Query 045355
Match_columns 900
No_of_seqs 1333 out of 3073
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-36 3.6E-41 342.2 45.7 385 13-505 3-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2E-34 7E-39 323.6 42.7 358 6-462 30-387 (388)
3 2xpi_A Anaphase-promoting comp 100.0 6E-34 2.1E-38 338.7 42.1 491 9-714 84-593 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.5E-32 8.6E-37 324.7 38.3 422 9-458 117-594 (597)
5 3fp2_A TPR repeat-containing p 100.0 3.2E-31 1.1E-35 310.6 37.9 411 9-525 25-497 (537)
6 2gw1_A Mitochondrial precursor 100.0 1.1E-30 3.6E-35 304.1 40.6 384 8-452 5-487 (514)
7 2y4t_A DNAJ homolog subfamily 100.0 1.4E-30 4.6E-35 298.1 40.3 338 25-457 8-372 (450)
8 3ieg_A DNAJ homolog subfamily 100.0 1.3E-29 4.3E-34 279.7 44.2 334 9-459 3-351 (359)
9 2gw1_A Mitochondrial precursor 100.0 4.3E-30 1.5E-34 298.9 41.5 383 42-524 5-483 (514)
10 2y4t_A DNAJ homolog subfamily 100.0 2.2E-29 7.7E-34 288.0 41.7 344 5-447 22-414 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 9.8E-28 3.4E-32 264.5 41.7 326 42-476 2-334 (359)
12 3fp2_A TPR repeat-containing p 100.0 7.4E-28 2.5E-32 281.9 41.3 383 42-524 24-462 (537)
13 4g1t_A Interferon-induced prot 100.0 1E-27 3.6E-32 276.2 33.1 404 22-523 24-463 (472)
14 3hym_B Cell division cycle pro 100.0 1E-26 3.6E-31 253.4 32.8 309 32-464 11-321 (330)
15 3hym_B Cell division cycle pro 100.0 1.3E-26 4.6E-31 252.5 32.7 294 5-431 18-322 (330)
16 4g1t_A Interferon-induced prot 100.0 1.4E-26 4.8E-31 266.8 32.7 367 12-454 54-470 (472)
17 1fch_A Peroxisomal targeting s 99.9 5.9E-26 2E-30 252.0 24.6 298 53-443 35-359 (368)
18 4eqf_A PEX5-related protein; a 99.9 3E-25 1E-29 246.5 23.9 264 9-290 65-352 (365)
19 2h6f_A Protein farnesyltransfe 99.9 5.8E-25 2E-29 244.1 24.9 251 9-267 97-363 (382)
20 2ooe_A Cleavage stimulation fa 99.9 6.8E-23 2.3E-27 239.9 43.6 419 10-524 14-497 (530)
21 3cv0_A Peroxisome targeting si 99.9 7.5E-25 2.6E-29 238.3 25.0 273 9-299 21-320 (327)
22 2xm6_A Protein corresponding t 99.9 1.2E-22 3.9E-27 235.5 44.1 370 11-457 41-449 (490)
23 1fch_A Peroxisomal targeting s 99.9 9.2E-25 3.2E-29 242.3 25.0 267 9-294 64-359 (368)
24 4eqf_A PEX5-related protein; a 99.9 8.7E-25 3E-29 242.7 23.5 288 30-440 48-353 (365)
25 3cv0_A Peroxisome targeting si 99.9 1.3E-23 4.3E-28 228.5 26.4 285 43-447 21-319 (327)
26 2xm6_A Protein corresponding t 99.9 4.1E-21 1.4E-25 222.4 48.0 369 27-520 25-433 (490)
27 3u4t_A TPR repeat-containing p 99.9 3.1E-23 1.1E-27 219.6 24.4 247 10-267 4-265 (272)
28 2h6f_A Protein farnesyltransfe 99.9 8.5E-24 2.9E-28 234.7 20.4 255 36-301 90-355 (382)
29 3uq3_A Heat shock protein STI1 99.9 1.7E-22 5.7E-27 211.5 27.1 241 8-267 4-257 (258)
30 2pl2_A Hypothetical conserved 99.9 1.1E-22 3.8E-27 208.3 22.9 200 40-250 2-212 (217)
31 2pl2_A Hypothetical conserved 99.9 1.8E-22 6.1E-27 206.8 23.1 201 5-216 1-212 (217)
32 2ooe_A Cleavage stimulation fa 99.9 2.6E-20 8.8E-25 218.0 44.2 389 32-522 2-457 (530)
33 3mkr_A Coatomer subunit epsilo 99.9 1E-21 3.4E-26 210.7 26.3 278 15-321 5-288 (291)
34 3u4t_A TPR repeat-containing p 99.9 1E-21 3.6E-26 207.8 25.2 261 42-428 2-269 (272)
35 3sf4_A G-protein-signaling mod 99.9 7.2E-22 2.5E-26 221.7 25.3 309 3-432 3-365 (406)
36 3uq3_A Heat shock protein STI1 99.9 2.8E-21 9.5E-26 202.2 25.8 227 42-295 4-237 (258)
37 3mkr_A Coatomer subunit epsilo 99.9 7.2E-21 2.5E-25 204.0 28.4 272 52-468 8-285 (291)
38 3sf4_A G-protein-signaling mod 99.9 5.5E-21 1.9E-25 214.5 24.5 304 40-464 6-363 (406)
39 4a1s_A PINS, partner of inscut 99.9 5.9E-21 2E-25 215.3 22.7 283 43-446 48-375 (411)
40 3e4b_A ALGK; tetratricopeptide 99.9 6.4E-21 2.2E-25 218.0 22.9 390 13-476 7-420 (452)
41 4a1s_A PINS, partner of inscut 99.9 6.6E-21 2.3E-25 214.8 22.3 281 7-299 46-377 (411)
42 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.9E-20 9.8E-25 196.7 24.4 246 20-288 16-269 (275)
43 3ro2_A PINS homolog, G-protein 99.9 1.4E-20 4.8E-25 204.5 22.2 278 8-297 4-335 (338)
44 2q7f_A YRRB protein; TPR, prot 99.9 1.8E-20 6.2E-25 194.3 21.3 212 44-265 24-235 (243)
45 2q7f_A YRRB protein; TPR, prot 99.9 2.4E-20 8E-25 193.4 21.7 219 9-237 23-241 (243)
46 2vq2_A PILW, putative fimbrial 99.9 1.6E-19 5.6E-24 184.4 27.6 216 38-263 3-222 (225)
47 1xi4_A Clathrin heavy chain; a 99.8 2.5E-17 8.5E-22 199.1 49.3 388 2-471 980-1378(1630)
48 2ho1_A Type 4 fimbrial biogene 99.8 9.6E-20 3.3E-24 190.3 25.3 216 38-263 31-249 (252)
49 3ro2_A PINS homolog, G-protein 99.8 5.7E-20 1.9E-24 199.7 24.4 208 43-254 5-254 (338)
50 1xi4_A Clathrin heavy chain; a 99.8 8.3E-18 2.8E-22 203.2 43.5 435 15-516 1055-1531(1630)
51 4abn_A Tetratricopeptide repea 99.8 4.5E-20 1.5E-24 212.3 23.0 218 24-249 83-318 (474)
52 3e4b_A ALGK; tetratricopeptide 99.8 2.6E-19 8.8E-24 204.6 28.5 349 47-518 7-386 (452)
53 3vtx_A MAMA; tetratricopeptide 99.8 1.3E-19 4.4E-24 179.8 22.3 173 76-258 4-176 (184)
54 1ouv_A Conserved hypothetical 99.8 1.1E-18 3.9E-23 185.0 31.0 234 7-262 4-261 (273)
55 2ho1_A Type 4 fimbrial biogene 99.8 9.4E-19 3.2E-23 182.7 28.1 210 9-228 37-248 (252)
56 2vq2_A PILW, putative fimbrial 99.8 1.8E-18 6.2E-23 176.5 28.6 215 5-229 4-222 (225)
57 3vtx_A MAMA; tetratricopeptide 99.8 5.2E-19 1.8E-23 175.4 23.4 166 10-178 6-171 (184)
58 1ouv_A Conserved hypothetical 99.8 3.9E-18 1.3E-22 180.8 30.9 237 39-301 2-258 (273)
59 2ond_A Cleavage stimulation fa 99.8 2.5E-18 8.5E-23 186.1 29.9 222 26-257 33-275 (308)
60 4i17_A Hypothetical protein; T 99.8 3.1E-19 1.1E-23 183.8 20.7 151 10-160 8-168 (228)
61 4i17_A Hypothetical protein; T 99.8 5.9E-18 2E-22 174.1 28.5 212 39-267 3-224 (228)
62 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.4E-18 8.2E-23 181.9 25.8 228 8-246 42-269 (275)
63 3dra_A Protein farnesyltransfe 99.8 6.5E-18 2.2E-22 180.1 28.8 251 7-267 30-303 (306)
64 3ulq_A Response regulator aspa 99.8 2.2E-18 7.4E-23 192.6 24.7 244 5-253 7-294 (383)
65 4abn_A Tetratricopeptide repea 99.8 9E-19 3.1E-23 201.4 20.5 214 58-290 83-317 (474)
66 2ond_A Cleavage stimulation fa 99.8 8.7E-18 3E-22 181.8 24.9 222 60-299 33-275 (308)
67 3nf1_A KLC 1, kinesin light ch 99.8 1.3E-18 4.6E-23 187.2 17.9 252 4-255 22-310 (311)
68 4gyw_A UDP-N-acetylglucosamine 99.8 4.3E-18 1.5E-22 203.4 23.7 170 2-171 2-171 (723)
69 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-18 7.6E-23 206.0 20.5 173 38-220 4-176 (723)
70 3ulq_A Response regulator aspa 99.8 4.4E-18 1.5E-22 190.1 20.0 235 14-254 108-370 (383)
71 3qky_A Outer membrane assembly 99.8 4.9E-17 1.7E-21 171.1 25.2 200 36-262 8-234 (261)
72 3nf1_A KLC 1, kinesin light ch 99.8 2.6E-18 9E-23 184.9 15.5 249 39-297 23-310 (311)
73 2pzi_A Probable serine/threoni 99.7 3.3E-17 1.1E-21 196.8 23.1 199 10-222 395-609 (681)
74 1qqe_A Vesicular transport pro 99.7 4.4E-17 1.5E-21 174.7 20.2 226 24-266 32-283 (292)
75 3qky_A Outer membrane assembly 99.7 6.6E-17 2.3E-21 170.1 20.7 196 6-208 12-251 (261)
76 3q15_A PSP28, response regulat 99.7 2.3E-15 7.7E-20 167.8 33.2 251 1-255 3-293 (378)
77 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-18 3.1E-22 160.6 11.5 146 15-160 3-149 (150)
78 3q15_A PSP28, response regulat 99.7 1.3E-16 4.4E-21 177.9 22.1 236 12-253 104-366 (378)
79 1hz4_A MALT regulatory protein 99.7 2.4E-15 8.2E-20 167.1 30.8 237 44-293 15-281 (373)
80 3dss_A Geranylgeranyl transfer 99.7 1.3E-15 4.5E-20 163.0 27.3 239 19-267 39-319 (331)
81 3urz_A Uncharacterized protein 99.7 2.7E-16 9.2E-21 159.4 20.9 187 10-223 5-191 (208)
82 2pzi_A Probable serine/threoni 99.7 9E-17 3.1E-21 193.0 20.3 188 37-238 388-583 (681)
83 1hz4_A MALT regulatory protein 99.7 1E-15 3.5E-20 170.0 26.1 276 11-297 16-325 (373)
84 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.4E-15 4.7E-20 156.3 23.8 206 9-257 4-218 (225)
85 3urz_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 155.0 21.7 132 44-179 55-188 (208)
86 3as5_A MAMA; tetratricopeptide 99.7 1.8E-15 6.2E-20 148.8 22.7 166 8-173 7-172 (186)
87 3edt_B KLC 2, kinesin light ch 99.7 1.7E-16 6E-21 167.7 16.0 230 21-252 13-281 (283)
88 1qqe_A Vesicular transport pro 99.7 7.9E-16 2.7E-20 164.9 20.8 218 11-233 38-284 (292)
89 4e6h_A MRNA 3'-END-processing 99.7 4.9E-13 1.7E-17 157.8 45.0 438 13-523 70-574 (679)
90 3as5_A MAMA; tetratricopeptide 99.7 1.4E-15 4.8E-20 149.6 19.5 169 44-256 9-177 (186)
91 1b89_A Protein (clathrin heavy 99.7 2.1E-16 7E-21 173.5 14.7 289 52-473 12-307 (449)
92 3dra_A Protein farnesyltransfe 99.7 5.2E-15 1.8E-19 157.6 24.2 227 57-301 47-295 (306)
93 3q7a_A Farnesyltransferase alp 99.7 1.2E-14 3.9E-19 156.3 26.5 251 7-267 51-347 (349)
94 4gco_A Protein STI-1; structur 99.7 5.8E-16 2E-20 143.1 14.1 120 35-154 5-124 (126)
95 4ga2_A E3 SUMO-protein ligase 99.7 1.7E-16 5.9E-21 151.7 10.3 147 48-204 2-149 (150)
96 1b89_A Protein (clathrin heavy 99.6 9.1E-16 3.1E-20 168.3 15.0 378 22-476 16-416 (449)
97 2r5s_A Uncharacterized protein 99.6 1.3E-15 4.6E-20 149.7 12.9 163 9-175 6-171 (176)
98 4gco_A Protein STI-1; structur 99.6 5.4E-15 1.9E-19 136.6 15.9 115 7-121 11-125 (126)
99 3dss_A Geranylgeranyl transfer 99.6 7.1E-14 2.4E-18 149.6 26.7 230 55-299 41-309 (331)
100 3qou_A Protein YBBN; thioredox 99.6 7.1E-15 2.4E-19 157.0 18.8 168 5-175 113-282 (287)
101 2yhc_A BAMD, UPF0169 lipoprote 99.6 8.4E-15 2.9E-19 150.3 18.4 207 42-299 3-218 (225)
102 3edt_B KLC 2, kinesin light ch 99.6 2E-15 6.9E-20 159.5 14.1 231 54-294 12-281 (283)
103 3gyz_A Chaperone protein IPGC; 99.6 1.7E-15 5.8E-20 144.4 10.8 120 26-145 19-138 (151)
104 2r5s_A Uncharacterized protein 99.6 7.4E-15 2.5E-19 144.4 13.7 170 39-217 2-172 (176)
105 3qou_A Protein YBBN; thioredox 99.6 5.6E-14 1.9E-18 150.0 19.4 172 38-217 112-283 (287)
106 4f3v_A ESX-1 secretion system 99.6 1.5E-14 5.1E-19 150.4 13.8 201 56-266 19-250 (282)
107 2vgx_A Chaperone SYCD; alterna 99.6 1.2E-14 4.2E-19 138.4 11.7 121 29-149 7-127 (148)
108 4e6h_A MRNA 3'-END-processing 99.6 3.3E-11 1.1E-15 142.3 43.1 390 25-521 48-535 (679)
109 2c2l_A CHIP, carboxy terminus 99.6 1.9E-14 6.4E-19 153.2 13.6 199 40-253 1-200 (281)
110 4f3v_A ESX-1 secretion system 99.5 1.7E-14 5.9E-19 149.9 12.4 214 7-230 5-248 (282)
111 2vsy_A XCC0866; transferase, g 99.5 4.9E-14 1.7E-18 166.0 17.9 155 22-179 2-159 (568)
112 2xcb_A PCRH, regulatory protei 99.5 2.3E-14 7.9E-19 135.4 10.9 125 30-154 5-129 (142)
113 2ifu_A Gamma-SNAP; membrane fu 99.5 1.9E-13 6.4E-18 147.5 18.7 207 21-257 3-228 (307)
114 3q7a_A Farnesyltransferase alp 99.5 2.6E-13 8.8E-18 145.8 19.4 237 43-297 54-335 (349)
115 2fo7_A Synthetic consensus TPR 99.5 6.7E-13 2.3E-17 122.4 19.0 133 11-143 3-135 (136)
116 2vsy_A XCC0866; transferase, g 99.5 1.6E-13 5.4E-18 161.7 17.5 165 56-264 2-169 (568)
117 3gyz_A Chaperone protein IPGC; 99.5 3.4E-13 1.2E-17 128.4 15.9 106 6-111 33-138 (151)
118 3upv_A Heat shock protein STI1 99.5 8E-13 2.7E-17 121.6 16.6 114 8-121 3-122 (126)
119 3upv_A Heat shock protein STI1 99.5 5E-13 1.7E-17 123.0 15.0 118 40-157 1-124 (126)
120 1p5q_A FKBP52, FK506-binding p 99.5 5.3E-14 1.8E-18 153.8 9.8 145 21-165 125-284 (336)
121 2ifu_A Gamma-SNAP; membrane fu 99.5 1.4E-12 4.9E-17 140.5 20.8 215 9-244 10-253 (307)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.3E-12 4.4E-17 132.2 19.1 135 9-146 6-156 (213)
123 2e2e_A Formate-dependent nitri 99.5 3.2E-13 1.1E-17 132.5 14.2 135 15-149 16-153 (177)
124 2c2l_A CHIP, carboxy terminus 99.5 3.3E-13 1.1E-17 143.5 14.2 197 7-218 2-199 (281)
125 1a17_A Serine/threonine protei 99.4 3.5E-12 1.2E-16 123.0 19.2 127 11-137 15-143 (166)
126 3rjv_A Putative SEL1 repeat pr 99.4 4.2E-12 1.4E-16 128.8 20.6 178 61-254 4-199 (212)
127 2lni_A Stress-induced-phosphop 99.4 2E-12 7E-17 119.3 15.8 118 8-125 15-132 (133)
128 2lni_A Stress-induced-phosphop 99.4 1.7E-12 5.9E-17 119.9 15.3 122 39-160 12-133 (133)
129 2fo7_A Synthetic consensus TPR 99.4 4.6E-12 1.6E-16 116.7 18.0 127 44-170 2-128 (136)
130 1dce_A Protein (RAB geranylger 99.4 2.4E-13 8.1E-18 158.5 11.4 179 19-207 38-244 (567)
131 3sz7_A HSC70 cochaperone (SGT) 99.4 1.3E-12 4.5E-17 126.5 14.8 118 39-156 7-124 (164)
132 1a17_A Serine/threonine protei 99.4 4.9E-12 1.7E-16 121.9 18.2 133 43-175 13-147 (166)
133 2xcb_A PCRH, regulatory protei 99.4 1.5E-12 5.3E-17 122.7 14.1 118 6-123 15-132 (142)
134 3rjv_A Putative SEL1 repeat pr 99.4 5.6E-12 1.9E-16 127.8 18.6 178 26-221 3-200 (212)
135 2vyi_A SGTA protein; chaperone 99.4 2.4E-12 8E-17 118.2 14.4 119 42-160 11-129 (131)
136 2vyi_A SGTA protein; chaperone 99.4 4.9E-12 1.7E-16 116.1 16.2 121 7-127 10-130 (131)
137 2vgx_A Chaperone SYCD; alterna 99.4 3.1E-12 1.1E-16 121.6 14.9 113 63-178 7-119 (148)
138 3sz7_A HSC70 cochaperone (SGT) 99.4 3.9E-12 1.3E-16 123.1 15.7 117 6-122 8-124 (164)
139 1p5q_A FKBP52, FK506-binding p 99.4 5.6E-12 1.9E-16 137.6 18.6 132 8-139 146-293 (336)
140 3mv2_B Coatomer subunit epsilo 99.4 2.3E-11 7.8E-16 128.1 21.7 231 13-259 17-289 (310)
141 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.7E-17 153.0 12.7 191 55-255 40-270 (567)
142 2fbn_A 70 kDa peptidylprolyl i 99.4 7.4E-13 2.5E-17 132.7 9.5 147 19-165 14-176 (198)
143 1na0_A Designed protein CTPR3; 99.4 1.5E-11 5.1E-16 111.7 17.4 120 39-158 4-124 (125)
144 3q49_B STIP1 homology and U bo 99.4 5.9E-12 2E-16 117.3 14.7 118 38-155 4-126 (137)
145 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 4E-13 1.4E-17 153.3 7.7 145 22-166 247-406 (457)
146 2uy1_A Cleavage stimulation fa 99.4 9.5E-10 3.3E-14 126.1 35.5 390 22-521 7-415 (493)
147 2qfc_A PLCR protein; TPR, HTH, 99.4 2.6E-11 8.8E-16 129.7 21.1 160 10-169 76-261 (293)
148 1hxi_A PEX5, peroxisome target 99.4 4.3E-12 1.5E-16 116.1 12.8 100 11-110 19-118 (121)
149 1hxi_A PEX5, peroxisome target 99.4 5.6E-12 1.9E-16 115.3 12.8 102 45-146 19-120 (121)
150 2hr2_A Hypothetical protein; a 99.3 2.1E-12 7.2E-17 121.6 9.9 101 10-110 12-135 (159)
151 4gcn_A Protein STI-1; structur 99.3 6.8E-12 2.3E-16 115.8 12.8 98 45-142 10-114 (127)
152 4gcn_A Protein STI-1; structur 99.3 9.2E-12 3.1E-16 114.9 13.6 110 7-117 6-122 (127)
153 3u3w_A Transcriptional activat 99.3 2.1E-11 7.2E-16 130.3 18.5 163 10-172 76-264 (293)
154 3q49_B STIP1 homology and U bo 99.3 1.3E-11 4.3E-16 115.1 14.5 121 5-125 5-130 (137)
155 3rkv_A Putative peptidylprolyl 99.3 6.9E-12 2.3E-16 121.1 13.1 113 9-121 11-142 (162)
156 2hr2_A Hypothetical protein; a 99.3 2.7E-12 9.2E-17 120.9 9.7 108 43-150 11-141 (159)
157 1elw_A TPR1-domain of HOP; HOP 99.3 2.6E-11 9.1E-16 108.9 16.0 112 43-154 4-115 (118)
158 2fbn_A 70 kDa peptidylprolyl i 99.3 1.3E-11 4.5E-16 123.5 15.3 130 9-138 38-184 (198)
159 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.6E-11 1.6E-15 120.6 19.4 130 44-179 7-152 (213)
160 2qfc_A PLCR protein; TPR, HTH, 99.3 1.1E-10 3.8E-15 124.6 23.0 175 40-218 72-266 (293)
161 2dba_A Smooth muscle cell asso 99.3 3.5E-11 1.2E-15 113.4 16.6 118 38-155 23-143 (148)
162 1elw_A TPR1-domain of HOP; HOP 99.3 3.8E-11 1.3E-15 107.8 16.2 114 8-121 3-116 (118)
163 3rkv_A Putative peptidylprolyl 99.3 1.2E-11 4E-16 119.4 12.9 116 43-158 11-145 (162)
164 1na0_A Designed protein CTPR3; 99.3 6.5E-11 2.2E-15 107.4 17.2 117 9-125 9-125 (125)
165 2e2e_A Formate-dependent nitri 99.3 1E-11 3.6E-16 121.6 12.4 124 53-179 20-146 (177)
166 2xev_A YBGF; tetratricopeptide 99.3 6.6E-11 2.3E-15 108.8 16.2 109 12-120 5-119 (129)
167 2xev_A YBGF; tetratricopeptide 99.3 5.1E-11 1.7E-15 109.6 15.4 116 44-159 3-124 (129)
168 2kck_A TPR repeat; tetratricop 99.3 1.8E-11 6.1E-16 109.0 10.8 106 39-144 2-110 (112)
169 3gw4_A Uncharacterized protein 99.3 3.6E-11 1.2E-15 120.1 14.1 157 19-175 2-177 (203)
170 3u3w_A Transcriptional activat 99.3 2.1E-10 7E-15 122.6 20.4 169 81-252 79-266 (293)
171 2dba_A Smooth muscle cell asso 99.2 8.9E-11 3E-15 110.5 15.1 118 6-123 25-145 (148)
172 3mv2_B Coatomer subunit epsilo 99.2 3E-10 1E-14 119.6 19.5 209 12-227 73-291 (310)
173 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 7.5E-11 2.6E-15 134.4 16.1 130 9-138 268-413 (457)
174 1elr_A TPR2A-domain of HOP; HO 99.2 5.6E-11 1.9E-15 108.9 12.1 112 43-155 4-122 (131)
175 1zu2_A Mitochondrial import re 99.2 3.8E-11 1.3E-15 112.7 10.5 91 21-111 14-125 (158)
176 2if4_A ATFKBP42; FKBP-like, al 99.2 1.4E-11 4.7E-16 134.6 8.6 134 10-143 180-331 (338)
177 1elr_A TPR2A-domain of HOP; HO 99.2 1.5E-10 5.3E-15 106.0 14.3 119 7-126 2-127 (131)
178 1wao_1 Serine/threonine protei 99.2 5.3E-12 1.8E-16 144.6 5.1 119 47-165 10-130 (477)
179 3gw4_A Uncharacterized protein 99.2 2.4E-10 8.1E-15 114.1 16.7 162 53-218 2-176 (203)
180 2uy1_A Cleavage stimulation fa 99.2 5.5E-08 1.9E-12 111.4 36.5 382 8-474 13-410 (493)
181 3k9i_A BH0479 protein; putativ 99.2 3.4E-11 1.2E-15 109.2 7.5 93 22-114 3-98 (117)
182 1wao_1 Serine/threonine protei 99.2 3.3E-11 1.1E-15 138.0 9.1 125 11-135 8-134 (477)
183 1zu2_A Mitochondrial import re 99.2 8.3E-11 2.8E-15 110.4 10.2 96 55-150 14-130 (158)
184 4b4t_Q 26S proteasome regulato 99.2 3.2E-10 1.1E-14 128.1 17.0 205 10-217 5-244 (434)
185 1ihg_A Cyclophilin 40; ppiase 99.2 2.2E-10 7.5E-15 126.5 15.2 121 45-165 225-361 (370)
186 3k9i_A BH0479 protein; putativ 99.2 4.3E-11 1.5E-15 108.4 7.9 95 55-149 2-99 (117)
187 1ihg_A Cyclophilin 40; ppiase 99.2 2.3E-10 7.8E-15 126.3 15.2 124 10-133 224-363 (370)
188 2kck_A TPR repeat; tetratricop 99.1 3.2E-10 1.1E-14 100.7 11.1 102 9-110 6-110 (112)
189 2if4_A ATFKBP42; FKBP-like, al 99.1 6.4E-11 2.2E-15 129.3 7.7 137 39-178 175-329 (338)
190 4b4t_Q 26S proteasome regulato 99.1 1.1E-09 3.7E-14 123.7 17.9 206 43-252 4-245 (434)
191 3ro3_A PINS homolog, G-protein 99.0 1.3E-09 4.4E-14 103.7 12.0 132 10-141 10-159 (164)
192 3ro3_A PINS homolog, G-protein 99.0 3.8E-09 1.3E-13 100.4 13.2 131 43-173 9-157 (164)
193 2kat_A Uncharacterized protein 99.0 5.4E-09 1.9E-13 93.9 12.6 95 27-121 3-99 (115)
194 2l6j_A TPR repeat-containing p 98.9 9.5E-10 3.3E-14 97.8 6.4 92 43-134 4-101 (111)
195 1na3_A Designed protein CTPR2; 98.9 1E-08 3.4E-13 87.4 11.2 81 43-123 9-89 (91)
196 2kat_A Uncharacterized protein 98.9 1.2E-08 4.1E-13 91.7 12.1 85 60-144 2-86 (115)
197 1na3_A Designed protein CTPR2; 98.9 1.8E-08 6.1E-13 85.8 12.0 86 74-159 6-91 (91)
198 2l6j_A TPR repeat-containing p 98.8 2.3E-09 7.9E-14 95.3 5.7 95 8-102 3-103 (111)
199 3ma5_A Tetratricopeptide repea 98.8 2.6E-08 8.9E-13 87.1 10.6 86 38-123 2-89 (100)
200 2kc7_A BFR218_protein; tetratr 98.7 1.5E-08 5.3E-13 88.0 7.4 89 13-109 4-93 (99)
201 2kc7_A BFR218_protein; tetratr 98.7 1.9E-08 6.6E-13 87.4 7.0 90 47-144 4-94 (99)
202 1klx_A Cysteine rich protein B 98.7 3.1E-07 1.1E-11 85.5 15.5 120 22-151 8-135 (138)
203 3ma5_A Tetratricopeptide repea 98.7 6.9E-08 2.4E-12 84.4 9.7 73 72-144 2-74 (100)
204 3n71_A Histone lysine methyltr 98.7 8E-08 2.7E-12 109.1 12.4 130 11-140 311-464 (490)
205 3ly7_A Transcriptional activat 98.7 4.2E-07 1.4E-11 97.2 17.0 140 6-146 193-345 (372)
206 3n71_A Histone lysine methyltr 98.4 1.3E-06 4.4E-11 99.2 13.7 135 117-253 315-465 (490)
207 1pc2_A Mitochondria fission pr 98.4 2.2E-06 7.4E-11 79.5 12.5 98 23-120 12-114 (152)
208 3bee_A Putative YFRE protein; 98.4 1.7E-06 5.9E-11 74.0 9.9 71 39-109 2-75 (93)
209 1klx_A Cysteine rich protein B 98.4 6.1E-06 2.1E-10 76.6 14.4 111 57-178 9-127 (138)
210 3ly7_A Transcriptional activat 98.3 1.8E-05 6.1E-10 84.7 19.1 159 69-262 186-349 (372)
211 3u64_A Protein TP_0956; tetrat 98.3 2.1E-05 7.2E-10 80.6 18.5 151 26-179 49-271 (301)
212 3bee_A Putative YFRE protein; 98.3 4.7E-06 1.6E-10 71.3 10.3 73 73-145 2-77 (93)
213 1pc2_A Mitochondria fission pr 98.2 9.9E-06 3.4E-10 75.0 12.0 93 59-151 14-111 (152)
214 3u64_A Protein TP_0956; tetrat 98.2 8.7E-05 3E-09 76.1 18.5 82 395-476 178-268 (301)
215 3qww_A SET and MYND domain-con 98.1 1.8E-05 6.1E-10 88.3 14.5 84 22-105 311-410 (433)
216 2v5f_A Prolyl 4-hydroxylase su 98.1 2.6E-05 8.9E-10 68.3 11.5 73 80-152 8-87 (104)
217 3qwp_A SET and MYND domain-con 98.1 1E-05 3.5E-10 90.5 11.0 96 11-106 289-400 (429)
218 2v5f_A Prolyl 4-hydroxylase su 98.0 3.5E-05 1.2E-09 67.5 11.5 75 44-118 6-87 (104)
219 4g26_A Pentatricopeptide repea 98.0 0.00045 1.5E-08 78.8 23.7 162 14-175 31-205 (501)
220 4g26_A Pentatricopeptide repea 97.9 0.00091 3.1E-08 76.3 23.9 116 127-252 86-204 (501)
221 3qww_A SET and MYND domain-con 97.8 0.00012 4.2E-09 81.5 14.3 103 157-261 310-425 (433)
222 1nzn_A CGI-135 protein, fissio 97.8 0.00021 7E-09 63.7 12.7 99 22-120 14-117 (126)
223 3qwp_A SET and MYND domain-con 97.7 0.00042 1.4E-08 77.3 15.9 108 152-261 294-414 (429)
224 1nzn_A CGI-135 protein, fissio 97.5 0.00083 2.8E-08 59.8 11.5 95 58-152 16-115 (126)
225 4h7y_A Dual specificity protei 97.3 0.0049 1.7E-07 56.0 13.7 108 38-146 8-129 (161)
226 3ffl_A Anaphase-promoting comp 97.2 0.0019 6.4E-08 60.1 10.2 132 11-155 22-165 (167)
227 4h7y_A Dual specificity protei 97.0 0.0075 2.6E-07 54.8 12.1 123 140-266 8-137 (161)
228 1y8m_A FIS1; mitochondria, unk 96.9 0.018 6.2E-07 52.0 14.0 81 40-120 36-120 (144)
229 3o48_A Mitochondria fission 1 96.9 0.0084 2.9E-07 53.4 11.3 80 41-120 38-121 (134)
230 3o48_A Mitochondria fission 1 96.4 0.012 4.2E-07 52.3 8.9 79 8-86 39-121 (134)
231 1y8m_A FIS1; mitochondria, unk 96.4 0.025 8.6E-07 51.0 10.7 80 7-86 37-120 (144)
232 3ffl_A Anaphase-promoting comp 96.1 0.02 6.9E-07 53.2 9.1 101 376-476 16-150 (167)
233 3kae_A CDC27, possible protein 96.0 0.95 3.3E-05 41.7 23.4 213 12-255 5-240 (242)
234 4gns_B Protein CSD3, chitin bi 95.7 0.072 2.4E-06 62.7 13.7 110 25-135 265-395 (754)
235 3kae_A CDC27, possible protein 95.6 0.95 3.3E-05 41.7 17.1 182 13-221 37-240 (242)
236 3txn_A 26S proteasome regulato 95.4 0.48 1.6E-05 51.3 18.0 170 79-252 21-210 (394)
237 1qsa_A Protein (soluble lytic 95.3 5.8 0.0002 45.7 30.4 130 8-148 5-139 (618)
238 3txn_A 26S proteasome regulato 95.2 4.4 0.00015 43.7 26.0 193 7-204 17-235 (394)
239 1qsa_A Protein (soluble lytic 95.0 6.9 0.00024 45.1 32.3 127 152-293 221-347 (618)
240 3mkq_A Coatomer beta'-subunit; 94.9 0.61 2.1E-05 56.2 18.9 98 19-137 609-707 (814)
241 3mkq_B Coatomer subunit alpha; 94.2 0.87 3E-05 43.0 13.8 106 42-168 7-112 (177)
242 4gns_B Protein CSD3, chitin bi 94.1 0.32 1.1E-05 57.3 13.1 116 55-170 260-396 (754)
243 3mkq_A Coatomer beta'-subunit; 93.6 1.2 4.2E-05 53.5 17.9 106 14-135 633-747 (814)
244 1zbp_A Hypothetical protein VP 93.1 1 3.4E-05 45.5 12.8 60 18-77 6-65 (273)
245 3mkq_B Coatomer subunit alpha; 93.1 2 6.9E-05 40.5 14.2 100 390-515 15-114 (177)
246 4b4t_P 26S proteasome regulato 92.8 5.8 0.0002 43.9 20.2 203 9-217 17-246 (445)
247 4b4t_P 26S proteasome regulato 92.3 6 0.00021 43.7 19.5 190 57-252 30-247 (445)
248 1zbp_A Hypothetical protein VP 92.0 2 6.8E-05 43.3 13.4 60 87-146 7-66 (273)
249 3spa_A Mtrpol, DNA-directed RN 91.8 1.3 4.6E-05 53.2 13.7 101 146-253 128-231 (1134)
250 2ff4_A Probable regulatory pro 91.7 1.7 5.8E-05 47.3 13.9 113 14-139 120-233 (388)
251 4fhn_B Nucleoporin NUP120; pro 91.7 3.8 0.00013 51.5 18.9 186 52-252 821-1050(1139)
252 1ya0_A SMG-7 transcript varian 91.5 0.74 2.5E-05 51.6 10.8 79 78-156 153-231 (497)
253 4b4t_S RPN3, 26S proteasome re 91.3 0.71 2.4E-05 51.4 10.1 136 381-519 137-299 (523)
254 2ff4_A Probable regulatory pro 90.8 2.2 7.4E-05 46.4 13.6 65 112-176 172-236 (388)
255 4ady_A RPN2, 26S proteasome re 90.6 3.3 0.00011 49.7 15.6 129 80-217 458-588 (963)
256 3spa_A Mtrpol, DNA-directed RN 90.5 2 7E-05 51.7 13.6 98 44-141 128-231 (1134)
257 4b4t_R RPN7, 26S proteasome re 90.5 1.3 4.4E-05 49.0 11.5 90 382-471 133-231 (429)
258 1ya0_A SMG-7 transcript varian 90.2 1.2 4.2E-05 49.8 11.0 79 45-123 154-232 (497)
259 4ady_A RPN2, 26S proteasome re 88.6 48 0.0017 39.8 30.6 96 382-479 562-660 (963)
260 4b4t_R RPN7, 26S proteasome re 88.1 5.5 0.00019 43.8 14.4 104 111-218 131-237 (429)
261 4fhn_B Nucleoporin NUP120; pro 86.8 5.4 0.00019 50.0 14.9 141 17-162 820-988 (1139)
262 3lpz_A GET4 (YOR164C homolog); 86.1 36 0.0012 35.6 25.9 170 6-175 9-217 (336)
263 4b4t_S RPN3, 26S proteasome re 81.6 3 0.0001 46.3 8.1 67 190-256 232-303 (523)
264 2w2u_A Hypothetical P60 katani 79.2 3.2 0.00011 33.7 5.5 37 426-462 31-77 (83)
265 1wfd_A Hypothetical protein 15 74.2 3.6 0.00012 34.3 4.6 19 449-467 60-78 (93)
266 2v6y_A AAA family ATPase, P60 72.4 8 0.00027 31.3 6.2 36 426-461 23-68 (83)
267 2v6x_A Vacuolar protein sortin 66.6 6.7 0.00023 31.9 4.6 40 426-465 25-74 (85)
268 3lvg_A Clathrin heavy chain 1; 64.8 0.0043 1.5E-07 67.5 -19.1 343 82-478 149-510 (624)
269 4a5x_A MITD1, MIT domain-conta 62.9 29 0.00099 28.2 7.7 17 449-465 61-77 (86)
270 2cpt_A SKD1 protein, vacuolar 61.9 13 0.00044 32.4 5.7 41 426-466 30-81 (117)
271 3iqu_A 14-3-3 protein sigma; s 57.7 1.5E+02 0.005 29.1 13.5 62 343-407 142-203 (236)
272 4gq2_M Nucleoporin NUP120; bet 54.2 80 0.0027 38.4 13.2 111 17-145 818-932 (950)
273 2npm_A 14-3-3 domain containin 54.1 1.8E+02 0.0061 29.0 13.3 59 346-408 168-226 (260)
274 1o9d_A 14-3-3-like protein C; 50.8 1.4E+02 0.0048 29.7 11.9 30 190-219 9-38 (260)
275 3t5v_B Nuclear mRNA export pro 49.6 73 0.0025 34.9 10.6 97 125-221 140-253 (455)
276 4gq2_M Nucleoporin NUP120; bet 49.0 1E+02 0.0035 37.5 12.9 52 49-104 816-867 (950)
277 2ijq_A Hypothetical protein; s 46.2 67 0.0023 29.5 8.0 31 11-41 34-64 (161)
278 2wpv_A GET4, UPF0363 protein Y 44.5 2.8E+02 0.0095 28.5 24.7 131 4-134 8-157 (312)
279 3ubw_A 14-3-3E, 14-3-3 protein 44.5 1.6E+02 0.0056 29.2 11.1 31 190-220 32-62 (261)
280 3lpz_A GET4 (YOR164C homolog); 43.8 3E+02 0.01 28.6 24.1 121 75-201 134-294 (336)
281 2br9_A 14-3-3E, 14-3-3 protein 41.3 1.6E+02 0.0055 28.8 10.5 31 190-220 6-36 (234)
282 3esl_A Checkpoint serine/threo 40.3 2.5E+02 0.0086 26.7 13.6 68 378-446 78-147 (202)
283 2v6x_A Vacuolar protein sortin 37.8 34 0.0012 27.6 4.2 31 7-37 11-41 (85)
284 1wy6_A Hypothetical protein ST 37.8 2.2E+02 0.0076 25.4 14.9 59 195-253 97-155 (172)
285 3t5x_A PCI domain-containing p 36.7 67 0.0023 30.8 6.9 32 382-413 16-47 (203)
286 2wvi_A Mitotic checkpoint seri 36.7 2.5E+02 0.0086 25.7 11.4 50 398-447 78-129 (164)
287 4b4t_O 26S proteasome regulato 36.0 4.2E+02 0.014 28.1 16.4 88 387-474 83-195 (393)
288 3t5v_B Nuclear mRNA export pro 35.5 1.8E+02 0.006 31.8 10.8 63 385-447 181-254 (455)
289 4a1g_A Mitotic checkpoint seri 35.2 2.4E+02 0.0083 25.5 9.9 51 397-447 82-134 (152)
290 2w2u_A Hypothetical P60 katani 32.2 1.5E+02 0.0053 23.6 7.2 30 8-37 18-47 (83)
291 2cwy_A Hypothetical protein TT 32.1 1E+02 0.0034 25.4 6.2 56 13-71 5-67 (94)
292 4b4t_O 26S proteasome regulato 30.9 3E+02 0.01 29.3 11.7 96 118-215 83-195 (393)
293 3ax2_A Mitochondrial import re 30.6 1.3E+02 0.0046 23.4 6.3 40 227-266 21-60 (73)
294 2wpv_A GET4, UPF0363 protein Y 29.7 4.7E+02 0.016 26.7 18.4 86 75-175 132-218 (312)
295 2v6y_A AAA family ATPase, P60 29.0 1.9E+02 0.0065 23.0 7.3 31 7-37 9-39 (83)
296 3u84_A Menin; MLL, JUND, ledgf 28.9 4.1E+02 0.014 28.3 11.3 134 378-554 262-421 (550)
297 4a5x_A MITD1, MIT domain-conta 28.8 51 0.0018 26.7 3.8 30 8-37 15-44 (86)
298 2ijq_A Hypothetical protein; s 28.8 2E+02 0.007 26.3 8.3 59 47-105 36-103 (161)
299 3ax2_A Mitochondrial import re 28.7 1.2E+02 0.0039 23.8 5.6 30 82-111 22-51 (73)
300 2ymb_A MITD1, MIT domain-conta 28.6 12 0.00041 37.3 0.0 58 396-468 20-87 (257)
301 2qx5_A Nucleoporin NIC96; mRNA 28.5 6.2E+02 0.021 29.0 14.3 221 51-291 302-564 (661)
302 4gq4_A Menin; tumor suppressor 27.9 4.5E+02 0.015 28.0 11.5 135 378-553 247-393 (489)
303 4aez_C MAD3, mitotic spindle c 27.3 3.5E+02 0.012 26.2 10.0 99 350-460 96-197 (223)
304 2vkj_A TM1634; membrane protei 26.4 1.2E+02 0.0041 24.4 5.3 29 9-37 53-81 (106)
305 3t5x_A PCI domain-containing p 26.4 1E+02 0.0036 29.5 6.3 32 79-110 16-47 (203)
306 2dl1_A Spartin; SPG20, MIT, st 26.1 61 0.0021 27.8 3.9 34 394-442 17-50 (116)
307 2cfu_A SDSA1; SDS-hydrolase, l 26.0 75 0.0026 36.8 6.1 47 11-57 451-497 (658)
308 2crb_A Nuclear receptor bindin 25.7 98 0.0034 25.3 4.8 28 223-250 15-42 (97)
309 2cpt_A SKD1 protein, vacuolar 25.0 69 0.0024 27.7 4.2 30 8-37 17-46 (117)
310 3lvg_A Clathrin heavy chain 1; 24.7 0.17 5.8E-06 55.3 -15.0 180 11-210 146-325 (624)
311 2crb_A Nuclear receptor bindin 22.9 1.7E+02 0.0058 23.9 5.6 25 382-406 17-41 (97)
312 1o9d_A 14-3-3-like protein C; 21.5 6E+02 0.021 25.1 14.8 48 240-291 152-204 (260)
313 3lxu_X Tripeptidyl-peptidase 2 20.6 7.6E+02 0.026 30.9 13.5 46 385-431 1289-1334(1354)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-36 Score=342.23 Aligned_cols=385 Identities=16% Similarity=0.139 Sum_probs=339.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
+..|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|..++++++..+|.+..+|..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYE 172 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 172 (900)
+++|+.+|+++++++|++..++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+ ..|.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK---ACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 4555
Q ss_pred hhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 173 GTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
+++... |....++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|++++..
