGQYDVALSKIDEAIEHTPT--VIDLYSVKSRILKHAGDLAAA 433 (900)
Q Consensus 388 ~~y~~~g~~~~Al~~~~~al~~~P~--~~~~~~~la~i~~~~G~~~eA 433 (900)
.+-.++|+..+|++.++...+..|- ...++-++-..+....-|.+.
T Consensus 283 MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888882 223444444444444434333
No 384
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.03 E-value=3.5 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
.++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566666666677777777777666654
No 385
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=78.56 E-value=3.4 Score=28.87 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 415 DLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
++|..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777778877888888888888877765
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.67 E-value=6.5 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~a 406 (900)
+...|.-+...|++.+|+.+|+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555566666665555543
No 387
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.74 E-value=6 Score=32.55 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAI 407 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al 407 (900)
...|.-....|+|++|+.+|..+|
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444555555555555555444
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.43 E-value=1e+02 Score=32.07 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 381 WTLFFLAQHYDRRGQYDVALSKIDEAIEHTP------TVIDLYSVKSRILKHAGDLAAAATLADEA 440 (900)
Q Consensus 381 ~a~~~la~~y~~~g~~~~Al~~~~~al~~~P------~~~~~~~~la~i~~~~G~~~eA~~~~~~a 440 (900)
.+...+|.-|+..|++++|+.+|+.+..... -..++...+..|+.+.|+.+..+.+.-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3556788888888888888888888855432 23345666777777777777766654443
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.54 E-value=1.9e+02 Score=34.81 Aligned_cols=127 Identities=7% Similarity=0.005 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD--RKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
+...|..+...+..|++..+.....++ ..+|-.+.. ..-.+....+ .++ -+...+...|+.+.........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~yl--~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYPYL--EYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHhHH--HHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence 456788888888888888876655543 334432221 1111222222 233 3444455667666554444333
Q ss_pred HH---hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 87 YR---SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 87 ~~---~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
.. ..+++..-+..+ ...|.+.......+......|+-++|.....++.......+.
T Consensus 106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~ 164 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPN 164 (644)
T ss_pred HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCh
Confidence 32 345555555422 224677777777777788888877777776666554433333
No 390
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=75.45 E-value=1.2e+02 Score=32.51 Aligned_cols=166 Identities=14% Similarity=0.016 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCcHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK----NDIKSHVCW 80 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~p~~~~~~ 80 (900)
+++-...........+.++++.+.++.+++.+..+|--.+..++.+.++.++| ++.+...+...+. .-|.-.
T Consensus 95 L~~p~ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~--- 170 (301)
T TIGR03362 95 LAPPPADRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL--- 170 (301)
T ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh---
Confidence 33444566666677778899999999999999999999999999999999999 4666665555443 223211
Q ss_pred HHHHHHHHhccCH---HHHHHHHHHHHh-----------hCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 81 HVYGLLYRSDREY---REAIKCYRNALR-----------IDP--DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 81 ~~lg~~~~~~g~~---~eAi~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
.+.+..|-. ++-..++..... ..+ .+......-+..+...+.++.|+..++..+...++.
T Consensus 171 ----~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~ 246 (301)
T TIGR03362 171 ----ELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP 246 (301)
T ss_pred ----hcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh
Confidence 111112210 112222211100 011 112233445677788899999999999866544444
Q ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 145 RM---NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 145 ~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
.. ..+.++.++...|.++-|...+..+.+.+...
T Consensus 247 R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~ 283 (301)
T TIGR03362 247 RERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQL 283 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 33 34567888999999999998888877766543
No 391
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.81 E-value=8 Score=31.69 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 396 YDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
.++|+.++.+|+..+ ..|++++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 455666666665554 567777777777777665
No 392
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.78 E-value=1e+02 Score=31.75 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhh-----cCCH---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 045355 206 ERALAEMHKKESK-----IVDK---LAYKEQEVSLL-VKIGRLEEAAELYRALLS 251 (900)
Q Consensus 206 ~~Al~~l~~al~~-----~p~~---~~~~~~la~~~-~~~g~~~eA~~~~~~al~ 251 (900)
+.|...|++++.. .|.+ .....+.+..| .-+|+.++|+.+.++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5666667666543 2333 33344444444 447888888887777764
No 393
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.39 E-value=5.4 Score=32.10 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=8.0
Q ss_pred HcCCHHHHHHHHHHHHh
Q 045355 426 HAGDLAAAATLADEARC 442 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~ 442 (900)
..|++++|+.+|.++++
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 394
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.28 E-value=10 Score=40.05 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 62 AYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 62 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
|..+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++-.....+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666665443334455555554444
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.99 E-value=12 Score=38.81 Aligned_cols=59 Identities=19% Similarity=0.070 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEA 440 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~a 440 (900)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.+|...|+--.|...|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45566788889999999999999999999999999999999999999988888888765
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.20 E-value=21 Score=29.44 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH---HHHhccCHHHHHHH
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL---LYRSDREYREAIKC 99 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~---~~~~~g~~~eAi~~ 99 (900)
.|.-++...+.++|+..++++++..++....|..+|. +|...|+|.+.+++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666655555555544443 34455555555544
No 397
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.98 E-value=27 Score=36.05 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 045355 191 MLLYKISLLEECGSFERALAEMHKKESKIVD 221 (900)
Q Consensus 191 ~~~~la~~~~~~g~~~~Al~~l~~al~~~p~ 221 (900)
-+.+++.+..+.|+|++.+.++.+++...++
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 3556777777777777777777777766554
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=71.99 E-value=1.7e+02 Score=32.61 Aligned_cols=169 Identities=14% Similarity=-0.009 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCcHHHHHHH-HHHHHhccCHHHHHHHHHHHHhhCCCcH---HHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKN-DIKSHVCWHVY-GLLYRSDREYREAIKCYRNALRIDPDNI---EILRD 116 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~l-g~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~~~ 116 (900)
+.+.-...|..-+-.|+..++.+.+...-.. -|.....+..| .-......+...|+..|..+--.-|... -+++.
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3444455566666677777777666544321 11222222222 2234455677777777777766667632 34555
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHH
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLTLKPNHRMN---WIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLL 193 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (900)
-..+..+.|+.+.+..+-.+.+.....++.+ +-.++......++-..- ..+..++..-.+ .....+|+
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~----~~l~~~ls~~d~-----~~q~~lYL 261 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD----ARLVEILSFMDP-----ERQRELYL 261 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH----HHHHHHHHhcCc-----hhHHHHHH
Confidence 5556667777777777777766665554432 33333333333311111 112222222111 33446777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhc
Q 045355 194 YKISLLEECGSFERALAEMHKKESKI 219 (900)
Q Consensus 194 ~la~~~~~~g~~~~Al~~l~~al~~~ 219 (900)
.+++.-.-.|+.+-|.-.-++++.+.
T Consensus 262 ~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 262 RIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 77777777777777777777776653
No 399
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.99 E-value=7.3 Score=32.01 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=19.3
Q ss_pred HcCCHHHHHHHHHHHHhc-------CcCC--h-hHHHHHHHHHHHc
Q 045355 426 HAGDLAAAATLADEARCM-------DLAD--R-YVNSECVKRMLQA 461 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l-------dp~d--~-~l~~~~a~~~l~~ 461 (900)
..|++++|..+|..+++. .++. + .+..++..|+.|+
T Consensus 18 ~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 18 QRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 556666666666655543 2222 2 5566666666443
No 400
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=1.5e+02 Score=31.93 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCc--------HHHHHHHHHHHHhccCHHHHHHHHHHHHh---hC--CCcH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKN--DIKS--------HVCWHVYGLLYRSDREYREAIKCYRNALR---ID--PDNI 111 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~eAi~~~~~al~---~~--p~~~ 111 (900)
...+.......+.++++..+...+.. .|.+ ......+|.+|...|++.+-.......-. .- +.-.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555666778888888888763 2222 12457788888888888765554443221 11 1112
Q ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 112 EILRDLSLLQAQM-RDLTGFVETRQQLLTLKPNHR------MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 112 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
.+.+.+....... +..+.-+..+..+++...... ..-..++..|...++|.+|+..+..+.+-++.-. .