T Consensus 160 ~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 160 KAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566554 5667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCCh
Q 045355 253 NPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPS 332 (900)
Q Consensus 253 ~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~ 332 (900)
+|++...+..++.++ ...|++++|+..|++++...|....
T Consensus 233 ~p~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~al~~~p~~~~-------------------------------- 272 (388)
T 1w3b_A 233 SPNHAVVHGNLACVY--------YEQGLIDLAIDTYRRAIELQPHFPD-------------------------------- 272 (388)
T ss_dssp CTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHTCSSCHH--------------------------------
T ss_pred CcCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhCCCCHH--------------------------------
Confidence 999999999999998 5678999999999988776654331
Q ss_pred hhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 045355 333 LFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT 412 (900)
Q Consensus 333 ~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~ 412 (900)
+++.+|.++...|++++|+..|+++++..|.
T Consensus 273 -------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 273 -------------------------------------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 4567777888888888888888888888888
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHH
Q 045355 413 VIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMW 491 (900)
Q Consensus 413 ~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w 491 (900)
++.++..+|.++...|++++|+..|+++++++|++......++..+.+.|++++|++.+....+ ++.. . .
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~--------~ 374 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-A--------D 374 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-H--------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-H--------H
Confidence 8888888888888888888888888888888888877777777788888888888887776665 2221 1 1
Q ss_pred HHHHHHHHHHHcCC
Q 045355 492 YELASGESYFRQGD 505 (900)
Q Consensus 492 ~~~~lg~~y~r~g~ 505 (900)
....+|.++..+|+
T Consensus 375 a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHhHHHHHHHccC
Confidence 23366777776653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2e-34 Score=323.57 Aligned_cols=358 Identities=17% Similarity=0.189 Sum_probs=331.1
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|.....++..+..++..|++++|...++++++.+|.++.++..+|.++...|++++|+..|++++..+|++..+|..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 34445677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 245 (900)
..|.+++..+ |....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..
T Consensus 190 ---~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 190 ---HHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp ---HHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---HHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5566666655 556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhh
Q 045355 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPL 325 (900)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~ 325 (900)
|+++++.+|+++..+..++.++ ...|++++|+..|+++++..|.+..
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~al~~~p~~~~------------------------- 306 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANAL--------KEKGSVAEAEDCYNTALRLCPTHAD------------------------- 306 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHH--------HHHSCHHHHHHHHHHHHHHCTTCHH-------------------------
T ss_pred HHHHHhhCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhCcccHH-------------------------
Confidence 9999999999999999999998 5578899999999988776654321
Q ss_pred hhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 045355 326 LTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDE 405 (900)
Q Consensus 326 l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~ 405 (900)
++..+|.++...|++++|+..+++
T Consensus 307 --------------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 307 --------------------------------------------------------SLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp --------------------------------------------------------HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcC
Q 045355 406 AIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQAD 462 (900)
Q Consensus 406 al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g 462 (900)
+++..|+++.++..+|.++...|++++|+..|+++++++|++......++..+...|
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999999999999999999999999877777777766554
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-34 Score=338.70 Aligned_cols=491 Identities=12% Similarity=0.045 Sum_probs=401.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...+...+..+...|++++|+..|++++...|+ ..+++.+|.++...|++++|+..|++++.. |.+..++..+|.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence 345567777888999999999999999999995 478889999999999999999999998765 667889999999999
Q ss_pred hccCHHHHHHHHHHHHhhC----------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRID----------------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
..|++++|+..|++..... |.+..+|..+|.+|.+.|++++|+..|+++++.+|++..++..++
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 9999999999998632222 224889999999999999999999999999999999999999998
Q ss_pred HHHHHcCCHHHHHHHHHH--HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 045355 153 VSHHLNSNGSKAVEILEA--YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEV 230 (900)
Q Consensus 153 ~~~~~~g~~~~A~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la 230 (900)
.++...+....+.. .. +......++ .....++..++..|...|++++|+..|++++.. |.+..++..+|
T Consensus 242 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 312 (597)
T 2xpi_A 242 SNHLLTADEEWDLV--LKLNYSTYSKEDA------AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKA 312 (597)
T ss_dssp HTTCSCHHHHHHHH--HHSCTHHHHGGGH------HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHH
T ss_pred HhhcccchhHHHHH--HhcCCcccccchH------HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHH
Confidence 87766554443321 11 222222111 122334555677888999999999999999887 67789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhccc
Q 045355 231 SLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQ 310 (900)
Q Consensus 231 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~ 310 (900)
.++...|++++|+..|+++++.+|++...+..++.++ ...|++++|..+++++....|.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~~~~~----------- 373 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL--------HESGEKNKLYLISNDLVDRHPEKA----------- 373 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH--------HHHTCHHHHHHHHHHHHHHCTTSH-----------
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHhhCcccH-----------
Confidence 9999999999999999999999999999999999888 457888899888888765544321
Q ss_pred chHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHH
Q 045355 311 GEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHY 390 (900)
Q Consensus 311 ~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y 390 (900)
.+++.+|.+|
T Consensus 374 ----------------------------------------------------------------------~~~~~l~~~~ 383 (597)
T 2xpi_A 374 ----------------------------------------------------------------------VTWLAVGIYY 383 (597)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 1567889999
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHH
Q 045355 391 DRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 391 ~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
...|++++|+++|+++++..|.++.+|..+|.+|...|++++|++.|+++++.+|.+......++..+.+.|++++|++.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHh
Q 045355 471 AALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKF 549 (900)
Q Consensus 471 ~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~ 549 (900)
+....+ .+. .. .....+|.+|.+.|++++|++.|+++.+..++...+.-.
T Consensus 464 ~~~~~~~~~~-~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-------------------- 514 (597)
T 2xpi_A 464 LQSSYALFQY-DP--------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-------------------- 514 (597)
T ss_dssp HHHHHHHCCC-CH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG--------------------
T ss_pred HHHHHHhCCC-Ch--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh--------------------
Confidence 987766 322 11 123489999999999999999999888765432111000
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCC
Q 045355 550 QDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKS 629 (900)
Q Consensus 550 ~d~l~~~~~~~~a~~~~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~ 629 (900)
+..+....+.+|
T Consensus 515 ---------~~~~~~~l~~~~----------------------------------------------------------- 526 (597)
T 2xpi_A 515 ---------WAATWANLGHAY----------------------------------------------------------- 526 (597)
T ss_dssp ---------GHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ---------HHHHHHHHHHHH-----------------------------------------------------------
Confidence 011111122222
Q ss_pred CCCCCCCCCCCCchhhhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCCchhHH
Q 045355 630 GKRHVKPVDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHR 709 (900)
Q Consensus 630 ~~~~~~~~d~d~~~~~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~~~~~~ 709 (900)
...+.+++|.++++.+.+..|++..+|...+.+|.+.|++..|++.++++++++|+++....
T Consensus 527 ------------------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 527 ------------------RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------------HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 12346889999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHH
Q 045355 710 CLIRF 714 (900)
Q Consensus 710 ~~~~~ 714 (900)
.+..+
T Consensus 589 ~l~~~ 593 (597)
T 2xpi_A 589 LLKRA 593 (597)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-32 Score=324.69 Aligned_cols=422 Identities=13% Similarity=0.080 Sum_probs=365.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKND--------------- 73 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------- 73 (900)
...++..+..++..|++++|+..|++++.. |.++.++..+|.+|...|++++|+..|++.....
T Consensus 117 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 117 PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 356778899999999999999999998764 7789999999999999999999999999643333
Q ss_pred -CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH---------------------------------
Q 045355 74 -IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL--------------------------------- 119 (900)
Q Consensus 74 -p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~--------------------------------- 119 (900)
+.+..+|+.+|.+|...|++++|+.+|+++++.+|++..++..++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 3358899999999999999999999999999999999988777654
Q ss_pred -----HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 120 -----LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 120 -----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
.|...|++++|+..+++++.. |.+...|..++.++...|++++|+.+++. ++..+ |....++..
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~-------~~~~~~~~~ 344 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTK---ILEID-------PYNLDVYPL 344 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHC-------TTCCTTHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHH---HHHcC-------cccHHHHHH
Confidence 344679999999999999887 78899999999999999999999955554 44444 334467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCC
Q 045355 195 KISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNG 274 (900)
Q Consensus 195 la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~ 274 (900)
++.++...|++++|+..+++++...|++..++..+|.+|.+.|++++|+.+|+++++.+|++...|..++.++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------- 417 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF------- 417 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCcch-hhhhchhhcccchHHHHHHHHhHHhh-hhcCCChhhhchhhhhcCCChHHHHHH
Q 045355 275 NYSSGEIDELDALYKSLAQQYTWSS-AVKRIPLDFLQGEKFREAAFNYVRPL-LTKGVPSLFSDLSPLYDQPGKADILEQ 352 (900)
Q Consensus 275 ~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~l~l~~~~~~~~~~a~~~~~~~~-l~~~~p~~~~~L~~ly~~~~~~~~~~~ 352 (900)
...|++++|+.+|+++....|.+. .+..++..+...++++++...|.+.. ..+..+..+..++.+|...++.+.+.+
T Consensus 418 -~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 418 -AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp -HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 557999999999999999999665 45667788888999999999998887 455678889999999999999888777
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 045355 353 LILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAA 432 (900)
Q Consensus 353 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~e 432 (900)
.++......... ...|.....++..+|.+|...|++++|+..|+++++..|+++.+|..+|.+|...|++++
T Consensus 497 ~~~~~~~~~~~~--------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 497 HFQNALLLVKKT--------QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHHHHHS--------CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhcc--------ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 777765543321 123443344789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHH
Q 045355 433 AATLADEARCMDLADRYVNSECVKRM 458 (900)
Q Consensus 433 A~~~~~~al~ldp~d~~l~~~~a~~~ 458 (900)
|.+.|+++++++|+++.....++..+
T Consensus 569 A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 569 AITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999987666665543
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3.2e-31 Score=310.63 Aligned_cols=411 Identities=11% Similarity=0.027 Sum_probs=328.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++..+|++..+|..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------------
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR----------------------- 145 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------- 145 (900)
..|++++|+..|+ ++..+|+....+. ..+...+....|+..+++++...|...
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999995 8888888766543 245556667788888888876543221
Q ss_pred --------------HHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC
Q 045355 146 --------------MNWIGFAVSH--------HLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG 203 (900)
Q Consensus 146 --------------~~~~~la~~~--------~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 203 (900)
..+..++..+ ...|++++|+ ..+.+++...|...........++..+|.++...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~---~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST---DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH---HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1222222222 2235778888 45555666554322222334567889999999999
Q ss_pred CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHH
Q 045355 204 SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDE 283 (900)
Q Consensus 204 ~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 283 (900)
++++|+..+++++...|+ ..++..+|.++...|++++|+..|+++++.+|+++..+..++.++ ...|++++
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~ 328 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY--------FILQDYKN 328 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTCHHH
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH--------HhcCCHHH
Confidence 999999999999999999 899999999999999999999999999999999999999999998 56788999
Q ss_pred HHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcc
Q 045355 284 LDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGT 363 (900)
Q Consensus 284 A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~ 363 (900)
|+..|++++...|...
T Consensus 329 A~~~~~~a~~~~~~~~---------------------------------------------------------------- 344 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENV---------------------------------------------------------------- 344 (537)
T ss_dssp HHHHHHHHHHHCTTCS----------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCH----------------------------------------------------------------
Confidence 9999988876554321
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045355 364 TGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM 443 (900)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l 443 (900)
.+++.+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..|++++++
T Consensus 345 -----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 345 -----------------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp -----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 157789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhH------HHHHHHHHHHc----------CChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCCh
Q 045355 444 DLADRYV------NSECVKRMLQA----------DQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDL 506 (900)
Q Consensus 444 dp~d~~l------~~~~a~~~l~~----------g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~ 506 (900)
+|.+... ....+..+.+. |++++|+..+....+ ++... +....+|.+|.++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE---------QAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhccH
Confidence 8877522 23445666777 999999999988776 33211 2345899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 045355 507 GRALKKFLAVEKHYADITE 525 (900)
Q Consensus 507 ~~Alk~~~~v~~~~~~~~~ 525 (900)
++|++.|+++.+..+...+
T Consensus 479 ~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHHhCCCcHH
Confidence 9999999999998876544
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=304.06 Aligned_cols=384 Identities=11% Similarity=0.005 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..+|..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCc---------------------------------------------------------
Q 045355 88 RSDREYREAIKCYRNALRIDPDN--------------------------------------------------------- 110 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~--------------------------------------------------------- 110 (900)
...|++++|+..|++++..+|.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999999988744
Q ss_pred ----------------------HHHHHHHHHHHHH---hcCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHH
Q 045355 111 ----------------------IEILRDLSLLQAQ---MRDLTGFVETRQQLLT-----L--K-------PNHRMNWIGF 151 (900)
Q Consensus 111 ----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~l 151 (900)
..++..+|.++.. .|++++|+..+++++. + . |.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 3444444444443 5555555555555555 3 2 2233455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 045355 152 AVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVS 231 (900)
Q Consensus 152 a~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~ 231 (900)
|.++...|++++|+. .+.+++... |. ..++..+|.++...|++++|+..+++++...|++..++..+|.
T Consensus 244 ~~~~~~~~~~~~A~~---~~~~~l~~~-------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHE---DIKKAIELF-------PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHSSCHHHHHH---HHHHHHHHC-------CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHH---HHHHHHhhC-------cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 555555555555552 233333332 12 3555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccc
Q 045355 232 LLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQG 311 (900)
Q Consensus 232 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~ 311 (900)
++...|++++|+..|+++++.+|++...+..++.++ ...|++++|+..|++++...|.+
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~~~~~~~~~------------- 371 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA--------YRENKFDDCETLFSEAKRKFPEA------------- 371 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT--------TTTTCHHHHHHHHHHHHHHSTTC-------------
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHcccC-------------
Confidence 555555555555555555555555555555555555 44555555555555555555543
Q ss_pred hHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 045355 312 EKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYD 391 (900)
Q Consensus 312 ~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~ 391 (900)
+..+..++.+|...++.+.+...+..... ..+..+. ......+++.+|.++.
T Consensus 372 -------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~------~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 372 -------------------PEVPNFFAEILTDKNDFDKALKQYDLAIE---LENKLDG------IYVGIAPLVGKATLLT 423 (514)
T ss_dssp -------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHTSSS------CSSCSHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hhhccch------HHHHHHHHHHHHHHHh
Confidence 34444445555555554444444433322 2222111 0000126789999999
Q ss_pred H---hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHH
Q 045355 392 R---RGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNS 452 (900)
Q Consensus 392 ~---~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~ 452 (900)
. .|++++|+..+++++...|+++.++..+|.++...|++++|...|+++++++|+++....
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999885443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.4e-30 Score=298.13 Aligned_cols=338 Identities=11% Similarity=0.079 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
...+...+.+++..+|+++.++..+|..+...|++++|+.+|++++..+|.+..+|+.+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 045355 105 RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR---MNWIGF------------AVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~l~ 169 (900)
+.+|++..++..+|.++...|++++|+..|++++...|++. ..|..+ |.++...|++++|+..+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~- 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL- 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 99999999999999999999999999999999999999888 776655 66699999999999554
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
.+++... |....++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++
T Consensus 167 --~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 167 --DKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp --HHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455544 4556899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHH------------HHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHH
Q 045355 250 LSMNPDNYSYYEGL------------QKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREA 317 (900)
Q Consensus 250 l~~~p~~~~~~~~l------------~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a 317 (900)
+..+|++...+..+ +.++ ...|++++|+..|++++...|.+..
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~----------------- 292 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEEL--------IRDGRYTDATSKYESVMKTEPSIAE----------------- 292 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHHHCCSSHH-----------------
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhcCCcchH-----------------
Confidence 99999999887766 4443 3356666666666666555544321
Q ss_pred HHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 318 AFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 318 ~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
....+++.+|.++...|+++
T Consensus 293 ------------------------------------------------------------~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 293 ------------------------------------------------------------YTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHTTTCHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHCCCHH
Confidence 11126788999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHH
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKR 457 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~ 457 (900)
+|+..++++++..|+++.++..+|.++...|++++|+..|+++++++|+++.+...++..
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998666666543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.3e-29 Score=279.67 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..+|..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDP---DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
..|++++|+..|+++++.+| ++..++..++.++.. ..+..+|.++...|++++|+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------QRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH----------------------HHHHHHHHHHHHccCHHHHH
Confidence 88888888888888888888 777777777543221 12334456666666666666
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 245 (900)
..+ .+++... |....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..
T Consensus 141 ~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 141 TFL---DKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHH---HHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHH---HHHHHhC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333 3333333 333456666666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHH------------HHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchH
Q 045355 246 YRALLSMNPDNYSYYEGL------------QKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEK 313 (900)
Q Consensus 246 ~~~al~~~p~~~~~~~~l------------~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~ 313 (900)
|+++++.+|++...+..+ +.++ ...|++++|+..|++++...|.+...
T Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~A~~~~~~~~~~~~~~~~~------------ 270 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL--------IRDGRYTDATSKYESVMKTEPSVAEY------------ 270 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCCSSHHH------------
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhcCCCchHH------------
Confidence 777777777776654433 3333 33566677777766666655543211
Q ss_pred HHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 045355 314 FREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRR 393 (900)
Q Consensus 314 ~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~ 393 (900)
...++..+|.++...
T Consensus 271 -----------------------------------------------------------------~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 271 -----------------------------------------------------------------TVRSKERICHCFSKD 285 (359)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHc
Confidence 011467889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045355 394 GQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRML 459 (900)
Q Consensus 394 g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l 459 (900)
|++++|+..++++++.+|+++.++..+|.++...|++++|..+|+++++++|++..+...+.....
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877666665543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-30 Score=298.88 Aligned_cols=383 Identities=12% Similarity=0.035 Sum_probs=325.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
.++++..+|.++...|++++|+..|++++..+| ++.+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999 5889999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCC---------------------------------------------------------
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNH--------------------------------------------------------- 144 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~--------------------------------------------------------- 144 (900)
..+|++++|+..|++++...|.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999999887632
Q ss_pred ----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh----hccCCCCCcchhchhHHHHHH
Q 045355 145 ----------------------RMNWIGFAVSHHL---NSNGSKAVEILEAYEGT----LEDDYPPDNERCEHGEMLLYK 195 (900)
Q Consensus 145 ----------------------~~~~~~la~~~~~---~g~~~~A~~~l~~~~~~----l~~~~~~~~~~~~~~~~~~~l 195 (900)
...++.+|.++.. .|++++|+..++..... +...+......+....++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 5667777887776 89999999665554442 111222111126678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCC
Q 045355 196 ISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 196 a~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~ 275 (900)
|.++...|++++|+..+++++...|+ ..++..+|.++...|++++|+..|++++..+|++...+..++.++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------- 314 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN-------- 314 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH--------
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999988
Q ss_pred CCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHH
Q 045355 276 YSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLIL 355 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~ 355 (900)
...|++++|+..|++++...|.+.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------------------------- 338 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENI-------------------------------------------------------- 338 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCS--------------------------------------------------------
T ss_pred HHhCCHHHHHHHHHHHHHhChhhH--------------------------------------------------------
Confidence 557888999999988876655321
Q ss_pred HHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 045355 356 ELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAAT 435 (900)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~ 435 (900)
.+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 339 -------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 339 -------------------------FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp -------------------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 0466788888888999999999999999888888889999999999999999999
Q ss_pred HHHHHHhcCcCChh------HHHHHHHHHHH---cCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCC
Q 045355 436 LADEARCMDLADRY------VNSECVKRMLQ---ADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGD 505 (900)
Q Consensus 436 ~~~~al~ldp~d~~------l~~~~a~~~l~---~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~ 505 (900)
.|++++.++|.++. .....+..+.. .|++++|++.+..... .+.. ......+|.+|.+.|+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS---------EQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhcC
Confidence 99999888888754 77777888888 8889999888877665 3221 1233478999999999
Q ss_pred hHHHHHHHHHHHHHhhhhh
Q 045355 506 LGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 506 ~~~Alk~~~~v~~~~~~~~ 524 (900)
+++|++.|+++.+..++..
T Consensus 465 ~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 465 IDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhccccH
Confidence 9999999999988876543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=2.2e-29 Score=287.98 Aligned_cols=344 Identities=15% Similarity=0.084 Sum_probs=300.7
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
-|.....++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 35566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcH---HHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNI---EILRDL------------SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
.+|...|++++|+.+|+++++.+|++. .++..+ |.++...|++++|+..+++++...|.+..++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999988 776655 66699999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHH
Q 045355 150 GFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQE 229 (900)
Q Consensus 150 ~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~l 229 (900)
.+|.++...|++++|+..+.. ++... |....++..+|.++...|++++|+..+++++...|++...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~---~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKA---ASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHH---HHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH---HHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 999999999999999955544 44433 45568999999999999999999999999999999988877666
Q ss_pred ------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 230 ------------VSLLVKIGRLEEAAELYRALLSMNPDNYS----YYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 230 ------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
|.++...|++++|+..|+++++..|+++. .+..++.++ ...|++++|+..+++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF--------SKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999854 677777777 567889999999988876
Q ss_pred hcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 045355 294 QYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEK 373 (900)
Q Consensus 294 ~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 373 (900)
..|.+.
T Consensus 324 ~~p~~~-------------------------------------------------------------------------- 329 (450)
T 2y4t_A 324 MEPDNV-------------------------------------------------------------------------- 329 (450)
T ss_dssp HCTTCH--------------------------------------------------------------------------
T ss_pred hCcccH--------------------------------------------------------------------------
Confidence 655432
Q ss_pred CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH------------HcC-----CHHHHHHH
Q 045355 374 EPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILK------------HAG-----DLAAAATL 436 (900)
Q Consensus 374 ~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~------------~~G-----~~~eA~~~ 436 (900)
.+++.+|.++...|++++|+..|+++++.+|+++.++..++.+.. ..| +.+++.+.
T Consensus 330 -------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 330 -------NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 157889999999999999999999999999999999999996644 334 44455555
Q ss_pred HHH-HHhcCcCC
Q 045355 437 ADE-ARCMDLAD 447 (900)
Q Consensus 437 ~~~-al~ldp~d 447 (900)
|++ +++.+|++
T Consensus 403 y~~~~l~~~pd~ 414 (450)
T 2y4t_A 403 YRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHSCGGG
T ss_pred HHHHHHHhCCCC
Confidence 554 55555543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=9.8e-28 Score=264.47 Aligned_cols=326 Identities=13% Similarity=0.075 Sum_probs=292.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
+++.+..+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHH
Q 045355 122 AQMRDLTGFVETRQQLLTLKP---NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISL 198 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 198 (900)
...|++++|+..+++++...| ++...+..++.++. ...+..+|.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~a~~ 129 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE--------------------------------MQRLRSQALD 129 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH--------------------------------HHHHHHHHHH
Confidence 999999999999999999999 88887777765432 1345567889
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCC
Q 045355 199 LEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSS 278 (900)
Q Consensus 199 ~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~ 278 (900)
+...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|+++..+..++.++ ...
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~--------~~~ 201 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY--------YQL 201 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH--------HHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 567
Q ss_pred CcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHH
Q 045355 279 GEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELE 358 (900)
Q Consensus 279 ~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~ 358 (900)
|++++|...|++++...|......... .. +..
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~-~~~-- 233 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHY---------------------------------------------KQ-VKK-- 233 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHH---------------------------------------------HH-HHH--
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHH---------------------------------------------HH-HHH--
Confidence 999999999999999888766421000 00 000
Q ss_pred HhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchH----HHHHHHHHHHHcCCHHHHH
Q 045355 359 HSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVID----LYSVKSRILKHAGDLAAAA 434 (900)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~----~~~~la~i~~~~G~~~eA~ 434 (900)
......+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+
T Consensus 234 ---------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 234 ---------------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 114567889999999999999999999999999874 4677999999999999999
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 435 TLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 435 ~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
..|+++++++|.++.+....+..+.+.|++++|.+.+....+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998899999999999999999999988877
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=7.4e-28 Score=281.94 Aligned_cols=383 Identities=14% Similarity=0.062 Sum_probs=294.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
.++.+..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCC---c---------------
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPD---N--------------- 183 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~---~--------------- 183 (900)
...|++++|+..|+ .+...|+....+.. .+...+....|+.. +.+.+...+... .
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~a~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNLNKQAMKV---LNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHH---HHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHHHHHHHHH---HHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999996 88888887665432 33344455666643 333333211100 0
Q ss_pred ------------chhchhHHHHHHH--------HHHHHcCCHHHHHHHHHHHhhhcCCHHH-------HHHHHHHHHHHc
Q 045355 184 ------------ERCEHGEMLLYKI--------SLLEECGSFERALAEMHKKESKIVDKLA-------YKEQEVSLLVKI 236 (900)
Q Consensus 184 ------------~~~~~~~~~~~la--------~~~~~~g~~~~Al~~l~~al~~~p~~~~-------~~~~la~~~~~~ 236 (900)
..+........++ ......|++++|+..++++++..|++.. ++..+|.++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 0011111222222 2233345788888888888888887643 567777888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHH
Q 045355 237 GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFRE 316 (900)
Q Consensus 237 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~ 316 (900)
|++++|+..|+++++.+|+ ...+..++.++ ...|++++|+..|++++...|.+.
T Consensus 257 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~--------~~~~~~~~A~~~~~~~~~~~~~~~----------------- 310 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPT-PNSYIFLALTL--------ADKENSQEFFKFFQKAVDLNPEYP----------------- 310 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHT--------CCSSCCHHHHHHHHHHHHHCTTCH-----------------
T ss_pred ccHHHHHHHHHHHHhcCCC-chHHHHHHHHH--------HHhcCHHHHHHHHHHHhccCCCCH-----------------
Confidence 8888888888888888888 88888888887 667888888888888766555322
Q ss_pred HHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCH
Q 045355 317 AAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQY 396 (900)
Q Consensus 317 a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~ 396 (900)
.+++.+|.++...|++
T Consensus 311 ----------------------------------------------------------------~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 311 ----------------------------------------------------------------PTYYHRGQMYFILQDY 326 (537)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHTTCH
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHhcCCH
Confidence 1578899999999999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 397 DVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 397 ~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.+..+....+..+...|++++|++.+....+
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999877665
Q ss_pred -cCCcCCChhhhhHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHhhhhh
Q 045355 477 -DGDQHNNLHDMQCMWYELASGESYFRQ----------GDLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 477 -~~~~~~~l~~~q~~w~~~~lg~~y~r~----------g~~~~Alk~~~~v~~~~~~~~ 524 (900)
.+........ +-.....|.+|.+. |++++|+..|+++.+..++..
T Consensus 407 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 407 LEEVQEKIHVG---IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHCSSCSST---THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCCcchhhHHH---HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 2211111111 11124678899999 999999999999999876554
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=276.19 Aligned_cols=404 Identities=10% Similarity=0.004 Sum_probs=285.7
Q ss_pred hccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------CCCcHHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKK------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN---------DIKSHVCWHVYGLL 86 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~lg~~ 86 (900)
.++++.++..++..+.. .+..+..+..+|.++..+|++++|+++|++++++ +|....+|.++|.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 34555556555555442 2233567889999999999999999999999875 67778899999999
Q ss_pred HHhccCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRID--------PDNIEILRDLSLLQAQM--RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHH 156 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (900)
|..+|++++|+.+|++++++. +..+.++..+|.++... ++|++|+.+|+++++++|+++.++..++.++.
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999863 45678888888777665 57999999999999999999999999998876
Q ss_pred Hc---CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHH
Q 045355 157 LN---SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQE 229 (900)
Q Consensus 157 ~~---g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~l 229 (900)
.. ++.++|+ +.+.+++..+ |....++..+|..+.. .|++++|+..+++++...|+...++..+
T Consensus 184 ~l~~~~~~~~al---~~~~~al~l~-------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 184 RLDNWPPSQNAI---DPLRQAIRLN-------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHSCCCCCTH---HHHHHHHHHC-------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HhcCchHHHHHH---HHHHHHhhcC-------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 54 5666776 6677777766 4455677777766554 5678899999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcc
Q 045355 230 VSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFL 309 (900)
Q Consensus 230 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~ 309 (900)
|.+|...|++++|+..|+++++.+|++..++..+|.++. ....... .... ...
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~-------------~~~~~~~----~~~~-----~~~----- 306 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR-------------AKVFQVM----NLRE-----NGM----- 306 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-------------HHHHHHH----HC---------------
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH-------------HHHHHhh----hHHH-----HHH-----
Confidence 999999999999999999999999999999999998871 0000000 0000 000
Q ss_pred cchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHH
Q 045355 310 QGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQH 389 (900)
Q Consensus 310 ~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~ 389 (900)
...... ......++..+.+.+...+.... +++.+|.+
T Consensus 307 --~~~~~~-----------------------------~~~~~~A~~~~~~a~~~~~~~~~------------~~~~lg~~ 343 (472)
T 4g1t_A 307 --YGKRKL-----------------------------LELIGHAVAHLKKADEANDNLFR------------VCSILASL 343 (472)
T ss_dssp ---CHHHH-----------------------------HHHHHHHHHHHHHHHHHCTTTCC------------CHHHHHHH
T ss_pred --HHHHHH-----------------------------HhhHHHHHHHHHHHhhcCCchhh------------hhhhHHHH
Confidence 000000 01133444555555555555544 67899999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCchH---HHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChH
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPTVID---LYSVKSRIL-KHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVS 465 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~~~~---~~~~la~i~-~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~e 465 (900)
|...|++++|+.+|+++++..|+... ++..+|.++ ...|++++|+..|+++++++|.+..... ...
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~ 413 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKD 413 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHH
Confidence 99999999999999999999987654 466777654 5789999999999999999998763221 122
Q ss_pred HHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 045355 466 LAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADI 523 (900)
Q Consensus 466 eA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~ 523 (900)
.+.+++.......+... +....+|.+|..+|++++|++.|++++..-+..
T Consensus 414 ~l~~~~~~~l~~~p~~~--------~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADS--------EALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHHHHHCC-CT--------THHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33334443333222122 133489999999999999999999988765443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1e-26 Score=253.35 Aligned_cols=309 Identities=13% Similarity=0.015 Sum_probs=226.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 045355 32 ADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 32 ~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~ 111 (900)
....+...|+++..+..+|..++..|++++|+.++++++..+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 33455566777777888888888888888888888888888888887787788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhH
Q 045355 112 EILRDLSLLQAQMR-DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGE 190 (900)
Q Consensus 112 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~ 190 (900)
.++..+|.++...| ++++|+..+++++..+|.+..+|..+|.++...|++++|+. .+.+++... |....
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~a~~~~-------~~~~~ 160 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA---AYFTAAQLM-------KGCHL 160 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH---HHHHHHHHT-------TTCSH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH---HHHHHHHhc-------cccHH
Confidence 88888888888888 78888888888888888777777777777777777777773 333344433 22335
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccc
Q 045355 191 MLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLY 270 (900)
Q Consensus 191 ~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~ 270 (900)
.+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------- 226 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI-------------- 226 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT--------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc--------------
Confidence 566677777777777777777777777777777777777777777777777777766666543321
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHH
Q 045355 271 RDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADIL 350 (900)
Q Consensus 271 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~ 350 (900)
..
T Consensus 227 ----------------------------~~-------------------------------------------------- 228 (330)
T 3hym_B 227 ----------------------------GN-------------------------------------------------- 228 (330)
T ss_dssp ----------------------------SC--------------------------------------------------
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 045355 351 EQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDL 430 (900)
Q Consensus 351 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~ 430 (900)
. ..+.....+++.+|.+|...|++++|+.+++++++..|.++.++..+|.++...|++
T Consensus 229 ---------------------~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 229 ---------------------E-VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp ---------------------S-CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred ---------------------c-ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 0 000000116788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCChhHHHHHHHHH-HHcCCh
Q 045355 431 AAAATLADEARCMDLADRYVNSECVKRM-LQADQV 464 (900)
Q Consensus 431 ~eA~~~~~~al~ldp~d~~l~~~~a~~~-l~~g~~ 464 (900)
++|..+|+++++++|+++.....++..+ ...|+.
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999997777777766 445544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-26 Score=252.48 Aligned_cols=294 Identities=15% Similarity=0.083 Sum_probs=265.0
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
++.....++..+..++..|+|++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|.++.+|..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045355 85 LLYRSDR-EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 85 ~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (900)
.++...| ++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|++...+..+|.++...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc---------CCHHHHHHHHHHHHH
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI---------VDKLAYKEQEVSLLV 234 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~---------p~~~~~~~~la~~~~ 234 (900)
|+ ..+.+++... |....++..+|.++...|++++|+..+++++... |....++..+|.++.
T Consensus 178 A~---~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 178 AE---RFFSQALSIA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HH---HHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HH---HHHHHHHHhC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 99 5555566655 4556899999999999999999999999999886 666788999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHH
Q 045355 235 KIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKF 314 (900)
Q Consensus 235 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~ 314 (900)
..|++++|+..|+++++.+|++..
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~~~-------------------------------------------------------- 271 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQNAS-------------------------------------------------------- 271 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCSH--------------------------------------------------------
T ss_pred HhcCHHHHHHHHHHHHhhCccchH--------------------------------------------------------
Confidence 999999999999999887765422
Q ss_pred HHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q 045355 315 REAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRG 394 (900)
Q Consensus 315 ~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g 394 (900)
+++.+|.+|...|
T Consensus 272 -------------------------------------------------------------------~~~~la~~~~~~g 284 (330)
T 3hym_B 272 -------------------------------------------------------------------TYSAIGYIHSLMG 284 (330)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHT
T ss_pred -------------------------------------------------------------------HHHHHHHHHHHhc
Confidence 4566777888899
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHH-HHcCCHH
Q 045355 395 QYDVALSKIDEAIEHTPTVIDLYSVKSRIL-KHAGDLA 431 (900)
Q Consensus 395 ~~~~Al~~~~~al~~~P~~~~~~~~la~i~-~~~G~~~ 431 (900)
++++|+.+|+++++.+|+++.++..+|.++ ...|+.+
T Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999988 5666654
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=266.75 Aligned_cols=367 Identities=12% Similarity=0.004 Sum_probs=274.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CC
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKK---------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DI 74 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~---------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p 74 (900)
+-..|..++..|++++|++.|+++++. +|....++..+|.+|..+|++++|+.++++++.+ .+
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 345788899999999999999999885 6777889999999999999999999999999975 34
Q ss_pred CcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 75 KSHVCWHVYGLLYRSD--REYREAIKCYRNALRIDPDNIEILRDLSLLQAQ---MRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 75 ~~~~~~~~lg~~~~~~--g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
..+.++..+|.++... ++|++|+.+|+++++++|+++.++..++.++.. .+++++|++.++++++++|++..++.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 5567888888776654 579999999999999999999999999988665 46678899999999999999999999
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHH
Q 045355 150 GFAVSHHLN----SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAY 225 (900)
Q Consensus 150 ~la~~~~~~----g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~ 225 (900)
.++..+... |++++|. ..+.+++..+ |....++..+|.++...|++++|+..++++++..|++..+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~---~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGE---KLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp HHHHHHHHCC------CHHH---HHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH---HHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 998877665 5677888 4555566655 5566899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHH
Q 045355 226 KEQEVSLLVKI-------------------GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDA 286 (900)
Q Consensus 226 ~~~la~~~~~~-------------------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~ 286 (900)
+..+|.+|... +.+++|+..|+++++.+|.+...+..++.++ ...|++++|+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~--------~~~~~~~~A~~ 355 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH--------ALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH--------HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH--------HHhccHHHHHH
Confidence 99999988653 3468899999999999999999999999998 56899999999
Q ss_pred HHHHHHHhcCcchhhhhc----h-hhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhh
Q 045355 287 LYKSLAQQYTWSSAVKRI----P-LDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSI 361 (900)
Q Consensus 287 ~~~~~~~~~p~~~~~~~l----~-l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l 361 (900)
.|++++...|.......+ + +.....++++ +++..|.+++
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~Ai~~y~kal 399 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCED------------------------------------KAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHH------------------------------------HHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHH------------------------------------HHHHHHHHHH
Confidence 999999888765432111 1 1111223333 3444444445
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 362 GTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEAR 441 (900)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al 441 (900)
...+... . ..+....+..++++++..+|.++.+|..+|.+|...|++++|+++|++|+
T Consensus 400 ~i~~~~~-----------~-----------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 400 KINQKSR-----------E-----------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HSCCCCH-----------H-----------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred hcCcccH-----------H-----------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4432211 0 12233455677888999999999999999999999999999999999999
Q ss_pred hcCcCChhHHHHH
Q 045355 442 CMDLADRYVNSEC 454 (900)
Q Consensus 442 ~ldp~d~~l~~~~ 454 (900)
+++|.+|...+..
T Consensus 458 e~~~~~p~a~~~~ 470 (472)
T 4g1t_A 458 ESGSLIPSASSWN 470 (472)
T ss_dssp -------------
T ss_pred hcCCCCCcHhhcC
Confidence 9999888554443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=5.9e-26 Score=251.98 Aligned_cols=298 Identities=17% Similarity=0.113 Sum_probs=218.9
Q ss_pred HHhCCCHHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCH
Q 045355 53 LNCMDRKSEAYE-LVRLGVKNDIKSH----VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDL 127 (900)
Q Consensus 53 ~~~~g~~~eA~~-~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 127 (900)
+...|++++|+. .+++++...|.++ ..++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 444566667766 6666666665543 34666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcch---------hchhHHHHHHHHH
Q 045355 128 TGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNER---------CEHGEMLLYKISL 198 (900)
Q Consensus 128 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~---------~~~~~~~~~la~~ 198 (900)
++|+..+++++..+|++..++..+|.++...|++++|+..+ .+++...+...... ......+..++.+
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL---RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH---HHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 77777777777777777777777777777777777776333 33333332111100 0000112245556
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCC
Q 045355 199 LEECGSFERALAEMHKKESKIVD--KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNY 276 (900)
Q Consensus 199 ~~~~g~~~~Al~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~ 276 (900)
+ ..|++++|+..+++++...|+ ++.++..+|.++...|++++|+..|++++..+|+++..+..++.++ .
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~--------~ 262 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL--------A 262 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------H
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH--------H
Confidence 5 889999999999999999999 8999999999999999999999999999999999999999999998 5
Q ss_pred CCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHH
Q 045355 277 SSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILE 356 (900)
Q Consensus 277 ~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~ 356 (900)
..|++++|+..|++++...|...
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~--------------------------------------------------------- 285 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYI--------------------------------------------------------- 285 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH---------------------------------------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCcH---------------------------------------------------------
Confidence 67899999999988876655322
Q ss_pred HHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHH
Q 045355 357 LEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTV-----------IDLYSVKSRILK 425 (900)
Q Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~-----------~~~~~~la~i~~ 425 (900)
.+++.+|.+|...|++++|+.+|++++...|++ ..+|..+|.++.
T Consensus 286 ------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 286 ------------------------RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp ------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 157889999999999999999999999999988 899999999999
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 045355 426 HAGDLAAAATLADEARCM 443 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l 443 (900)
.+|++++|..+++++++.
T Consensus 342 ~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 342 MLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTCGGGHHHHHTTCHHH
T ss_pred HhCChHhHHHhHHHHHHH
Confidence 999999999999877654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=3e-25 Score=246.48 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..+|..+|.+|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDL----------SLLQAQMRDLTGFVETRQQLLTLKPN--HRMNWIGFAVSHH 156 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 156 (900)
..|++++|+.+|+++++++|++..++..+ |.++...|++++|+..+++++...|+ ++.++..+|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99999999999999999999877666554 99999999999999999999999999 8999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc
Q 045355 157 LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI 236 (900)
Q Consensus 157 ~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~ 236 (900)
..|++++|+ ..+.+++... |....++..+|.++...|++++|+..|++++...|++..++..+|.++...
T Consensus 225 ~~g~~~~A~---~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 225 LSGEFNRAI---DAFNAALTVR-------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHTCHHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHH---HHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 999999999 4555566554 455689999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHH
Q 045355 237 GRLEEAAELYRALLSMNPDN------------YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKS 290 (900)
Q Consensus 237 g~~~eA~~~~~~al~~~p~~------------~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~ 290 (900)
|++++|+..|+++++.+|++ ...|..++.++ ...|+.+.+.....+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL--------SLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH--------HHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH--------HHcCcHHHHHHHHHh
Confidence 99999999999999998873 56778888876 234566665555443
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=5.8e-25 Score=244.14 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR-KSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
...+...+..+...|++++|+..|+++++.+|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+|+.+|.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566778888889999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH-
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL-NSNGSKAV- 165 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~- 165 (900)
...|++++|+.+|+++++++|++..+|..+|.++..+|++++|+..|+++++++|++..+|+.+|.++.. .|.+++|+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 56557774
Q ss_pred -HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC-----
Q 045355 166 -EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG--SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG----- 237 (900)
Q Consensus 166 -~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g----- 237 (900)
..+..|.+++..+ |.+..+|++++.++...| ++++|++.+.++ +..|++..++..+|.+|..+|
T Consensus 257 ~~el~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 257 EREVQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 2246778888877 567789999999999988 699999999998 899999999999999999985
Q ss_pred ----CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHh
Q 045355 238 ----RLEEAAELYRAL-LSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 238 ----~~~eA~~~~~~a-l~~~p~~~~~~~~l~~~~ 267 (900)
.+++|+.+|+++ ++.+|....+|..++..+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 359999999999 999999999999998876
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=6.8e-23 Score=239.90 Aligned_cols=419 Identities=13% Similarity=0.078 Sum_probs=308.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL-LYR 88 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~-~~~ 88 (900)
...+..+. +...|++++|...|+++++.+|.++..|..++..+...|++++|...|++++...| +...|..++. +..
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 34445554 57789999999999999999999999999999999999999999999999999999 5778988885 445
Q ss_pred hccCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHhCCCCH--HHHHH
Q 045355 89 SDREYREAIK----CYRNALRI---DPDNIEILRDLSLLQAQ---------MRDLTGFVETRQQLLTLKPNHR--MNWIG 150 (900)
Q Consensus 89 ~~g~~~eAi~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~ 150 (900)
..|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|+..|++++. .|... ..|..
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~ 170 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRD 170 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHH
Confidence 6788877765 88888764 56778899888887765 7999999999999999 57543 34443
Q ss_pred HHHHH-------------HHcCCHHHHHHHHHHHH---hhhccCC---CCCcc--hhchhHHHHHHHHHHHHc----CCH
Q 045355 151 FAVSH-------------HLNSNGSKAVEILEAYE---GTLEDDY---PPDNE--RCEHGEMLLYKISLLEEC----GSF 205 (900)
Q Consensus 151 la~~~-------------~~~g~~~~A~~~l~~~~---~~l~~~~---~~~~~--~~~~~~~~~~la~~~~~~----g~~ 205 (900)
.+... ...+++..|..++.... ..+.... ++... .......|.......... ++.
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 33321 12456777775554432 2333211 11100 001124444443332221 232
Q ss_pred ----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 045355 206 ----ERALAEMHKKESKIVDKLAYKEQEVSLLVK-------IGRLE-------EAAELYRALLS-MNPDNYSYYEGLQKC 266 (900)
Q Consensus 206 ----~~Al~~l~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------eA~~~~~~al~-~~p~~~~~~~~l~~~ 266 (900)
..++..|++++...|.++.+|..+|.++.. .|+++ +|+.+|+++++ .+|++...|..++.+
T Consensus 251 ~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478899999999999999999999999987 79987 99999999998 799999999999998
Q ss_pred hcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCCh
Q 045355 267 LGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGK 346 (900)
Q Consensus 267 ~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~ 346 (900)
+ ...|++++|..+|+++++..|.+..
T Consensus 331 ~--------~~~g~~~~A~~~~~~al~~~p~~~~---------------------------------------------- 356 (530)
T 2ooe_A 331 E--------ESRMKYEKVHSIYNRLLAIEDIDPT---------------------------------------------- 356 (530)
T ss_dssp H--------HHTTCHHHHHHHHHHHHHSSSSCHH----------------------------------------------
T ss_pred H--------HhcCCHHHHHHHHHHHhCccccCch----------------------------------------------
Confidence 7 4578899999999998776554320
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHH-HH
Q 045355 347 ADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRI-LK 425 (900)
Q Consensus 347 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i-~~ 425 (900)
.+|..+|.++.+.|++++|+..|+++++..|.....+...+.+ +.
T Consensus 357 ----------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 357 ----------------------------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 0345666667777888888888888888877777777766665 34
Q ss_pred HcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhccc-CCcCCChhhhhHHHHHHHHHHHHHHcC
Q 045355 426 HAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD-GDQHNNLHDMQCMWYELASGESYFRQG 504 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~-~~~~~~l~~~q~~w~~~~lg~~y~r~g 504 (900)
..|++++|..+|+++++.+|+++.++...+.++.+.|++++|..++...... +.... .+..+|. ..+......|
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~---~~~~lw~--~~~~~e~~~G 477 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---KSGEIWA--RFLAFESNIG 477 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG---GCHHHHH--HHHHHHHHSS
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH---HHHHHHH--HHHHHHHHcC
Confidence 5788888888888888888888877777777777888888888887776653 21111 1122342 3455566789
Q ss_pred ChHHHHHHHHHHHHHhhhhh
Q 045355 505 DLGRALKKFLAVEKHYADIT 524 (900)
Q Consensus 505 ~~~~Alk~~~~v~~~~~~~~ 524 (900)
+.+.+.+.+.++.+.+++-.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHCchhc
Confidence 99999999999999987543
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=7.5e-25 Score=238.28 Aligned_cols=273 Identities=13% Similarity=0.051 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDL--------------SL-LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
..|++++|+..|++++..+|.+...+..+ +. ++...|++++|+..+++++...|.+..++..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 99999999999999999999988887776 66 6889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 045355 154 SHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLL 233 (900)
Q Consensus 154 ~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~ 233 (900)
++...|++++|+.. +.+++... |....++..+|.++...|++++|+..+++++...|++..++..+|.++
T Consensus 181 ~~~~~~~~~~A~~~---~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 181 LYNLSNNYDSAAAN---LRRAVELR-------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHTTCHHHHHHH---HHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHH---HHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999954 44455544 455689999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 234 VKIGRLEEAAELYRALLSMNPD------------NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 234 ~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
...|++++|+..|++++...|+ +...+..++.++ ...|++++|..++++++...|+..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL--------NVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH--------HHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999999999 788999999998 567999999999988877766544
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.2e-22 Score=235.51 Aligned_cols=370 Identities=12% Similarity=0.027 Sum_probs=202.3
Q ss_pred HHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 11 NLFKLIVKSYE----TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNC----MDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 11 ~l~~~a~~~~~----~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
..+..|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... .++.+++.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 116 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 34444444444 45555555555555443 344555555555555 45555555555555442 24444555
Q ss_pred HHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 83 YGLLYRS----DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 83 lg~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
+|.+|.. .+++++|+.+|+++.+. +++.++..+|.+|.. .+++++|+..|+++++. +++.+++.+|.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 5555554 44555555555555433 344555555555544 44555555555555443 344555555555
Q ss_pred HHH----cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHH
Q 045355 155 HHL----NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYK 226 (900)
Q Consensus 155 ~~~----~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~ 226 (900)
|.. .+++++|+ ..|.++...+ +..+++.+|.++.. .+++++|+.+|+++.+. .++.++
T Consensus 193 y~~g~g~~~~~~~A~---~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 258 (490)
T 2xm6_A 193 YSRGLGVERNDAISA---QWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQ 258 (490)
T ss_dssp HHHTSSSCCCHHHHH---HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred HhcCCCCCcCHHHHH---HHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 554 45555555 2333333211 12444455555544 44555555555554443 223444
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhh
Q 045355 227 EQEVSLLVK----IGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVK 302 (900)
Q Consensus 227 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 302 (900)
..+|.+|.. .+++++|+.+|+++++. +++.++..++.++..... -..+++++|+.+|+++.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~---g~~~~~~~A~~~~~~a~~--------- 324 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAE---GVAKNREQAISWYTKSAE--------- 324 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBT---TBCCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC---CCcCCHHHHHHHHHHHHh---------
Confidence 455555554 45555555555555433 334444444444411000 011344445544444433
Q ss_pred hchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHH
Q 045355 303 RIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWT 382 (900)
Q Consensus 303 ~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a 382 (900)
.+.+.....++.+|...+......+++..+.++... . . ..+
T Consensus 325 -------------------------~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~--------~----~~a 365 (490)
T 2xm6_A 325 -------------------------QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G--------E----KAA 365 (490)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T--------C----HHH
T ss_pred -------------------------cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C--------C----HHH
Confidence 244445555666655444344455566666555542 1 1 127
Q ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcC---ChhHH
Q 045355 383 LFFLAQHYDR----RGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKH----AGDLAAAATLADEARCMDLA---DRYVN 451 (900)
Q Consensus 383 ~~~la~~y~~----~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~----~G~~~eA~~~~~~al~ldp~---d~~l~ 451 (900)
++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|..+|+++++.+|+ ++...
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 8999999999 899999999999999864 68999999999999 89999999999999999854 55444
Q ss_pred HHHHHH
Q 045355 452 SECVKR 457 (900)
Q Consensus 452 ~~~a~~ 457 (900)
..++.+
T Consensus 444 ~~l~~~ 449 (490)
T 2xm6_A 444 ITEKKL 449 (490)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 444433
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=9.2e-25 Score=242.32 Aligned_cols=267 Identities=16% Similarity=0.122 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.+..+|..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHH----------------HHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILR----------------DLSLLQAQMRDLTGFVETRQQLLTLKPN--HRMNWIG 150 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 150 (900)
..|++++|+..|++++...|++...+. .++.++ ..|++++|+..+++++...|. +...+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999999877664 466666 999999999999999999999 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 045355 151 FAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEV 230 (900)
Q Consensus 151 la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la 230 (900)
+|.++...|++++|+. .+.+++... |....++..+|.++...|++++|+..+++++...|++..++..+|
T Consensus 223 l~~~~~~~g~~~~A~~---~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 292 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVD---CFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHTTCHHHHHH---HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHH---HHHHHHHhC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999995 455555554 455689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHh
Q 045355 231 SLLVKIGRLEEAAELYRALLSMNPDN-----------YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ 294 (900)
Q Consensus 231 ~~~~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~ 294 (900)
.++...|++++|+..|+++++.+|++ ...|..++.++ ...|++++|..++.+.+..
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL--------SMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH--------HHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH--------HHhCChHhHHHhHHHHHHH
Confidence 99999999999999999999999988 89999999998 4568888888888766544
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=8.7e-25 Score=242.70 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=195.5
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 30 KAADAILKKFPEHG----ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 30 ~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
..+...+...|.++ ..++.+|.++...|++++|+.+|++++..+|++..+|+.+|.++...|++++|+.+|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444443 34778888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcch
Q 045355 106 IDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNER 185 (900)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~ 185 (900)
++|++..++..+|.++...|++++|+..+++++...|++...+..++
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--------------------------------- 174 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK--------------------------------- 174 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------------------
Confidence 88888888888888888888888888888888887776655554441
Q ss_pred hchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD--KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGL 263 (900)
Q Consensus 186 ~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 263 (900)
.....+..+|.++...|++++|+..+++++...|+ ++.++..+|.++...|++++|+..|+++++.+|++...+..+
T Consensus 175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 175 -GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 01134445666666777777777777777777776 667777777777777777777777777777777777777777
Q ss_pred HHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcC
Q 045355 264 QKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQ 343 (900)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~ 343 (900)
+.++ ...|++++|+..|++++...|...
T Consensus 254 ~~~~--------~~~g~~~~A~~~~~~al~~~p~~~-------------------------------------------- 281 (365)
T 4eqf_A 254 GATL--------ANGDRSEEAVEAYTRALEIQPGFI-------------------------------------------- 281 (365)
T ss_dssp HHHH--------HHTTCHHHHHHHHHHHHHHCTTCH--------------------------------------------
T ss_pred HHHH--------HHcCCHHHHHHHHHHHHhcCCCch--------------------------------------------
Confidence 7766 445667777777766655544321
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-----------
Q 045355 344 PGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT----------- 412 (900)
Q Consensus 344 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~----------- 412 (900)
.+++.+|.+|...|++++|+.+|+++++..|.
T Consensus 282 -------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 282 -------------------------------------RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 04567777778888888888888888887765
Q ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 413 -VIDLYSVKSRILKHAGDLAAAATLADEA 440 (900)
Q Consensus 413 -~~~~~~~la~i~~~~G~~~eA~~~~~~a 440 (900)
...+|..++.++..+|+.+.|..+.++.
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 3667888888888888888777766653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.3e-23 Score=228.54 Aligned_cols=285 Identities=13% Similarity=0.106 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
...++.+|..+...|++++|+.++++++..+|.+..+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHH-HH-HHH
Q 045355 123 QMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYK-IS-LLE 200 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l-a~-~~~ 200 (900)
..|++++|+..+++++...|.+...+..+..... .. .....+ +. ++.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~-~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADV------------------------------DI-DDLNVQSEDFFFA 149 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------------------CCTT
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH------------------------------HH-HHHHHHHHhHHHH
Confidence 9999999999999999999998776655421110 00 111133 23 466
Q ss_pred HcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCc
Q 045355 201 ECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGE 280 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~ 280 (900)
..|++++|+..+++++...|++..++..+|.++...|++++|+..++++++.+|++...+..++.++ ...|+
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~ 221 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL--------ANGNR 221 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTC
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--------HHcCC
Confidence 7788889999999998888888888899999999999999999999999999999988888888887 55788
Q ss_pred HHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHh
Q 045355 281 IDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHS 360 (900)
Q Consensus 281 ~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~ 360 (900)
+++|+..|++++...|...
T Consensus 222 ~~~A~~~~~~a~~~~~~~~------------------------------------------------------------- 240 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYV------------------------------------------------------------- 240 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCH-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCH-------------------------------------------------------------
Confidence 8888888887766554321
Q ss_pred hcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHcC
Q 045355 361 IGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT------------VIDLYSVKSRILKHAG 428 (900)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~------------~~~~~~~la~i~~~~G 428 (900)
.+++.+|.+|...|++++|+.++++++...|. .+.++..+|.++...|
T Consensus 241 --------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 241 --------------------RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred --------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 14678889999999999999999999999998 8999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCC
Q 045355 429 DLAAAATLADEARCMDLAD 447 (900)
Q Consensus 429 ~~~eA~~~~~~al~ldp~d 447 (900)
++++|...++++++..|.+
T Consensus 301 ~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 301 RPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp CHHHHHHHTTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchh
Confidence 9999999999887765543
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=4.1e-21 Score=222.42 Aligned_cols=369 Identities=13% Similarity=0.023 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHH
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNC----MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS----DREYREAIK 98 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAi~ 98 (900)
.++..++++. .+.++++++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455555554 47789999999999998 89999999999999986 578899999999999 999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 045355 99 CYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL----NSNGSKAVEILEA 170 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~ 170 (900)
+|+++.+. .++.++..+|.+|.. .+++++|+..|+++... +++.+++.+|.+|.. .+++++|+ ..
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~---~~ 173 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAR---EW 173 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH---HH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH---HH
Confidence 99999875 578999999999999 89999999999999775 678999999999998 78999999 55
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH----cCCHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVK----IGRLEEA 242 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA 242 (900)
|.++... .+..+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|
T Consensus 174 ~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 174 YSKAAEQ---------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 5556553 235789999999998 89999999999999875 456788899999997 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhH
Q 045355 243 AELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYV 322 (900)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~ 322 (900)
+.+|+++++. .++.++..++.++... ....+++++|+.+|+++.+..
T Consensus 243 ~~~~~~a~~~--~~~~a~~~lg~~y~~g----~~~~~d~~~A~~~~~~a~~~~--------------------------- 289 (490)
T 2xm6_A 243 RVLFSQSAEQ--GNSIAQFRLGYILEQG----LAGAKEPLKALEWYRKSAEQG--------------------------- 289 (490)
T ss_dssp HHHHHHHHTT--TCHHHHHHHHHHHHHT----TTSSCCHHHHHHHHHHHHTTT---------------------------
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHcC---------------------------
Confidence 9999999876 5677888888776211 112566777777776653210
Q ss_pred HhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHh-----CCHH
Q 045355 323 RPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRR-----GQYD 397 (900)
Q Consensus 323 ~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~-----g~~~ 397 (900)
.+ .+++.+|.+|... ++++
T Consensus 290 ----------------------------------------------------~~----~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 290 ----------------------------------------------------NS----DGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp ----------------------------------------------------CH----HHHHHHHHHHHHCBTTBCCCHH
T ss_pred ----------------------------------------------------CH----HHHHHHHHHHHcCCCCCcCCHH
Confidence 00 1567778888776 8888
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCChhHHHHHHHHHHH----cCChHHHHHH
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKHAG---DLAAAATLADEARCMDLADRYVNSECVKRMLQ----ADQVSLAEKT 470 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~~G---~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~----~g~~eeA~~~ 470 (900)
+|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++.+. .++.....++.++.. .+++++|++.
T Consensus 314 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 314 QAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 899888888876 45678888888888866 788888899888887 456666677777777 7888888888
Q ss_pred HHHhcccCCcCCChhhhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHh
Q 045355 471 AALFTKDGDQHNNLHDMQCMWYELASGESYFR----QGDLGRALKKFLAVEKHY 520 (900)
Q Consensus 471 ~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r----~g~~~~Alk~~~~v~~~~ 520 (900)
+......+.+ .....+|.+|.. .+++.+|++.|+++...-
T Consensus 390 ~~~A~~~~~~----------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQGLS----------AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTTCH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8776654321 123488999998 899999999999988875
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=3.1e-23 Score=219.57 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS----HVCWHVYGL 85 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~ 85 (900)
..++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..+|..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999 4433 445999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..+|..+|...+..+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995555567999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhc---CC-----HHHHHHHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS---FERALAEMHKKESKI---VD-----KLAYKEQEVSLLV 234 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~Al~~l~~al~~~---p~-----~~~~~~~la~~~~ 234 (900)
..+.+++... |....+++.+|.++...|+ +++|+..++++++.. |+ ...++..+|.++.
T Consensus 163 ---~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 163 ---SSFVKVLELK-------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp ---HHHHHHHHHS-------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhC-------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4555566655 4556899999999999999 999999999998875 54 3478899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 235 KIGRLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 235 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
..|++++|+.+|+++++.+|+++.++..++.+.
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 999999999999999999999999999887765
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=8.5e-24 Score=234.75 Aligned_cols=255 Identities=12% Similarity=0.111 Sum_probs=227.7
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhCCCcHHHH
Q 045355 36 LKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE-YREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 36 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAi~~~~~al~~~p~~~~~~ 114 (900)
+..+|++.+++..+|.++...|++++|+..+++++.++|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456777889999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
..+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|++++|+ ..|.+++..+ |.+..+|.+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl---~~~~~al~l~-------P~~~~a~~~ 239 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL---QYVDQLLKED-------VRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH---HHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH---HHHHHHHHhC-------CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 6777778776 567799999
Q ss_pred HHHHHHH-cCCHHHH-----HHHHHHHhhhcCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 195 KISLLEE-CGSFERA-----LAEMHKKESKIVDKLAYKEQEVSLLVKIG--RLEEAAELYRALLSMNPDNYSYYEGLQKC 266 (900)
Q Consensus 195 la~~~~~-~g~~~~A-----l~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 266 (900)
+|.++.. .|.+++| +.+|++++.++|++..+|..+|.++...| ++++|+..++++ +.+|++..++..++.+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 9999999 5665777 59999999999999999999999999988 699999999998 9999999999999999
Q ss_pred hcccccCCCCCCCc-HHHHHHHHHHH-HHhcCcchhh
Q 045355 267 LGLYRDNGNYSSGE-IDELDALYKSL-AQQYTWSSAV 301 (900)
Q Consensus 267 ~~l~~~~~~~~~~~-~~~A~~~~~~~-~~~~p~~~~~ 301 (900)
+....+......++ .++|+.+|+++ .+..|.....
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 83221000000123 58999999999 8888876644
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-22 Score=211.54 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-------HHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS-------HVCW 80 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~ 80 (900)
....++..|..++..|++++|+..|+++++.+ +++.++..+|.++...|++++|+..+++++..+|.+ ..+|
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45678899999999999999999999999999 999999999999999999999999999999988876 6899
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (900)
..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987 5678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHH
Q 045355 161 GSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLE 240 (900)
Q Consensus 161 ~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (900)
+++|+ ..+.+++... |....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus 155 ~~~A~---~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 155 WPNAV---KAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH---HHHHHHHhcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999 5555566554 4456899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHh
Q 045355 241 EAAELYRALLSMN------PDNYSYYEGLQKCL 267 (900)
Q Consensus 241 eA~~~~~~al~~~------p~~~~~~~~l~~~~ 267 (900)
+|+..|+++++.+ |++...+..+..++
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 9999999999999 99988888887664
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.1e-22 Score=208.28 Aligned_cols=200 Identities=16% Similarity=0.070 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHh-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 120 LQAQM-----------RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 120 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
++... |++++|+..++++++++|++..+|..+|.++...|++++|+ ..|.+++..+ ..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~---~~~~~al~~~--------~~ 150 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE---ASLKQALALE--------DT 150 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC--------CC
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH---HHHHHHHhcc--------cc
Confidence 66666 66666666666666666666666666666666666666666 3334444332 11
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
..+++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++-
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 35666677777777777777777777777777777777777777777777777777776553
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.8e-22 Score=206.77 Aligned_cols=201 Identities=18% Similarity=0.124 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
+|+....++..|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++..+|..+|
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-----------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 85 LLYRSD-----------REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 85 ~~~~~~-----------g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
.++... |++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++ +++.++..+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045355 154 SHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKE 216 (900)
Q Consensus 154 ~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al 216 (900)
++...|++++|+ ..|.+++..+ |....++..+|.++...|++++|+..++++-
T Consensus 160 ~~~~~g~~~~A~---~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEAL---AQYAKALEQA-------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHH---HHHHHHHHHS-------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHH---HHHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999 5666667665 5667899999999999999999999998753
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.6e-20 Score=217.99 Aligned_cols=389 Identities=12% Similarity=0.029 Sum_probs=285.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 045355 32 ADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 32 ~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~ 111 (900)
++++++.+|.+..+|..++.. ...|++++|...|++++..+|.+...|..+|..+...|++++|+..|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHH-HHHHhcCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhh
Q 045355 112 EILRDLSL-LQAQMRDLTGFVE----TRQQLLTL---KPNHRMNWIGFAVSHHL---------NSNGSKAVEILEAYEGT 174 (900)
Q Consensus 112 ~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~l~~~~~~ 174 (900)
.+|..++. +....|++++|.+ .|++++.. +|.+...|..++..... .|+++.|. ..|.++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~---~~y~~a 156 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR---RVYQRG 156 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH---HHHHHH
Confidence 78888885 4456788887766 77777764 56778889988887765 68899998 555666
Q ss_pred hccCCCCCcchhchhHHHHHHHHHH-------------HHcCCHHHHHHHHHH------Hhhh-----cCCH-------H
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLL-------------EECGSFERALAEMHK------KESK-----IVDK-------L 223 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~Al~~l~~------al~~-----~p~~-------~ 223 (900)
+.. |.. .....|....... ...+++..|...+.. .++. .|.. .
T Consensus 157 l~~-P~~-----~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 157 CVN-PMI-----NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp TTS-CCT-----THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred Hhc-hhh-----hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 652 211 1122332222211 234567888777765 3332 2331 2
Q ss_pred HHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHH-------HHHHHH
Q 045355 224 AYKEQEVSLLVKI----GR----LEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEID-------ELDALY 288 (900)
Q Consensus 224 ~~~~~la~~~~~~----g~----~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~-------~A~~~~ 288 (900)
..|.......... ++ ...++..|++++..+|.++..|..++..+.-.... ....|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~-~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL-LAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchh-hhhccchhhhhhhhHHHHHHH
Confidence 4444443332221 23 24788999999999999999999999887210000 00134444 344444
Q ss_pred HHHHH-hcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCC
Q 045355 289 KSLAQ-QYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKY 367 (900)
Q Consensus 289 ~~~~~-~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~ 367 (900)
++++. ..|+
T Consensus 310 ~~Al~~~~p~---------------------------------------------------------------------- 319 (530)
T 2ooe_A 310 ERAISTLLKK---------------------------------------------------------------------- 319 (530)
T ss_dssp HHHTTTTCSS----------------------------------------------------------------------
T ss_pred HHHHHHhCcc----------------------------------------------------------------------
Confidence 44332 1221
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 368 PGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVI-DLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 368 ~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~-~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
... +|+.+|.++...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|...|++|++..|.
T Consensus 320 ---------~~~--l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 320 ---------NML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp ---------CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ---------cHH--HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 111 567889999999999999999999999999885 69999999999999999999999999999887
Q ss_pred ChhHHHHHHHH-HHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 045355 447 DRYVNSECVKR-MLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYAD 522 (900)
Q Consensus 447 d~~l~~~~a~~-~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~ 522 (900)
+..+....+.. +...|++++|.+++....+ .+... .+| ..+|..+.+.|++++|...|+++....+.
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~~--~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYV--LAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HHH--HHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HHH--HHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 76443333333 3368999999999987766 33211 233 48899999999999999999999887543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=1e-21 Score=210.71 Aligned_cols=278 Identities=12% Similarity=0.039 Sum_probs=233.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEH-GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY 93 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 93 (900)
.+...+..|+|.+|+..++++...+|++ .++...++.+|..+|++++|+..++. .+|....++..++..+...+++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4567888999999999999988878876 46888899999999999999998865 2666778889999999999999
Q ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 94 REAIKCYRNALRI--DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY 171 (900)
Q Consensus 94 ~eAi~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 171 (900)
++|++.+++++.. +|+++.++..+|.++...|++++|+..+++ |++..++..+|.++...|++++|+..++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~- 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKK- 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 9999999999876 699999999999999999999999999998 89999999999999999999999955544
Q ss_pred HhhhccCCCCCcchhchhHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 172 EGTLEDDYPPDNERCEHGEMLLY--KISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRAL 249 (900)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 249 (900)
++..+| ......+. +..++...|++++|+..|++++...|+++.++..+|.++..+|++++|+..|+++
T Consensus 156 --~~~~~p-------~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 156 --MQDQDE-------DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp --HHHHCT-------TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHhhCc-------CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454442 22222222 2234445699999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHH-HHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHh
Q 045355 250 LSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDE-LDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNY 321 (900)
Q Consensus 250 l~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~ 321 (900)
++.+|+++.++..++.++ ...|+..+ +..+++++++..|+++.+..+ ....+.|++++..|
T Consensus 227 l~~~p~~~~~l~~l~~~~--------~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~---~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLS--------QHLGKPPEVTNRYLSQLKDAHRSHPFIKEY---RAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTTCHHHHHHHHHHH--------HHTTCCHHHHHHHHHHHHHHCTTCHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHHHHHHHHc
Confidence 999999999999999887 44677765 678999999999999876532 22344555555444
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=1e-21 Score=207.78 Aligned_cols=261 Identities=10% Similarity=-0.053 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc----HHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN----IEILRDL 117 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~l 117 (900)
+++.++.+|.+++..|++++|+..|+++++.+|.+..+|..+|.++...|++++|+.+|++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3566788888888888888888888888888888888888888888888888888888888888 3333 3447888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHH
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKIS 197 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 197 (900)
|.++...|++++|+..+++++..+|++..+|..+|.++...|++++|+ ..+.+++..+ |....++..+|.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~al~~~-------~~~~~~~~~l~~ 150 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI---QYMEKQIRPT-------TTDPKVFYELGQ 150 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH---HHHGGGCCSS-------CCCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH---HHHHHHhhcC-------CCcHHHHHHHHH
Confidence 888888888888888888888888877777777777777777777776 4455555443 333455555553
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCC
Q 045355 198 LLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGR---LEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNG 274 (900)
Q Consensus 198 ~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~ 274 (900)
.....+++++|+..++++++..|++..++..+|.++...|+ +++|+..|+++++.