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD----D 163 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD----D 163 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----c
Confidence 2233333332222 122233333333333211110 1122445556666666666655554444333211 0
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
.....++++.-..+|....+..+|...+..+
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsA 194 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSA 194 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHH
Confidence 1233344445555555555555555555443
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.87 E-value=8.5 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 045355 394 GQYDVALSKIDEAIEHTPTVIDLYSVKSRI 423 (900)
Q Consensus 394 g~~~~Al~~~~~al~~~P~~~~~~~~la~i 423 (900)
|+.+.|...|++++...|.++.+|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777777777777777777777766554
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.85 E-value=9 Score=35.85 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR 58 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 58 (900)
..++..+...+..|+|.-|..+++.++..+|++.++...++.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456777777778888888888888888888888777777777665543
No 403
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.99 E-value=14 Score=30.33 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=25.8
Q ss_pred HcCCHHHHHHHHHHHHhc-------CcCCh---hHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 426 HAGDLAAAATLADEARCM-------DLADR---YVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l-------dp~d~---~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
..|++++|..+|..+++. .++.. .+..++..|+ +.|+++...+..
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl------~RAE~i~~~~l~ 72 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYL------KRAEEILRLHLS 72 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH------HHHHHHHHHhcc
Confidence 346666666666666543 33322 6667777776 456666655543
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.14 E-value=1.3e+02 Score=30.41 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHH
Q 045355 388 QHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLA 467 (900)
Q Consensus 388 ~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA 467 (900)
.-+.+.+...+|+...+.-++..|++......+-.+|.-.|+|++|...++-+-.++|++..--. +++.+++ .+.+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~-lyr~lir---~ea~ 84 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGAS-LYRHLIR---CEAA 84 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHH-HHHHHHH---HHHH
Confidence 34557889999999999999999999999999999999999999999999999999999852111 1111221 1222
Q ss_pred HHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 045355 468 EKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLA 515 (900)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~ 515 (900)
... .|.. +-...-+-..+..|...-++..-++.+.-++|...+.+
T Consensus 85 R~e--vfag-~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alre 129 (273)
T COG4455 85 RNE--VFAG-GAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALRE 129 (273)
T ss_pred HHH--Hhcc-CCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHH
Confidence 211 1211 11111122245678887777777888777776666544
No 405
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.29 E-value=9.2 Score=27.70 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAIE 408 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al~ 408 (900)
+.||..|..+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 406
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=68.44 E-value=2.8e+02 Score=33.65 Aligned_cols=232 Identities=10% Similarity=-0.036 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---hcCHHHHHHH
Q 045355 57 DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ---MRDLTGFVET 133 (900)
Q Consensus 57 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~ 133 (900)
|.-++-+..++.-+.+++.+..++..|-.+++..|++++-...-.++.++.|.++.+|.....-... .++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3445556667777778888899999999999999999998888888888999999888776654333 3677778888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 134 RQQLLTLKPNHRMNWIGFAVSHHLN-------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 134 ~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
|++++.. -+.+..|...+...... ++++....++....+.+..... ......+++...-..|...-..+
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t---~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT---EGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc---ccHHHHHHHHHHHHHHHHhHHHH
Confidence 8888763 34555666555554433 4555555444433333222111 11233355555566666655566
Q ss_pred HHHHHHHHHhhhcCCHHHH----HHHHH--H-HHHHcCCHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHhccccc
Q 045355 207 RALAEMHKKESKIVDKLAY----KEQEV--S-LLVKIGRLEEAAEL-------YRALLSMNPDNYSYYEGLQKCLGLYRD 272 (900)
Q Consensus 207 ~Al~~l~~al~~~p~~~~~----~~~la--~-~~~~~g~~~eA~~~-------~~~al~~~p~~~~~~~~l~~~~~l~~~ 272 (900)
+-+..+...+... .+..+ |.... . ......+++.|..- +++.+...|.-...|..+....
T Consensus 249 qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe----- 322 (881)
T KOG0128|consen 249 QVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFE----- 322 (881)
T ss_pred HHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----
Confidence 7777777666543 21111 11111 1 11222334444433 3444444444444444444443
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhcCcchhh
Q 045355 273 NGNYSSGEIDELDALYKSLAQQYTWSSAV 301 (900)
Q Consensus 273 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 301 (900)
...|+.......++++....+.+...
T Consensus 323 ---~~~G~p~ri~l~~eR~~~E~~~~~~~ 348 (881)
T KOG0128|consen 323 ---KKSGDPVRIQLIEERAVAEMVLDRAL 348 (881)
T ss_pred ---HhcCCchHHHHHHHHHHHhccccHHH
Confidence 45677778888888888777765433
No 407
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=68.26 E-value=45 Score=37.01 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH----HHHhcCHHHHH-H
Q 045355 58 RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL----QAQMRDLTGFV-E 132 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~----~~~~g~~~~A~-~ 132 (900)
..-+|+-+++.++..+|.+..+...+..+|...|-...|...|... +-.+.+ +-.+|.+ ....|.+..+. .
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L---~iK~IQ-~DTL~h~~~~r~~~~~~~~~~~~~ 273 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL---DIKNIQ-LDTLGHLILDRLSTLGPFKSAPEN 273 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc---ChHHHH-HHHhHHHHHHHHhccCcccccchH
Confidence 3567888888888889999888888888999999999998888643 111111 1111111 12233333333 4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 133 TRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
.+..++.....+..-.-.....-+..|.|.+..+.++
T Consensus 274 ~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 274 LLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4444444332222222223344566788887776654
No 408
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.39 E-value=81 Score=31.71 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=27.7
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
+.+...+|+...+.-++..|.+......+-.+++-.|+|++|...++-+-++.|++
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34444555555555555555554444444455555555555555555444444443
No 409
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=67.32 E-value=16 Score=38.61 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 96 AIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
|+.+|.+|+.+.|++...+..+|.+....|+.-.|+-.|-+++......+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999987765567777888777766
No 410
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=1.7e+02 Score=30.61 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc--cCHHH
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNC--------MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD--REYRE 95 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~e 95 (900)
..|++.=...+..+|..-.+|...-.+... ..-.+.-+.++..+++.+|++...|+..-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356777777777888877777776666655 12245667888999999999999999888877665 66888
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHH------HHhcCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCH
Q 045355 96 AIKCYRNALRIDPDNIEILRDLSLLQ------AQMRDLTGFVETRQQLLTLKPNHRMNWIGF---AVSHHLNSNG 161 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~ 161 (900)
-+..-++.++.++.|...|...-.+. ....++..-.++-..++..++.+..+|... .......|++
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 88888999999999888765544333 333445555667777888999999999877 3333444543
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.72 E-value=79 Score=36.49 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
..+.|+++.|.++..++ ++..-|..||.+....+++..|.+||.++-.. -.|-.++...|+-+.-..
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHH
Confidence 44566666666655432 44556777777777777777777777776432 223333334444333222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 133 TRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
.-..+-+....+. --.++...|++++++++|..
T Consensus 714 la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 2222222111111 12356777888888865543
No 412
>PF13041 PPR_2: PPR repeat family
Probab=66.69 E-value=26 Score=25.84 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 223 LAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 223 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
...|..+-..+.+.|++++|.++|+++.+.+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3455666677777777777777777777664
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.00 E-value=13 Score=24.02 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 045355 27 KGLKAADAILKKFPEHGET 45 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~ 45 (900)
.+..+|++++...|.++..