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------------- 208 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV---------------------- 208 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH----------------------
Confidence 33333355555555555555555555555555555555544 44444444444432
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHH
Q 045355 275 NYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLI 354 (900)
Q Consensus 275 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l 354 (900)
....+..
T Consensus 209 --------------------~~~~~~~----------------------------------------------------- 215 (272)
T 3u4t_A 209 --------------------CAPGGAK----------------------------------------------------- 215 (272)
T ss_dssp --------------------HGGGGGG-----------------------------------------------------
T ss_pred --------------------Hhccccc-----------------------------------------------------
Confidence 1110000
Q ss_pred HHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 045355 355 LELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAG 428 (900)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G 428 (900)
. ......++..+|.+|...|++++|+.+|+++++.+|+++.++-.++.+....+
T Consensus 216 -------------------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 216 -------------------Y-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -------------------G-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -------------------c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0 00011167889999999999999999999999999999999998888766544
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=7.2e-22 Score=221.68 Aligned_cols=309 Identities=15% Similarity=0.039 Sum_probs=220.2
Q ss_pred CCCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Q 045355 3 ASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG----ETLSMKGLTLNCMDRKSEAYELVRLGVKN------ 72 (900)
Q Consensus 3 ~~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~------ 72 (900)
.........++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 34455566788999999999999999999999999999884 57889999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcC--------------------
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN------IEILRDLSLLQAQMRD-------------------- 126 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~la~~~~~~g~-------------------- 126 (900)
.|....++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 34456788999999999999999999999999886543 4478899999999999
Q ss_pred HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 127 LTGFVETRQQLLTL------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 127 ~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
+++|+..+.+++.+ .|....++..+|.++...|++++|+..+........... . .+....++..+|.++.
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~--~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--D--KAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--C--cHHHHHHHHHHHHHHH
Confidence 88888888888765 222334566667777777777777654444433322211 0 1233345666666666
Q ss_pred HcCCHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCC
Q 045355 201 ECGSFERALAEMHKKESKIVDK------LAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNG 274 (900)
Q Consensus 201 ~~g~~~~Al~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~ 274 (900)
..|++++|+.++++++...+.. ..++..+|.++...|++++|+.+|+++++..+..
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------------ 300 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------------ 300 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc------------------
Confidence 6666666666666666544332 4455556666666666666666555554332110
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHH
Q 045355 275 NYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLI 354 (900)
Q Consensus 275 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l 354 (900)
.
T Consensus 301 ------------------------~------------------------------------------------------- 301 (406)
T 3sf4_A 301 ------------------------N------------------------------------------------------- 301 (406)
T ss_dssp ------------------------T-------------------------------------------------------
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcC
Q 045355 355 LELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP------TVIDLYSVKSRILKHAG 428 (900)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P------~~~~~~~~la~i~~~~G 428 (900)
.+.....++..+|.+|...|++++|+.+++++++..+ ....++..+|.++...|
T Consensus 302 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 302 --------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 0001112677899999999999999999999998743 44678899999999998
Q ss_pred CHHH
Q 045355 429 DLAA 432 (900)
Q Consensus 429 ~~~e 432 (900)
+...
T Consensus 362 ~~~~ 365 (406)
T 3sf4_A 362 LSYS 365 (406)
T ss_dssp TTSC
T ss_pred HhHH
Confidence 7744
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.8e-21 Score=202.16 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=211.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-------HHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-------IEIL 114 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-------~~~~ 114 (900)
.++++..+|.++...|++++|+.+|++++..+ .++.+|..+|.++...|++++|+.+|++++.++|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
..+|.++...|++++|+..+++++.+.|. +.++...|++++|+. .+.+++... |....++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~---~~~~~~~~~-------~~~~~~~~~ 144 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELK---KAEAEAYVN-------PEKAEEARL 144 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHH---HHHHHHHCC-------HHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHH---HHHHHHHcC-------cchHHHHHH
Confidence 99999999999999999999999999987 456778899999994 455555544 677899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCC
Q 045355 195 KISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNG 274 (900)
Q Consensus 195 la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~ 274 (900)
+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++..+..++.++
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~------- 217 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ------- 217 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHhc
Q 045355 275 NYSSGEIDELDALYKSLAQQY 295 (900)
Q Consensus 275 ~~~~~~~~~A~~~~~~~~~~~ 295 (900)
...|++++|...|+++++..
T Consensus 218 -~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 218 -IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -HHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHhhHHHHHHHHHHHHHhC
Confidence 66899999999999999998
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=7.2e-21 Score=204.01 Aligned_cols=272 Identities=10% Similarity=0.077 Sum_probs=174.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH
Q 045355 52 TLNCMDRKSEAYELVRLGVKNDIKS-HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130 (900)
Q Consensus 52 ~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (900)
..+..|++.+|+..+++....+|++ ......++.+|...|++++|+..++. .+|.+..++..++..+...|++++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3455666666666666655555555 23555566666666666666665544 1444455555566666666666666
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHH
Q 045355 131 VETRQQLLTL--KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERA 208 (900)
Q Consensus 131 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 208 (900)
++.+++++.. +|+++.+++.+|.++...|++++|+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al------------------------------------------- 121 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL------------------------------------------- 121 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHH-------------------------------------------
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHH-------------------------------------------
Confidence 6666665553 3555555555555555555555555
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHhcccccCCCCCCCcHHHHHH
Q 045355 209 LAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ--KCLGLYRDNGNYSSGEIDELDA 286 (900)
Q Consensus 209 l~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~--~~~~l~~~~~~~~~~~~~~A~~ 286 (900)
..+++ |+++.++..+|.++..+|++++|+..|+++++.+|++.......+ .++ ...|++++|..
T Consensus 122 -~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~--------~~~~~~~eA~~ 187 (291)
T 3mkr_A 122 -RTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA--------AGGEKLQDAYY 187 (291)
T ss_dssp -HHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------HCTTHHHHHHH
T ss_pred -HHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH--------hCchHHHHHHH
Confidence 44333 444555555666666666666666666666666666543322221 111 12355666666
Q ss_pred HHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCC
Q 045355 287 LYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGK 366 (900)
Q Consensus 287 ~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~ 366 (900)
+|++++..+|.+.
T Consensus 188 ~~~~~l~~~p~~~------------------------------------------------------------------- 200 (291)
T 3mkr_A 188 IFQEMADKCSPTL------------------------------------------------------------------- 200 (291)
T ss_dssp HHHHHHHHSCCCH-------------------------------------------------------------------
T ss_pred HHHHHHHhCCCcH-------------------------------------------------------------------
Confidence 6666655544322
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCc
Q 045355 367 YPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAA-AATLADEARCMDL 445 (900)
Q Consensus 367 ~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~e-A~~~~~~al~ldp 445 (900)
.+++.+|.++...|++++|+..|+++++.+|++++++..+|.++...|++.+ +.++++++++++|
T Consensus 201 --------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 201 --------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 0467888889999999999999999999999999999999999999999976 5689999999999
Q ss_pred CChhHHHHHHHHHHHcCChHHHH
Q 045355 446 ADRYVNSECVKRMLQADQVSLAE 468 (900)
Q Consensus 446 ~d~~l~~~~a~~~l~~g~~eeA~ 468 (900)
+++.+.. +..+.+.++++.
T Consensus 267 ~~~~~~d----~~~~~~~fd~~~ 285 (291)
T 3mkr_A 267 SHPFIKE----YRAKENDFDRLV 285 (291)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred CChHHHH----HHHHHHHHHHHH
Confidence 9997654 334445566654
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.5e-21 Score=214.48 Aligned_cols=304 Identities=12% Similarity=0.062 Sum_probs=231.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCC
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH----VCWHVYGLLYRSDREYREAIKCYRNALRI------DPD 109 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAi~~~~~al~~------~p~ 109 (900)
+....++..+|.++...|++++|+.+|++++...|.++ .+|..+|.++...|++++|+.+|++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567889999999999999999999999999999874 67899999999999999999999999887 344
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH------RMNWIGFAVSHHLNSN--------------------GSK 163 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 163 (900)
...++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 56789999999999999999999999999986643 3488999999999999 888
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHcC
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK------LAYKEQEVSLLVKIG 237 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~------~~~~~~la~~~~~~g 237 (900)
|+..+........... . .+....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|
T Consensus 166 A~~~~~~al~~~~~~~--~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 166 AVDFYEENLSLVTALG--D--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc--C--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 8865554443332211 1 14555677777777777777777777777777654322 236667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHH
Q 045355 238 RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREA 317 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a 317 (900)
++++|+.+|++++...|.. .
T Consensus 242 ~~~~A~~~~~~al~~~~~~------------------------------------------~------------------ 261 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQL------------------------------------------K------------------ 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHT------------------------------------------T------------------
T ss_pred ChHHHHHHHHHHHHHHHhC------------------------------------------c------------------
Confidence 7777777776666432211 0
Q ss_pred HHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 318 AFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 318 ~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
.+.....+++.+|.+|...|+++
T Consensus 262 ---------------------------------------------------------~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 262 ---------------------------------------------------------DRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------------------------CchHHHHHHHHHHHHHHHhCcHH
Confidence 00011126788999999999999
Q ss_pred HHHHHHHHHHHcCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------hhHHHHHHHHHHHcCCh
Q 045355 398 VALSKIDEAIEHTPTV------IDLYSVKSRILKHAGDLAAAATLADEARCMDLAD------RYVNSECVKRMLQADQV 464 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~------~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d------~~l~~~~a~~~l~~g~~ 464 (900)
+|+.+++++++..+.. ..++..+|.+|...|++++|..+|++++++.+.. ......++..+...|+.
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999886543 6789999999999999999999999999884433 13334444444444443
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=5.9e-21 Score=215.26 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH----VCWHVYGLLYRSDREYREAIKCYRNALRI------DPDNIE 112 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAi~~~~~al~~------~p~~~~ 112 (900)
...+..+|..+...|++++|+.+|++++...|++. .+|..+|.++...|++++|+.+|++++.+ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44566677777777777777777777777777765 46777777777777777777777777766 455566
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 045355 113 ILRDLSLLQAQMRDLTGFVETRQQLLTL------KPNHRMNWIGFAVSHHLNSN-----------------GSKAVEILE 169 (900)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~l~ 169 (900)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+ +++|+..+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7777777777777777777777777776 44455677777777777777 666664433
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH------HHHHHHHHHHHHcCCHHHHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL------AYKEQEVSLLVKIGRLEEAA 243 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~ 243 (900)
.......... . .+....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+
T Consensus 208 ~al~~~~~~~--~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 208 ENLKLMRDLG--D--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHT--C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcC--C--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 3322221110 0 134455667777777777777777777777766654332 25566666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHH
Q 045355 244 ELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVR 323 (900)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~ 323 (900)
.+|++++...|.. .
T Consensus 284 ~~~~~al~~~~~~------------------------------------------~------------------------ 297 (411)
T 4a1s_A 284 EHYKRTLALAVEL------------------------------------------G------------------------ 297 (411)
T ss_dssp HHHHHHHHHHHHT------------------------------------------T------------------------
T ss_pred HHHHHHHHHHHHc------------------------------------------C------------------------
Confidence 6666555432210 0
Q ss_pred hhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 045355 324 PLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 324 ~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~ 403 (900)
.+.....+++.+|.+|...|++++|+.++
T Consensus 298 ---------------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 298 ---------------------------------------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00011126788999999999999999999
Q ss_pred HHHHHcCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 404 DEAIEHTPTV------IDLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 404 ~~al~~~P~~------~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
++++...+.. ..++..+|.+|...|++++|..+|++++++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 9999886543 558999999999999999999999999998654
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=6.4e-21 Score=217.95 Aligned_cols=390 Identities=12% Similarity=0.033 Sum_probs=262.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRK---SEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~---~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
...+..+++.|++++|+..|+++.+. +++++++.+|.+|...|+. ++|+.+|++++.. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56788899999999999999999775 5778999999999999998 9999999999976 67789999997666
Q ss_pred cc-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHH
Q 045355 90 DR-----EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL-KPNHRMNWIGFAVSHHLNSNGSK 163 (900)
Q Consensus 90 ~g-----~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~ 163 (900)
.+ ++++|+.+|+++++.+ ++.+++.||.+|...+..+.+...++.+... .++++.+++.+|.++...+.+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 65 8999999999999854 4558999999999988766655554444433 24568899999999999998777
Q ss_pred HHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc----
Q 045355 164 AVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG---SFERALAEMHKKESKIVDKLAYKEQEVSLLVKI---- 236 (900)
Q Consensus 164 A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~---- 236 (900)
+......+.+..... .+.+++.+|.+|...| ++++|+..|+++.+..+.....++.+|.+|...
T Consensus 160 ~~~~a~~~~~~a~~~---------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 160 HLDDVERICKAALNT---------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp GHHHHHHHHHHHTTT---------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred CHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 775544454443322 1248899999999999 999999999999999999888889999999766
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHH
Q 045355 237 GRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFRE 316 (900)
Q Consensus 237 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~ 316 (900)
+++++|+.+|+++. |+++.++..++.++... ...+++++|+.+|+++.+.. .......++..+..+.
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~-----~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~---- 297 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDF-----PELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYYEGK---- 297 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS-----GGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCS----
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCC----
Confidence 79999999999998 89999999999983111 12678999999998886543 2222233333332110
Q ss_pred HHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHH----
Q 045355 317 AAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDR---- 392 (900)
Q Consensus 317 a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~---- 392 (900)
+......+++..+.++. +.. ..+++.||.+|..
T Consensus 298 ----------------------------g~~~d~~~A~~~~~~Aa---~g~------------~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 298 ----------------------------WVPADAKAAEAHFEKAV---GRE------------VAADYYLGQIYRRGYLG 334 (452)
T ss_dssp ----------------------------SSCCCHHHHHHHHHTTT---TTC------------HHHHHHHHHHHHTTTTS
T ss_pred ----------------------------CCCCCHHHHHHHHHHHh---CCC------------HHHHHHHHHHHHCCCCC
Confidence 00001233333333222 111 1267888888876
Q ss_pred hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHH
Q 045355 393 RGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKH----AGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAE 468 (900)
Q Consensus 393 ~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~----~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~ 468 (900)
..++++|+.+|+++.+. .++++.+.+|.+|.. ..++.+|..+|++|.+..+.+...........+..+++.+|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp SCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34999999999998874 568889999999885 458999999999998876544322211111122334566666
Q ss_pred HHHHHhcc
Q 045355 469 KTAALFTK 476 (900)
Q Consensus 469 ~~~~~~~~ 476 (900)
.++..+.+
T Consensus 413 ~~~~~~~~ 420 (452)
T 3e4b_A 413 RLVQQELA 420 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655444
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=6.6e-21 Score=214.85 Aligned_cols=281 Identities=13% Similarity=-0.006 Sum_probs=240.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCc
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG----ETLSMKGLTLNCMDRKSEAYELVRLGVKN------DIKS 76 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~ 76 (900)
.....++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+.++++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455678899999999999999999999999999987 58899999999999999999999999987 5677
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhcC-----------------HHHHHHH
Q 045355 77 HVCWHVYGLLYRSDREYREAIKCYRNALRI------DPDNIEILRDLSLLQAQMRD-----------------LTGFVET 133 (900)
Q Consensus 77 ~~~~~~lg~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~ 133 (900)
..++..+|.+|...|++++|+.+|++++.+ .|....++..+|.++...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999988 55667789999999999999 9999999
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHH
Q 045355 134 RQQLLTLK------PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFER 207 (900)
Q Consensus 134 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 207 (900)
+++++.+. +....++..+|.++...|++++|+..+....+...... .......++..+|.++...|++++
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG----DRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99998764 23445889999999999999999966665544433211 113345688999999999999999
Q ss_pred HHHHHHHHhhhcCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHhcccccCCC
Q 045355 208 ALAEMHKKESKIVD------KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN------YSYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 208 Al~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~l~~~~~~ 275 (900)
|+..+++++...+. ...++..+|.++...|++++|+.+|++++...+.. ...+..++.++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------- 353 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH-------- 353 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--------
Confidence 99999999987663 36789999999999999999999999999875432 45778888887
Q ss_pred CCCCcHHHHHHHHHHHHHhcCcch
Q 045355 276 YSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
...|++++|...|++++...+...
T Consensus 354 ~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhhcc
Confidence 568999999999999998877544
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=2.9e-20 Score=196.74 Aligned_cols=246 Identities=11% Similarity=0.077 Sum_probs=206.5
Q ss_pred HhhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q 045355 20 YETKQYKKGLKAADAILKKF----PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYRE 95 (900)
Q Consensus 20 ~~~g~~~~Al~~~~~~l~~~----p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 95 (900)
...|++++|+..|+++++.. |.++.++..+|.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34689999999999999973 55678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 045355 96 AIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 96 Ai~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l 175 (900)
|+.+|+++++.+|++..++..+|.++...|++++|+..+++++...|++.......+.. ...|++++|+..+.. .+
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~---~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ---HF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH---HH
Confidence 99999999999999999999999999999999999999999999999998766666544 666999999965544 44
Q ss_pred ccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355 176 EDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD----KLAYKEQEVSLLVKIGRLEEAAELYRALLS 251 (900)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 251 (900)
...+.. .....++.++...++.++|+..+++++...|. +..++..+|.++...|++++|+..|++++.
T Consensus 172 ~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 172 EKSDKE--------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHSCCC--------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCcc--------hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 433321 12245778888899999999999999987764 378999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHH
Q 045355 252 MNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALY 288 (900)
Q Consensus 252 ~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~ 288 (900)
.+|++...+. .++ ...|++++|+..|
T Consensus 244 ~~p~~~~~~~---~~~--------~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEHR---YAL--------LELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHHH---HHH--------HHHHHHHHC----
T ss_pred CCchhHHHHH---HHH--------HHHHHHHhhHHHH
Confidence 9998765442 222 1245666666655
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.4e-20 Score=204.52 Aligned_cols=278 Identities=14% Similarity=0.018 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCcH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG----ETLSMKGLTLNCMDRKSEAYELVRLGVKN------DIKSH 77 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~ 77 (900)
....++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+.++++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345788999999999999999999999999999984 67889999999999999999999999876 44557
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcC--------------------HHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN------IEILRDLSLLQAQMRD--------------------LTGFV 131 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 131 (900)
.++..+|.++...|++++|+..|++++++.+.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999876543 3489999999999999 99999
Q ss_pred HHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCH
Q 045355 132 ETRQQLLTL------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSF 205 (900)
Q Consensus 132 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 205 (900)
..+++++.. .+.....+..+|.++...|++++|+..++.......... ..+....++..+|.++...|++
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG----DKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHcCCH
Confidence 999998876 233456789999999999999999976666554433211 1144556899999999999999
Q ss_pred HHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHhcccccC
Q 045355 206 ERALAEMHKKESKIVDK------LAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN------YSYYEGLQKCLGLYRDN 273 (900)
Q Consensus 206 ~~Al~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~l~~~~ 273 (900)
++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ...+..++.++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~------ 313 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY------ 313 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH------
Confidence 99999999999875543 6788999999999999999999999999875433 45777888887
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCc
Q 045355 274 GNYSSGEIDELDALYKSLAQQYTW 297 (900)
Q Consensus 274 ~~~~~~~~~~A~~~~~~~~~~~p~ 297 (900)
...|++++|...|++++...+.
T Consensus 314 --~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 314 --TALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp --HHHTCHHHHHHHHHHHHHC---
T ss_pred --HHcCChHHHHHHHHHHHHHHHh
Confidence 5579999999999999887654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.8e-20 Score=194.33 Aligned_cols=212 Identities=12% Similarity=0.024 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG 203 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 203 (900)
.|++++|+..+++++...|.+...+..+|.++...|++++|+..+ .+++... +....++..+|.++...|
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---~~~~~~~-------~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL---QRAVELN-------ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH---HHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH---HHHHHhC-------CccHHHHHHHHHHHHHcC
Confidence 555555555555555555555555555555555555555555222 2222222 222345555555666666
Q ss_pred CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 204 SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQK 265 (900)
Q Consensus 204 ~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 265 (900)
++++|+..+++++...|++..++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 66666666666666666666666666666666677777777777776666666666655543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=2.4e-20 Score=193.45 Aligned_cols=219 Identities=15% Similarity=0.093 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999554
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG 237 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g 237 (900)
.+++... +....++..+|.++...|++++|+..++++++..|++..++..++.+....|
T Consensus 183 ---~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 183 ---AAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp ---HHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ---HHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 4455544 4456899999999999999999999999999999999999988887765544
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=1.6e-19 Score=184.36 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=162.0
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
..|+++.++..+|.++...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 118 SLLQAQM-RDLTGFVETRQQLLT--LKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 118 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
|.++... |++++|+..+++++. ..|.....+..+|.++...|++++|+.. +.+++... |....++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~-------~~~~~~~~~ 152 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY---LKRSLAAQ-------PQFPPAFKE 152 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH---HHHHHHHS-------TTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhC-------CCCchHHHH
Confidence 7777777 777777777777777 5555567777777777777777777743 33344433 334567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 195 KISLLEECGSFERALAEMHKKESKIV-DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGL 263 (900)
Q Consensus 195 la~~~~~~g~~~~Al~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 263 (900)
+|.++...|++++|+..+++++...| ++...+..++.++...|++++|..+++.+++.+|+++.+...+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88888888888888888888888888 8888888888888888999999888888888888888776544
No 47
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.5e-17 Score=199.07 Aligned_cols=388 Identities=13% Similarity=0.125 Sum_probs=270.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH
Q 045355 2 GASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPE----HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH 77 (900)
Q Consensus 2 p~~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 77 (900)
|..+.|.+.... +..+...|.+.+|++.+++++- .|. |...-..++.+..+. +..+..++..+.-..+
T Consensus 980 ~e~~~PeeVs~~--vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---- 1051 (1630)
T 1xi4_A 980 SETQDPEEVSVT--VKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---- 1051 (1630)
T ss_pred ccccCHHHhHHH--HHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc----
Confidence 344455443333 3345578999999999999984 444 444433344444443 3344444443332211
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
.-.+|.++...|.|++|..+|+++- .+ ...+..++...+++++|.+.++++ +.+.+|+.+|.++..
T Consensus 1052 --~~eIA~Iai~lglyEEAf~IYkKa~----~~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 --APDIANIAISNELFEEAFAIFRKFD----VN---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHcC----CH---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Confidence 2237888888888888888888862 11 111233344788888888888755 568888888888888
Q ss_pred cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC
Q 045355 158 NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG 237 (900)
Q Consensus 158 ~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g 237 (900)
.|++++|+ +.|.++ +....+..++.++.+.|++++|+++|..+.+..++. .+...+|.+|.+++
T Consensus 1118 ~G~~kEAI---dsYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1118 KGMVKEAI---DSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTN 1181 (1630)
T ss_pred CCCHHHHH---HHHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhc
Confidence 88888888 556553 223677888888888888888888888888776442 22334888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHH
Q 045355 238 RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREA 317 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a 317 (900)
++++ ++.| + ..+ +...+..+|..+ ...|++++|..+|..+ ..+.+++..+...+++..|
T Consensus 1182 rlee-le~f---I-~~~-n~ad~~~iGd~l--------e~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1182 RLAE-LEEF---I-NGP-NNAHIQQVGDRC--------YDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred CHHH-HHHH---H-hCC-CHHHHHHHHHHH--------HhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHH
Confidence 8875 3433 2 233 445556788877 6788888888888886 3556677777777888888
Q ss_pred HHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHH
Q 045355 318 AFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYD 397 (900)
Q Consensus 318 ~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~ 397 (900)
++.+.++ ..+.++..+...+.+.++...+...... +. ..|+ .+..++..|...|.++
T Consensus 1241 IEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~----Ii-----------v~~d----eLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1241 VDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH----IV-----------VHAD----ELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh----hh-----------cCHH----HHHHHHHHHHHcCCHH
Confidence 8888766 3455566555555555554433333221 11 0111 3557888999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCc-----CChhHHHHHHHHHHHcCChHHHHHH
Q 045355 398 VALSKIDEAIEHTPTVIDLYSVKSRILKH--AGDLAAAATLADEARCMDL-----ADRYVNSECVKRMLQADQVSLAEKT 470 (900)
Q Consensus 398 ~Al~~~~~al~~~P~~~~~~~~la~i~~~--~G~~~eA~~~~~~al~ldp-----~d~~l~~~~a~~~l~~g~~eeA~~~ 470 (900)
+|+.++++++.++|.+...+..+|.+|.+ -++..++++.|...+.+.| .+..++..++.+|.+.|+++.|..+
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999888888865 5789999999999999888 6678999999999999999999966
Q ss_pred H
Q 045355 471 A 471 (900)
Q Consensus 471 ~ 471 (900)
+
T Consensus 1378 m 1378 (1630)
T 1xi4_A 1378 M 1378 (1630)
T ss_pred H
Confidence 5
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=9.6e-20 Score=190.32 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=182.2
Q ss_pred hCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 38 KFPEH-GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 38 ~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
.+|.+ +.++..+|.++...|++++|+.++++++..+|.+..+|..+|.++...|++++|+.+|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 67888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLT--LKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+.. +.+++... +....++..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~-------~~~~~~~~~ 180 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY---FEKSLRLN-------RNQPSVALE 180 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH---HHHHHHHC-------SCCHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH---HHHHHhcC-------cccHHHHHH
Confidence 88888888888888888888888 7788888888888888888888888844 44444443 344578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 195 KISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGL 263 (900)
Q Consensus 195 la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 263 (900)
+|.++...|++++|+..+++++...|++...+..++.++...|++++|..+++++++.+|+++.+...+
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 899999999999999999999999998888999999999999999999999999999999988776543
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=5.7e-20 Score=199.70 Aligned_cols=208 Identities=13% Similarity=0.108 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS----HVCWHVYGLLYRSDREYREAIKCYRNALRI------DPDNIE 112 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAi~~~~~al~~------~p~~~~ 112 (900)
...++..|.++...|++++|+.+|++++..+|.+ ..++..+|.++...|++++|+.+|++++.+ .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4567889999999999999999999999999988 467889999999999999999999999887 445577
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCC--------------------HHHHHH
Q 045355 113 ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR------MNWIGFAVSHHLNSN--------------------GSKAVE 166 (900)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~--------------------~~~A~~ 166 (900)
++..+|.++...|++++|+..+++++...|... .++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 899999999999999999999999998765432 388899999999999 999986
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHcCCHH
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK------LAYKEQEVSLLVKIGRLE 240 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~ 240 (900)
.+........... ..+....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+++
T Consensus 165 ~~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 165 LYEENLSLVTALG----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 6655443332211 115566788899999999999999999999998775432 348888999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 045355 241 EAAELYRALLSMNP 254 (900)
Q Consensus 241 eA~~~~~~al~~~p 254 (900)
+|+.++++++...+
T Consensus 241 ~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 241 TASEYYKKTLLLAR 254 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886644
No 50
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=8.3e-18 Score=203.17 Aligned_cols=435 Identities=10% Similarity=0.065 Sum_probs=305.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 94 (900)
.|..+...|.|++|..+|+++- .+..+ +...+...|++++|.++++++ +.+.+|+.+|..+...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4777888999999999999962 22222 233344888999999998865 56889999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
+|+.+|.++ +++..+..++.++.+.|+|++|+++|..+.+..++. .....+|.+|.+++++++. +.|.+.
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleel----e~fI~~ 1192 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAEL----EEFING 1192 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHH----HHHHhC
Confidence 999999876 888999999999999999999999999999887542 2233589999999998853 344321
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
+. ...+..+|..+...|+|++|..+|.++ ..|..+|.+|.++|++++|+++++++
T Consensus 1193 -----------~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1193 -----------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 12 256668999999999999999999985 47889999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhh-hhcCCChh
Q 045355 255 DNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPL-LTKGVPSL 333 (900)
Q Consensus 255 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~-l~~~~p~~ 333 (900)
.+...|...+.+. ...|++..|...... +..+|+ ....+...|...|.|++++..+...+ +.+.....
T Consensus 1248 ~n~~aWkev~~ac--------ve~~Ef~LA~~cgl~-Iiv~~d--eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 NSTRTWKEVCFAC--------VDGKEFRLAQMCGLH-IVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred CCHHHHHHHHHHH--------hhhhHHHHHHHHHHh-hhcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 5568888877776 567888888877654 333332 33355666778899999999997766 55567778
Q ss_pred hhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----
Q 045355 334 FSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH---- 409 (900)
Q Consensus 334 ~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~---- 409 (900)
|..++.+|.. -+++...+.++.|...+...+-. ......+.|..+..+|.+-|+++.|+...-+....
T Consensus 1317 ftELaiLyaK-y~peklmEhlk~f~~rini~k~~-------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1317 FTELAILYSK-FKPQKMREHLELFWSRVNIPKVL-------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHhcccchHh-------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 8888888865 45666777777787665431100 01123446778889999999999999554443322
Q ss_pred --------CCCchHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhc-----------CcCChhHHHHHH
Q 045355 410 --------TPTVIDLYSVKSRILKHAG---------------DLAAAATLADEARCM-----------DLADRYVNSECV 455 (900)
Q Consensus 410 --------~P~~~~~~~~la~i~~~~G---------------~~~eA~~~~~~al~l-----------dp~d~~l~~~~a 455 (900)
.+.++++|+.....|...+ ++..++..|.+.-.+ +-++..+|..+.
T Consensus 1389 ~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~ 1468 (1630)
T 1xi4_A 1389 GQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 1468 (1630)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHH
Confidence 5688999999999998766 666666666522111 223334555555
Q ss_pred HHHHHcCChHHHHHHHHHhcc-cCCcCCC-hhhhhHHHHHHHHH-HHHHHcCChHHHHHHHHHH
Q 045355 456 KRMLQADQVSLAEKTAALFTK-DGDQHNN-LHDMQCMWYELASG-ESYFRQGDLGRALKKFLAV 516 (900)
Q Consensus 456 ~~~l~~g~~eeA~~~~~~~~~-~~~~~~~-l~~~q~~w~~~~lg-~~y~r~g~~~~Alk~~~~v 516 (900)
.++....+++.=...+..+.. +....+. +-...-+.| ..+| .+|.+.|+|.+|++.+.+-
T Consensus 1469 el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~f-rrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1469 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEF-RRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred HHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHhc
Confidence 555555444433333322222 1110000 000111112 2444 4455559999999998653
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=4.5e-20 Score=212.26 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=202.1
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 045355 24 QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRK-SEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRN 102 (900)
Q Consensus 24 ~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~ 102 (900)
.+++++..++++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..+|+.+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477788888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 045355 103 ALRIDPDNIEILRDLSLLQAQM---------RDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN--------SNGSKAV 165 (900)
Q Consensus 103 al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~ 165 (900)
+++++|+ ..++..+|.++... |++++|+..|+++++++|++..+|..+|.++... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999999 9999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 166 EILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245 (900)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 245 (900)
..|.+++..+|. .+....+++.+|.++...|++++|+..|++++...|++..++..++.++..+|++++|+..
T Consensus 242 ---~~~~~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 242 ---SAYAQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp ---HHHHHHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665520 0277899999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH
Q 045355 246 YRAL 249 (900)
Q Consensus 246 ~~~a 249 (900)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6544
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=2.6e-19 Score=204.61 Aligned_cols=349 Identities=12% Similarity=0.004 Sum_probs=223.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY---REAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..+|..+...|++++|+.+|+++... .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 45788999999999999999999875 4677889999999999999 9999999999976 77889999997766
Q ss_pred hc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHH
Q 045355 124 MR-----DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISL 198 (900)
Q Consensus 124 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 198 (900)
.+ ++++|+..|++++. ++++.+++.+|.+|...+....+...+..+.+.... ..+.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---------g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---------GYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------TCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------CCHHHHHHHHHH
Confidence 65 89999999999998 455669999999999988766666666666665542 334789999999
Q ss_pred HHHcCCHHHHH----HHHHHHhhhcCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc
Q 045355 199 LEECGSFERAL----AEMHKKESKIVDKLAYKEQEVSLLVKIG---RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYR 271 (900)
Q Consensus 199 ~~~~g~~~~Al----~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~ 271 (900)
|...+.+++++ .+++.+...+|. ++..+|.+|...| ++++|+..|+++.+.+|.+...+..++.++...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g- 226 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA- 226 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 99999555444 445555555555 8899999999999 999999999999999999999888999888211
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHH
Q 045355 272 DNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILE 351 (900)
Q Consensus 272 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~ 351 (900)
....+++++|+.+|+++. |.+. .
T Consensus 227 ---~~~~~d~~~A~~~~~~aa---~g~~--------------------------------~------------------- 249 (452)
T 3e4b_A 227 ---TLGTPDEKTAQALLEKIA---PGYP--------------------------------A------------------- 249 (452)
T ss_dssp ---GGSSCCHHHHHHHHHHHG---GGST--------------------------------H-------------------
T ss_pred ---CCCCCCHHHHHHHHHHHc---CCCH--------------------------------H-------------------
Confidence 012367888888887764 2221 1
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHH-H--HHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 045355 352 QLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQH-Y--DRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAG 428 (900)
Q Consensus 352 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~-y--~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G 428 (900)
+++.+|.+ | ...|++++|+.+|+++++.. ++.+++.+|.+|. .|
T Consensus 250 ------------------------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 250 ------------------------------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EG 296 (452)
T ss_dssp ------------------------------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HC
T ss_pred ------------------------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cC
Confidence 34445554 2 23556666666666665433 5566666666665 34
Q ss_pred -----CHHHHHHHHHHHHhcCcCChhHHHHHHHHHHH----cCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHH
Q 045355 429 -----DLAAAATLADEARCMDLADRYVNSECVKRMLQ----ADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGES 499 (900)
Q Consensus 429 -----~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~----~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~ 499 (900)
++++|+.+|+++. +.++.....++.++.. ..++++|...+....+.+++.. .+.+|.+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A----------~~~Lg~~ 363 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA----------DFAIAQL 363 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH----------HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH----------HHHHHHH
Confidence 6666666666665 5555444445544443 1256666655555544333222 2255666
Q ss_pred HHH----cCChHHHHHHHHHHHH
Q 045355 500 YFR----QGDLGRALKKFLAVEK 518 (900)
Q Consensus 500 y~r----~g~~~~Alk~~~~v~~ 518 (900)
|.. ..++.+|+..|+...+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 654 3466677776665544
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=1.3e-19 Score=179.79 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=114.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045355 76 SHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSH 155 (900)
Q Consensus 76 ~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (900)
++.+|+.+|.+|...|+|++|+.+|+++++++|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 045355 156 HLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVK 235 (900)
Q Consensus 156 ~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~ 235 (900)
...++++.|. ..+.+++... |....++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|..
T Consensus 84 ~~~~~~~~a~---~~~~~a~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 84 FMIDEKQAAI---DALQRAIALN-------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHTTCHHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHH---HHHHHHHHhC-------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 6666666666 3333333333 33445666667777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 045355 236 IGRLEEAAELYRALLSMNPDNYS 258 (900)
Q Consensus 236 ~g~~~eA~~~~~~al~~~p~~~~ 258 (900)
+|++++|+..|+++++.+|+++.
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCHH
Confidence 77777777777777777776543
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=1.1e-18 Score=184.96 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNC----MDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
.....++..|..++..|++++|+.+|+++++ |+++.+++.+|.++.. .|++++|+.+|++++..+ ++.+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 3456788999999999999999999999998 8889999999999999 999999999999999975 7889999
Q ss_pred HHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 83 YGLLYRS----DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 83 lg~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+..|+++++.. +..++..+|.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 9999999 999999999999999874 88999999999999 999999999999999976 67899999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHH
Q 045355 155 HHL----NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYK 226 (900)
Q Consensus 155 ~~~----~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~ 226 (900)
+.. .+++++|+ ..+.+++..+ ...+++.+|.++.. .+++++|+..|+++++..| +.++
T Consensus 156 ~~~~~~~~~~~~~A~---~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~ 221 (273)
T 1ouv_A 156 YDAGRGTPKDLKKAL---ASYDKACDLK---------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC 221 (273)
T ss_dssp HHHTSSSCCCHHHHH---HHHHHHHHTT---------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHcCCCCCCCHHHHH---HHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence 999 99999999 5555566532 24789999999999 9999999999999999876 7788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 227 EQEVSLLVK----IGRLEEAAELYRALLSMNPDNYSYYEG 262 (900)
Q Consensus 227 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~ 262 (900)
..+|.+|.. .+++++|+.+|+++++.+|++...+..
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999999999876555443
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=9.4e-19 Score=182.74 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 89 SDREYREAIKCYRNALR--IDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
..|++++|+.+|++++. ..|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHH
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQ 228 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~ 228 (900)
.+ .+++... +....++..++.++...|++++|...+++++...|+++.+...
T Consensus 197 ~~---~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 197 YY---DLFAQGG-------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HH---HHHHTTS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HH---HHHHHhC-------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 54 4455544 3455789999999999999999999999999999998876553
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=1.8e-18 Score=176.55 Aligned_cols=215 Identities=12% Similarity=0.081 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
-|.....++..|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-cCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 85 LLYRSD-REYREAIKCYRNALR--IDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 85 ~~~~~~-g~~~eAi~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
.++... |++++|+.+|++++. ..|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 999999 999999999999999 67778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchh-chhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERC-EHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQE 229 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~l 229 (900)
++|+..++.. +... | .....+..++.++...|+++.|..+++.+....|+++.+...+
T Consensus 164 ~~A~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKY---QSRV-------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHH---HHHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH---HHhC-------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999655554 4433 3 3456788889999999999999999999999999988776544
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=5.2e-19 Score=175.38 Aligned_cols=166 Identities=18% Similarity=0.201 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
..++..|..++..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 90 DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
.++++.|+..+.+++..+|++..++..+|.++..+|++++|+..|+++++++|+++.+|..+|.++...|++++|+ .
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~---~ 162 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV---K 162 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH---H
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH---H
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666 4
Q ss_pred HHHhhhccC
Q 045355 170 AYEGTLEDD 178 (900)
Q Consensus 170 ~~~~~l~~~ 178 (900)
.|.++++.+
T Consensus 163 ~~~~al~~~ 171 (184)
T 3vtx_A 163 YFKKALEKE 171 (184)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 444445443
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=3.9e-18 Score=180.83 Aligned_cols=237 Identities=13% Similarity=0.015 Sum_probs=208.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS----DREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
+|+++.+++.+|.++...|++++|+.+|++++. |.+..+++.+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 588999999999999999999999999999998 7788999999999999 999999999999999885 88999
Q ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhccCCCCCcchh
Q 045355 115 RDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL----NSNGSKAVEILEAYEGTLEDDYPPDNERC 186 (900)
Q Consensus 115 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~l~~~~~~~~~~~ 186 (900)
..+|.++.. .+++++|+..|++++.. +++.+++.+|.++.. .+++++|+ ..+.+++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~---~~~~~a~~~~-------- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAV---EYFTKACDLN-------- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH---HHHHHHHHTT--------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHH---HHHHHHHhcC--------
Confidence 999999999 99999999999999987 488999999999999 99999999 5556666543
Q ss_pred chhHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Q 045355 187 EHGEMLLYKISLLEE----CGSFERALAEMHKKESKIVDKLAYKEQEVSLLVK----IGRLEEAAELYRALLSMNPDNYS 258 (900)
Q Consensus 187 ~~~~~~~~la~~~~~----~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~ 258 (900)
...++..+|.++.. .+++++|+..|+++++.. ++.++..+|.+|.. .+++++|+.+|+++++.+| +.
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~ 219 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GG 219 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HH
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HH
Confidence 34788999999999 999999999999999874 46888999999999 9999999999999999876 78
Q ss_pred HHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh
Q 045355 259 YYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV 301 (900)
Q Consensus 259 ~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 301 (900)
++..++.++... .-..+++++|+..|+++.+..|.....
T Consensus 220 a~~~l~~~~~~g----~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 220 GCFNLGAMQYNG----EGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHHHHTT----SSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcC----CCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 888999888210 012788999999999999998866533
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=2.5e-18 Score=186.06 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hCCCH-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHhc
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLN-------CMDRK-------SEAYELVRLGVK-NDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~-------~~g~~-------~eA~~~~~~al~-~~p~~~~~~~~lg~~~~~~ 90 (900)
++|+..|++++..+|+++++|+.+|..+. ..|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 78999999999999999999999999987 36886 999999999999 7999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIE-ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL-NSNGSKAVEIL 168 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l 168 (900)
|++++|+.+|++++++.|.+.. +|..++.++...|++++|+..|+++++..|.....|...+..... .|++++|..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~-- 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-- 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH--
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH--
Confidence 9999999999999999999987 999999999999999999999999999999998888877776544 799999995
Q ss_pred HHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---cCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 045355 169 EAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK---IVD-KLAYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~---~p~-~~~~~~~la~~~~~~g~~~eA~~ 244 (900)
.|++++... |....++..++.++...|++++|+..|++++.. .|+ ...+|..++.++...|++++|..
T Consensus 191 -~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 191 -IFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp -HHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred -HHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555544 456689999999999999999999999999995 453 67899999999999999999999
Q ss_pred HHHHHHHhCCCCH
Q 045355 245 LYRALLSMNPDNY 257 (900)
Q Consensus 245 ~~~~al~~~p~~~ 257 (900)
+++++++..|++.
T Consensus 263 ~~~~a~~~~p~~~ 275 (308)
T 2ond_A 263 VEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHccccc
Confidence 9999999999864
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=3.1e-19 Score=183.80 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFP-EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
..++..|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|++..+|..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 6788888889999999999999999999888 888888889999999999999999999999999998888999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 045355 89 SDREYREAIKCYRNALRIDPDNI-------EILRDLSLLQAQMRDLTGFVETRQQLLTLKPN--HRMNWIGFAVSHHLNS 159 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 159 (900)
..|++++|+.+|+++++++|++. .++..+|.++...|++++|+..|+++++++|+ +..+|..+|.++...|
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 56888888888888888888888888888888 8888888888887665
Q ss_pred C
Q 045355 160 N 160 (900)
Q Consensus 160 ~ 160 (900)
+
T Consensus 168 ~ 168 (228)
T 4i17_A 168 A 168 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=5.9e-18 Score=174.14 Aligned_cols=212 Identities=12% Similarity=0.090 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI-KSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
.+.++++++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+.+|+++++.+|++..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356789999999999999999999999999999998 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhc--h
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHR-------MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCE--H 188 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~--~ 188 (900)
|.++..+|++++|+..++++++..|+++ ..|..+|.++...|++++|+ ..|.+++..+ |. .
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~---~~~~~al~~~-------p~~~~ 152 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE---ENYKHATDVT-------SKKWK 152 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHTTSS-------CHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH---HHHHHHHhcC-------CCccc
Confidence 9999999999999999999999999998 66999999999999999999 6677777765 56 6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
..+++.+|.++...|+ ..++++....+.....+ .+......+.+++|+.+|+++++++|++..+...++.+.
T Consensus 153 ~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7899999999976654 44566666655443332 344556677899999999999999999999988887765
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=2.4e-18 Score=181.87 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++..+|.+..+|..+|.++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
...|++++|+.+|+++++.+|++......++.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|+
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~-- 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM-- 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH--
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHH--
Confidence 999999999999999999999998776666544 6679999999999999999998877654 777788888998888
Q ss_pred HHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 168 LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELY 246 (900)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 246 (900)
..+.+++...+. ..+....++..+|.++...|++++|+..|++++..+|++... .+.++..+|++++|+..|
T Consensus 198 -~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 -ERLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred -HHHHHHhccccc---ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 555555554321 113447899999999999999999999999999999976443 477889999999999887
No 63
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.81 E-value=6.5e-18 Score=180.11 Aligned_cols=251 Identities=10% Similarity=0.075 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQY-KKGLKAADAILKKFPEHGETLSMKGLTLNCMD--RKSEAYELVRLGVKNDIKSHVCWHVY 83 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~-~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l 83 (900)
+.-..++.........|.+ ++|+..++++|..+|++..+|..++.++..+| ++++++.++.+++..+|++..+|+..
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 3445566666667777776 68999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHH----Hhc---cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 84 GLLY----RSD---REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT--GFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 84 g~~~----~~~---g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
+.++ ... +++++++.++.++++.+|.|..+|...+.+....|.++ ++++.+.++++.+|.+..+|..++.+
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999 666 79999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhc---CCHHH
Q 045355 155 HHLNSN------GSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFER-ALAEMHKKESKI---VDKLA 224 (900)
Q Consensus 155 ~~~~g~------~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-Al~~l~~al~~~---p~~~~ 224 (900)
+...|. +++++ +.+.+++..+ |.+..+|.+++.++...|+... ....+.+++... |.++.
T Consensus 190 l~~l~~~~~~~~~~eEl---~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 190 LFSKKHLATDNTIDEEL---NYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp HHSSGGGCCHHHHHHHH---HHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred HHhccccchhhhHHHHH---HHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 999887 88887 6667777766 5667899999999999998655 455777777665 88899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHh
Q 045355 225 YKEQEVSLLVKIGRLEEAAELYRALLS-MNPDNYSYYEGLQKCL 267 (900)
Q Consensus 225 ~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~l~~~~ 267 (900)
++..++.++.+.|+.++|+++|+.+.+ .+|-...+|...+..+
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 999999999999999999999999997 7999999998887665
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=2.2e-18 Score=192.63 Aligned_cols=244 Identities=13% Similarity=0.021 Sum_probs=184.3
Q ss_pred CCh-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC---CCHHHHHHHH----HHHHhCCCHHHHH-----------HH
Q 045355 5 LPS-KDANLFKLIVKSYETKQYKKGLKAADAILKKFP---EHGETLSMKG----LTLNCMDRKSEAY-----------EL 65 (900)
Q Consensus 5 l~~-~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p---~~~~~~~~lg----~~~~~~g~~~eA~-----------~~ 65 (900)
+|+ .-...+.....+...+++++|..+++.+.+..+ .+.+.+.... ......+.++.+. ..
T Consensus 7 ~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 7 ISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 443 446778888889999999999999999876432 3555443222 2222234444444 55
Q ss_pred HHHHHHcCCCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHhh---CCC---cHHHHHHHHHHHHHhcCHHHHHHH
Q 045355 66 VRLGVKNDIKSHV------CWHVYGLLYRSDREYREAIKCYRNALRI---DPD---NIEILRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 66 ~~~al~~~p~~~~------~~~~lg~~~~~~g~~~eAi~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~ 133 (900)
+++.-. .|.... .++.+|.++...|++++|+.+|++++.+ .++ ...++..+|.++..+|+++.|+..
T Consensus 87 ~~~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 87 LLEIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 554322 333322 3456999999999999999999999987 233 457899999999999999999999
Q ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 134 RQQLLTLKPNH-------RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 134 ~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
+++++.+.+.. ..++..+|.++...|++++|+..+........... ..+....++..+|.++...|+++
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK----QPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHCCCHH
Confidence 99999975443 35788999999999999999965555444333221 11455678999999999999999
Q ss_pred HHHHHHHHHhh-----hc-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 207 RALAEMHKKES-----KI-VDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 207 ~Al~~l~~al~-----~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
+|+.++++++. .. |....++..+|.++..+|++++|+.+++++++..
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999998 45 7888999999999999999999999999988763
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=9e-19 Score=201.37 Aligned_cols=214 Identities=13% Similarity=0.037 Sum_probs=196.4
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 045355 58 RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY-REAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQ 136 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (900)
++++++..+++.....|.+..+|+.+|.++...|+| ++|+.+|+++++++|++..+|..+|.++...|++++|+..|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc-----
Q 045355 137 LLTLKPNHRMNWIGFAVSHHLN---------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC----- 202 (900)
Q Consensus 137 al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~----- 202 (900)
+++++|+ ..++..+|.++... |++++|+ ..+.+++..+ |....++..+|.++...
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~---~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV---RQAKLAVQMD-------VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHH---HHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999 79999999999999 9999999 5666677665 56678999999999999
Q ss_pred ---CCHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCC
Q 045355 203 ---GSFERALAEMHKKESKIV---DKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNY 276 (900)
Q Consensus 203 ---g~~~~Al~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~ 276 (900)
|++++|+..|++++..+| +++.++..+|.+|...|++++|+..|+++++.+|++..++..++.++ .
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~--------~ 303 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL--------E 303 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------H
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------H
Confidence 999999999999999999 99999999999999999999999999999999999999999999987 3
Q ss_pred CCCcHHHHHHHHHH
Q 045355 277 SSGEIDELDALYKS 290 (900)
Q Consensus 277 ~~~~~~~A~~~~~~ 290 (900)
..|++++|+..+.+
T Consensus 304 ~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 304 FLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 35666777665543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=8.7e-18 Score=181.79 Aligned_cols=222 Identities=9% Similarity=0.038 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-------ccCH-------HHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHh
Q 045355 60 SEAYELVRLGVKNDIKSHVCWHVYGLLYRS-------DREY-------REAIKCYRNALR-IDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 60 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~eAi~~~~~al~-~~p~~~~~~~~la~~~~~~ 124 (900)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 999999999999 7999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH-c
Q 045355 125 RDLTGFVETRQQLLTLKPNHRM-NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE-C 202 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~-~ 202 (900)
|++++|+..|++++++.|.++. +|..++.++...|++++|. ..|.+++...+ ....++...+.+... .
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~a~~~~p-------~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR---MIFKKAREDAR-------TRHHVYVTAALMEYYCS 182 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH---HHHHHHHTSTT-------CCTHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH---HHHHHHHhcCC-------CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987 9999999999999999999 55666676553 234566655555433 7
Q ss_pred CCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHhcccccCCCCCC
Q 045355 203 GSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM---NPD-NYSYYEGLQKCLGLYRDNGNYSS 278 (900)
Q Consensus 203 g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~-~~~~~~~l~~~~~l~~~~~~~~~ 278 (900)
|++++|+..|+++++..|+++.+|..+|.++...|++++|+.+|++++.. .|+ ....|..++... ...
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~--------~~~ 254 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE--------SNI 254 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH--------HHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--------HHc
Confidence 99999999999999999999999999999999999999999999999996 553 778888888876 446
Q ss_pred CcHHHHHHHHHHHHHhcCcch
Q 045355 279 GEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 279 ~~~~~A~~~~~~~~~~~p~~~ 299 (900)
|+.+.+..+++++.+.+|++.
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHHccccc
Confidence 899999999999999999765
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=187.20 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=198.3
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKK--------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--- 72 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--- 72 (900)
..|.....++..|..++..|++++|+..++++++. .|..+.++..+|.++...|++++|+.++++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34566678889999999999999999999999994 6677889999999999999999999999999986
Q ss_pred -----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 045355 73 -----DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID--------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLT 139 (900)
Q Consensus 73 -----~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (900)
.|....++..+|.++...|++++|+.+|++++++. |....++..+|.++...|++++|+..+++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999874 55677899999999999999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc-----CCCCCcchhchhHHHHHHHHHHHHcCCHH
Q 045355 140 L--------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLED-----DYPPDNERCEHGEMLLYKISLLEECGSFE 206 (900)
Q Consensus 140 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 206 (900)
. .|.....+..+|.++...|++++|+..++........ ..+...........+...+..+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 8 6667788999999999999999999766655443211 01111111233445555666667777888
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045355 207 RALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 207 ~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 255 (900)
+|...+.++....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 8888999999899999999999999999999999999999999998775
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=4.3e-18 Score=203.42 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=161.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 045355 2 GASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWH 81 (900)
Q Consensus 2 p~~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 81 (900)
|.+.|....++...|..+.+.|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++..+|+
T Consensus 2 pgs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
.+|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..++.++|.++...|++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 045355 162 SKAVEILEAY 171 (900)
Q Consensus 162 ~~A~~~l~~~ 171 (900)
++|.+.++..
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999554443
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=2.2e-18 Score=205.95 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=124.7
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
..|++++++..+|.++..+|++++|+.+|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHH
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKIS 197 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 197 (900)
|.++..+|++++|++.|+++++++|++..+|.++|.++...|++++|+ ..|+++++.+ |++..++..+|.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi---~~~~~Al~l~-------P~~~~a~~~L~~ 153 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI---ASYRTALKLK-------PDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC-------SCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhC-------CCChHHHhhhhh
Confidence 888888888888888888888888777777777777776666666666 4444455444 344455555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcC
Q 045355 198 LLEECGSFERALAEMHKKESKIV 220 (900)
Q Consensus 198 ~~~~~g~~~~Al~~l~~al~~~p 220 (900)
++...|++++|.+.+++++++.|
T Consensus 154 ~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhCh
Confidence 55555555555555555555443
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=4.4e-18 Score=190.10 Aligned_cols=235 Identities=10% Similarity=0.064 Sum_probs=197.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CcHHHH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKK---FPE---HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI-------KSHVCW 80 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~---~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~ 80 (900)
..|..++..|+|++|+..|+++++. .|+ .+.++..+|.++...|++++|+.++++++...+ ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3889999999999999999999986 333 467999999999999999999999999998633 335689
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hC-CCCHHHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPDN------IEILRDLSLLQAQMRDLTGFVETRQQLLT-----LK-PNHRMNW 148 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~ 148 (900)
..+|.+|...|++++|+.+|++++++.+.. ..++..+|.++..+|++++|+..+++++. .+ |....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 999999999999999999999999885432 25799999999999999999999999999 45 7778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCHHHH
Q 045355 149 IGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS---FERALAEMHKKESKIVDKLAY 225 (900)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~Al~~l~~al~~~p~~~~~ 225 (900)
..+|.++...|++++|+..++......... .+ +.....+..++.++...|+ +.+|+..+++. ...|....+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GD--VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC--HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 999999999999999996665544433221 11 3333446779999999999 88888888886 455667788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045355 226 KEQEVSLLVKIGRLEEAAELYRALLSMNP 254 (900)
Q Consensus 226 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 254 (900)
+..+|.+|...|++++|..+|+++++...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998643
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=4.9e-17 Score=171.13 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=171.9
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc--
Q 045355 36 LKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-- 110 (900)
Q Consensus 36 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-- 110 (900)
....|.+++.++.+|..++..|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999988 8899999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 111 -IEILRDLSLLQAQ--------MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 111 -~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
..+++.+|.++.. .|++++|+..|++++...|++..++..+..+.. ..
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~--------------~~--------- 144 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE--------------LR--------- 144 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH--------------HH---------
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH--------------HH---------
Confidence 6789999999999 999999999999999999998766544432211 11
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD---KLAYKEQEVSLLVKI----------GRLEEAAELYRA 248 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~~~~ 248 (900)
......++.+|.++...|++++|+..|++++...|+ ...++..+|.+|..+ |++++|+..|++
T Consensus 145 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 145 ----AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 122356788999999999999999999999999888 778999999999987 999999999999
Q ss_pred HHHhCCCCHHHHHH
Q 045355 249 LLSMNPDNYSYYEG 262 (900)
Q Consensus 249 al~~~p~~~~~~~~ 262 (900)
+++..|+++.+...
T Consensus 221 ~~~~~p~~~~~~~a 234 (261)
T 3qky_A 221 LLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHCTTCTHHHHH
T ss_pred HHHHCCCChHHHHH
Confidence 99999999654433
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=184.87 Aligned_cols=249 Identities=14% Similarity=0.147 Sum_probs=199.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh----
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI---- 106 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~---- 106 (900)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999984 6777889999999999999999999999999987
Q ss_pred ----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045355 107 ----DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLK--------PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGT 174 (900)
Q Consensus 107 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 174 (900)
.|....++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..++.....
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999874 556678999999999999999999777666555
Q ss_pred hccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---------------HHHHHHHHHHHHHHcCCH
Q 045355 175 LEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD---------------KLAYKEQEVSLLVKIGRL 239 (900)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~---------------~~~~~~~la~~~~~~g~~ 239 (900)
......... +....++..+|.++...|++++|+..+++++...+. ....+...+..+...+.+
T Consensus 183 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 183 YQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHTSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHhCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 433222222 677789999999999999999999999999986543 234455566666777888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCc
Q 045355 240 EEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTW 297 (900)
Q Consensus 240 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 297 (900)
.+|...++.++...|.....+..++.++ ...|++++|...|+++++..|.
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALY--------RRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHhhc
Confidence 8888999999999999999999999998 5679999999999999988764
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.75 E-value=3.3e-17 Score=196.81 Aligned_cols=199 Identities=13% Similarity=-0.029 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAIL--------KKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWH 81 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 81 (900)
...+..+ +..|++++|+..+++++ +.+|++.++++.+|.++..+|++++|+..|+++++.+|++..+|+
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 471 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW 471 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH
Confidence 3444444 78899999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
.+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++ +..|+++++++|++..+|+++|.++...|++
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC--------HHHHHHHHHHHhhhcCCH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS--------FERALAEMHKKESKIVDK 222 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~Al~~l~~al~~~p~~ 222 (900)
++|+ ..|.+++..+ |.+..+++.+|.++...|+ +.+|...+.......|..
T Consensus 551 ~~A~---~~~~~al~l~-------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 551 VGAV---RTLDEVPPTS-------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHH---HHHHTSCTTS-------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHH---HHHHhhcccC-------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9999 7778888776 6778999999999977665 455555554443334443
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=4.4e-17 Score=174.72 Aligned_cols=226 Identities=9% Similarity=0.034 Sum_probs=178.7
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhccCHHHHH
Q 045355 24 QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK------SHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 24 ~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAi 97 (900)
++++|+..|+++ |.++...|++++|+..|.+++.+.+. ...+|..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 66788999999999999999987422 2568999999999999999999
Q ss_pred HHHHHHHhhCCCc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 045355 98 KCYRNALRIDPDN------IEILRDLSLLQAQM-RDLTGFVETRQQLLTLKPNH------RMNWIGFAVSHHLNSNGSKA 164 (900)
Q Consensus 98 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 164 (900)
.+|++++.+.|.. ..++..+|.+|... |++++|+..|++++.+.|.. ...+..+|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999987643 45799999999996 99999999999999998754 45788999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHH--HcC
Q 045355 165 VEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAY-----KEQEVSLLV--KIG 237 (900)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~-----~~~la~~~~--~~g 237 (900)
+ ..|.+++...+......+....+++.+|.++...|++++|+..|++++.++|+.... +..++..+. ..+
T Consensus 178 ~---~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 178 S---DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp H---HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred H---HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9 555566665443222112334578899999999999999999999999999876543 344555554 457
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 238 RLEEAAELYRALLSMNPDNYSYYEGLQKC 266 (900)
Q Consensus 238 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 266 (900)
++++|+..|++++.++|.+...+..+-..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 89999999999999988776666555444
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=6.6e-17 Score=170.13 Aligned_cols=196 Identities=12% Similarity=0.014 Sum_probs=168.9
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVC 79 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 79 (900)
|.....++..|..++..|+|++|+..|+++++.+|++ +.+++.+|.++..+|++++|+..|++++...|++ ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4456789999999999999999999999999999999 9999999999999999999999999999998754 678
Q ss_pred HHHHHHHHHh--------ccCHHHHHHHHHHHHhhCCCcHHHH-----------------HHHHHHHHHhcCHHHHHHHH
Q 045355 80 WHVYGLLYRS--------DREYREAIKCYRNALRIDPDNIEIL-----------------RDLSLLQAQMRDLTGFVETR 134 (900)
Q Consensus 80 ~~~lg~~~~~--------~g~~~eAi~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~ 134 (900)
++.+|.++.. .|++++|+..|+++++..|++..+. +.+|.++...|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 9999999999999999999986665 88899999999999999999
Q ss_pred HHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH
Q 045355 135 QQLLTLKPN---HRMNWIGFAVSHHLN----------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE 201 (900)
Q Consensus 135 ~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 201 (900)
++++...|+ .+.+++.+|.++..+ |++++|+. .|.+++...|.. +....+...++.++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~---~~~~~~~~~p~~----~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE---LYERLLQIFPDS----PLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH---HHHHHHHHCTTC----THHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH---HHHHHHHHCCCC----hHHHHHHHHHHHHHHH
Confidence 999999998 457899999999977 89999994 455555544322 3344666677777766
Q ss_pred cCCHHHH
Q 045355 202 CGSFERA 208 (900)
Q Consensus 202 ~g~~~~A 208 (900)
.++++.+
T Consensus 245 ~~~~~~~ 251 (261)
T 3qky_A 245 LTELEGD 251 (261)
T ss_dssp HHHHHTC
T ss_pred HHHhhhh
Confidence 6666543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=2.3e-15 Score=167.79 Aligned_cols=251 Identities=17% Similarity=0.035 Sum_probs=184.7
Q ss_pred CCCCCCh-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHh----CCCHHHHH---------
Q 045355 1 MGASLPS-KDANLFKLIVKSYETKQYKKGLKAADAILKKFP---EHGETLSMKGLTLNC----MDRKSEAY--------- 63 (900)
Q Consensus 1 Mp~~l~~-~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p---~~~~~~~~lg~~~~~----~g~~~eA~--------- 63 (900)
|...+|+ .-...+..-..+...+++++|..+++++.+..+ .+...+...+...++ .+.+..+.
T Consensus 3 ~~~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 3 MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp ---CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 5555654 345666767777889999999999998866432 345555333322221 12221122
Q ss_pred HHHHHHHHcC-CC----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhcCHHHHHH
Q 045355 64 ELVRLGVKND-IK----SHVCWHVYGLLYRSDREYREAIKCYRNALRIDP------DNIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 64 ~~~~~al~~~-p~----~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
..+++.-... +. ....++.+|..+...|++++|+.+|++++.+.+ ....++..+|.++..+|+++.|+.
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3444332211 11 123577899999999999999999999998742 245689999999999999999999
Q ss_pred HHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCH
Q 045355 133 TRQQLLTLKPN-------HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSF 205 (900)
Q Consensus 133 ~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 205 (900)
.+++++.+.+. ...++..+|.++...|++++|+..+........... . .+....++..+|.++...|++
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~--~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--N--DRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--C--HHHHHHHHHHHHHHHHHCCCH
Confidence 99999987543 235678999999999999999966555444332211 1 145567899999999999999
Q ss_pred HHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045355 206 ERALAEMHKKES-----KIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 206 ~~Al~~l~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 255 (900)
++|+.++++++. .+|....++..+|.++...|++++|+.+++++++..+.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 78888999999999999999999999999999998543
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=9.2e-18 Score=160.64 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=135.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYR 94 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 94 (900)
.|..+...|++++|+..+++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045355 95 EAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET-RQQLLTLKPNHRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 95 eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (900)
+|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999887776 599999999999999999999888775
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=1.3e-16 Score=177.94 Aligned_cols=236 Identities=16% Similarity=0.120 Sum_probs=196.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CcHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFP------EHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI-------KSHV 78 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-------~~~~ 78 (900)
.|..|..++..|+|++|+..|+++++..+ ..+.+++.+|.++...|++++|+.++++++...+ ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 46688888999999999999999998532 2467899999999999999999999999998633 2356
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCC---C---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCCHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDP---D---NIEILRDLSLLQAQMRDLTGFVETRQQLLT-----LKPNHRMN 147 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p---~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~ 147 (900)
++..+|.+|...|++++|+.+|++++++.+ + ...++..+|.++..+|++++|+..+++++. .+|....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 789999999999999999999999998743 1 245789999999999999999999999999 77878889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCHHH
Q 045355 148 WIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS---FERALAEMHKKESKIVDKLA 224 (900)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~Al~~l~~al~~~p~~~~ 224 (900)
+..+|.++...|++++|+..++. ++.......+ +.....+..++.++...|+ +.+|+..+++ ....|+...
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~---al~~~~~~~~--~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~ 337 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEE---GLDHITARSH--KFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---HHHHCCTTCC--SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHcCC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHH
Confidence 99999999999999999955555 4443322222 3444566788888988998 8888888887 344556677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 225 YKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 225 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
++..+|.+|...|++++|..+|+++++..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999998753
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=2.4e-15 Score=167.05 Aligned_cols=237 Identities=14% Similarity=0.080 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-----VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN------IE 112 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------~~ 112 (900)
.++..+|.++...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.|.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4556667777777777777777777776655432 245667777777777777777777777654332 12
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcc
Q 045355 113 ILRDLSLLQAQMRDLTGFVETRQQLLTLK--------PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNE 184 (900)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~ 184 (900)
++..+|.++...|++++|+..+++++... |.....+..+|.++...|++++|...+.. ++...+....
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~~~~~~- 170 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS---GIEVLSSYQP- 170 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHTTTSCG-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH---HHHHhhccCc-
Confidence 35667777777777777777777777653 22334566677777777777777744433 3332222111
Q ss_pred hhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC--H-HHH--H--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 045355 185 RCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD--K-LAY--K--EQEVSLLVKIGRLEEAAELYRALLSMNPDN- 256 (900)
Q Consensus 185 ~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~--~-~~~--~--~~la~~~~~~g~~~eA~~~~~~al~~~p~~- 256 (900)
+....++..++.++...|++++|+..+++++...+. . ... . ..++.++...|++++|...+++++...|.+
T Consensus 171 -~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 171 -QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp -GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 234467778888888888888888888888765322 1 111 1 134456778888888888888888766543
Q ss_pred ---HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 257 ---YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 257 ---~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
...+..++.++ ...|++++|...++++..
T Consensus 250 ~~~~~~~~~la~~~--------~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 250 HFLQGQWRNIARAQ--------ILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp GGGHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHH
Confidence 12334444444 335666666666655543
No 80
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=1.3e-15 Score=163.02 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=208.6
Q ss_pred HHhhccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 19 SYETKQYK-KGLKAADAILKKFPEHGETLSMKGLTLNCMDR----------KSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 19 ~~~~g~~~-~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....|++. +|+.+++.+|..+|++..+|..++.++...|. +++++.++..++..+|++..+|+..+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567765 79999999999999999999999999988876 68999999999999999999999999999
Q ss_pred HhccC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Q 045355 88 RSDRE--YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD-LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN------ 158 (900)
Q Consensus 88 ~~~g~--~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 158 (900)
...++ +++++.++.++++.+|.|..+|...+.+....|. ++++++++.+++..+|.+..+|..++.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 99994 9999999999999999999999999999999999 69999999999999999999999999999887
Q ss_pred --------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhhc
Q 045355 159 --------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC-----------GSFERALAEMHKKESKI 219 (900)
Q Consensus 159 --------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~Al~~l~~al~~~ 219 (900)
+.+++++ +.+.+++..+ |.+..+|+++..++... +.++++++.++++++..
T Consensus 199 ~~~~~~~~~~~~eEl---e~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 199 GPQGRLPENVLLKEL---ELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp ----CCCHHHHHHHH---HHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchHHHHHHH---HHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4466777 6777777776 56678898777777665 46899999999999999
Q ss_pred CCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 220 VDKLAYKEQEVSLLV---KIGRLEEAAELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 220 p~~~~~~~~la~~~~---~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
|++...+..++.+.. ..|..++....+.++++++|.....|..+...+
T Consensus 269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 998666555554433 357889999999999999999999988877655
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=2.7e-16 Score=159.44 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS 89 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 89 (900)
..++..|..++..|++++|+..|+++++.+|+++.+++..+. ... ....+..+..+|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666555321 000 00012223448888888
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045355 90 DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 169 (900)
.|++++|+.+|+++++++|++..++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+.+.+. ...
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~-~~~ 145 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK-LET 145 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 8999999999999998899888888899999988999999999999999999988888888888887776543322 113
Q ss_pred HHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH
Q 045355 170 AYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL 223 (900)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~ 223 (900)
.+.+++... ....+++.+|.++...|++++|+..|+++++..|+..
T Consensus 146 ~~~~~~~~~--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 146 DYKKLSSPT--------KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHC---CCC--------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHhCCC--------chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 344433211 1224667788888888889999999999998888753
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9e-17 Score=193.04 Aligned_cols=188 Identities=7% Similarity=-0.053 Sum_probs=172.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 37 KKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGV--------KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 37 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
..+|+++.+++..| ...|++++|++.+++++ ..+|++..+|+.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
++..+++.+|.++...|++++|+..|+++++++|++..+|+.+|.++...|++++ + ..|.+++..+ |.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~---~~~~~al~~~-------P~~ 533 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H---KFYQTVWSTN-------DGV 533 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T---CHHHHHHHHC-------TTC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H---HHHHHHHHhC-------Cch
Confidence 9999999999999999999999999999999999999999999999999999999 8 6677777766 566
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCC
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGR 238 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~ 238 (900)
..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 78999999999999999999999999999999999999999999988776
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=1e-15 Score=169.99 Aligned_cols=276 Identities=9% Similarity=-0.009 Sum_probs=216.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------HHH
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHG-----ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------HVC 79 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~ 79 (900)
..+..+..++..|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...+.. ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445677788899999999999999999887653 267889999999999999999999999865433 234
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRID--------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH-----RM 146 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 146 (900)
+..+|.++...|++++|+..|++++.+. |....++..+|.++...|++++|...+++++...+.. ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6789999999999999999999999874 3345678889999999999999999999999987753 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH----
Q 045355 147 NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK---- 222 (900)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~---- 222 (900)
.+..+|.++...|++++|...++......... ..............+.++...|++++|...+++++...+..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 68889999999999999997666655443221 11001111122245566889999999999999998876542
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcC
Q 045355 223 LAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN------YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYT 296 (900)
Q Consensus 223 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p 296 (900)
...+..+|.++...|++++|...+++++...+.. ...+..++.++ ...|+.++|...+++++...+
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~--------~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY--------WQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHHhc
Confidence 3356789999999999999999999998875321 23566667766 457899999999999987654
Q ss_pred c
Q 045355 297 W 297 (900)
Q Consensus 297 ~ 297 (900)
.
T Consensus 325 ~ 325 (373)
T 1hz4_A 325 R 325 (373)
T ss_dssp H
T ss_pred c
Confidence 3
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=1.4e-15 Score=156.26 Aligned_cols=206 Identities=6% Similarity=-0.012 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH---HHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV---CWHV 82 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~ 82 (900)
...++..|..++..|+|++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3578889999999999999999999999998876 478999999999999999999999999999998764 7888
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
+|.++...+.. ....+..++..+...|++++|+..|+++++..|++..++..+..+.
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~------- 140 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV------- 140 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH-------
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH-------
Confidence 99988876632 1223455677777889999999999999999999987664332211
Q ss_pred HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHHcCCH
Q 045355 163 KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL---AYKEQEVSLLVKIGRL 239 (900)
Q Consensus 163 ~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~---~~~~~la~~~~~~g~~ 239 (900)
.+.. ......+.+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|++
T Consensus 141 -------~~~~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 141 -------FLKD-------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp -------HHHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred -------HHHH-------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 1111 1123456789999999999999999999999998864 6899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 045355 240 EEAAELYRALLSMNPDNY 257 (900)
Q Consensus 240 ~eA~~~~~~al~~~p~~~ 257 (900)
++|+..++.+....|++.
T Consensus 201 ~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHhhCCCch
Confidence 999999999999888763
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.1e-15 Score=154.99 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
.....+|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++..
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44556888888888888888888888888888888888888888888888888888888888888888888888888876
Q ss_pred hcC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 124 MRD--LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 124 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
.|+ ...+...+.+++...| ...+++.+|.++...|++++|+ ..|.+++...|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~---~~~~~al~l~P 188 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKAR---NSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHH---HHHHHHTTTSC
T ss_pred HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHH---HHHHHHHHhCC
Confidence 654 4455666666653322 2235677788888888888888 66677777664
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=1.8e-15 Score=148.76 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHHHHh
Q 045355 168 LEAYEG 173 (900)
Q Consensus 168 l~~~~~ 173 (900)
++...+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.69 E-value=1.7e-16 Score=167.69 Aligned_cols=230 Identities=15% Similarity=0.095 Sum_probs=181.4
Q ss_pred hhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKK--------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DIKSHVCWHVYG 84 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg 84 (900)
..|++++|+..|+++++. .|..+.++..+|.++...|++++|+.++++++.. +|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777777773 3566789999999999999999999999999986 466778899999
Q ss_pred HHHHhccCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHH
Q 045355 85 LLYRSDREYREAIKCYRNALRI--------DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL--------KPNHRMNW 148 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 148 (900)
.++...|++++|+.+|++++.+ +|....++..+|.++...|++++|+..+++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999988 4667888999999999999999999999999998 67777889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCC-CCCcchhchhHHHHHHHHHHHHcCC------HHHHHHHHHHHhhhcCC
Q 045355 149 IGFAVSHHLNSNGSKAVEILEAYEGTLEDDY-PPDNERCEHGEMLLYKISLLEECGS------FERALAEMHKKESKIVD 221 (900)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~la~~~~~~g~------~~~Al~~l~~al~~~p~ 221 (900)
..+|.++...|++++|+..++.......... .... +.....+...+..+...+. +..+...+.......|.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN--GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC--SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc--hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999977766554422110 0011 3334566666666655443 45555555555556678
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 222 KLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
...++..+|.+|...|++++|+.+|+++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999875
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=7.9e-16 Score=164.95 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=173.7
Q ss_pred HHHHHHH-HHHhhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------H
Q 045355 11 NLFKLIV-KSYETKQYKKGLKAADAILKKFPE------HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------H 77 (900)
Q Consensus 11 ~l~~~a~-~~~~~g~~~~Al~~~~~~l~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~ 77 (900)
..+..+. .+...|+|++|+..|++++...+. .+.++..+|.+|..+|++++|+.+|++++.+.|.. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455544 555789999999999999997532 25789999999999999999999999999986643 4
Q ss_pred HHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH----
Q 045355 78 VCWHVYGLLYRSD-REYREAIKCYRNALRIDPDN------IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM---- 146 (900)
Q Consensus 78 ~~~~~lg~~~~~~-g~~~eAi~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 146 (900)
.++..+|.+|... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+..|++++.+.|++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5789999999996 99999999999999998754 467899999999999999999999999999987653
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH--HcCCHHHHHHHHHHHhhhcCC
Q 045355 147 ---NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE--ECGSFERALAEMHKKESKIVD 221 (900)
Q Consensus 147 ---~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~Al~~l~~al~~~p~ 221 (900)
.+..+|.++...|++++|+ ..+.+++..+|.... ......+..++..+. ..+++++|+..|++++.++|.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~---~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAA---RTLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH---HHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 5789999999999999999 677777776643221 122234455566554 467899999999999999998
Q ss_pred HHHHHHHHHHHH
Q 045355 222 KLAYKEQEVSLL 233 (900)
Q Consensus 222 ~~~~~~~la~~~ 233 (900)
...++..+-..+
T Consensus 273 ~~~~~~~~k~~~ 284 (292)
T 1qqe_A 273 KITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 877766555444
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=4.9e-13 Score=157.85 Aligned_cols=438 Identities=11% Similarity=0.061 Sum_probs=289.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCC--CcHHHHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR---KSEAYELVRLGVKNDI--KSHVCWHVYGLLY 87 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p--~~~~~~~~lg~~~ 87 (900)
...+......+.++.+..+|++++..+|.....|...+......|. ++.+..+|++++...| .+...|..+....