T Consensus 5 ~~r~i~e~~l~~~~~~~~~ 23 (33)
T smart00386 5 RARKIYERALEKFPKSVEL 23 (33)
T ss_pred HHHHHHHHHHHHCCCChHH
Confidence 3333333333333333333
No 414
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=65.44 E-value=14 Score=30.25 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=8.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q 045355 426 HAGDLAAAATLADEARC 442 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~ 442 (900)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45555555555555543
No 415
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.27 E-value=13 Score=30.65 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=17.7
Q ss_pred HcCCHHHHHHHHHHHH-------hcCcCCh---hHHHHHHHHHHHc
Q 045355 426 HAGDLAAAATLADEAR-------CMDLADR---YVNSECVKRMLQA 461 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al-------~ldp~d~---~l~~~~a~~~l~~ 461 (900)
..|++++|+.+|.+++ ...|+.. .++.++..|+.|+
T Consensus 20 ~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 20 EAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444 3344332 5566666665443
No 416
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.00 E-value=1.3e+02 Score=36.25 Aligned_cols=175 Identities=14% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhcC
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIK-SHVCWHVYGLLYRSDREYREAIKCYRNALRI-DPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~la~~~~~~g~ 126 (900)
.-.++.....|+-|+.+.+.- ..+++ -..++..+|..++..|++++|...|-+.+.. +|... +. -+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-i~-----kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-IK-----KFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-HH-----HhcCHHH
Confidence 344566666777777776542 22333 2456788999999999999999999998864 33211 11 1122223
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
..+-..+++.+.+..-.+..--..+-.+|.++++.+.-.+ |.+....+ .+ .-..+ ..-.++.+.+-++
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e----fI~~~~~g---~~--~fd~e---~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE----FISKCDKG---EW--FFDVE---TALEILRKSNYLD 480 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH----HHhcCCCc---ce--eeeHH---HHHHHHHHhChHH
Confidence 3333445555555544455556677788999998877653 33222211 00 00011 1123334444444
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 207 RALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 207 ~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
+|.-.-.+.-. . .. .+-.++...|+|++|+.++..+
T Consensus 481 ~a~~LA~k~~~-h---e~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-H---EW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-C---HH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 44433332211 1 11 2334567789999999987643
No 417
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=64.15 E-value=1.8e+02 Score=30.06 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-cC--CHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESK-IV--DKLAYKEQEVSLLVK-IGRLEEAAELYRA 248 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~-~p--~~~~~~~~la~~~~~-~g~~~eA~~~~~~ 248 (900)
+.+++.+..+.|+|++.+.+..++.+. .| -+..-...+..+|-. .|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 445666666667777777777666554 22 223333334333322 3444444444443
No 418
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.00 E-value=3.3e+02 Score=32.88 Aligned_cols=55 Identities=5% Similarity=-0.144 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 384 FFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEA 440 (900)
Q Consensus 384 ~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~a 440 (900)
...+..+...|....|...+..++.. .++.-...++.+....|.++.|+....++
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 45566677788888888888877765 23556677777778888888777766543
No 419
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.71 E-value=12 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHh
Q 045355 494 LASGESYFRQGDLGRALKKFLAVEKHY 520 (900)
Q Consensus 494 ~~lg~~y~r~g~~~~Alk~~~~v~~~~ 520 (900)
+.++.+|..+|+++.|.+.+++|....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 478999999999999999999998653
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.13 E-value=24 Score=41.27 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=100.0
Q ss_pred CChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHH---HHhCCHHHHHHHHHHH
Q 045355 330 VPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHY---DRRGQYDVALSKIDEA 406 (900)
Q Consensus 330 ~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y---~~~g~~~~Al~~~~~a 406 (900)
.|.+..++..-|.+..+++...++++.....-.. . . ..+.+. +.+..|-++ .+-||-++|+...-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t---~-~--vve~~n----v~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDT---L-K--VVETHN----VRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcch---h-h--hhccCc----eEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 4466677777788888888888887776432110 0 0 001111 011111122 3478999999999888
Q ss_pred HHcC-CCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCcCCh-hHHHHHHHHHHHcC-ChHHHHHH--HH
Q 045355 407 IEHT-PTVIDLYSVKSRILKHA---------GDLAAAATLADEARCMDLADR-YVNSECVKRMLQAD-QVSLAEKT--AA 472 (900)
Q Consensus 407 l~~~-P~~~~~~~~la~i~~~~---------G~~~eA~~~~~~al~ldp~d~-~l~~~~a~~~l~~g-~~eeA~~~--~~ 472 (900)
++.. |-.++.|..-|+||+.+ +..+.|++||++|.+..|... -|| ++.++..+| .++...++ +.
T Consensus 270 ve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN--~atLL~aaG~~Fens~Elq~Ig 347 (1226)
T KOG4279|consen 270 VEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGIN--LATLLRAAGEHFENSLELQQIG 347 (1226)
T ss_pred HHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcccc--HHHHHHHhhhhccchHHHHHHH
Confidence 8764 56788999999999753 567889999999999999875 343 233444444 34444433 22
Q ss_pred Hhccc-CCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045355 473 LFTKD-GDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAV 516 (900)
Q Consensus 473 ~~~~~-~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v 516 (900)
+-... -.....+--+|..|---..-.+-.-.++|.+|+..-+.+
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHH
Confidence 11111 112234555677774211111222245666666555444
No 421
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.35 E-value=1.3e+02 Score=27.76 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=70.2
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCY 100 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~ 100 (900)
..+.....+.+++.++..++.++..+..+..+|... +..+.++.++. .++... ....+.+..+.+-+++++-.|
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHHHHH
Confidence 357899999999999998888888888888887654 34556666653 111111 122344445556666666666
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045355 101 RNALRIDPDNIEILRDLSLLQAQM-RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHH 156 (900)
Q Consensus 101 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (900)
.+. ..... ...++... ++++.|++++.+ +.+++.|..++..+.
T Consensus 93 ~k~----~~~~~----Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 93 KKD----GNFKD----AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred Hhh----cCHHH----HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 542 11111 11222223 778888877765 346777777765544
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.30 E-value=80 Score=33.14 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 191 MLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 191 ~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
.+...+..|...|.+.+|+...++++..+|-+...+..+-.++..+|+--.|+..|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444557778888999999999999999999888888888899999998888887777654
No 423
>PF13041 PPR_2: PPR repeat family
Probab=60.76 E-value=35 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=9.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
..+-..+.+.|++++|.+.|++..
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 333333333344444444443333
No 424
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=16 Score=39.12 Aligned_cols=122 Identities=12% Similarity=0.038 Sum_probs=61.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 94 (900)
.+...+..++|..|..-+.+.+..-...+ ..+-.+... +.......-......++.+-+..+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccc------------ccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 34457788899999888888776211000 000000000 000011111122233455555555555
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGF 151 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 151 (900)
.|+..-..+++.+++...+++..+..+....++++|++.+..+....|++......+
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 555555555555555555566666666666666666666666665556555443333
No 425
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.22 E-value=21 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=7.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q 045355 426 HAGDLAAAATLADEARC 442 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~ 442 (900)
..|++++|+.+|..+++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 33555555544444443
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.81 E-value=31 Score=33.54 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcc--------hhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 045355 650 EDPLSEATKYLKLLQKNSPDSLE--------THLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRF 714 (900)
Q Consensus 650 ~~~l~~A~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~~~~~~~~~~~ 714 (900)
-.|||-|+-++..+.+-.+..-. .-..+.=|.+++|++.+|...|++..+ ||+++..-..|..+
T Consensus 82 ~TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 82 LTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred cChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 37999999999999998876311 233455689999999999999999999 88888774444433
No 427
>PF12854 PPR_1: PPR repeat
Probab=58.58 E-value=21 Score=24.02 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDE 405 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~ 405 (900)
+|..+-..|.+.|+.++|.+++++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566677777778888888777764
No 428
>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
Probab=57.37 E-value=49 Score=32.61 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=62.8
Q ss_pred HHHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHH
Q 045355 489 CMWYE-----LASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAA 563 (900)
Q Consensus 489 ~~w~~-----~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~ 563 (900)
.+|+. ...+.-+.+.|+.+-|+|++..|..+|. |...|--.++.||+..|.++ -+.+....-|.-..
T Consensus 39 ElW~klilhEl~aA~~llr~~~~~pa~kmL~Rv~ri~e-----ql~~aw~Vl~TMTp~dyl~f---R~~lgqsSGFQS~q 110 (262)
T COG3483 39 ELWMKLILHELRAARDLLRADDLPPALKMLARVSRIFE-----QLNQAWDVLATMTPADYLDF---RDALGQSSGFQSYQ 110 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHH---HHHhcccccchHHH
Confidence 46763 5667778899999999999999999984 55556667999999998654 66777777788888
Q ss_pred HHHHHHHHHHhcC
Q 045355 564 AGAIRCYIKLFDS 576 (900)
Q Consensus 564 ~~~~~~y~~l~d~ 576 (900)
-..|++.+-..+.