T Consensus 70 ~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~ 149 (679)
T 4e6h_A 70 VKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYV 149 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3444444456889999999999999999999999888888888888 9999999999999873 5777888877766
Q ss_pred HhccCH--------HHHHHHHHHHHhh----CCCcHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHHhCCCC-H
Q 045355 88 RSDREY--------REAIKCYRNALRI----DPDNIEILRDLSLLQA---------QMRDLTGFVETRQQLLTLKPNH-R 145 (900)
Q Consensus 88 ~~~g~~--------~eAi~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~-~ 145 (900)
...++. +.....|++|+.. ++....+|........ ..++.+.+..+|++++.+ |.. .
T Consensus 150 ~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~ 228 (679)
T 4e6h_A 150 RKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCL 228 (679)
T ss_dssp HHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHH
Confidence 555443 3344778888763 6667777777665543 345677888899999864 432 2
Q ss_pred -HHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhh---hccCCCC-------------CcchhchhHHHHHH
Q 045355 146 -MNWIGFAVSHH-------------LNSNGSKAVEILEAYEGT---LEDDYPP-------------DNERCEHGEMLLYK 195 (900)
Q Consensus 146 -~~~~~la~~~~-------------~~g~~~~A~~~l~~~~~~---l~~~~~~-------------~~~~~~~~~~~~~l 195 (900)
..|..+...-. ...+|..|...+..+... +....+. ..........|...
T Consensus 229 ~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y 308 (679)
T 4e6h_A 229 ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW 308 (679)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHH
Confidence 23322221111 112344444433333222 2111000 00001223444444
Q ss_pred HHHHHHcC-------CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHh
Q 045355 196 ISLLEECG-------SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAA-ELYRALLSMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 196 a~~~~~~g-------~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~p~~~~~~~~l~~~~ 267 (900)
.......+ ........|++++...|..+.+|...+..+...|+.++|. .+|++++...|.+...|..++.+.
T Consensus 309 i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 309 IRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 43333222 1345678899999999999999999999999999999997 999999999999998888888876
Q ss_pred cccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChH
Q 045355 268 GLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKA 347 (900)
Q Consensus 268 ~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~ 347 (900)
...|++++|..+|++++...|...... ....|.. .
T Consensus 389 --------e~~~~~e~aR~iyek~l~~l~~~~~~~------------------------~~~~p~~-------------~ 423 (679)
T 4e6h_A 389 --------ELNTKIPEIETTILSCIDRIHLDLAAL------------------------MEDDPTN-------------E 423 (679)
T ss_dssp --------HHTTCHHHHHHHHHHHHHHHHHHHHHH------------------------HHHSTTC-------------H
T ss_pred --------HHhCCHHHHHHHHHHHHHHHHHHhhhh------------------------hhccCcc-------------h
Confidence 346889999999999876532111000 0000000 0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHH
Q 045355 348 DILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH-TPTVIDLYSVKSRILKH 426 (900)
Q Consensus 348 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~-~P~~~~~~~~la~i~~~ 426 (900)
..+..... .... +|...+....+.|+.+.|..+|.+|++. .+....+|...|.+..+
T Consensus 424 ----~~~~~~~~----------------~~~~--vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 424 ----SAINQLKS----------------KLTY--VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp ----HHHHHHHH----------------HHHH--HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred ----hhhhhhcc----------------chHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 00000000 0011 3455667777788899999999999987 44556788888887777
Q ss_pred cCC-HHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCC
Q 045355 427 AGD-LAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGD 505 (900)
Q Consensus 427 ~G~-~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~ 505 (900)
.|+ ++.|..+|+.+++..|.++.++...+.+....|+.+.|..++........+.. ....+|. .....-...|+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---~~~~lw~--~~~~fE~~~G~ 556 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---LLKMIFQ--KVIFFESKVGS 556 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---HHHHHHH--HHHHHHHHTCC
T ss_pred hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---HHHHHHH--HHHHHHHHcCC
Confidence 654 89999999999999998887777777788888999999988887766322111 1222333 33445556799
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 045355 506 LGRALKKFLAVEKHYADI 523 (900)
Q Consensus 506 ~~~Alk~~~~v~~~~~~~ 523 (900)
.+.+.+.+.++...|++-
T Consensus 557 ~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999998864
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.68 E-value=1.4e-15 Score=149.57 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcC
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECG 203 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 203 (900)
.|++++|+..+++++...|.+.. ++..+|.++...|
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------------~~~~~a~~~~~~~ 124 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFN--------------------------------------------VRFRLGVALDNLG 124 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHH--------------------------------------------HHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhcCcHhHH--------------------------------------------HHHHHHHHHHHcC
Confidence 55555555555555555554444 4455555555555
Q ss_pred CHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045355 204 SFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN 256 (900)
Q Consensus 204 ~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 256 (900)
++++|+..+++++...|++..++..+|.++...|++++|..+++++++.+|++
T Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 55555555555555666666666666666666677777777766666666554
No 91
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=2.1e-16 Score=173.45 Aligned_cols=289 Identities=11% Similarity=0.051 Sum_probs=134.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHH
Q 045355 52 TLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFV 131 (900)
Q Consensus 52 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 131 (900)
+....|+.++|.+++++. +.+.+|..+|..+...|++++|+++|.++ +++..+..++..+...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344667788888888876 23358888888888888888888888653 45567788888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHH
Q 045355 132 ETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAE 211 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~ 211 (900)
.+++.+.+..++ +.....++.+|.+.|++.++.+.+. . | +..+|..+|..+...|+|++|..+
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~--------~-------p-n~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN--------G-------P-NNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------C-------C-----------------CTTTHHHH
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc--------C-------C-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888877775333 5667778888888888888763321 1 1 124888888889999999999998
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHH
Q 045355 212 MHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSL 291 (900)
Q Consensus 212 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 291 (900)
|.++ ..|..+|.++.++|++++|++.|+++ .++..|..+..++ ...|+++.|......+
T Consensus 145 Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aC--------v~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 145 YNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC--------VDGKEFRLAQMCGLHI 203 (449)
T ss_dssp HHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH--------HHTTCHHHHHHTTTTT
T ss_pred HHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHH--------HHcCcHHHHHHHHHHH
Confidence 8876 46778899999999999999999988 4677777766655 3356666663222110
Q ss_pred HHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCC
Q 045355 292 AQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGRE 371 (900)
Q Consensus 292 ~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 371 (900)
T Consensus 204 -------------------------------------------------------------------------------- 203 (449)
T 1b89_A 204 -------------------------------------------------------------------------------- 203 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCc----
Q 045355 372 EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKH--AGDLAAAATLADEARCMDL---- 445 (900)
Q Consensus 372 ~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~--~G~~~eA~~~~~~al~ldp---- 445 (900)
. ..|+. ...+...|.+.|++++|+.++++++..++....++..+|.+|.+ .|+..+.++.|...+.+.|
T Consensus 204 ~-~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 204 V-VHADE----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp T-TCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred H-hCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 0 00111 12355677899999999999999999999999999999999875 5788899999998888888
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 045355 446 -ADRYVNSECVKRMLQADQVSLAEKTAAL 473 (900)
Q Consensus 446 -~d~~l~~~~a~~~l~~g~~eeA~~~~~~ 473 (900)
.+..++..++.++...++++.|..++..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 8889999999999999999999887643
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=5.2e-15 Score=157.63 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH----HHh---cCH
Q 045355 57 DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR--EYREAIKCYRNALRIDPDNIEILRDLSLLQ----AQM---RDL 127 (900)
Q Consensus 57 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eAi~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~ 127 (900)
...++|+.++.++|.++|++..+|+..|.++...| ++++++.++..++..+|++..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34479999999999999999999999999999999 999999999999999999999999999998 666 799
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC-
Q 045355 128 TGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS--KAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS- 204 (900)
Q Consensus 128 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 204 (900)
++++..+.+++..+|.+..+|...+.++...|.++ +++ +.+.+.+..+ +.+..+|.+++.++...|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL---~~~~~~i~~d-------~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKEL---SFVDKVIDTD-------LKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHH---HHHHHHHHhC-------CCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999988 887 5666677766 5566899999999999987
Q ss_pred -----HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHhcccccCCC
Q 045355 205 -----FERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEE-AAELYRALLSMN---PDNYSYYEGLQKCLGLYRDNGN 275 (900)
Q Consensus 205 -----~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~l~~~~~l~~~~~~ 275 (900)
++++++++.+++..+|.+..+|..++.++...|+..+ ....+.+++..+ |.++.++..++.++
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~-------- 268 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY-------- 268 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH--------
T ss_pred chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH--------
Confidence 9999999999999999999999999999999999655 456777777776 88999999999998
Q ss_pred CCCCcHHHHHHHHHHHHH-hcCcchhh
Q 045355 276 YSSGEIDELDALYKSLAQ-QYTWSSAV 301 (900)
Q Consensus 276 ~~~~~~~~A~~~~~~~~~-~~p~~~~~ 301 (900)
...|+.++|+++|+.+.+ .+|-...+
T Consensus 269 ~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HccCCHHHHHHHHHHHHhccChHHHHH
Confidence 346899999999999987 57765544
No 93
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=1.2e-14 Score=156.27 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETK-QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD-RKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g-~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
++-..++.........+ ..++|+.+++++|..+|++..+|..++.++...| .+++++.++.+++..+|++..+|+..+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44445555555555554 4478999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHhc-c-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 85 LLYRSD-R-EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT--------GFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 85 ~~~~~~-g-~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
.++... + ++++++.++.++++.+|.|..+|...+.+....|.++ ++++.+.++++.+|.+..+|..++.+
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999988 8 9999999999999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHcCC-------HHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCH--------------------HH
Q 045355 155 HHLNSN-------GSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSF--------------------ER 207 (900)
Q Consensus 155 ~~~~g~-------~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------------------~~ 207 (900)
+...+. +++++ +.+.+++..+ |.+..+|.++..++...|+. ..
T Consensus 211 L~~l~~~~~~~~~~~eEL---e~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDEL---IYILKSIHLI-------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp HTTSTTCCCCHHHHHHHH---HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred HHhccccccchHHHHHHH---HHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 999886 56666 6677777766 56678999998888887764 22
Q ss_pred HHHHHHHHhhhc------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Q 045355 208 ALAEMHKKESKI------VDKLAYKEQEVSLLVKIGRLEEAAELYRALL-SMNPDNYSYYEGLQKCL 267 (900)
Q Consensus 208 Al~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~l~~~~ 267 (900)
..+......... +.++.++..++++|...|+.++|.++|+.+. +.+|-...+|.-.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 333333333322 4678899999999999999999999999997 66898888887765543
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=5.8e-16 Score=143.14 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=99.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 35 ILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 35 ~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
+..++|+.++++..+|..++..|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++++|++..++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34467888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
..+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888888888888888888888888887777654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.66 E-value=1.7e-16 Score=151.73 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=132.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCH
Q 045355 48 MKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDL 127 (900)
Q Consensus 48 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 127 (900)
.+|.++...|++++|+..+++++..+|+++..++.+|.+|...|+|++|+.+|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC
Q 045355 128 TGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA-YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS 204 (900)
Q Consensus 128 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 204 (900)
++|+..|+++++++|+++.+|+.+|.++...|++++|. .. ++++++.+ |.++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa---~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA---KYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH---HHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH---HHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999998876 33 35677766 5667888889999888775
No 96
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=9.1e-16 Score=168.35 Aligned_cols=378 Identities=12% Similarity=0.062 Sum_probs=142.1
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYR 101 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~ 101 (900)
.|+.++|..++++. +++++|..+|.++...|++++|++.|.++ .++..|...+..+...|+|++|+.+++
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35566666666665 23346666666666666666666666542 234456666666666666666666666
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPP 181 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~ 181 (900)
.+++..++ +.+...++.+|.++|++.++.+.++ .|+ ..+|..+|..+...|+|++|...+ .++
T Consensus 86 ~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y---~~a------- 148 (449)
T 1b89_A 86 MARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLY---NNV------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHH---HHT-------
T ss_pred HHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHH---HHh-------
Confidence 66654322 4555556666666666666555443 132 235666666666666666665222 211
Q ss_pred CcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 182 DNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYE 261 (900)
Q Consensus 182 ~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 261 (900)
..|..++.++..+|++++|++.++++ .++..|...+.++...|+++.|..+...++ .+|++ ..
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---l~ 211 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LE 211 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH---HH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh---HH
Confidence 13455566666666666666666655 234555555555555555555554444321 33322 22
Q ss_pred HHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcc--cchHHHHHHHHhHHhh-hhc-----CCCh
Q 045355 262 GLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFL--QGEKFREAAFNYVRPL-LTK-----GVPS 332 (900)
Q Consensus 262 ~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~--~~~~~~~a~~~~~~~~-l~~-----~~p~ 332 (900)
.+..++ ...|.+++++.+++.++...+..... ..++..+. ..++..+.++.|...+ +.+ ..+.
T Consensus 212 ~lv~~Y--------ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 212 ELINYY--------QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHH--------HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred HHHHHH--------HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 333333 23455555555555555554433322 22222222 3455555555554444 333 3455
Q ss_pred hhhchhhhhcCCChHHHHHHHHHHHHHhhcc------------cCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHH
Q 045355 333 LFSDLSPLYDQPGKADILEQLILELEHSIGT------------TGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVAL 400 (900)
Q Consensus 333 ~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~------------~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al 400 (900)
++..+..+|...++.+.+ +..+.+.... ..... -++|.....|. +....++
T Consensus 284 ~w~e~~~ly~~~~e~d~A---~~tm~~h~~~a~~~~~f~~~~~kv~n~------------elyYkai~fyl--~~~p~~l 346 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNA---IITMMNHPTDAWKEGQFKDIITKVANV------------ELYYRAIQFYL--EFKPLLL 346 (449)
T ss_dssp CHHHHHHHHHHTTCHHHH---HHHHHHSTTTTCCHHHHHHHHHHCSST------------HHHHHHHHHHH--HHCGGGH
T ss_pred HHHHHHHHHHhhchHHHH---HHHHHhCChhhhhhHHHHHHHhchhHH------------HHHHHHHHHHH--hcCHHHH
Confidence 566666666555553322 2222111100 01111 14555555553 5666677
Q ss_pred HHHHHHH--HcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 401 SKIDEAI--EHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 401 ~~~~~al--~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
..+..++ .+++ .....++...|+..-...+++.+.. .++..+|..+-.+++...+++.=..-+..+..
T Consensus 347 ~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~lr~si~~~~n 416 (449)
T 1b89_A 347 NDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSIDAYDN 416 (449)
T ss_dssp HHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 7777777 4443 2345566788888888888877664 45678888888999999998876666655543
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=1.3e-15 Score=149.75 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999 7777766665533
Q ss_pred -hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 045355 89 -SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH--RMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 89 -~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 165 (900)
..+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 33444568999999999999999999999999999999999999999999999976 569999999999999999999
Q ss_pred HHHHHHHhhh
Q 045355 166 EILEAYEGTL 175 (900)
Q Consensus 166 ~~l~~~~~~l 175 (900)
..|.+++
T Consensus 165 ---~~y~~al 171 (176)
T 2r5s_A 165 ---SKYRRQL 171 (176)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHH
Confidence 5555544
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.63 E-value=5.4e-15 Score=136.56 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
........+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|++..+|+.+|.+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
+...|++++|+.+|+++++++|++..++..++.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999988763
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.62 E-value=7.1e-14 Score=149.58 Aligned_cols=230 Identities=10% Similarity=0.041 Sum_probs=197.0
Q ss_pred hCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 55 CMDRK-SEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE----------YREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 55 ~~g~~-~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..|.+ ++|+.++.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 45665 489999999999999999999999999988776 7899999999999999999999999999999
Q ss_pred hcC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 124 MRD--LTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSN-GSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 124 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
.|+ +++++..+.+++..+|.+..+|...+.+....|. +++++ +.+.+.+..+ |.+..+|.+++.++.
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel---~~~~~~I~~~-------p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL---AFTDSLITRN-------FSNYSSWHYRSCLLP 190 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHC-------SCCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHH---HHHHHHHHHC-------CCCHHHHHHHHHHHH
Confidence 994 8999999999999999999999999999999998 58888 6667777766 556689999999998
Q ss_pred Hc--------------CCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCC
Q 045355 201 EC--------------GSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI-----------GRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 201 ~~--------------g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA~~~~~~al~~~p~ 255 (900)
.. +.++++++++.+++..+|++..+|..+..++... +.++++++.+.++++.+|+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 77 5689999999999999999999997666555555 4689999999999999999
Q ss_pred CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 256 NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 256 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
+...+..++.+.... -..+..++....+.++.+.+|-..
T Consensus 271 ~~w~l~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 271 NKWCLLTIILLMRAL-----DPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp CHHHHHHHHHHHHHH-----CTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred cchHHHHHHHHHHhh-----cccccHHHHHHHHHHHHHhCcchh
Confidence 976665555443221 124667889999999999998654
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=7.1e-15 Score=156.99 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=157.5
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
+|.....++..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 45666788999999999999999999999999999999999999999999999999999999999999998877778888
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH--RMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 162 (900)
..+...++.++|+..|++++..+|++..+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 889999999999999999999999999999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 045355 163 KAVEILEAYEGTL 175 (900)
Q Consensus 163 ~A~~~l~~~~~~l 175 (900)
+|. ..|++.+
T Consensus 273 ~a~---~~~r~al 282 (287)
T 3qou_A 273 ALA---SXYRRQL 282 (287)
T ss_dssp HHH---HHHHHHH
T ss_pred cHH---HHHHHHH
Confidence 998 5555554
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=8.4e-15 Score=150.35 Aligned_cols=207 Identities=9% Similarity=0.001 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH---HHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIE---ILR 115 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~---~~~ 115 (900)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456778888888888888888888888888777653 57788888888888888888888888888887654 677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHH
Q 045355 116 DLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYK 195 (900)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l 195 (900)
.+|.++...|.. ....+..++.++...|++++|+ ..|.+.+...|... ....+...+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~---~~~~~~l~~~P~~~----~a~~a~~~l 139 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAF---SDFSKLVRGYPNSQ----YTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHH---HHHHHHHTTCTTCT----THHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHH---HHHHHHHHHCcCCh----hHHHHHHHH
Confidence 777777766532 1123445566666678888888 44555555443221 111222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHhccccc
Q 045355 196 ISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNY---SYYEGLQKCLGLYRD 272 (900)
Q Consensus 196 a~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~l~~~ 272 (900)
+.+.. ........+|.+|...|++++|+..|+++++..|+++ .++..++.++
T Consensus 140 ~~~~~--------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~----- 194 (225)
T 2yhc_A 140 VFLKD--------------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY----- 194 (225)
T ss_dssp HHHHH--------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH-----
T ss_pred HHHHH--------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH-----
Confidence 22211 1122346789999999999999999999999999986 6788899988
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhcCcch
Q 045355 273 NGNYSSGEIDELDALYKSLAQQYTWSS 299 (900)
Q Consensus 273 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 299 (900)
...|++++|+..++.+....|.+.
T Consensus 195 ---~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 195 ---RQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHcCCcHHHHHHHHHHHhhCCCch
Confidence 668999999999999998888764
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.62 E-value=2e-15 Score=159.47 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=179.8
Q ss_pred HhCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--------CCCcHHHHHHH
Q 045355 54 NCMDRKSEAYELVRLGVKN--------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI--------DPDNIEILRDL 117 (900)
Q Consensus 54 ~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~l 117 (900)
...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++.+ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888899998888873 3667888999999999999999999999999987 35667789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchh
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTL--------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHG 189 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~ 189 (900)
|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++...+.......+.. +...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC--HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHH
Confidence 99999999999999999999988 4667788999999999999999999776665554322222222 6778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhc---------CCHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCC
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKI---------VDKLAYKEQEVSLLVKIGR------LEEAAELYRALLSMNP 254 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~---------p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~p 254 (900)
.++..+|.++...|++++|+..+++++... +.....+..++..+...+. +.++...++.+....|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999999999999999863 3334466666666665444 3444444444444456
Q ss_pred CCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHh
Q 045355 255 DNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ 294 (900)
Q Consensus 255 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~ 294 (900)
.....+..++.++ ...|++++|..+|+++++.
T Consensus 250 ~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALY--------RRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHh
Confidence 6677888999988 5689999999999998764
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=1.7e-15 Score=144.40 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
-.+-..+++++..+|+++++++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|+|++|+.+|+++++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33445677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 045355 106 IDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR 145 (900)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (900)
++|+++.+++.+|.++..+|++++|+..|++++++.|+..
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999865
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.59 E-value=7.4e-15 Score=144.39 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=144.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
+|...+.+..+|..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4555567889999999999999999999999999999999999999999999999999999999999999 887766666
Q ss_pred HHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHH
Q 045355 119 LLQA-QMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKIS 197 (900)
Q Consensus 119 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 197 (900)
.+.. ..++..+|+..+++++..+|+++.+++.+|.++...|++++|+ ..+.+++..+|. +....++..++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~---~~~~~~l~~~p~-----~~~~~a~~~l~~ 152 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL---ELLWNILKVNLG-----AQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHHTTCTT-----TTTTHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH---HHHHHHHHhCcc-----cChHHHHHHHHH
Confidence 5533 3345556899999999999999999999999999999999999 566667776643 122468889999
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 045355 198 LLEECGSFERALAEMHKKES 217 (900)
Q Consensus 198 ~~~~~g~~~~Al~~l~~al~ 217 (900)
++...|+.++|+..|++++.
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999988764
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=5.6e-14 Score=149.99 Aligned_cols=172 Identities=13% Similarity=0.031 Sum_probs=155.6
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
..|.+.+.+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999877777788
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHH
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKIS 197 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 197 (900)
+..+...++.++|+..+++++..+|++..+++.+|.++...|++++|+ ..+.+++..+|. .....++..++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~---~~l~~~l~~~p~-----~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL---ELLFGHLRXDLT-----AADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHCTT-----GGGGHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH---HHHHHHHhcccc-----cccchHHHHHHH
Confidence 888899999999999999999999999999999999999999999999 566666766532 223678899999
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 045355 198 LLEECGSFERALAEMHKKES 217 (900)
Q Consensus 198 ~~~~~g~~~~Al~~l~~al~ 217 (900)
++...|+.++|...|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999888764
No 106
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.5e-14 Score=150.37 Aligned_cols=201 Identities=10% Similarity=-0.015 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHhccCHHHHHHHHHHHHhhCCCc------------------
Q 045355 56 MDRKSEAYELVRLGVKNDIKSHVCWHVY-------GLLYRSDREYREAIKCYRNALRIDPDN------------------ 110 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~eAi~~~~~al~~~p~~------------------ 110 (900)
.+++.+|...|.+++..+|+..++|..+ +.++...+++.+++..+++++.+.|..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4555555555555555555555555555 455555555555555555555544432
Q ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhc
Q 045355 111 ---IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCE 187 (900)
Q Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~ 187 (900)
..+...++.++...|+|++|.+.|..++...|++. .++.+|.+++..++|++|+..+ ........ . ..
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l---~~a~~~~d---~--~~ 169 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQV---KSAGKWPD---K--FL 169 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHH---TTGGGCSC---H--HH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHH---HHhhccCC---c--cc
Confidence 23455577778888888888888888877778777 7888888888888888888444 34433210 0 11
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 188 HGEMLLYKISLLEECGSFERALAEMHKKESKI--VD-KLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 188 ~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
...+++++|.++..+|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 24688999999999999999999999998543 55 7789999999999999999999999999999999 87777765
Q ss_pred HH
Q 045355 265 KC 266 (900)
Q Consensus 265 ~~ 266 (900)
..
T Consensus 249 ~~ 250 (282)
T 4f3v_A 249 DP 250 (282)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.56 E-value=1.2e-14 Score=138.40 Aligned_cols=121 Identities=12% Similarity=-0.072 Sum_probs=115.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 29 LKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 29 l~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
+++.+++.+|.++..+|++++|+..|++++++.|+++....
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999999999999999998876543
No 108
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=3.3e-11 Score=142.30 Aligned_cols=390 Identities=11% Similarity=0.003 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC---HHHHHHHHH
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE---YREAIKCYR 101 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~eAi~~~~ 101 (900)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|..+.......++ ++.+...|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhhCC--CcHHHHHHHHHHHHHhcCH----HH----HHHHHHHHHHh----CCCCHHHHHHHHHHHHH---------c
Q 045355 102 NALRIDP--DNIEILRDLSLLQAQMRDL----TG----FVETRQQLLTL----KPNHRMNWIGFAVSHHL---------N 158 (900)
Q Consensus 102 ~al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~---------~ 158 (900)
+++...| .+..+|..........++. ++ ....|++++.. +|.....|..+...... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999984 6777888877666665554 33 44778887763 67677788877665442 2
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH-------------cCCHHHHHHHHHHHh------hh-
Q 045355 159 SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE-------------CGSFERALAEMHKKE------SK- 218 (900)
Q Consensus 159 g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~Al~~l~~al------~~- 218 (900)
++.+.+. ..|.+++.. |.. ....+|......-.. ..+|..|...+.... ..
T Consensus 208 ~~~~~~R---~iy~raL~i-P~~-----~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 208 QRVQYIR---KLYKTLLCQ-PMD-----CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp HHHHHHH---HHHHHHTTS-CCS-----SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHH---HHHHHHHhC-ccH-----HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 3344555 445556642 211 111222211111111 112222222222210 00
Q ss_pred c------------C-------CHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccccc
Q 045355 219 I------------V-------DKLAYKEQEVSLLVKIG-------RLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRD 272 (900)
Q Consensus 219 ~------------p-------~~~~~~~~la~~~~~~g-------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~ 272 (900)
. | .....|......-...+ ..+.....|++++...|.++..|...+..+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~----- 353 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQ----- 353 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----
Confidence 0 0 00111221111111100 011223334444444444444444443333
Q ss_pred CCCCCCCcHHHHH-HHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHH
Q 045355 273 NGNYSSGEIDELD-ALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILE 351 (900)
Q Consensus 273 ~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~ 351 (900)
...|+.++|. .+|++++...|.+
T Consensus 354 ---~~~~~~~~a~r~il~rAi~~~P~s----------------------------------------------------- 377 (679)
T 4e6h_A 354 ---GEKNTDSTVITKYLKLGQQCIPNS----------------------------------------------------- 377 (679)
T ss_dssp ---HHHSCCTTHHHHHHHHHHHHCTTC-----------------------------------------------------
T ss_pred ---HhcCcHHHHHHHHHHHHHHhCCCC-----------------------------------------------------
Confidence 1112222232 3333332222211
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----------CCC--------
Q 045355 352 QLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH-----------TPT-------- 412 (900)
Q Consensus 352 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~-----------~P~-------- 412 (900)
.. .++..+......|++++|...|++++.. .|+
T Consensus 378 --------------------------~~--Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 378 --------------------------AV--LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp --------------------------HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred --------------------------HH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 12 3567788888899999999999999975 253
Q ss_pred ---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCChhHHHHHHHHHHHcC-ChHHHHHHHHHhccc-CCcCCChhh
Q 045355 413 ---VIDLYSVKSRILKHAGDLAAAATLADEARCM-DLADRYVNSECVKRMLQAD-QVSLAEKTAALFTKD-GDQHNNLHD 486 (900)
Q Consensus 413 ---~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-dp~d~~l~~~~a~~~l~~g-~~eeA~~~~~~~~~~-~~~~~~l~~ 486 (900)
...+|...+++..+.|+.+.|...|.+|++. .+....+....+.+..+.+ +.+.|.+++....+. +.. .
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~---- 504 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD-G---- 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-H----
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-h----
Confidence 4568999999999999999999999999998 4333445555565555654 589999998877763 221 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 045355 487 MQCMWYELASGESYFRQGDLGRALKKFLAVEKHYA 521 (900)
Q Consensus 487 ~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~ 521 (900)
.+| ...++.....|+...|...|+.++...+
T Consensus 505 --~~w--~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 505 --EYI--NKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp --HHH--HHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred --HHH--HHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 123 3667777888999999999999887765
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=1.9e-14 Score=153.17 Aligned_cols=199 Identities=17% Similarity=0.155 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|.++..+..+|..+...|++++|+..|++++..+|.+..+|..+|.+|...|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
++..+|++++|+..|++++.++|++...+...+.......+..... . ... .. . +....+...++.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~---~-~~~--~~-~------~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN---S-IEE--RR-I------HQESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH---H-HHH--TC-C------CCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHH---H-HHH--HH-H------hhhHHHHHHHHHHH
Confidence 9999999999999999999988866422211111111111111111 1 111 11 1 22234555556554
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 045355 200 EECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKI-GRLEEAAELYRALLSMN 253 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~ 253 (900)
.|++++|++.++++++..|++......++.++... +++++|...|.++.+..
T Consensus 148 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 148 --AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp --HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred --HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 69999999999999999999999888888888777 77899999999887643
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.55 E-value=1.7e-14 Score=149.92 Aligned_cols=214 Identities=9% Similarity=-0.010 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHHcCCCcHH-
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMK-------GLTLNCMDRKSEAYELVRLGVKNDIKSHV- 78 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~l-------g~~~~~~g~~~eA~~~~~~al~~~p~~~~- 78 (900)
+.-..+|..|..+ ..+++..|+..|.+++..+|+.+++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 4556889999986 68999999999999999999999999999 89999999999999999999998776543
Q ss_pred --------------------HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 045355 79 --------------------CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLL 138 (900)
Q Consensus 79 --------------------~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 138 (900)
++..++.++...|+|++|.+.|..++...|++. +++.+|.++.+.++|++|+..++.+.
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 344588999999999999999999999999988 99999999999999999999999776
Q ss_pred HhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045355 139 TLKPNH--RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKE 216 (900)
Q Consensus 139 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al 216 (900)
...+.. ..+++.+|.++..+|++++|+ ..|.+++.....+ ....++++++|.++..+|+.++|...|++++
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl---~~l~~a~~g~~~P----~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAE---RRLTEANDSPAGE----ACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHTSTTTT----TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHH---HHHHHHhcCCCCc----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 643221 358999999999999999999 5566665322101 1256899999999999999999999999999
Q ss_pred hhcCCHHHHHHHHH
Q 045355 217 SKIVDKLAYKEQEV 230 (900)
Q Consensus 217 ~~~p~~~~~~~~la 230 (900)
..+|+ ..+...+.
T Consensus 236 a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 236 TTHPE-PKVAAALK 248 (282)
T ss_dssp HHSCC-HHHHHHHH
T ss_pred hcCCc-HHHHHHHh
Confidence 99999 77766554
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=4.9e-14 Score=166.04 Aligned_cols=155 Identities=11% Similarity=-0.032 Sum_probs=130.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYR 101 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~ 101 (900)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhhccC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN---SNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~~~~~~l~~~ 178 (900)
++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..++.++... |++++|. ..+.+++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~---~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS---AQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH---HHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH---HHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999 9999999 5566666665
Q ss_pred C
Q 045355 179 Y 179 (900)
Q Consensus 179 ~ 179 (900)
+
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.53 E-value=2.3e-14 Score=135.37 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=112.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 30 KAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 30 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 110 NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
++.+++.+|.++..+|++++|+..|++++.+.|+++..+.....+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999888765554443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.52 E-value=1.9e-13 Score=147.52 Aligned_cols=207 Identities=11% Similarity=0.062 Sum_probs=163.9
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNC-MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKC 99 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~ 99 (900)
..|++++|..+++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4689999999999998876642 122 58899999988876 5678889999999999
Q ss_pred HHHHHhhCCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 045355 100 YRNALRIDPDN------IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN--H----RMNWIGFAVSHHLNSNGSKAVEI 167 (900)
Q Consensus 100 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 167 (900)
|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++.+.+. + ..++..+|.+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99999876432 457889999999999999999999999987432 2 3568889999988 999999955
Q ss_pred HHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHcCCHHH
Q 045355 168 LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDK------LAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~e 241 (900)
++ +++...+.... ......++..+|.++...|++++|+.+|++++...|.. ..++..+|.++..+|++++
T Consensus 138 ~~---~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 138 YQ---QAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HH---HHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HH---HHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 44 44433211111 12346788999999999999999999999999875532 3478889999999999999
Q ss_pred HHHHHHHHHHhCCCCH
Q 045355 242 AAELYRALLSMNPDNY 257 (900)
Q Consensus 242 A~~~~~~al~~~p~~~ 257 (900)
|+.+|++++ .+|+..
T Consensus 214 A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHT-TSTTST
T ss_pred HHHHHHHHh-CCCCCC
Confidence 999999999 998754
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.52 E-value=2.6e-13 Score=145.79 Aligned_cols=237 Identities=12% Similarity=0.064 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR-EYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
.+++..+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++..++..+|++..+|...+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455555556666777789999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHh-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhhccCCCCCcchhchhHH
Q 045355 122 AQM-R-DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS--------KAVEILEAYEGTLEDDYPPDNERCEHGEM 191 (900)
Q Consensus 122 ~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~l~~~~~~l~~~~~~~~~~~~~~~~ 191 (900)
... + +++++++.+.+++..+|.+..+|...+.++...|.++ +++ +.+.+.+..+ +.+..+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL---e~~~k~I~~d-------p~N~SA 203 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL---DWCNEMLRVD-------GRNNSA 203 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH---HHHHHHHHHC-------TTCHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHH---HHHHHHHHhC-------CCCHHH
Confidence 998 8 9999999999999999999999999999999888777 666 6666777766 556689
Q ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCH--------------------HHHHH
Q 045355 192 LLYKISLLEECGS-------FERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRL--------------------EEAAE 244 (900)
Q Consensus 192 ~~~la~~~~~~g~-------~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~eA~~ 244 (900)
|.+++.++...+. ++++++++.+++..+|++..+|..+..++...|+. .+-..
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEA 283 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHH
Confidence 9999999999987 79999999999999999999999999999888764 22223
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHh-cCc
Q 045355 245 LYRALLSMN------PDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQ-YTW 297 (900)
Q Consensus 245 ~~~~al~~~------p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~-~p~ 297 (900)
....++... +.++.++..++.++ ...|+.++|..+|+.+.+. +|-
T Consensus 284 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~--------~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 284 FGFPMPSDPLPEDTPLPVPLALEYLADSF--------IEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp --CCCCC-CCCSSCCSCCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcccccccCCCcHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHhhhChH
Confidence 333333222 56778888888887 3467889999999998744 453
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=6.7e-13 Score=122.43 Aligned_cols=133 Identities=24% Similarity=0.315 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN 143 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (900)
|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888888888888888888888888888888888888775
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=1.6e-13 Score=161.70 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 045355 56 MDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135 (900)
Q Consensus 56 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (900)
.|++++|+..++++++.+|++..+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 136 QLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 136 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
++++.+|++..++..+|.++...|++++ |+..|+++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~--------------------------------------------A~~~~~~a 117 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEA--------------------------------------------AAAAYTRA 117 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHH--------------------------------------------HHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHH--------------------------------------------HHHHHHHH
Confidence 7777666665555555555555555544 44555555
Q ss_pred hhhcCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 216 ESKIVDKLAYKEQEVSLLVKI---GRLEEAAELYRALLSMNPDNYSYYEGLQ 264 (900)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~l~ 264 (900)
++..|++..++..+|.++... |++++|...|+++++.+|++...+..++
T Consensus 118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 555565566666666666666 6666666666666666666655555544
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.50 E-value=3.4e-13 Score=128.41 Aligned_cols=106 Identities=7% Similarity=-0.037 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|.....++..|..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+|+.+|.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~ 111 (900)
+|...|++++|+.+|++++++.|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999875
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8e-13 Score=121.62 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|++..+|+.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRID------PDNIEILRDLSLLQ 121 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~------p~~~~~~~~la~~~ 121 (900)
...|++++|+.+|+++++++ |++..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 66666666666666666666 55555555555544
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5e-13 Score=123.00 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSL 119 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~ 119 (900)
|..++.+..+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 045355 120 LQAQMRDLTGFVETRQQLLTLK------PNHRMNWIGFAVSHHL 157 (900)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 157 (900)
++..+|++++|+..|++++.++ |++..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 8888888877766543
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.48 E-value=5.3e-14 Score=153.78 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=137.9
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHH
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---------------HVCWHVYGL 85 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~lg~ 85 (900)
..+++++|+..+++++...|+++.++..+|.+++..|++++|+..|++++..+|.+ ..+|..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888899999999999999999999999999999999999998 589999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
+|...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.47 E-value=1.4e-12 Score=140.54 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHh------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------
Q 045355 9 DANLFKLIVKSYE------TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------ 76 (900)
Q Consensus 9 ~~~l~~~a~~~~~------~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------ 76 (900)
...++.++..... .+++++|+..|.++ |.++...|++++|+..|.+++.+.+..