T Consensus 111 yR~iEfllGnkn~ 123 (262)
T COG3483 111 YREIEFLLGNKNA 123 (262)
T ss_pred HHHHHHHHcCcch
Confidence 8889888766655
No 429
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.22 E-value=1.5e+02 Score=31.40 Aligned_cols=136 Identities=11% Similarity=0.014 Sum_probs=75.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HhCCCH----HHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPE--HGETLSMKGLTL---NCMDRK----SEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~--~~~~~~~lg~~~---~~~g~~----~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
.+..+...++|++=-..+++..+...+ .++..+..+... +.+... ..-...++.-+...|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567788899999988888887763322 222222222222 222211 23567777778889999999988888
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
.+....=--.....- +.-....|... ..-.+.|...+.+++.++|....+...+..+-...|...
T Consensus 86 ~~~~~Aw~~RG~~~A------~~V~~~~W~~~------~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYA------STVTEAQWLGA------HQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHccchh------cccCHHHHHHH------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 765431100000000 00011112111 112456777777777777777777777766666666654
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.21 E-value=2.1e+02 Score=32.00 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM--NWIGF--AVSHHLNSNGSKAVEILEAYE 172 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~l~~~~ 172 (900)
...+.-.+..++|..|...+..+...-|.... .+..+ |..+...-++.+|.+.++.+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455566777777777777777764233222 22333 333445567777775555443
No 431
>PF12854 PPR_1: PPR repeat
Probab=55.94 E-value=27 Score=23.54 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 413 VIDLYSVKSRILKHAGDLAAAATLADE 439 (900)
Q Consensus 413 ~~~~~~~la~i~~~~G~~~eA~~~~~~ 439 (900)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345667777777777777777777765
No 432
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.34 E-value=1.7e+02 Score=31.29 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNA 103 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~a 103 (900)
.+|...|..|.+.|+-+.|.+++++.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444455555555555554444443
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.23 E-value=1.7e+02 Score=26.79 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHhhhhcCCC-----hhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHH
Q 045355 312 EKFREAAFNYVRPLLTKGVP-----SLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFL 386 (900)
Q Consensus 312 ~~~~~a~~~~~~~~l~~~~p-----~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~l 386 (900)
.+-....+.-+.......+| ....-+..-|...+....+..+++.....+...+.+.. ...++.+|...
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~n------D~RylkiWi~y 75 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKN------DERYLKIWIKY 75 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcC------CHHHHHHHHHH
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 387 AQHYDRRGQYDVALSKIDEAIEHTP--TVIDLYSVKSRILKHAGDLAAAATLADEAR 441 (900)
Q Consensus 387 a~~y~~~g~~~~Al~~~~~al~~~P--~~~~~~~~la~i~~~~G~~~eA~~~~~~al 441 (900)
|.... .+.++|.......- ..+..|...|.++...|++++|.++|+.++
T Consensus 76 a~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 76 ADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 434
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=55.20 E-value=2.9e+02 Score=29.52 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK--P--NHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
.-++.+++-....|+....++..|..++..|+|.+|-.++-....+- | ++..+..+.-..-....+|+.|++-|..
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555555556678889999999999999999999988766554432 2 2334444444455667899999988888
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHH--HH-cCCHHHHHHHHH------HHhhhcCCHHHHHHHHHHHHHHc-CCHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLL--EE-CGSFERALAEMH------KKESKIVDKLAYKEQEVSLLVKI-GRLE 240 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~--~~-~g~~~~Al~~l~------~al~~~p~~~~~~~~la~~~~~~-g~~~ 240 (900)
+...+...+-......-...+|+.-=.++ .. -+--+.-++.|- .+++ ...+..+..++.+..-. .+..
T Consensus 193 Lre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQ--t~cPhllRYLatAvvtnk~~rr 270 (432)
T KOG2758|consen 193 LREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQ--TSCPHLLRYLATAVVTNKRRRR 270 (432)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHH--hhCHHHHHHHHHHhhcchHhhH
Confidence 88877655432210001111222111111 11 111111222111 1111 11234444455544433 5566
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 241 EAAELYRALLSMNPDN-YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 241 eA~~~~~~al~~~p~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
.+++-+-++++...-. .+.......|+ +..=|++.|...+++..+.-.++.
T Consensus 271 ~~lkdlvkVIqqE~ysYkDPiteFl~cl--------yvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 271 NRLKDLVKVIQQESYSYKDPITEFLECL--------YVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHHHHHHHhccccCCcHHHHHHHH--------hhccchHHHHHHHHHHHHHHhcch
Confidence 6777777777653211 12223333444 334568888888877766544443
No 435
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.15 E-value=20 Score=29.75 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 394 GQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 394 g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
+.|+.|.+++++||..+ ..|+.++|+.+|++++..
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 34677777777777665 557888888888777654
No 436
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.71 E-value=9.8 Score=40.71 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHH
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKR 457 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~ 457 (900)
+..++.+-...+.+..|+.....++..++....+++.++..+....++++|.+.++.+....|++..+.......
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 445777788899999999999999999999999999999999999999999999999999999998776555433
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.31 E-value=79 Score=32.86 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLL 138 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al 138 (900)
..+|..|+..|+|+.|+..++.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444444444444443
No 438
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.17 E-value=1.6e+02 Score=33.94 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=39.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCChhHHHHHHHHHHHcCChHHH
Q 045355 393 RGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM-----DLADRYVNSECVKRMLQADQVSLA 467 (900)
Q Consensus 393 ~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-----dp~d~~l~~~~a~~~l~~g~~eeA 467 (900)
+..|.-|+-.+-..-+..|+. .-..+++.|.+|+.. +-.+.|-....+-++.|.+++.+|
T Consensus 273 l~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA 337 (618)
T PF05053_consen 273 LARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREA 337 (618)
T ss_dssp TTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHH
T ss_pred hhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHH
Confidence 456777777777777776642 233445666666543 223347777788888899999998
Q ss_pred HHHHHHh
Q 045355 468 EKTAALF 474 (900)
Q Consensus 468 ~~~~~~~ 474 (900)
+..+...
T Consensus 338 ~~~Wa~a 344 (618)
T PF05053_consen 338 LRSWAEA 344 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766433
No 439
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.81 E-value=2.4e+02 Score=31.32 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=40.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCC-----HHHHH--HHHHHHHhCCCHHHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEH-----GETLS--MKGLTLNCMDRKSEAYELVRL 68 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-----~~~~~--~lg~~~~~~g~~~eA~~~~~~ 68 (900)
...+..+++.++|..|...|++++...+.. ...+. ..|..+...-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 346668899999999999999999875421 12233 334455667889999999986
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.24 E-value=37 Score=33.69 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChh
Q 045355 396 YDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRY 449 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~ 449 (900)
.+..++..++.+...| ++..+..++.++...|+.++|...+.++..+-|.+.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 4455566677777777 6788899999999999999999999999999995543
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.05 E-value=26 Score=38.96 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh-------h-cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 192 LLYKISLLEECGSFERALAEMHKKES-------K-IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~-------~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
...+.+++.-.|+|..|++.++.+-- . .+-....++..|-+|+-+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999876421 1 223567889999999999999999999998874
No 442
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=50.24 E-value=4.2e+02 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
...+|..++.+|+|+-|...|+.+.+
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~ 236 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKK 236 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45678888888888888888887765
No 443
>PRK12798 chemotaxis protein; Reviewed
Probab=49.40 E-value=4.2e+02 Score=29.64 Aligned_cols=201 Identities=14% Similarity=0.054 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH---HHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILK--KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV---CWHVY 83 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~l 83 (900)
...-+..|...|-.|+-.++.+.+..+-- ..+.-+..+....-......+...|+.+|+.+--..|.... ++..-
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs 191 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS 191 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence 34456667777888999999888876533 12222233334444556677899999999999888887632 34444
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHc
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEI---LRDLSLLQAQMRDLTGFVETRQQLLTL-KPN-HRMNWIGFAVSHHLN 158 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~-~p~-~~~~~~~la~~~~~~ 158 (900)
-.+....|+.+++..+-.+-++....++.+ +...+......++-..- +.+..++.. +|. ....|..++..-...
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~ 270 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALID 270 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHc
Confidence 445578899999888888877776665443 44444555554433322 335555543 444 346788888888999
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKE 216 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al 216 (900)
|+.+-|.-........... .. .....+.++.+....-..++++++..+..+-
T Consensus 271 Gk~~lA~~As~~A~~L~~~----~~--~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 271 GKTELARFASERALKLADP----DS--ADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred CcHHHHHHHHHHHHHhccC----CC--cchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9999988444443333211 11 3445667777777777777888887776643
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.86 E-value=3.8e+02 Score=28.97 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--------------------------CHHHHHHHHHHHHHhC-CCCH
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMR--------------------------DLTGFVETRQQLLTLK-PNHR 145 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~-p~~~ 145 (900)
-+||+..-+-...+-|..++++-.++.+.++.. -.+++...+.+++... |+-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 467888777778888888888777776665532 1344555555555433 3333
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--
Q 045355 146 MNWIGFAVSHHLN-----SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK-- 218 (900)
Q Consensus 146 ~~~~~la~~~~~~-----g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~-- 218 (900)
...-.++.++... -+|..-..+++.+. ...|++ -+-++.+.......-...++...+.....
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSP--------vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~ 360 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSP--------VVTLNRAVALAMREGPAAGLAMVEALLARPR 360 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCC--------eEeehHHHHHHHhhhHHhHHHHHHHhhcccc
Confidence 3323333333222 23433332222222 222221 23345555555555567777777766554
Q ss_pred cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 219 IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 219 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
-.+...++-..|.++.++|+.++|...|++++.+.++..+..+...
T Consensus 361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3344556778999999999999999999999999888776554443
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.69 E-value=3.6e+02 Score=29.91 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh-hHHH--HHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHH
Q 045355 415 DLYSVKSRILKHAGDLAAAATLADEARCMDLADR-YVNS--ECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMW 491 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~-~l~~--~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w 491 (900)
.++..+|.-|...|+++.|+++|-+++..-.+-. .+|. ......+-.|++-.-....+...+.++. ...+..-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~----~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA----NENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh----hhhHHHh
Confidence 4677889999999999999999999988866654 2222 2223334456766665555444432211 0000000
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHH
Q 045355 492 ----YELASGESYFRQGDLGRALKKFLA 515 (900)
Q Consensus 492 ----~~~~lg~~y~r~g~~~~Alk~~~~ 515 (900)
..-..|.+.+.+++|..|.++|-.
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLL 254 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123567888888888888888843
No 446
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.41 E-value=43 Score=31.33 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDL 430 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~ 430 (900)
.....|+.....|++.-|.++.+.++..+|++.++...++.+|..+|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3456777788899999999999999999999999999999998887743
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.19 E-value=2.8e+02 Score=30.71 Aligned_cols=94 Identities=19% Similarity=0.080 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCC----hhH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTP---TVIDLYSVKSRILKHAGDLAAAATLADEARCMD----LAD----RYV 450 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P---~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ld----p~d----~~l 450 (900)
++-.+|.+|...|+++.|++.|-++-.... ..+..+++.-++-..+|+|..-..+-.+|.+.- ... ..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 678899999999999999999999766543 345678888888888999988888888877651 111 145
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhc
Q 045355 451 NSECVKRMLQADQVSLAEKTAALFT 475 (900)
Q Consensus 451 ~~~~a~~~l~~g~~eeA~~~~~~~~ 475 (900)
...++...+..+.++.|.+.+-...
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566666667778888876654443
No 448
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.97 E-value=3.6e+02 Score=28.43 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC----------CchHHHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCcCCh
Q 045355 383 LFFLAQHYDRRGQYDVALSKIDEAIEHTP----------TVIDLYS---VK-SRILKHAGDLAAAATLADEARCMDLADR 448 (900)
Q Consensus 383 ~~~la~~y~~~g~~~~Al~~~~~al~~~P----------~~~~~~~---~l-a~i~~~~G~~~eA~~~~~~al~ldp~d~ 448 (900)
+-.-|....-..|+..|++.++++++.-. ...+.-. .. ...+..+|++.++..+.-+-.+.-.+-|
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 34456667778999999999999987531 1112222 22 2467889999999999888776533334
Q ss_pred -hHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 045355 449 -YVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKF 513 (900)
Q Consensus 449 -~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~ 513 (900)
.+...|..+|-+.++.....+..+.+.++++... +.+ =+.-.+..+-.++.=+|.+.+|.+..
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~-lp~-y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQS-LPE-YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCC-chh-hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8888999999999999999999999988543222 111 01223456666777789999998876
No 449
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.26 E-value=1.9e+02 Score=33.60 Aligned_cols=112 Identities=13% Similarity=-0.050 Sum_probs=64.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCY 100 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~ 100 (900)
-.|+++.|...+-.+ | -+.....+..+..+|-.++|++ +.++... .-.+..+.|+++.|.+..
T Consensus 598 mrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d~----rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPDQ----RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChhh----hhhhhhhcCcHHHHHHHH
Confidence 345665555433332 2 2334445555666666555544 3333211 223445678888777654
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 101 RNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 101 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
.+ .++..-|..||.+....+++..|.+++.++-. |-.|-.++...|+.+
T Consensus 661 ~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 661 VE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAE 709 (794)
T ss_pred Hh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChh
Confidence 43 35566788888888888888888888887643 333444455556554
No 450
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.58 E-value=7.3e+02 Score=31.65 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHH
Q 045355 415 DLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYEL 494 (900)
Q Consensus 415 ~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~ 494 (900)
.+|...|.-+...+.+++|.-.|+.+-++ .++.+.+..+|++.+|..+......+.+.... ...
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~--------~a~ 1003 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEGKDELVI--------LAE 1003 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHH--------HHH
Confidence 34555566666666777776666665443 23445555667777776665544332221110 112
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 045355 495 ASGESYFRQGDLGRALKKFLAV 516 (900)
Q Consensus 495 ~lg~~y~r~g~~~~Alk~~~~v 516 (900)
.+..-+..+|++-+|-+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 5666666777777777666443
No 451
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.55 E-value=29 Score=22.04 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 226 KEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 226 ~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34455566666666666666666554
No 452
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=45.19 E-value=2.5e+02 Score=25.83 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLAD 438 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~ 438 (900)
+...+.....+.+++.++..++.++..+..+..+|... +..+.++.++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34567889999999999988888888888888888765 3444445544
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.95 E-value=3.1e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 224 AYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQK 265 (900)
Q Consensus 224 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 265 (900)
..+..+-......|+++.|-++|.-++...+-+......+|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~ 83 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGA 83 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHH
Confidence 344455556667788888888888888776666665555554
No 454
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.86 E-value=4.8e+02 Score=31.32 Aligned_cols=157 Identities=15% Similarity=0.039 Sum_probs=60.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH---HH--
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSH--VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL---LQ-- 121 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~---~~-- 121 (900)
.-.++.-.|+|+.|++++-+ .+.+. .++..++..+ .|-..-.-..-...+..++.++.. .+++. .|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~--~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~ 336 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAY--YGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR 336 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHH--TT-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHH--cCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH
Confidence 34567778999999999876 12221 2233333333 332222222114455555544322 22222 22
Q ss_pred -HHhcCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHHcCCHHHHH-----------HHHHHHHhhhccCCCCCcchhc
Q 045355 122 -AQMRDLTGFVETRQQLLTLK-PNHRM-NWIGFAVSHHLNSNGSKAV-----------EILEAYEGTLEDDYPPDNERCE 187 (900)
Q Consensus 122 -~~~g~~~~A~~~~~~al~~~-p~~~~-~~~~la~~~~~~g~~~~A~-----------~~l~~~~~~l~~~~~~~~~~~~ 187 (900)
+...|...|+++|--+-... |+... .+..+.......++++.-+ .+++...+.+..... ...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~----~~~ 412 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDD----EDF 412 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSS----SHH
T ss_pred HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCc----HHH
Confidence 33567777877776543322 22221 1223333333333332221 111221122211110 023
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045355 188 HGEMLLYKISLLEECGSFERALAEMHKKE 216 (900)
Q Consensus 188 ~~~~~~~la~~~~~~g~~~~Al~~l~~al 216 (900)
...+....|.-....|++++|+..|.-+-
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34555666777788888888888777554
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.78 E-value=1.8e+02 Score=34.65 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=109.0
Q ss_pred hchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHH------HHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CC
Q 045355 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAY------KEQEVSLLV---KIGRLEEAAELYRALLSMN-PD 255 (900)
Q Consensus 186 ~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~------~~~la~~~~---~~g~~~eA~~~~~~al~~~-p~ 255 (900)
.-+++...++-..|....+|+.-++..+.. +..|+...+ .+..+-++- +-|+-++|+...-.+++.. |-
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 456678888888899999998887777654 445543221 122233332 3477788888888888765 45
Q ss_pred CHHHHHHHHHHhc-ccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcc-cchHHHHHHHHhHHhhhhcCCChh
Q 045355 256 NYSYYEGLQKCLG-LYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFL-QGEKFREAAFNYVRPLLTKGVPSL 333 (900)
Q Consensus 256 ~~~~~~~l~~~~~-l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~-~~~~~~~a~~~~~~~~l~~~~p~~ 333 (900)
.++.|...|++|. +.-..++.+.+..+.|+.+|+++.+..|....-..++..+. .+..|+...+.-.-
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~I---------- 346 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQI---------- 346 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHH----------
Confidence 5666666666653 11122345567788999999999999886554433333332 34444433331111
Q ss_pred hhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 045355 334 FSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTV 413 (900)
Q Consensus 334 ~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~ 413 (900)
-..|.++....|..+.. ..|+.. +.|+-+.++ .++|.+|+..-+...++.|..