T Consensus 10 A~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 75 (307)
T 2ifu_A 10 AHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA 75 (307)
T ss_dssp HHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455666665443 47888888888775 668889999999999999999875432
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Q 045355 77 HVCWHVYGLLYRSDREYREAIKCYRNALRIDPD------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH------ 144 (900)
Q Consensus 77 ~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 144 (900)
..++..+|.+|...|++++|+.+|++++.+.+. ...++..+|.+|.. |++++|+..|++++.+.|..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 457899999999999999999999999988532 24578999999999 99999999999999987643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH-
Q 045355 145 RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL- 223 (900)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~- 223 (900)
..++..+|.++..+|++++|+..++.......... . .+....+++.++.++...|++++|+..|++++ ..|...
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME---N-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---C-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 46788999999999999999965555444332221 1 13345688889999999999999999999999 888532
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHH
Q 045355 224 ----AYKEQEVSLLVKIGRLEEAAE 244 (900)
Q Consensus 224 ----~~~~~la~~~~~~g~~~eA~~ 244 (900)
.....++..+ ..|+.+.+..
T Consensus 230 ~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 230 SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2344445444 5566544433
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=1.3e-12 Score=132.20 Aligned_cols=135 Identities=22% Similarity=0.257 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|+|++|+..|++++ .| ++.+++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3567899999999999999999999985 33 78999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 89 SDREYREAIKCYRNALRIDPDNI----------------EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+..+++++...|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999888766 99999999999999999999999999999998744
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=3.2e-13 Score=132.49 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=122.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHhccCH
Q 045355 15 LIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL-YRSDREY 93 (900)
Q Consensus 15 ~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~ 93 (900)
.+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 334456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred --HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 045355 94 --REAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 94 --~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (900)
++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999866443
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.46 E-value=3.3e-13 Score=143.47 Aligned_cols=197 Identities=10% Similarity=0.018 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
.....++..|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
+...|++++|+..|+++++++|++...+......... ...+...........|.+......++..+ .|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~- 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL- 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH-
Confidence 9999999999999999999998764332222222221 12222223333345677777766666654 68999998
Q ss_pred HHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh
Q 045355 167 ILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC-GSFERALAEMHKKESK 218 (900)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~Al~~l~~al~~ 218 (900)
+.+.+++..+ |........++.++... +.+++|...|.++.+.
T Consensus 156 --~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 --EECQRNHEGH-------EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp --TTTSGGGTTT-------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred --HHHHhhhccc-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6777777765 34445555666666665 7788899999887664
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=3.5e-12 Score=122.96 Aligned_cols=127 Identities=10% Similarity=0.102 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..+|+.+|.++...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHH--HHHHHhcCHHHHHHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLS--LLQAQMRDLTGFVETRQQL 137 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~a 137 (900)
|++++|+.+|++++..+|.+..++..++ ..+...|++++|+..+.+.
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555555554442222 2244445555555554443
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.45 E-value=4.2e-12 Score=128.77 Aligned_cols=178 Identities=9% Similarity=-0.059 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc----CHHHHHHHHHH
Q 045355 61 EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR----DLTGFVETRQQ 136 (900)
Q Consensus 61 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 136 (900)
+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+..|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 355555555553 45556666666666666666666666666543 355666666666655 4 56666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHH----cCCHHHH
Q 045355 137 LLTLKPNHRMNWIGFAVSHHL----NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEE----CGSFERA 208 (900)
Q Consensus 137 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 208 (900)
+.. ++++.+++.+|.+|.. .+++++|+ ..|.++....+. ...+.+++.+|.+|.. .+++++|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~---~~~~~A~~~~~~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAI---TLLQDAARDSES-----DAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHH---HHHHHHTSSTTS-----HHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHH---HHHHHHHHcCCC-----cchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 633 4556666666666665 56666666 445555544310 0235677778888877 7788888
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 045355 209 LAEMHKKESKIVDKLAYKEQEVSLLVKI-G-----RLEEAAELYRALLSMNP 254 (900)
Q Consensus 209 l~~l~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p 254 (900)
+.+|+++.+. +.++.+++.+|.+|... | ++++|+.+|+++++...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888888877 55666788888888764 3 78888888888888753
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=2e-12 Score=119.34 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+.++++++..+|.+..+|+.+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
...|++++|+.+|++++..+|.+..++..++.++..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 55555555555555555555554445555554444433
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=119.86 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
.|.++.+++.+|.++...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|+++++.+|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045355 119 LLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (900)
.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999987764
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=4.6e-12 Score=116.72 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
++++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 124 MRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
.|++++|+..+++++...|.+...+..+|.++...|++++|...+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999955444
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=2.4e-13 Score=158.54 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=159.7
Q ss_pred HHhhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 19 SYETKQY-KKGLKAADAILKKFPEHGETLSMKGLTLNCMDR----------KSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 19 ~~~~g~~-~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....|++ ++|+..+++++..+|++..+|+.++.++...|+ +++++.++++++..+|++..+|+..+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3345554 578999999999999999999999999999998 99999999999999999999999999999
Q ss_pred Hhcc--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Q 045355 88 RSDR--EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR-DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN------ 158 (900)
Q Consensus 88 ~~~g--~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 158 (900)
...+ ++++++.++.++++.+|.|..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred --------CCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHH
Q 045355 159 --------SNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFER 207 (900)
Q Consensus 159 --------g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 207 (900)
+.+++++ +.+.+++..+ |++..+|++++.++...+++++
T Consensus 198 ~~~~~~~~~~~~eel---~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKEL---ELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHH---HHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHH---HHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 4467776 6666777766 4556788888888877776544
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.43 E-value=1.3e-12 Score=126.48 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLS 118 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la 118 (900)
.+.++..++.+|.++...|++++|+.+|++++..+|.+..+|+.+|.+|...|++++|+.+|+++++++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045355 119 LLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHH 156 (900)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (900)
.++..+|++++|+..|++++.++|++...|+..+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 88888888888888888888888888887766665443
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.42 E-value=4.9e-12 Score=121.88 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
+..+..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhh
Q 045355 123 QMRDLTGFVETRQQLLTLKPNHRMNWIGFA--VSHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~l~~~~~~l 175 (900)
..|++++|+..+++++...|++...+..++ ..+...|++++|+..+.......
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999885544 44888899999997766655443
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.42 E-value=1.5e-12 Score=122.71 Aligned_cols=118 Identities=11% Similarity=-0.029 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
|.....++..|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+|+++.+|+.+|.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
++...|++++|+.+|+++++++|+++........+...
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999887665554444433
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=5.6e-12 Score=127.85 Aligned_cols=178 Identities=10% Similarity=-0.031 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc----CHHHHHHHHH
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR----EYREAIKCYR 101 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~eAi~~~~ 101 (900)
.+|+..|+++.+. .++.+++.+|.++...+++++|+.+|++++.. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888764 78999999999999999999999999999875 578899999999998 7 9999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 045355 102 NALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKP--NHRMNWIGFAVSHHL----NSNGSKAVEILEAY 171 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~l~~~ 171 (900)
++.+ +.++.+++.+|.+|.. .+++++|+..|+++....| +++.+++.+|.+|.. .+++++|+ ..|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~---~~~ 152 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS---EYF 152 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH---HHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH---HHH
Confidence 9965 5789999999999988 8999999999999999887 458999999999999 88999999 556
Q ss_pred HhhhccCCCCCcchhchhHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhhcCC
Q 045355 172 EGTLEDDYPPDNERCEHGEMLLYKISLLEEC-G-----SFERALAEMHKKESKIVD 221 (900)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~Al~~l~~al~~~p~ 221 (900)
.++.... .+..+++.+|.+|... | ++++|+.+|+++.+....
T Consensus 153 ~~A~~~~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLS--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTS--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcC--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 6666541 2236889999999865 3 899999999999887543
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=2.4e-12 Score=118.22 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
++.++..+|.++...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|++++..+|++..++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (900)
...|++++|+..+++++...|++..++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555544443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=4.9e-12 Score=116.08 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLL 86 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 86 (900)
.....++..|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDL 127 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 127 (900)
+...|++++|+.+|+++++.+|++..++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999876
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.40 E-value=3.1e-12 Score=121.61 Aligned_cols=113 Identities=7% Similarity=-0.113 Sum_probs=105.4
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 045355 63 YELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP 142 (900)
Q Consensus 63 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 142 (900)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC
Q 045355 143 NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 143 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~ 178 (900)
+++.+++.+|.++...|++++|+. .|.+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~ 119 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAES---GLFLAQELI 119 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHH---HHHHHHHHC
Confidence 999999999999999999999994 455555544
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.40 E-value=3.9e-12 Score=123.08 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
+.....++..|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
++...|++++|+.+|+++++++|++..++..++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999887666665443
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=5.6e-12 Score=137.65 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---------------GETLSMKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
....++..|..++..|+|++|+..|++++..+|++ ..++..+|.++..+|++++|+.+|++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHH-HHHHHHHHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF-VETRQQLLT 139 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 139 (900)
+|++..+|+.+|.+|...|++++|+.+|+++++++|++..++..++.++..+|++++| ...|.+++.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 557777764
No 140
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=2.3e-11 Score=128.10 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=153.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHH---------HHHH------------HHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEH-GETLSMKGLTLNCMDRKS---------EAYE------------LVRLGV 70 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~---------eA~~------------~~~~al 70 (900)
+-.+...|-.|+|..++.-..+ ..|.+ -...+.+.+++..+|++. .|+. .+++.+
T Consensus 17 lf~ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~ 93 (310)
T 3mv2_B 17 YFNIKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLL 93 (310)
T ss_dssp THHHHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3366778889999999884433 33433 345566667777777653 2333 344444
Q ss_pred HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----C
Q 045355 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP--DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN----H 144 (900)
Q Consensus 71 ~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 144 (900)
...+.+...+..+|.++...|++++|++++.+.+..+| ++..++..++.++..+|+.+.|.+.++++.+.+|+ +
T Consensus 94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 44344555667888888888888888888888887776 77788888888888888888888888888888773 2
Q ss_pred HHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--
Q 045355 145 RMNWIGF--AVSHHLNS--NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK-- 218 (900)
Q Consensus 145 ~~~~~~l--a~~~~~~g--~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~-- 218 (900)
...+..+ +.+....| ++.+|..+++. .....+ . +.....++. ++..+|++++|...++.+++.
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~E---l~~~~p--~---~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEE---LSQTFP--T---WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHH---HHTTSC--S---HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHH---HHHhCC--C---cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Confidence 2333333 33355445 78888744444 333221 0 011223333 778888888888888876665
Q ss_pred --------cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045355 219 --------IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSY 259 (900)
Q Consensus 219 --------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 259 (900)
+|+++.++.+++.+...+|+ +|.++++++.+.+|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 47788888777777777886 7788888888888888754
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=1.1e-12 Score=152.98 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=167.7
Q ss_pred hCCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 55 CMDR-KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE----------YREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 55 ~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..|+ .++|+..+.+++..+|++..+|+..+.++...|+ +++++.++.++++.+|++..+|...+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444 4788999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHH
Q 045355 124 MR--DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS-NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE 200 (900)
Q Consensus 124 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 200 (900)
+| +++++++.+.++++.+|.+..+|...+.+....| .+++++ +.+.+++..+ |.+..+|.+++.++.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el---~~~~~~I~~~-------p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL---AFTDSLITRN-------FSNYSSWHYRSCLLP 189 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH---HHHHTTTTTT-------CCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH---HHHHHHHHHC-------CCCccHHHHHHHHHH
Confidence 99 7799999999999999999999999999999999 898888 7778888876 566789999999988
Q ss_pred Hc--------------CCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCC
Q 045355 201 EC--------------GSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEE------------AAELYRALLSMNP 254 (900)
Q Consensus 201 ~~--------------g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~~~~al~~~p 254 (900)
.. +.++++++.+.+++..+|++..+|..++.++...+++++ |+..|.+++..+|
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 75 557888888888888888888888888888888887665 4455666666666
Q ss_pred C
Q 045355 255 D 255 (900)
Q Consensus 255 ~ 255 (900)
.
T Consensus 270 ~ 270 (567)
T 1dce_A 270 R 270 (567)
T ss_dssp T
T ss_pred c
Confidence 4
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.38 E-value=7.4e-13 Score=132.67 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=124.9
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH----------------HHHHH
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH----------------VCWHV 82 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~ 82 (900)
....|.++++...++......+..+..+..+|.+++..|++++|+..|++++...|.++ .+|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34457777777777766666677788899999999999999999999999999888877 88999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGS 162 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (900)
+|.++...|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++..
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HHH
Q 045355 163 KAV 165 (900)
Q Consensus 163 ~A~ 165 (900)
++.
T Consensus 174 ~~~ 176 (198)
T 2fbn_A 174 KKD 176 (198)
T ss_dssp C--
T ss_pred HHH
Confidence 665
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.5e-11 Score=111.74 Aligned_cols=120 Identities=24% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 39 FPEH-GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 39 ~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
+|.. +.+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3444 566777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLN 158 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (900)
|.++...|++++|+..+++++...|++..++..++.++...
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777666544
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.37 E-value=5.9e-12 Score=117.34 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=91.7
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
.+|.++..++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPN-----HRMNWIGFAVSH 155 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 155 (900)
|.++...|++++|+..|++++.+.|+ +...+..+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887776 445554444443
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=4e-13 Score=153.27 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=133.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---------------HVCWHVYGLL 86 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~lg~~ 86 (900)
.+++++|+..++.++...|+.+.++..+|.+++..|++++|+..|++++..+|.+ ..+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888899999999999999999999999999999999999988 6899999999
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVE 166 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (900)
|..+|+|++|+.+|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
No 146
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.36 E-value=9.5e-10 Score=126.09 Aligned_cols=390 Identities=9% Similarity=-0.014 Sum_probs=244.1
Q ss_pred hc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC-HHHHHHH
Q 045355 22 TK-QYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE-YREAIKC 99 (900)
Q Consensus 22 ~g-~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAi~~ 99 (900)
.| +...|..+|++++...|. |+++.+..+|++++...| +...|..+.......+. .+.....
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 478889999999988887 789999999999999888 77788888877776663 4556778
Q ss_pred HHHHHhh---CCCcHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 100 YRNALRI---DPDNIEILRDLSLLQA----QMRDLTGFVETRQQLLTLKPNHRMN-WIGFAVSHHLNSNGSKAVEILEAY 171 (900)
Q Consensus 100 ~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~l~~~ 171 (900)
|+.++.. +|.+..+|...+..+. ..|+.+.+...|++++..-+.+... |...... ....+...+..++...
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH
Confidence 8888875 6778888888887654 4577888999999999853333322 2222111 1111222222221111
Q ss_pred HhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHc--CC-----HHHHH
Q 045355 172 EGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVD-KLAYKEQEVSLLVKI--GR-----LEEAA 243 (900)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~-~~~~~~~la~~~~~~--g~-----~~eA~ 243 (900)
.+.+..|...++.+....+. +...|......-... |- .+...
T Consensus 150 ------------------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 150 ------------------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 12233344444444333221 233444443332221 10 34567
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHH
Q 045355 244 ELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVR 323 (900)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~ 323 (900)
..|++++...|..+..|...+..+ ...|+.+.|..+|++++.. |.+.........+...+.. ..
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~--------~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~---~~---- 263 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYL--------IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV---YG---- 263 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH---HH----
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH---HH----
Confidence 899999999999999999998887 4578899999999999999 9876543322222111110 00
Q ss_pred hhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 045355 324 PLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKI 403 (900)
Q Consensus 324 ~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~ 403 (900)
.+...+ ......++.......... +|...+....+.|+.+.|...|
T Consensus 264 ----------------------------~l~~~~----~~~~~~~~~~~~~~~~~~--lw~~y~~~~~r~~~~~~AR~i~ 309 (493)
T 2uy1_A 264 ----------------------------DLKRKY----SMGEAESAEKVFSKELDL--LRINHLNYVLKKRGLELFRKLF 309 (493)
T ss_dssp ----------------------------HHHHHT----C----------CHHHHHH--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred ----------------------------HHHHHH----HhhccchhhhhcccccHH--HHHHHHHHHHHcCCHHHHHHHH
Confidence 000000 000000000000011123 3455567777788899999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCC
Q 045355 404 DEAIEHTPTVIDLYSVKSRILKHAG-DLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHN 482 (900)
Q Consensus 404 ~~al~~~P~~~~~~~~la~i~~~~G-~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~ 482 (900)
++| ...+.....|...|.+....| +++.|...|+.+++..|+++.+....+.+....|+.+.|..++....+
T Consensus 310 ~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------ 382 (493)
T 2uy1_A 310 IEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------ 382 (493)
T ss_dssp HHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------
T ss_pred HHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Confidence 999 433345667777787777666 699999999999999898886666667788889999999988877632
Q ss_pred ChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 045355 483 NLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYA 521 (900)
Q Consensus 483 ~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~ 521 (900)
...+|. .....-...|+...+.+.+++..+.+.
T Consensus 383 ----~~~lw~--~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 383 ----TSRMWD--SMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp ----BHHHHH--HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 112332 223333456999999999988887665
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.36 E-value=2.6e-11 Score=129.66 Aligned_cols=160 Identities=8% Similarity=-0.047 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------H
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG------ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------H 77 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~ 77 (900)
..++..+..++..|+|++|+..++++++..|... ..++.+|.++...|++++|+.++++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4556888889999999999999999999888765 346778999999999999999999999864433 5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH---hhCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNAL---RIDPDNI----EILRDLSLLQAQMRDLTGFVETRQQLLTLKPN------H 144 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 144 (900)
.++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|..+|++++|+.++++++.+.+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 589999999999999999999999999 4556543 68999999999999999999999999987543 2
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHH
Q 045355 145 RMNWIGFAVSHHLNSNGSKA-VEILE 169 (900)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A-~~~l~ 169 (900)
..+++.+|.++...|++++| ...++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 57899999999999999999 53333
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=4.3e-12 Score=116.05 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
..+..|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.++|++..+|..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCHHHHHHHHHHHHhhCCCc
Q 045355 91 REYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~ 110 (900)
|++++|+.+|+++++.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 66666666666666665554
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.35 E-value=5.6e-12 Score=115.26 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
.++.+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+.+|+++++++|++..++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHH
Q 045355 125 RDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~ 146 (900)
|++++|+..++++++.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999997643
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=2.1e-12 Score=121.59 Aligned_cols=101 Identities=8% Similarity=0.024 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC-------HH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEH-------GE-----TLSMKGLTLNCMDRKSEAYELVRLGVKN----- 72 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~-------~~-----~~~~lg~~~~~~g~~~eA~~~~~~al~~----- 72 (900)
..++..|..++..|+|++|+..|+++|+.+|++ .. +|..+|.++..+|++++|+..+++++.+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667777777777777777777777777762 22 4444454555555555555554444444
Q ss_pred --CCCcHHHH----HHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 045355 73 --DIKSHVCW----HVYGLLYRSDREYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 73 --~p~~~~~~----~~lg~~~~~~g~~~eAi~~~~~al~~~p~~ 110 (900)
+|++..+| +.+|.++..+|++++|+.+|+++++++|++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 44444444 444444444444444444444444444443
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.34 E-value=6.8e-12 Score=115.78 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-------HHHHHH
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI-------EILRDL 117 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~-------~~~~~l 117 (900)
++..+|.+++..|++++|+.+|++++.++|+++.+|..+|.+|..+|+|++|+..|+++++++|++. .++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444455555544444444443321 234445
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKP 142 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p 142 (900)
|.++..+|++++|++.|++++...|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5555555555555555555555444
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.34 E-value=9.2e-12 Score=114.89 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH-------HH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-------VC 79 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~ 79 (900)
....+....|..++..|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+..++++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999877653 47
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDL 117 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~l 117 (900)
+..+|.++...|++++|+.+|++++...|+ +.....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 889999999999999999999999999885 4444433
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.34 E-value=2.1e-11 Score=130.33 Aligned_cols=163 Identities=7% Similarity=-0.032 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------H
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGE------TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------H 77 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~ 77 (900)
..+...+..++..|+|++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34556688889999999999999999998887765 23358888999999999999999999964432 3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRI-------DPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH------ 144 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 144 (900)
.++..+|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+..+++++.+.+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 37899999999999999999999999953 12234578999999999999999999999999876433
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 045355 145 RMNWIGFAVSHHLNS-NGSKAVEILEAYE 172 (900)
Q Consensus 145 ~~~~~~la~~~~~~g-~~~~A~~~l~~~~ 172 (900)
..+++.+|.++..+| .+++|+..++...
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 678999999999999 5799995544433
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.34 E-value=1.3e-11 Score=115.05 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355 5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG 84 (900)
Q Consensus 5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 84 (900)
-+.....++..|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++..+|+++.+|+.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhc
Q 045355 85 LLYRSDREYREAIKCYRNALRIDPD-----NIEILRDLSLLQAQMR 125 (900)
Q Consensus 85 ~~~~~~g~~~eAi~~~~~al~~~p~-----~~~~~~~la~~~~~~g 125 (900)
.++...|++++|+.+|++++.++|+ +..+...+..+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 6677777766655443
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=6.9e-12 Score=121.07 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKK------------------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGV 70 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 70 (900)
...+...|..++..|+|++|+..|++++.. +|.+..++..+|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666666667777777777766665 33344455555555555555555555555555
Q ss_pred HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHH
Q 045355 71 KNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNI-EILRDLSLLQ 121 (900)
Q Consensus 71 ~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~~~la~~~ 121 (900)
.++|.+..+|+.+|.++...|++++|+.+|++++.++|++. .+...++.+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555544 3344444433
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=2.7e-12 Score=120.86 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHhccCHHHHHHHHHHHHhh----
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK-------SHV-----CWHVYGLLYRSDREYREAIKCYRNALRI---- 106 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~eAi~~~~~al~~---- 106 (900)
...+..+|..++..|++++|+..|+++++.+|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 467788999999999999999999999999998 444 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 107 ---DPDNIEIL----RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIG 150 (900)
Q Consensus 107 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (900)
+|++..+| +++|.++..+|++++|+..|+++++++|++....-.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999987654433
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=2.6e-11 Score=108.89 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
+..++.+|.++...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|++++..+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 123 QMRDLTGFVETRQQLLTLKPNHRMNWIGFAVS 154 (900)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (900)
..|++++|+..+++++..+|++...+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 55555555555555555555555555554443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=1.3e-11 Score=123.47 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG----------------ETLSMKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~----------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
...++..|..++..|+|++|+..|++++...|.++ .++..+|.++..+|++++|+.++++++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999887 89999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHH-HHHHHHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFV-ETRQQLL 138 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 138 (900)
+|.+..+++.+|.++...|++++|+.+|+++++++|++..++..++.++..+++..++. ..+.+++
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888776 4444443
No 159
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.33 E-value=4.6e-11 Score=120.62 Aligned_cols=130 Identities=13% Similarity=0.006 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
..++.+|.++...|++++|+..|++++ +| ++.+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 457889999999999999999999996 34 678999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 124 MRDLTGFVETRQQLLTLKPNHR----------------MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
.|++++|+..|++++...|.+. .+++.+|.++...|++++|+ ..+.+++...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE---EQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH---HHHHHHHHcCc
Confidence 9999999999999999888876 89999999999999999999 55666666654
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=1.1e-10 Score=124.64 Aligned_cols=175 Identities=13% Similarity=0.006 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---
Q 045355 40 PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH------VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN--- 110 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~--- 110 (900)
|.....+...+..+...|++++|++.+.+++...+... ..++.+|.++...|++++|+.+|++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34445667788899999999999999999999877643 345678999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCC
Q 045355 111 ---IEILRDLSLLQAQMRDLTGFVETRQQLL---TLKPNHR----MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYP 180 (900)
Q Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~ 180 (900)
..++..+|.+|...|++++|+..|++++ ...|++. .+++++|.++...|++++|+..++.........
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-- 229 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-- 229 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--
Confidence 5689999999999999999999999999 4566543 588999999999999999996555544332211
Q ss_pred CCcchhchhHHHHHHHHHHHHcCCHHHH-HHHHHHHhhh
Q 045355 181 PDNERCEHGEMLLYKISLLEECGSFERA-LAEMHKKESK 218 (900)
Q Consensus 181 ~~~~~~~~~~~~~~la~~~~~~g~~~~A-l~~l~~al~~ 218 (900)
........+++.+|.++...|++++| ..++++++..
T Consensus 230 --~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 230 --NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11133467888888888888888888 7778877653
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-11 Score=113.35 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=98.8
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEIL 114 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 114 (900)
..|.+...+..+|.++...|++++|+.+|++++..+|++ ..+|..+|.++...|++++|+.+|++++..+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 356778888888888888888888888888888888877 77888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045355 115 RDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSH 155 (900)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (900)
..+|.++...|++++|+..+++++..+|++..++..++.+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88888888888888888888888888888888777766654
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=3.8e-11 Score=107.83 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLY 87 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 87 (900)
....++..|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 88 RSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 88 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999998888765
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=1.2e-11 Score=119.43 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKN------------------DIKSHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
+..+..+|..++..|++++|+..|.+++.. +|.+..+|..+|.+|...|+|++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999998 77778899999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 045355 105 RIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR-MNWIGFAVSHHLN 158 (900)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 158 (900)
.++|+++.+++.+|.++..+|++++|+..|++++.++|++. .....++.+....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 5566665555433
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=6.5e-11 Score=107.39 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYR 88 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 88 (900)
...++..|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+.++++++..+|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 89 ~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
..|++++|+.+|++++..+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987764
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=1e-11 Score=121.58 Aligned_cols=124 Identities=15% Similarity=0.272 Sum_probs=111.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhcCH--HH
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL-QAQMRDL--TG 129 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 129 (900)
+...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|++++.++|++..++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCC
Q 045355 130 FVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~ 179 (900)
|+..+++++..+|++..+++.+|.++...|++++|+ ..+.+++...|
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAI---ELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH---HHHHHHHhhCC
Confidence 999999999999999999999999999999999999 55556666554
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=6.6e-11 Score=108.79 Aligned_cols=109 Identities=13% Similarity=0.044 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHH
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHG---ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVYGL 85 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~ 85 (900)
++..|..++..|+|++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45555566666666666666666666666555 555666666666666666666666666655555 555556666
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045355 86 LYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~ 120 (900)
++...|++++|+..|++++...|++..+...+..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 66666666666666666666666555544444333
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=5.1e-11 Score=109.55 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH---VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN---IEILRDL 117 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~l 117 (900)
++++.+|.++...|++++|+..|++++..+|++. .+++.+|.++...|++++|+.+|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999988 799999999999999999999999999999999 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS 159 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (900)
|.++..+|++++|+..|++++...|++..+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887766655544433
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=1.8e-11 Score=108.99 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC--cHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD--NIEILRD 116 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~ 116 (900)
+|+++.++..+|.++...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57777888888888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHHHhCCCC
Q 045355 117 LSLLQAQM-RDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 117 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 144 (900)
+|.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888 88888888888888887765
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=3.6e-11 Score=120.09 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=126.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHhccC
Q 045355 19 SYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK------NDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 19 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~ 92 (900)
++..|+|++|...++.+....+..+.++..+|.++...|++++|+.++++++. ..+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966665543336788999999999999999999999999998 445567789999999999999
Q ss_pred HHHHHHHHHHHHhh---CCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcC
Q 045355 93 YREAIKCYRNALRI---DPD----NIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP--NHR----MNWIGFAVSHHLNS 159 (900)
Q Consensus 93 ~~eAi~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g 159 (900)
+++|+.+|++++.+ .++ ...++..+|.++...|++++|+..+++++...+ .++ .++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999988 443 345689999999999999999999999997642 222 34688999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 045355 160 NGSKAVEILEAYEGTL 175 (900)
Q Consensus 160 ~~~~A~~~l~~~~~~l 175 (900)
++++|...+.......
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999996665544443
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.26 E-value=2.1e-10 Score=122.57 Aligned_cols=169 Identities=14% Similarity=0.010 Sum_probs=129.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHH
Q 045355 81 HVYGLLYRSDREYREAIKCYRNALRIDPDNIE------ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR------MNW 148 (900)
Q Consensus 81 ~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~ 148 (900)
...+..+...|+|++|+..+++++...+.++. .+..+|.++...|++++|+..+++++...+... .++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34466777888888888888888887766544 233577777778888888888888888654322 257
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CH
Q 045355 149 IGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV------DK 222 (900)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p------~~ 222 (900)
..+|.+|...|++++|+..++...+.....+. . .+....+++++|.+|...|++++|+.+++++++..+ ..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~--~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHD-N--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 88888888888888888655554443332211 1 256677999999999999999999999999998754 34
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 045355 223 LAYKEQEVSLLVKIG-RLEEAAELYRALLSM 252 (900)
Q Consensus 223 ~~~~~~la~~~~~~g-~~~eA~~~~~~al~~ 252 (900)
..++..+|.++..+| .+++|+.+|++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 789999999999999 479999999999875
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8.9e-11 Score=110.49 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=110.6
Q ss_pred ChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 6 PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
+.....++..|..++..|+|++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|.+..+|+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3456788899999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 83 YGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
+|.++...|++++|+.+|++++.++|++..++..++.+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999888877543
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=3e-10 Score=119.59 Aligned_cols=209 Identities=15% Similarity=0.065 Sum_probs=160.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHh
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDI--KSHVCWHVYGLLYRS 89 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~ 89 (900)
.+.....+...+ |+..+++.+...+....++..+|.++...|++++|+.++.+++..+| .+..++..++.++..
T Consensus 73 a~~~la~~~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 73 VLDLYVQFLDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHHHHTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 344444444422 78888888877667778888999999999999999999999999887 889999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCC----cHHHHHHH--HHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 90 DREYREAIKCYRNALRIDPD----NIEILRDL--SLLQAQMR--DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 90 ~g~~~eAi~~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
.|+.+.|.+.++++.+.+|+ +..++..+ +.+.+..| ++.+|...|+++....|+.......+. ++..+|++
T Consensus 149 ~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~ 227 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNI 227 (310)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCH
T ss_pred CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCH
Confidence 99999999999999999983 23344444 44466667 999999999999888886222223333 89999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKE 227 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~ 227 (900)
++|...|+.+.+....-.......|.++.++.+++.+....|+ +|.++++++.+..|+++.+.-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 9999777654443210000000015677899899889988998 899999999999999887643
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=7.5e-11 Score=134.43 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEH---------------GETLSMKGLTLNCMDRKSEAYELVRLGVKND 73 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 73 (900)
...++..|..++..|+|++|+..|+++++.+|.+ ..++..+|.++..+|++++|+..|++++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4467889999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH-HHHHH
Q 045355 74 IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET-RQQLL 138 (900)
Q Consensus 74 p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al 138 (900)
|++..+|+.+|.+|...|++++|+.+|+++++++|++..++..++.++..+++++++... +.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887643 44443
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=5.6e-11 Score=108.95 Aligned_cols=112 Identities=7% Similarity=-0.037 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-------HHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN-------IEILR 115 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~-------~~~~~ 115 (900)
+..+..+|.++...|++++|+.++++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555556666666666666666666666666555566666666666666666666666666555544 55566
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045355 116 DLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSH 155 (900)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (900)
.+|.++...|++++|+..|++++...| ++..+..++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666666666666666666666666555 344444444433
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=3.8e-11 Score=112.71 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=73.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 21 ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRK----------SEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 21 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
+.++|++|++.++++++.+|+++++|..+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999988775 4888888888888888888888888888776
Q ss_pred c-----------CHHHHHHHHHHHHhhCCCcH
Q 045355 91 R-----------EYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 91 g-----------~~~eAi~~~~~al~~~p~~~ 111 (900)
| ++++|+.+|++|++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 67777777777777777654
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.21 E-value=1.4e-11 Score=134.62 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG-----------------ETLSMKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~-----------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
..++..|..++..|+|++|+..|++++...|++. .++..+|.++..+|++++|+.+|++++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666544 24444444444444444444444444444
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCC
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL-QAQMRDLTGFVETRQQLLTLKPN 143 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~ 143 (900)
+|++..+|+.+|.+|...|++++|+.+|+++++++|++..++..++.+ ....+..+.+...|.+++...|+
T Consensus 260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 444444444444444444444444444444444444444444444444 22233344444444444444443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.21 E-value=1.5e-10 Score=105.96 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-------HHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS-------HVC 79 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~ 79 (900)
.....++..|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
++.+|.++...|++++|+.+|++++...| +...+..++.+....++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 68888888887766543
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.21 E-value=5.3e-12 Score=144.63 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (900)
..+|.++...|++++|+..|+++++.+|++..+|..+|.+|...|++++|+.+|+++++++|++..++..+|.++..+|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444444444444444445554445555555555555554444444444445555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHH
Q 045355 127 LTGFVETRQQLLTLKPNHRMNWIGFAVS--HHLNSNGSKAV 165 (900)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~ 165 (900)
+++|+..|+++++++|++..++..++.+ +...|++++|+
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555444444444444444 44444555554
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.21 E-value=2.4e-10 Score=114.10 Aligned_cols=162 Identities=9% Similarity=-0.027 Sum_probs=113.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhcC
Q 045355 53 LNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI------DPDNIEILRDLSLLQAQMRD 126 (900)
Q Consensus 53 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 126 (900)
++..|++++|...++......+....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356899999999665554433367889999999999999999999999999983 44556789999999999999
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHH
Q 045355 127 LTGFVETRQQLLTL---KPNH----RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLL 199 (900)
Q Consensus 127 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 199 (900)
+++|+..+++++.+ .+++ ..++..+|.++...|++++|+..++.......... . ......++..+|.++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~--~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--D--QVAIACAFRGLGDLA 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--c--hHHHHHHHHHHHHHH
Confidence 99999999999887 4422 35677888888888888888855554433322111 0 122334456666666
Q ss_pred HHcCCHHHHHHHHHHHhhh
Q 045355 200 EECGSFERALAEMHKKESK 218 (900)
Q Consensus 200 ~~~g~~~~Al~~l~~al~~ 218 (900)
...|++++|+..+++++..
T Consensus 158 ~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 180
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=5.5e-08 Score=111.39 Aligned_cols=382 Identities=12% Similarity=0.005 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc---CCCcHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDR-KSEAYELVRLGVKN---DIKSHVCWHVY 83 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~---~p~~~~~~~~l 83 (900)
.....|..+...+-.|+++.+..+|++++...| +.+.|..........+. .+.....|+.++.. +|.++..|..+
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 457889999999988999999999999999888 78888877776666653 45567788888874 78889999888
Q ss_pred HHHHH----hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045355 84 GLLYR----SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNS 159 (900)
Q Consensus 84 g~~~~----~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (900)
...+. ..++.+.+...|++++..-+.+..-+...-..+....+...+....... .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--------------------~~ 151 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--------------------LP 151 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH--------------------HH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH--------------------hH
Confidence 88765 3578899999999999964333332222111111112222222222211 12
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHc--C-----CHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 045355 160 NGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEEC--G-----SFERALAEMHKKESKIVDKLAYKEQEVSL 232 (900)
Q Consensus 160 ~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~--g-----~~~~Al~~l~~al~~~p~~~~~~~~la~~ 232 (900)
.+..|..++.......... ....|......-... | ........|++++...|..+.+|...+..
T Consensus 152 ~y~~ar~~y~~~~~~~~~~---------s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGW---------SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc---------cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2333333322222222110 113443333332211 1 13557789999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccch
Q 045355 233 LVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGE 312 (900)
Q Consensus 233 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~ 312 (900)
+...|+.++|..+|++++.. |.+...+...+.... .++ .++.+....-....- ........
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---------~~~------~~~~l~~~~~~~~~~---~~~~~~~~ 283 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---------EEA------VYGDLKRKYSMGEAE---SAEKVFSK 283 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---------CTH------HHHHHHHHTC-------------CHH
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---------hhH------HHHHHHHHHHhhccc---hhhhhccc
Confidence 99999999999999999999 999877776555431 111 133332221000000 00000000
Q ss_pred HHHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045355 313 KFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDR 392 (900)
Q Consensus 313 ~~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~ 392 (900)
... .++.....+....+..+.+..+++.. . .+. .+.. +|...|.+...
T Consensus 284 ~~~----------------~lw~~y~~~~~r~~~~~~AR~i~~~A----~----~~~------~~~~--v~i~~A~lE~~ 331 (493)
T 2uy1_A 284 ELD----------------LLRINHLNYVLKKRGLELFRKLFIEL----G----NEG------VGPH--VFIYCAFIEYY 331 (493)
T ss_dssp HHH----------------HHHHHHHHHHHHHHCHHHHHHHHHHH----T----TSC------CCHH--HHHHHHHHHHH
T ss_pred ccH----------------HHHHHHHHHHHHcCCHHHHHHHHHHh----h----CCC------CChH--HHHHHHHHHHH
Confidence 111 11111111111112233344444433 1 111 1122 33444555555
Q ss_pred hC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHH
Q 045355 393 RG-QYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTA 471 (900)
Q Consensus 393 ~g-~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~ 471 (900)
.+ +.+.|..+|+.+++..|+.++.+...+......|+.+.|...|+++ +....++.....+-...|+.+.+.+++
T Consensus 332 ~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55 6999999999999999999999999999999999999999999998 344577777777777889999888776
Q ss_pred HHh
Q 045355 472 ALF 474 (900)
Q Consensus 472 ~~~ 474 (900)
...