T Consensus 347 gmkLn~LlgrKG~lekl----q~YWdV---------------------~~y~~asVL--And~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKL----QEYWDV---------------------ATYFEASVL--ANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhhccchHHHH----HHHHhH---------------------HHhhhhhhh--ccCHHHHHHHHHHHhccCCce
Confidence 12233444344432221 122110 223333333 678899998888888888754
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=43.31 E-value=5.3e+02 Score=29.11 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHc-
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH------GETLSMKGLTLNCMDRK-------SEAYELVRLGVKN- 72 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~-------~eA~~~~~~al~~- 72 (900)
+-|..+=+.|.-++-.|+|+-|...|+.+.+.+-++ +.+..+.|.++...+.. ++...+++.++..
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 345566677788888999999999999988755433 33556667777766632 3444555554431
Q ss_pred ----------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCC-----cHHHHHHHHHHH--HHhcCHHHHHHH
Q 045355 73 ----------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI--DPD-----NIEILRDLSLLQ--AQMRDLTGFVET 133 (900)
Q Consensus 73 ----------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~--~p~-----~~~~~~~la~~~--~~~g~~~~A~~~ 133 (900)
......+....+.++...|.+.+|...+-++... ..+ ..-.+-.+|.++ ........-..-
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 1122345667788888899988888777666654 222 222334444444 111000000000
Q ss_pred HHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 134 RQQLLTLKPNHRMNWI-GFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 134 ~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
++ -...|. .-|.-+...|+...|..++......
T Consensus 366 ~R--------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 366 FR--------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred hH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00 011233 3366777889999999555444433
No 457
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.70 E-value=39 Score=21.43 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH
Q 045355 385 FLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 385 ~la~~y~~~g~~~~Al~~~~~a 406 (900)
.+-..|.+.|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3344444444444444444443
No 458
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.43 E-value=8.3 Score=45.12 Aligned_cols=179 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 112 EILRDLSLLQAQMRDLTGFVETRQQLL--TLKPNH-RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
..+..-+..+++.|++..|...+..+- .+.|.. .......+.+....|+++.|+..|.... ..... ....
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~-~~~l~------~~~~ 97 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQD-LWQLP------PEQQ 97 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCC-cccCC------HHHH
Confidence 344555667777777777777777665 223322 2334455667777788888875554310 01000 1233
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLG 268 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (900)
...+..++.++...|++-+|...+-..-...++......+.-.+...+...... .+.............|..|+.++.
T Consensus 98 ~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~~~~~~~~~l~GWl~La~i~~ 175 (536)
T PF04348_consen 98 ARYHQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQLRRASEPDLQGWLELALIYR 175 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHhhhcCCCHHHHHHHHHHHHHH
Confidence 455566777888888777777665544333222111111111111111111111 112222223333456777766652
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchh
Q 045355 269 LYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPL 306 (900)
Q Consensus 269 l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l 306 (900)
-...+.......+......+|.++....++.
T Consensus 176 -------~~~~~p~~l~~al~~Wq~~yP~HPA~~~lP~ 206 (536)
T PF04348_consen 176 -------QYQQDPAQLKQALNQWQQRYPNHPAAQYLPA 206 (536)
T ss_dssp --------------------------------------
T ss_pred -------hccCCHHHHHHHHHHHHHhCcCCcccccCCH
Confidence 1134566666777788888888887665543
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=4.4e+02 Score=27.82 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
.+|.++|..|.+.++.+.+.++..+.+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 344555555555555555544444433
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.83 E-value=8.8e+02 Score=30.93 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHH
Q 045355 77 HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD----------LTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 77 ~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~ 146 (900)
+.+.+.+|.+|...|...+|+.||.+|..-..+.. ++..+..-..-.|. -..|+.+|.+++++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl------ 992 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL------ 992 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHH
Q 045355 147 NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYK 226 (900)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~ 226 (900)
+...+-.+.+.++-....+.+..+. |..+......-.-....|.+-+|...+-+.-. .......+
T Consensus 993 --------le~hn~~E~vcQlA~~AIe~l~dd~------ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcL 1057 (1480)
T KOG4521|consen 993 --------LEEHNHAEEVCQLAVKAIENLPDDN------PSVALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCL 1057 (1480)
T ss_pred --------HHHhccHHHHHHHHHHHHHhCCCcc------hhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHH
Q ss_pred HHHHHHHHHcCCH------------HHHHH-HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 227 EQEVSLLVKIGRL------------EEAAE-LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 227 ~~la~~~~~~g~~------------~eA~~-~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
..+..+++..|.+ ++-.. +++.+-...|-...-++.+..++.+. .+++.+|-.+.-+...
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~-------RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA-------RHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh-------hcchhHHHHHHHHHHH
Q ss_pred hcCcchhhhhchh
Q 045355 294 QYTWSSAVKRIPL 306 (900)
Q Consensus 294 ~~p~~~~~~~l~l 306 (900)
............+
T Consensus 1131 rl~se~~~~~~~L 1143 (1480)
T KOG4521|consen 1131 RLESETCMTPELL 1143 (1480)
T ss_pred HhcccccCCHHHH
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.07 E-value=2.3e+02 Score=26.22 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSY-ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 7 ~~~~~l~~~a~~~~-~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
.....++..|.... .+|.-++--+.+..+.+....+|+.+..+|.+|...|+..+|-+++++|-+
T Consensus 83 n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 83 NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 462
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.59 E-value=62 Score=20.90 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 226 KEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 226 ~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
|..+-..|.+.|++++|..+|.++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445666777788888888888777654
No 463
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.25 E-value=1e+02 Score=25.34 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAIL 36 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l 36 (900)
..+...|+.+-..|++.+|+.+|+.++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566666666677766666665544
No 464
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=37.93 E-value=6.1e+02 Score=28.20 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhh------------HHHHHHHHHHHHhh
Q 045355 651 DPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQK------------ILLALQAVKHLLRL 700 (900)
Q Consensus 651 ~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k------------~~~al~~~~~~~~~ 700 (900)
+-...|++||+..+. .+++++|+-.+|+++--|+ |..|..+|++|.+.
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 346679999999986 8899999999999998776 55666666666443
No 465
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.31 E-value=1.2e+02 Score=26.79 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
..|.+....|++..|.+.+.++-+..+.....+..-+..-..+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34445555666666666666665544433333433344444333
No 466
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.61 E-value=4.4e+02 Score=28.41 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcCChhHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTP------TVIDLYSVKSRILKHA----GDLAAAATLADEARCMDLADRYVN 451 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P------~~~~~~~~la~i~~~~----G~~~eA~~~~~~al~ldp~d~~l~ 451 (900)
++...|..|.+.||-+.|++.+.+..+.+- +-.-....+|.+|... ...++|...+++.-..+-.||+-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK- 184 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK- 184 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH-
Confidence 778999999999999999999988776543 2223344566666544 35666777777766666666633
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 045355 452 SECVKRMLQADQVSLAEKTA 471 (900)
Q Consensus 452 ~~~a~~~l~~g~~eeA~~~~ 471 (900)
.+-+.|.+...++.+|-.++
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLF 204 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 23344555566788887665
No 467
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.60 E-value=5.8e+02 Score=27.63 Aligned_cols=278 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc
Q 045355 192 LLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYR 271 (900)
Q Consensus 192 ~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~ 271 (900)
+..+|..-...|+..-|...++. ..--....-.++.+|+++.| +.++++..-.+.-+...+-.--.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~--------Ep~~~~qVplLL~m~e~e~A---L~kAi~SgD~DLi~~vLl~L~~~--- 68 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL--------EPRASKQVPLLLKMGEDELA---LNKAIESGDTDLIYLVLLHLKRK--- 68 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc--------CCChHHHHHHHhcCCchHHH---HHHHHHcCCccHHHHHHHHHHHh---
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhcC---cchhhhhchhhcccchHHHHHHHHhHHhhhhcCCC----hhhhchhhhhcCC
Q 045355 272 DNGNYSSGEIDELDALYKSLAQQYT---WSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVP----SLFSDLSPLYDQP 344 (900)
Q Consensus 272 ~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p----~~~~~L~~ly~~~ 344 (900)
...+++...+.....+...+. +......+.-.|...+++.+.....++..+....+ ..+.....+|...
T Consensus 69 ----l~~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~ 144 (319)
T PF04840_consen 69 ----LSLSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKS 144 (319)
T ss_pred ----CCHHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045355 345 GKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRIL 424 (900)
Q Consensus 345 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~ 424 (900)
.+......+++...+.+....... ...............-.-...+|+...|.++-.+. .=.+...|+.+-+.|
T Consensus 145 k~~~f~~~~~e~q~~Ll~~Q~~Le---~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aL 218 (319)
T PF04840_consen 145 KNDAFEAKLIEEQIKLLEYQKELE---EKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKAL 218 (319)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH---HHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcC
Q 045355 425 KHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQG 504 (900)
Q Consensus 425 ~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g 504 (900)
...|+|++=...... ...|.-..-.+...+..|+..+|...+.+...+ +....|.+.|
T Consensus 219 a~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~~-----------------~rv~~y~~~~ 276 (319)
T PF04840_consen 219 AENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYIPKIPDE-----------------ERVEMYLKCG 276 (319)
T ss_pred HhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHHHhCChH-----------------HHHHHHHHCC
Q ss_pred ChHHHHHHHHH
Q 045355 505 DLGRALKKFLA 515 (900)
Q Consensus 505 ~~~~Alk~~~~ 515 (900)
++.+|.+..-+
T Consensus 277 ~~~~A~~~A~~ 287 (319)
T PF04840_consen 277 DYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHH
No 468
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.29 E-value=3.2e+02 Score=32.17 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=57.5
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 18 KSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 18 ~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
.+-+.+..+.|....+.-+.........+...+..+-..|..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3334556666666666655444445556667777777788888888888888888877 55677777777788777777
Q ss_pred HHHH
Q 045355 98 KCYR 101 (900)
Q Consensus 98 ~~~~ 101 (900)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7766
No 469
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.52 E-value=70 Score=20.64 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=10.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNA 103 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~a 103 (900)
..+-..|.+.|++++|.+.|.+.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444555554444443
No 470
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.99 E-value=1.9e+02 Score=23.88 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
.+...++..|+.+-..|+|++|+.+|.+++.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456677888888888888888888887765
No 471
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.83 E-value=93 Score=20.14 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 226 KEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 226 ~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
|..+..++.+.|+++.|..+|+...+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455666667777777777777666553
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.25 E-value=1e+03 Score=29.72 Aligned_cols=26 Identities=15% Similarity=-0.056 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 46 LSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 46 ~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
+..++..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 34556666666777777777666665
No 473
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.15 E-value=2.3e+02 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCCh------hHHHHHHHHHHHcCChHHHHHH
Q 045355 420 KSRILKHAGDLAAAATLADEARCMDLADR------YVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 420 la~i~~~~G~~~eA~~~~~~al~ldp~d~------~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
.|.-+...|+|-+|-+.++.+....+.+. .|....+.+..+.|+..-|..+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555667777777777777765444332 4455556666777777766654
No 474
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.07 E-value=6.2e+02 Score=27.18 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=30.6
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETR 134 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (900)
..+++.+.++..++.+..+|--.+.++..+.++.++| ++.+.+..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI 155 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAI 155 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4566777777777777777777777777777777777 44444433
No 475
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.40 E-value=3.2e+02 Score=31.64 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 23 KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN-----DIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 23 g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
..|.-|+-.+-.+.+..|.. ....++.+|.+++.. +-.+..-|..+|..+++.++|.+|+
T Consensus 274 ~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHH
Confidence 45677777777766666642 245567777777752 2223344778899999999999999
Q ss_pred HHHHHHH
Q 045355 98 KCYRNAL 104 (900)
Q Consensus 98 ~~~~~al 104 (900)
.++-.+-
T Consensus 339 ~~Wa~aa 345 (618)
T PF05053_consen 339 RSWAEAA 345 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887764
No 476
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=89 Score=32.96 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHcCChH
Q 045355 449 YVNSECVKRMLQADQVS 465 (900)
Q Consensus 449 ~l~~~~a~~~l~~g~~e 465 (900)
.|..++..|+-|+.++.
T Consensus 56 ~IraK~~EYLdRAEkLK 72 (439)
T KOG0739|consen 56 SIRAKFTEYLDRAEKLK 72 (439)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777775544433
No 477
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.00 E-value=5.4e+02 Score=31.90 Aligned_cols=80 Identities=19% Similarity=0.069 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCC-----------HHHHHHHHHHHHhc-CcCChhHHHHHHHHHHH
Q 045355 397 DVALSKIDEAIEHTPTVIDLYSVKSRILKH----AGD-----------LAAAATLADEARCM-DLADRYVNSECVKRMLQ 460 (900)
Q Consensus 397 ~~Al~~~~~al~~~P~~~~~~~~la~i~~~----~G~-----------~~eA~~~~~~al~l-dp~d~~l~~~~a~~~l~ 460 (900)
..|..+-.+.-....+.++++..+|..... .|. .+.-.+.|.+.+.. |-.|.-......++...
T Consensus 1164 ~da~klk~~me~qk~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~ 1243 (1304)
T KOG1114|consen 1164 PDAVKLKKKMEKQKDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKA 1243 (1304)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHH
Confidence 335555554444444556666666665544 333 33345566666554 66666666677788888
Q ss_pred cCChHHHHHHHHHhcc
Q 045355 461 ADQVSLAEKTAALFTK 476 (900)
Q Consensus 461 ~g~~eeA~~~~~~~~~ 476 (900)
.|++-.|.+.+....+
T Consensus 1244 ~~~yGr~lK~l~klie 1259 (1304)
T KOG1114|consen 1244 LGQYGRALKALLKLIE 1259 (1304)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999998877766
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.07 E-value=1.2e+03 Score=29.90 Aligned_cols=53 Identities=19% Similarity=0.023 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 045355 418 SVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD 477 (900)
Q Consensus 418 ~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~ 477 (900)
..++--+..+|++-+|.+.....++- | ..+...++++..+++|+..+.+..++
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~------~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-P------EEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-H------HHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 55666677788888888777776552 2 23455667777888898887776653
No 479
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=31.96 E-value=6.5e+02 Score=28.52 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcCCHHHHHHH
Q 045355 151 FAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKES--KIVDKLAYKEQ 228 (900)
Q Consensus 151 la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~--~~p~~~~~~~~ 228 (900)
++.......+.+.+..+|-.|+..-.... -.........+.+.+.|..++++..+..-+. +.||+..+ ..
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-------~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~-n~ 143 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSY-------LLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF-NL 143 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCccccc-------ccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH-HH
Confidence 34444444556778777777665422211 1112334677889999999999999986544 46776555 45
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHh
Q 045355 229 EVSLLVKIGRLEEAAELYRALLSMN-PDN-YSYYEGLQKCL 267 (900)
Q Consensus 229 la~~~~~~g~~~eA~~~~~~al~~~-p~~-~~~~~~l~~~~ 267 (900)
+-+.+++.|+|..|..+...+.... .++ ......+..|+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 7788999999999999988776553 333 33444444555
No 480
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.88 E-value=53 Score=33.52 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHH---------HhcCHHHHHHHHHHHHHhCCCCH
Q 045355 114 LRDLSLLQA---------QMRDLTGFVETRQQLLTLKPNHR 145 (900)
Q Consensus 114 ~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 145 (900)
+...|..+. ..++...|+..+++++.++|...
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 555666553 44577888888888888887653
No 481
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.25 E-value=98 Score=20.01 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 417 YSVKSRILKHAGDLAAAATLADEAR 441 (900)
Q Consensus 417 ~~~la~i~~~~G~~~eA~~~~~~al 441 (900)
|..+-..+.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 482
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.20 E-value=89 Score=25.70 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++.+|...-..|+|++|+.+|.++++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 345566777777777888888888887776
No 483
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.09 E-value=1.5e+02 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 60 SEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 60 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+..++..++.++..| ++..+..++.++...|+.++|....+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 444555566666666 4556777788888888888888888888888883
No 484
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=29.88 E-value=5.5e+02 Score=25.26 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----c-
Q 045355 23 KQYKKGLKAADAILKKFPEHGETLSMKGLTLNC-----MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD-----R- 91 (900)
Q Consensus 23 g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~-----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g- 91 (900)
++|++|.++|..--. .-.++..-+.+|..++. .++...|++.+..+-. .+.+.+.+.+|.++..- +
T Consensus 49 knF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 455555555544322 12345555666654442 3578899999988876 55677888888887642 2
Q ss_pred -CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 92 -EYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 92 -~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
+..+|.+++.++..++ +..+.+.|+..++.
T Consensus 126 pd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred CCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 3778999999987664 44555666655554
No 485
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=7.6e+02 Score=26.83 Aligned_cols=47 Identities=4% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 221 DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
.++.+-+..|..+.-.|++.++...+....-+.|+........+.-.
T Consensus 211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~~~~ 257 (449)
T COG3014 211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYLVFF 257 (449)
T ss_pred chHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhccee
Confidence 35666667777788888999999999999999888666655555443
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.87 E-value=2.3e+02 Score=30.78 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCh-hHHHHHHHH
Q 045355 396 YDVALSKIDEAIEHTP---TVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADR-YVNSECVKR 457 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P---~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~-~l~~~~a~~ 457 (900)
.++.+..++..|..-| ..+..|..+|+++...|.+++.+..|++|+.....-. .+...++.+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4577778888888888 4677999999999999999999999999998876643 343333333
No 487
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=27.85 E-value=5.9e+02 Score=26.92 Aligned_cols=74 Identities=5% Similarity=-0.068 Sum_probs=43.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH---HhccC----HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045355 50 GLTLNCMDRKSEAYELVRLGVKNDIK--SHVCWHVYGLLY---RSDRE----YREAIKCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 50 g~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~---~~~g~----~~eAi~~~~~al~~~p~~~~~~~~la~~ 120 (900)
...+...++|++=...+.+......+ ..+.-+..+... ..... ...-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34566788888888888877653222 111112222111 11111 1235666677778899999998888887
Q ss_pred HHH
Q 045355 121 QAQ 123 (900)
Q Consensus 121 ~~~ 123 (900)
+..
T Consensus 87 ~~~ 89 (277)
T PF13226_consen 87 WVH 89 (277)
T ss_pred HHH
Confidence 754
No 488
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.54 E-value=2.2e+02 Score=34.23 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPE----HGETLSMKGLTLNCM--DRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~----~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
...+..+++.++|..+.--|..++..-|. ........+.++..+ |++..++.-..-++...|....++...+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 34444555555555554445444444442 122233333333332 455555555555555555555555555555
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIE 112 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~ 112 (900)
|...+.++-|++...-.....|.+..
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 55555555555555444455555533
No 489
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.52 E-value=1e+02 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...+...|+.+=..|+|++|+.+|..++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566677777777777777777777655
No 490
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=27.30 E-value=1.4e+02 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
..++..|..+-+.|+|++|+.+|.+++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566666666666666666665543
No 491
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.47 E-value=3.2e+02 Score=21.46 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHhCCCHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETL-------SMKGLTLNCMDRKSEAYEL 65 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~-------~~lg~~~~~~g~~~eA~~~ 65 (900)
+..+..++..|+|=+|-+.++.+....|.. .-. ..-|....+.|+..-|..+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 566777778888888888888777654433 222 2223334455666555543
No 492
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=26.18 E-value=1.1e+03 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcc
Q 045355 256 NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFL 309 (900)
Q Consensus 256 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~ 309 (900)
....|..+++++. -...+...-..-.+.....+|.++....++..+.
T Consensus 201 ~L~GWL~L~rv~~-------~~~~~p~qlk~~i~~Wq~~yPqhPaA~~~P~~l~ 247 (604)
T COG3107 201 ALQGWLDLARVYK-------DNGSDPPQLKAGIEDWQKRYPQHPAAKMLPTALT 247 (604)
T ss_pred ccchHHHHHHHHH-------hcccCHHHHHHHHHHHHhcCCCCchhhhChHHHH
Confidence 3456777777762 2234556667777777888888887765554433
No 493
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=24.93 E-value=1.9e+02 Score=25.58 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Q 045355 497 GESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKL 573 (900)
Q Consensus 497 g~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~a~~~~~~~y~~l 573 (900)
+--+.+.|+|++|.+.+.+..+.+..-..-|..+-.--.+.....--+=++--+|.+-..--+..-++..|.+|-++
T Consensus 27 Al~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~elI~lyk~~ 103 (104)
T PRK09591 27 AFAAMREGNFDLAEQKLNQSNEELLEAHHAQTKLLQEYASGTEIKIEIIMVHAQDHLMTTMTLREVAKEMLALYKKV 103 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeehhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999988877777666655443333222222233445777777777777788888888553
No 494
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.73 E-value=5.3e+02 Score=23.63 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 397 DVALSKIDEAIEHT--PTVIDLYSVKSRILKHAGDLAAAATLADE 439 (900)
Q Consensus 397 ~~Al~~~~~al~~~--P~~~~~~~~la~i~~~~G~~~eA~~~~~~ 439 (900)
+.+.++|.-..... -..+..|...|..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34566676655543 36677888899999999999999998874
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.06 E-value=1.1e+02 Score=31.23 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=13.3
Q ss_pred HHhccCHHHHHHHHHHHHhhC
Q 045355 87 YRSDREYREAIKCYRNALRID 107 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~ 107 (900)
.+..|+|+.|+++..-+|+.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcC
Confidence 355666666666666666654
No 496
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.64 E-value=1.6e+02 Score=24.17 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++.+|+..-..|+|++|+.+|.++++
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345667777777777888888777777765
No 497
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=23.37 E-value=27 Score=40.92 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCC-cHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILK--KFPE-HGETLSMKGLTLNCMDRKSEAYELVRLG--VKNDIK-SHVCW 80 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~--~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~a--l~~~p~-~~~~~ 80 (900)
.+..-++..+..+++.|++..|..++.++-. ..|. ..+.....+.+....|++++|+..+... ..+.+. ....+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 3455667778888899999999999998762 2332 3455677788899999999999998741 112221 23345
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPD-------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
...+.++...|++-+|...+-..-.+-++ ...+|..|..+ .. ..+.............|+.++.
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l----~~-----~~L~~~~~~~~~~l~GWl~La~ 172 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQL----PP-----EQLQQLRRASEPDLQGWLELAL 172 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcC----CH-----HHHHhhhcCCCHHHHHHHHHHH
Confidence 66788999999998888876554433321 12223333222 11 0112222223334467888888
Q ss_pred HHHHc
Q 045355 154 SHHLN 158 (900)
Q Consensus 154 ~~~~~ 158 (900)
++...
T Consensus 173 i~~~~ 177 (536)
T PF04348_consen 173 IYRQY 177 (536)
T ss_dssp -----
T ss_pred HHHhc
Confidence 88774
No 498
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=23.37 E-value=9e+02 Score=25.60 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=12.5
Q ss_pred HHHHHhhccHHHHHHHHHH
Q 045355 16 IVKSYETKQYKKGLKAADA 34 (900)
Q Consensus 16 a~~~~~~g~~~~Al~~~~~ 34 (900)
...+...|+.++|++++-.
T Consensus 2 I~~~Ll~G~~~~Av~~al~ 20 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALD 20 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3456777888888876544
No 499
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.22 E-value=1.6e+02 Score=24.19 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++..|+..-..|+|++|+.+|..++.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455677777777777888888888777765
No 500
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.20 E-value=4.1e+02 Score=31.31 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 045355 58 RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (900)
..+.+...++.-+.....+.......+..+-..+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3344444444333333333333444444444555555555555555555544 334444444444444444444433
Done!