T Consensus 408 ~~~ 410 (493)
T 2uy1_A 408 DQK 410 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=3.4e-11 Score=109.16 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=55.2
Q ss_pred hccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q 045355 22 TKQYKKGLKAADAILKK---FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIK 98 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~ 98 (900)
.|++++|+..|+++++. +|+++.++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666665 355556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCcHHHH
Q 045355 99 CYRNALRIDPDNIEIL 114 (900)
Q Consensus 99 ~~~~al~~~p~~~~~~ 114 (900)
+|++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666655543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=3.3e-11 Score=138.03 Aligned_cols=125 Identities=10% Similarity=0.108 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.++..|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|++..+|+.+|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLL--QAQMRDLTGFVETRQ 135 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 135 (900)
|++++|+.+|+++++++|++..++..++.+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988 888999999999998
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.17 E-value=8.3e-11 Score=110.43 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=88.2
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 045355 55 CMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREY----------REAIKCYRNALRIDPDNIEILRDLSLLQAQM 124 (900)
Q Consensus 55 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~eAi~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (900)
+.+++++|+..++++++++|+++.+|+.+|.++...+++ ++|+.+|+++++++|++..+|+.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred c-----------CHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 125 R-----------DLTGFVETRQQLLTLKPNHRMNWIG 150 (900)
Q Consensus 125 g-----------~~~~A~~~~~~al~~~p~~~~~~~~ 150 (900)
| ++++|+.+|+++++++|++...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5 8999999999999999998754443
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.2e-10 Score=128.12 Aligned_cols=205 Identities=14% Similarity=0.060 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG-----------------ETLSMKGLTLNCMDRKSEAYELVRLGVKN 72 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~-----------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 72 (900)
.+.+.+|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999888753 36889999999999999999999999886
Q ss_pred CCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 045355 73 DIKS------HVCWHVYGLLYRSDREYREAIKCYRNALRID------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL 140 (900)
Q Consensus 73 ~p~~------~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (900)
.+.. ..+...+|.++...|++++|+..+++++... +....++..+|.++...|+|++|+..+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4432 2346678899999999999999999998763 234678899999999999999999999999875
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 141 ------KPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHK 214 (900)
Q Consensus 141 ------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~ 214 (900)
.+.....+..++.++...|++++|...++.........+ .........+...|.++...|++.+|..++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY---CPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 233457899999999999999999966655444332221 10122345566666777777777777777766
Q ss_pred Hhh
Q 045355 215 KES 217 (900)
Q Consensus 215 al~ 217 (900)
++.
T Consensus 242 a~~ 244 (434)
T 4b4t_Q 242 SFE 244 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=2.2e-10 Score=126.47 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVK----------------NDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP 108 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p 108 (900)
.+..+|..++..|++++|+..|+++++ .+|.+..+|..+|.+|...|+|++|+.+|+++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345555555555555555555555555 6667777788888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAV 165 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (900)
++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888777777776
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=4.3e-11 Score=108.45 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=86.5
Q ss_pred hCCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHH
Q 045355 55 CMDRKSEAYELVRLGVKN---DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFV 131 (900)
Q Consensus 55 ~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 131 (900)
.+|++++|+.+|++++.. +|.+..+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 045355 132 ETRQQLLTLKPNHRMNWI 149 (900)
Q Consensus 132 ~~~~~al~~~p~~~~~~~ 149 (900)
..+++++...|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999987543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=2.3e-10 Score=126.34 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILK----------------KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKND 73 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~----------------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 73 (900)
..+...|..++..|+|++|+..|+++++ .+|.+..++..+|.++..+|++++|+.+++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999998 778888999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 045355 74 IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 74 p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 133 (900)
|++..+|+.+|.+|...|++++|+.+|+++++++|++..++..++.++..+++++++...
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887653
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=3.2e-10 Score=100.68 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIK--SHVCWHVYGLL 86 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~ 86 (900)
...++..|..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|. +..+|..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhc-cCHHHHHHHHHHHHhhCCCc
Q 045355 87 YRSD-REYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 87 ~~~~-g~~~eAi~~~~~al~~~p~~ 110 (900)
+... |++++|++++++++...|.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999999999875
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=6.4e-11 Score=129.28 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhccCHHHHHHHHH
Q 045355 39 FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-----------------VCWHVYGLLYRSDREYREAIKCYR 101 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eAi~~~~ 101 (900)
.+..+..+..+|.+++..|++++|+..|++++...|.+. .+|+++|.+|...|+|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344567889999999999999999999999999999877 489999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhccC
Q 045355 102 NALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL-NSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 102 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~l~~~ 178 (900)
++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+... .+..+.+. ..|.+++...
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~---~~~~~~l~~~ 329 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK---EMYKGIFKGK 329 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999988544 46666666 4455555544
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.1e-09 Score=123.69 Aligned_cols=206 Identities=8% Similarity=-0.024 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH-----------------VCWHVYGLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eAi~~~~~al~ 105 (900)
|.+....|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|++.|.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999999999877643 3578999999999999999999999998
Q ss_pred hCCCcH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 106 IDPDNI------EILRDLSLLQAQMRDLTGFVETRQQLLTLKP------NHRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 106 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
..+... .+...++.++...|+++.|+..+++++...+ .....+..+|.++...|++.+|+..+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 755432 2456678888889999999999999987532 2346788999999999999999988777665
Q ss_pred hhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---C----HHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 174 TLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIV---D----KLAYKEQEVSLLVKIGRLEEAAELY 246 (900)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p---~----~~~~~~~la~~~~~~g~~~eA~~~~ 246 (900)
...... + .+...+++..++.+|...|++++|...+++++...+ + ...++..+|.++...|++++|..+|
T Consensus 164 ~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 164 EFKKLD--D--KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHTTSS--C--STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHhcc--c--chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 544321 1 266788999999999999999999999999987532 1 2467788899999999999999999
Q ss_pred HHHHHh
Q 045355 247 RALLSM 252 (900)
Q Consensus 247 ~~al~~ 252 (900)
.++++.
T Consensus 240 ~~a~~~ 245 (434)
T 4b4t_Q 240 FESFES 245 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.03 E-value=1.3e-09 Score=103.66 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------H
Q 045355 10 ANLFKLIVKSYETKQYKKGLKAADAILKKFPEHG------ETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------H 77 (900)
Q Consensus 10 ~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~ 77 (900)
..++..|..++..|++++|+..+++++...+... .++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666666777777777777777776544321 366667777777777777777777776643321 4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPD------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK 141 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 141 (900)
.++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..+++++.+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777655321 23456666667777777777777776666543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.98 E-value=3.8e-09 Score=100.36 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH------VCWHVYGLLYRSDREYREAIKCYRNALRIDPDN------ 110 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------ 110 (900)
+.++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+|++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45789999999999999999999999998754432 478999999999999999999999999875442
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 111 IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN------HRMNWIGFAVSHHLNSNGSKAVEILEAYEG 173 (900)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 173 (900)
..++..+|.++...|++++|+..+++++...+. ....+..+|.++...|++++|+..++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567899999999999999999999999986432 245688999999999999999966555443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.96 E-value=5.4e-09 Score=93.95 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 27 KGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 27 ~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+.+|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777778888888887777777777777777777777777777777777777777
Q ss_pred CCC--cHHHHHHHHHHH
Q 045355 107 DPD--NIEILRDLSLLQ 121 (900)
Q Consensus 107 ~p~--~~~~~~~la~~~ 121 (900)
.|. +......+...+
T Consensus 83 ~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 663 333334443333
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=9.5e-10 Score=97.81 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDN------IEILRD 116 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~ 116 (900)
+.++..+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666665 555666
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 045355 117 LSLLQAQMRDLTGFVETR 134 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~ 134 (900)
+|.++..+|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666555544433
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=1e-08 Score=87.38 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045355 43 GETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122 (900)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~ 122 (900)
+.+++.+|.++...|++++|+.++++++..+|.+..+|..+|.++...|++++|+.+|++++.++|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred H
Q 045355 123 Q 123 (900)
Q Consensus 123 ~ 123 (900)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=1.2e-08 Score=91.66 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 045355 60 SEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLT 139 (900)
Q Consensus 60 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (900)
++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 045355 140 LKPNH 144 (900)
Q Consensus 140 ~~p~~ 144 (900)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 88753
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.87 E-value=1.8e-08 Score=85.78 Aligned_cols=86 Identities=27% Similarity=0.365 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 74 IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 74 p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
|.+..+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++..+|++..++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 045355 154 SHHLNS 159 (900)
Q Consensus 154 ~~~~~g 159 (900)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.3e-09 Score=95.28 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------HHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKS------HVCWH 81 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~ 81 (900)
....++..|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred HHHHHHHhccCHHHHHHHHHH
Q 045355 82 VYGLLYRSDREYREAIKCYRN 102 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~ 102 (900)
.+|.++...|++++|+..|++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888776654
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.79 E-value=2.6e-08 Score=87.11 Aligned_cols=86 Identities=20% Similarity=0.134 Sum_probs=64.4
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC--cHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD--NIEILR 115 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~ 115 (900)
.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.+|...|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 468888888888888888888888888888888888888888888888888888888888888888877653 333444
Q ss_pred HHHHHHHH
Q 045355 116 DLSLLQAQ 123 (900)
Q Consensus 116 ~la~~~~~ 123 (900)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.74 E-value=1.5e-08 Score=88.04 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGE-TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
+..|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++..+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45566666666666666666666666666666 66666666666666666666666666666666655532 4
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 045355 92 EYREAIKCYRNALRIDPD 109 (900)
Q Consensus 92 ~~~eAi~~~~~al~~~p~ 109 (900)
.+.+++.+|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 555566666655555544
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.70 E-value=1.9e-08 Score=87.43 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKSHV-CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g 125 (900)
+.+|.++...|++++|+..|++++..+|.+.. +|+.+|.++...|++++|+.+|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45667777777777777777777777777777 77777777777777777777777777777777666533 4
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 045355 126 DLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~ 144 (900)
.+.+++..|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5566666666666655544
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.70 E-value=3.1e-07 Score=85.52 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=104.0
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRS----DREYREAI 97 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAi 97 (900)
.+++++|+.+|+++.+..+.. +. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 368999999999999876444 44 999999999999999999999986 678899999999998 89999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045355 98 KCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVETRQQLLTLKPNHRMNWIGF 151 (900)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 151 (900)
.+|+++.+. .++.++..||.+|.. .+++++|+..|+++.+.. ++.+...+
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 999999986 678999999999999 899999999999998873 44444443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=6.9e-08 Score=84.35 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=67.1
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 045355 72 NDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH 144 (900)
Q Consensus 72 ~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (900)
.+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++.+.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999886643
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.67 E-value=8e-08 Score=109.14 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C---C
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKK-----FPEHG---ETLSMKGLTLNCMDRKSEAYELVRLGVKN-----D---I 74 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~---p 74 (900)
..+..+..+..+|+|++|+..++++|.. .|+|+ .++..+|.+|..+|++++|+.++++++.+ . |
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455666677889999999999999873 45555 46788999999999999999999999874 3 3
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----CCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 045355 75 KSHVCWHVYGLLYRSDREYREAIKCYRNALRI-----DPDNIE---ILRDLSLLQAQMRDLTGFVETRQQLLTL 140 (900)
Q Consensus 75 ~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (900)
.....++++|.+|..+|+|++|+..|++|+.+ .|+++. ....++.++..++.+++|...|+++.+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556889999999999999999999999864 566654 4567888888889999998888887653
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.66 E-value=4.2e-07 Score=97.22 Aligned_cols=140 Identities=9% Similarity=0.005 Sum_probs=111.4
Q ss_pred ChHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----C---HHHHHH-HHH--HHHHc
Q 045355 6 PSKDANLFKLIVKSYET---KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD----R---KSEAYE-LVR--LGVKN 72 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g----~---~~eA~~-~~~--~al~~ 72 (900)
++..-.++.+|..++.. .++.+|+.+|+++++.+|+++.++..++.++.... . ..+++. .++ .++..
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 34556778888888765 45689999999999999999999999888885321 1 111111 122 22346
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+++.++|..+.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7889999999999999899999999999999999975 677889999999999999999999999999998754
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=1.3e-06 Score=99.22 Aligned_cols=135 Identities=7% Similarity=-0.086 Sum_probs=109.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 117 LSLLQAQMRDLTGFVETRQQLLTL-----KPNHR---MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
.+..+..+|+|++|+..+++++.+ .|+++ ..+.++|.+|..+|+|++|+.+++..........+++. |..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--p~~ 392 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--AQL 392 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC--HHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC--HHH
Confidence 344566789999999999999975 35554 56788999999999999999766665554444444555 888
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--------cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESK--------IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
...+.++|.+|..+|++++|+..|++++.+ .|.......+++.++..+|.+++|...|+++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999875 34556677899999999999999999999987654
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=2.2e-06 Score=79.45 Aligned_cols=98 Identities=14% Similarity=0.001 Sum_probs=82.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHhccCHHHHH
Q 045355 23 KQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD---RKSEAYELVRLGVKND-I-KSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 23 g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
.....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++.+++..++.+ | +..++++.+|..+.+.|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34556677777777888889999999999999988 6669999999999988 7 56889999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q 045355 98 KCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~ 120 (900)
++++++++++|+|.++....-.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999998876654443
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=1.7e-06 Score=74.03 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 045355 39 FPEHGETLSMKGLTLNCMDR---KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPD 109 (900)
Q Consensus 39 ~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~ 109 (900)
+|++++.+..+|.+++..++ .++|..++++++..+|+++.++..+|..++..|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56777777777777765544 577777777777777777777777777777777777777777777777766
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=6.1e-06 Score=76.64 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcCHHHHHH
Q 045355 57 DRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ----MRDLTGFVE 132 (900)
Q Consensus 57 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 132 (900)
+++++|+.+|+++.+.... .+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3689999999999987643 344 999999999999999999999987 689999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhccC
Q 045355 133 TRQQLLTLKPNHRMNWIGFAVSHHL----NSNGSKAVEILEAYEGTLEDD 178 (900)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~l~~~ 178 (900)
.|+++.+. .++.+++.+|.+|.. .+++++|+ ..|.++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~---~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV---KTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHH---HHHHHHHHCC
Confidence 99999986 789999999999999 89999999 5666666543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.34 E-value=1.8e-05 Score=84.70 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=106.3
Q ss_pred HHHcCCCcHHHH--HHHHHHHHhcc---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 045355 69 GVKNDIKSHVCW--HVYGLLYRSDR---EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN 143 (900)
Q Consensus 69 al~~~p~~~~~~--~~lg~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (900)
+....|.+..+| +..|..+...+ .+.+|+.+|++|++++|++..++..++.++... ....|.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~ 252 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPL 252 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCC
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCC
Confidence 344456655544 44555555443 346788888888888888887777777776611 011121
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHH
Q 045355 144 HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKL 223 (900)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~ 223 (900)
.......+ ..+. ... ..+..+ +..+.++..++..+...|++++|+..+++++.++|+ .
T Consensus 253 ~~~~~~~l----------~~a~---~a~-~a~~~~-------~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~ 310 (372)
T 3ly7_A 253 DEKQLAAL----------NTEI---DNI-VTLPEL-------NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-W 310 (372)
T ss_dssp CHHHHHHH----------HHHH---HHH-HTCGGG-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-H
T ss_pred chhhHHHH----------HHHH---HHH-HhcccC-------CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-H
Confidence 11111000 1121 111 122222 455678888888888889999999999999999986 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045355 224 AYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEG 262 (900)
Q Consensus 224 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 262 (900)
..+..+|.++...|++++|++.|.+++.++|....++..
T Consensus 311 ~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~ 349 (372)
T 3ly7_A 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349 (372)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence 677899999999999999999999999999988754443
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.33 E-value=2.1e-05 Score=80.56 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---------------------CHHHHHHHHHHHHH-------------
Q 045355 26 KKGLKAADAILKKFPEHGETLSMKGLTLNCMD---------------------RKSEAYELVRLGVK------------- 71 (900)
Q Consensus 26 ~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g---------------------~~~eA~~~~~~al~------------- 71 (900)
.-.+..++-++..+|+|...+...|..|..-+ ++..|..+|.++..
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~ 128 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF 128 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 34677888888899999876655554443221 23355666555431
Q ss_pred ------------------cCCCcHHHHHHHHHHHHh-----cc------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHH
Q 045355 72 ------------------NDIKSHVCWHVYGLLYRS-----DR------EYREAIKCYRNALRIDPD--NIEILRDLSLL 120 (900)
Q Consensus 72 ------------------~~p~~~~~~~~lg~~~~~-----~g------~~~eAi~~~~~al~~~p~--~~~~~~~la~~ 120 (900)
.+|++...++..|.+... .| ....|...++++++++|+ +..+|..+|.+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 234555555555554432 12 367899999999999999 66699999999
Q ss_pred HHHh-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhccCC
Q 045355 121 QAQM-----RDLTGFVETRQQLLTLKPNH-RMNWIGFAVSHHLN-SNGSKAVEILEAYEGTLEDDY 179 (900)
Q Consensus 121 ~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~l~~~~ 179 (900)
|... |+.+.|..+|+++++++|+. ...++.+|..+... |+++++.. .+.+++..++
T Consensus 209 Y~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~---~L~kAL~a~p 271 (301)
T 3u64_A 209 YAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE---ALDRALAIDP 271 (301)
T ss_dssp HHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH---HHHHHHHCCG
T ss_pred HHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH---HHHHHHcCCC
Confidence 9995 99999999999999999975 99999999999885 99999994 5555666544
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.27 E-value=4.7e-06 Score=71.32 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 045355 73 DIKSHVCWHVYGLLYRSDRE---YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHR 145 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~---~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (900)
+|+++..+..+|.++...++ .++|...++++++.+|+++.++..+|..+++.|+|++|+..|++++..+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999876665 79999999999999999999999999999999999999999999999999843
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=9.9e-06 Score=75.00 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcCHHHHHHH
Q 045355 59 KSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR---EYREAIKCYRNALRID-P-DNIEILRDLSLLQAQMRDLTGFVET 133 (900)
Q Consensus 59 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAi~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 133 (900)
...+.+.|.+.+..++.+..+.+.+|+++...+ +.++++..++..++.+ | ++.++++.+|..++++|+|+.|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456778888888888999999999999999988 6779999999999998 7 5789999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHH
Q 045355 134 RQQLLTLKPNHRMNWIGF 151 (900)
Q Consensus 134 ~~~al~~~p~~~~~~~~l 151 (900)
++++++++|++.++....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999998876544
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.15 E-value=8.7e-05 Score=76.05 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCcCC-hhHHHHHHHHHHHc-CChH
Q 045355 395 QYDVALSKIDEAIEHTPT--VIDLYSVKSRILKHA-----GDLAAAATLADEARCMDLAD-RYVNSECVKRMLQA-DQVS 465 (900)
Q Consensus 395 ~~~~Al~~~~~al~~~P~--~~~~~~~la~i~~~~-----G~~~eA~~~~~~al~ldp~d-~~l~~~~a~~~l~~-g~~e 465 (900)
....|...++++++++|+ +..+|..+|.+|... |+.++|.++|++|++++|+. ...+...+.++++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 468999999999999999 666999999999995 99999999999999999976 78999999999884 9999
Q ss_pred HHHHHHHHhcc
Q 045355 466 LAEKTAALFTK 476 (900)
Q Consensus 466 eA~~~~~~~~~ 476 (900)
+|.+.+.....
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988887
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.14 E-value=1.8e-05 Score=88.33 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=42.6
Q ss_pred hccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Q 045355 22 TKQYKKGLKAADAILKK-----FPEHG---ETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DIKSHVCWHVYGL 85 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~ 85 (900)
.|+|++|+..++++|.+ .|+|+ .++..+|.+|..+|++++|+.++++++.+ +|+....++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555555542 33333 23445555555555555555555555542 2222333555555
Q ss_pred HHHhccCHHHHHHHHHHHHh
Q 045355 86 LYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 86 ~~~~~g~~~eAi~~~~~al~ 105 (900)
+|..+|+|++|+..|++|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 55555555555555555554
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.08 E-value=2.6e-05 Score=68.29 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRID-------PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (900)
++.+|..++..|+|..|+.+|+.|++.. +....++..+|.++.++|+++.|+..+++++.+.|++..+..+++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4455666666666666666666555532 234555666666666666666666666666666666655544443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.08 E-value=1e-05 Score=90.49 Aligned_cols=96 Identities=17% Similarity=0.023 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CC
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKK-----FPEHG---ETLSMKGLTLNCMDRKSEAYELVRLGVKN--------DI 74 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p 74 (900)
.++.....+..+|+|++|+..+++++.. .|+|+ .++..+|.+|..+|++++|+.++++++.. +|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4445555566667777777777777652 34443 35566666677777777777777776653 22
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 045355 75 KSHVCWHVYGLLYRSDREYREAIKCYRNALRI 106 (900)
Q Consensus 75 ~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~ 106 (900)
.....++++|.+|..+|++++|+..|++|+++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23344666777777777777777777766653
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.04 E-value=3.5e-05 Score=67.47 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKN-------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
.-.+.+|..++..|++..|+.+|++|++. .+....++..+|.++...|+++.|+..++++++++|++..++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34445555555555555555555555543 12345566666777777777777777777777777766666555
Q ss_pred HH
Q 045355 117 LS 118 (900)
Q Consensus 117 la 118 (900)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.03 E-value=0.00045 Score=78.83 Aligned_cols=162 Identities=6% Similarity=0.004 Sum_probs=130.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHcC-CCcHHHHHH
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKF-PEHGETLSMKGLTLNCMD---------RKSEAYELVRLGVKND-IKSHVCWHV 82 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~-p~~~~~~~~lg~~~~~~g---------~~~eA~~~~~~al~~~-p~~~~~~~~ 82 (900)
.....+.+.|+.++|+.+|+++.+.. +.+..+|..+-.++...+ ..++|.++|++..... .-+...|..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 33445557899999999999998752 335667776666665544 3689999999988753 225678899
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q 045355 83 YGLLYRSDREYREAIKCYRNALRID-PDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKP-NHRMNWIGFAVSHHLNSN 160 (900)
Q Consensus 83 lg~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 160 (900)
+...|.+.|++++|...|++..+.. .-+...|..+...|.+.|++++|.+.|+.+.+..- -+...|..+..++...|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 9999999999999999999988764 33678899999999999999999999999987532 255678999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 045355 161 GSKAVEILEAYEGTL 175 (900)
Q Consensus 161 ~~~A~~~l~~~~~~l 175 (900)
.++|.++++.+....
T Consensus 191 ~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 191 ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888876543
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.93 E-value=0.00091 Score=76.29 Aligned_cols=116 Identities=8% Similarity=0.009 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCH
Q 045355 127 LTGFVETRQQLLTLK-PNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSF 205 (900)
Q Consensus 127 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 205 (900)
++.|.+.|+++.... +-+...|..+...+.+.|++++|.++++.+.+. +..+ ....|..+...|.+.|+.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~P------d~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQP------RLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCC------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC------ccceehHHHHHHHHCCCH
Confidence 455555555555432 113445556666666666666666555444321 1111 124555566666666666
Q ss_pred HHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 206 ERALAEMHKKESK--IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 206 ~~Al~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
++|.+.++++.+. .|+ ...+..+...+.+.|+.++|..+++++-+.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 6666666666543 333 445566666777777777777777776654
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.85 E-value=0.00012 Score=81.52 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=84.7
Q ss_pred HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--------cCCHHHHHHH
Q 045355 157 LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK--------IVDKLAYKEQ 228 (900)
Q Consensus 157 ~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~--------~p~~~~~~~~ 228 (900)
..|+|++|+..++...........+++ |....++.++|.+|..+|+|++|+.++++++.+ .|+....+.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSN--VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhc--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 458999999777666555544444555 778889999999999999999999999999875 5567788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 045355 229 EVSLLVKIGRLEEAAELYRALLSM-----NPDNYSYYE 261 (900)
Q Consensus 229 la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~ 261 (900)
+|.+|..+|++++|+.+|++++++ .|+++....
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999999975 577765433
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.84 E-value=0.00021 Score=63.67 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=82.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcC-C-CcHHHHHHHHHHHHhccCHHHH
Q 045355 22 TKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSE---AYELVRLGVKND-I-KSHVCWHVYGLLYRSDREYREA 96 (900)
Q Consensus 22 ~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA 96 (900)
......+...|...+...+...++.+.+|+++.+..+... ++.+++..++.+ | ..-+|.+.+|..+++.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3455667777777778888889999999999999887766 999999988876 5 5678899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHH
Q 045355 97 IKCYRNALRIDPDNIEILRDLSLL 120 (900)
Q Consensus 97 i~~~~~al~~~p~~~~~~~~la~~ 120 (900)
+.+++..|+..|+|.++......+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998876554443
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.00042 Score=77.29 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=85.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--------cCCHH
Q 045355 152 AVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK--------IVDKL 223 (900)
Q Consensus 152 a~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~--------~p~~~ 223 (900)
..-+...|++++|+..++...........+.+ +....++.+++.+|..+|+|++|+.++++++.. .|+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDIN--IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455779999999665555443333344445 777889999999999999999999999999875 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 045355 224 AYKEQEVSLLVKIGRLEEAAELYRALLSM-----NPDNYSYYE 261 (900)
Q Consensus 224 ~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~ 261 (900)
..+.++|.+|..+|++++|+.+|++++++ .|+++....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 78999999999999999999999999975 577765543
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.51 E-value=0.00083 Score=59.77 Aligned_cols=95 Identities=9% Similarity=-0.011 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcCHHHHHH
Q 045355 58 RKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYRE---AIKCYRNALRID-P-DNIEILRDLSLLQAQMRDLTGFVE 132 (900)
Q Consensus 58 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e---Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 132 (900)
....+...|.+.+..++.+..+.+.+|+++....+... ++..++..++.+ | ..-..++.||..++++|+|+.|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34556677777777788889999999999999888776 999999999887 5 567889999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 045355 133 TRQQLLTLKPNHRMNWIGFA 152 (900)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la 152 (900)
+++.+|+..|++.++.....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 99999999999988765543
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.29 E-value=0.0049 Score=55.97 Aligned_cols=108 Identities=7% Similarity=-0.087 Sum_probs=92.1
Q ss_pred hCCCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCc--------HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 045355 38 KFPEHGETLSMKGLTLNCMDRK------SEAYELVRLGVKNDIKS--------HVCWHVYGLLYRSDREYREAIKCYRNA 103 (900)
Q Consensus 38 ~~p~~~~~~~~lg~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~eAi~~~~~a 103 (900)
..|++++.|......+...|+. ++-++.|++|+..-|.. ...|..++.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5799999999999888888998 89999999999865542 2346666655 5669999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 104 LRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 104 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
+.+......+|...|..-.++|+...|...+.+++...|...+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9998888999999999999999999999999999999988765
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.18 E-value=0.0019 Score=60.08 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCcHH
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKF---PEH------GETLSMKGLTLNCMDRKSEAYELVRLGVKN---DIKSHV 78 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~---p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~~~~ 78 (900)
.++..+..+++.|.|+.|+-....++... |+- .+++.++|..++..|+|..|...|++++.. -++...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999877643 331 348899999999999999999999999863 222222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSH 155 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (900)
....++. ...+. ....+ +.+.++.+.++.|+..++++++|+..++.+-.. ...+.....+|..|
T Consensus 102 ~~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 1111110 00000 01111 345567777888888888888888776653211 12344445555543
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.01 E-value=0.0075 Score=54.76 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=87.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhhccCCCCCc-chhchhHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 140 LKPNHRMNWIGFAVSHHLNSNG------SKAVEILEAYEGTLEDDYPPDN-ERCEHGEMLLYKISLLEECGSFERALAEM 212 (900)
Q Consensus 140 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~Al~~l 212 (900)
+.|++++.|..+.......|+. +.-+ +.|++++..-|+... .......+|...+.. ...++.++|.+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlr---d~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLI---GRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHH---HHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHH---HHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 4566777777776666666666 4333 445555544333211 112345566666654 5669999999999
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 213 HKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKC 266 (900)
Q Consensus 213 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 266 (900)
+.++..+...+.+|...|..-.++|+...|..++.+++...|.....+.....-
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 999888777789999999999999999999999999999999987765554433
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.94 E-value=0.018 Score=51.97 Aligned_cols=81 Identities=10% Similarity=-0.034 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 045355 40 PEHGETLSMKGLTLNCMDRK---SEAYELVRLGVKNDI-KSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILR 115 (900)
Q Consensus 40 p~~~~~~~~lg~~~~~~g~~---~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~ 115 (900)
+...++.+.+|+++.+..+. .+++.+++..++.+| ..-+|.+.+|..+.+.|+|++|..+.+..|+..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688889999999888754 578889999888877 46788899999999999999999999999999999888765
Q ss_pred HHHHH
Q 045355 116 DLSLL 120 (900)
Q Consensus 116 ~la~~ 120 (900)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.91 E-value=0.0084 Score=53.43 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045355 41 EHGETLSMKGLTLNCMDRK---SEAYELVRLGVKNDI-KSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRD 116 (900)
Q Consensus 41 ~~~~~~~~lg~~~~~~g~~---~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 116 (900)
-.+.+.+..|+++.+..+. .+++.+++..++.+| ...+|++.+|..+.+.|+|++|..+.+.+++..|+|.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578889999999888754 578999999998888 457899999999999999999999999999999999887655
Q ss_pred HHHH
Q 045355 117 LSLL 120 (900)
Q Consensus 117 la~~ 120 (900)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.42 E-value=0.012 Score=52.35 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 045355 8 KDANLFKLIVKSYET---KQYKKGLKAADAILKKFPE-HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVY 83 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~---g~~~~Al~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 83 (900)
.....|+.|..+... .+..+++.+++.+++..|. .-+.++.+|..++++|+|++|..+.+..++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 346788888888865 4667899999999999984 578999999999999999999999999999999998877555
Q ss_pred HHH
Q 045355 84 GLL 86 (900)
Q Consensus 84 g~~ 86 (900)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.36 E-value=0.025 Score=51.03 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 7 SKDANLFKLIVKSYET---KQYKKGLKAADAILKKFPE-HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~---g~~~~Al~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
+..+..|+.|..+... .+..+++.+++.+++..|. .-+.++.+|..++++|+|++|..+.+..++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4567889999988866 4566899999999999984 56899999999999999999999999999999999877655
Q ss_pred HHHH
Q 045355 83 YGLL 86 (900)
Q Consensus 83 lg~~ 86 (900)
...+
T Consensus 117 k~~I 120 (144)
T 1y8m_A 117 KSMV 120 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.02 Score=53.21 Aligned_cols=101 Identities=10% Similarity=-0.091 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 045355 376 PSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVI---------DLYSVKSRILKHAGDLAAAATLADEARCM--- 443 (900)
Q Consensus 376 ~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~---------~~~~~la~i~~~~G~~~eA~~~~~~al~l--- 443 (900)
|....|+++.-...+...|.|+.|+-..+.++....+++ +++..+|..++..|+|..|...|++|+++
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 445567788888888899999999999999776654333 37899999999999999999999998654
Q ss_pred ---CcC-------------------ChhHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 045355 444 ---DLA-------------------DRYVNSECVKRMLQADQVSLAEKTAALFTK 476 (900)
Q Consensus 444 ---dp~-------------------d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~ 476 (900)
.+. +..+..+++.++...+++++|+.++.-...
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111 115788999999999999999998876543
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.99 E-value=0.95 Score=41.67 Aligned_cols=213 Identities=14% Similarity=0.108 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355 12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR 91 (900)
Q Consensus 12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 91 (900)
+...+...++-.+|+.++-+..-. .|..++....++..++-.|.+..++-.+. .-+.....+....||...+
T Consensus 5 ~~~kI~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klK 76 (242)
T 3kae_A 5 LIGKICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKK 76 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHH
Confidence 455667788889999887544333 45556777788999999999999887764 3455666778899999999
Q ss_pred CHHHHHHHHHHHHh--hC---------------CCcHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045355 92 EYREAIKCYRNALR--ID---------------PDNIE-ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV 153 (900)
Q Consensus 92 ~~~eAi~~~~~al~--~~---------------p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (900)
+|..|+.+++..+. .+ |.+.+ .+..+|.++.+.|+.++|+..+.......|-.+..-..+
T Consensus 77 dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli-- 154 (242)
T 3kae_A 77 DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL-- 154 (242)
T ss_dssp CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH--
Confidence 99999999999993 22 23333 367789999999999999999999988877544321110
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHH-H
Q 045355 154 SHHL----NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKE-Q 228 (900)
Q Consensus 154 ~~~~----~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~-~ 228 (900)
+.. .-+.+... ..-.+.++ -+.+......+..... ...++.....|.-..... .
T Consensus 155 -yeN~vp~~~d~~~i~---~~~~~~i~------------~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~ 213 (242)
T 3kae_A 155 -LENKVPQKRDKENVR---QTGRRGIE------------EEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISN 213 (242)
T ss_dssp -HTTCCCCCC--------------CHH------------HHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHH
T ss_pred -hhcCCCcccchHHHH---hhhhccch------------hhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHH
Confidence 100 00000000 00000000 0011111111111111 334444555677555443 4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045355 229 EVSLLVKIGRLEEAAELYRALLSMNPD 255 (900)
Q Consensus 229 la~~~~~~g~~~eA~~~~~~al~~~p~ 255 (900)
.+..|+.+|-.++...+|..+-..+|.
T Consensus 214 aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 214 AARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 567788999999999999999888885
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.072 Score=62.74 Aligned_cols=110 Identities=8% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hC-CCHHHHHHHHHHHHHc--------CCCc----------HHHHHHH
Q 045355 25 YKKGLKAADAILKKFPEHGETLSMKGLTLN--CM-DRKSEAYELVRLGVKN--------DIKS----------HVCWHVY 83 (900)
Q Consensus 25 ~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~--~~-g~~~eA~~~~~~al~~--------~p~~----------~~~~~~l 83 (900)
++.|+..++++.+.+|.....+ ..+.+.. .. .+--+|+.++.++++. .+.+ ...++..
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 4667777777766666543322 2222211 11 2233455555555531 1111 1233344
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 045355 84 GLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135 (900)
Q Consensus 84 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (900)
+..+...|+|+-|+++-++|+...|.....|..|+.+|+.+|+|+.|+-.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 4455555666666666666666666666666666666666666666654443
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.55 E-value=0.95 Score=41.65 Aligned_cols=182 Identities=12% Similarity=-0.037 Sum_probs=111.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------------CCC
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN-----------------DIK 75 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----------------~p~ 75 (900)
+...+.+|-.|+|.+++-.+. .-+...+.+....||....++..|+..++..+.- +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 445677888999999987654 3456788899999999999999999999999932 233
Q ss_pred cHH-HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHH
Q 045355 76 SHV-CWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL-QAQMRDLTGFVETRQQLLTLKPNHR--MNWIGF 151 (900)
Q Consensus 76 ~~~-~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l 151 (900)
+.+ .+..+|.++...|+.+||+..|.......|-.+.+-..+-.- --+..|.+..+. .+..+. +.+...
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~-------~~~~~i~~~y~~d~ 184 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQ-------TGRRGIEEEYVSDS 184 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHh-------hhhccchhhhhhhH
Confidence 333 467889999999999999999999999888655443211100 000111111110 011111 011111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 045355 152 AVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCE-HGEMLLYKISLLEECGSFERALAEMHKKESKIVD 221 (900)
Q Consensus 152 a~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~ 221 (900)
...+..... +.++.|..-+ |. -+-.....+..+...|..++...+|...-..+|.
T Consensus 185 ~~lHe~~s~-----~~ikkY~n~i----------PGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 185 IEFHESLSP-----SLVKKYMEHV----------PGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHCCH-----HHHHHHHTST----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccH-----HHHHHHHHhC----------CCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 111111111 2224444322 11 1234446677888999999999999888877774
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.45 E-value=0.48 Score=51.33 Aligned_cols=170 Identities=11% Similarity=0.015 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHH----
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDNI-----EILRDLSLLQAQ-MRDLTGFVETRQQLLTLKPNHRMNW---- 148 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~---- 148 (900)
+.+.+|.+|...|++++-..++......-+.-+ .+.+.+...+.. -+..+.-++....+++...+....|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555544332221111 112222222222 1223333444444444322222223
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CC-
Q 045355 149 --IGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKI----VD- 221 (900)
Q Consensus 149 --~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~----p~- 221 (900)
..+|..|...|+|.+|...+....+-+.... + .....+++.....+|...|++.++...+.++.... ++
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLD--D--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--C--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--c--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 3789999999999999988887776665321 1 15667888999999999999999999999886542 22
Q ss_pred --HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 045355 222 --KLAYKEQEVSLLV-KIGRLEEAAELYRALLSM 252 (900)
Q Consensus 222 --~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~ 252 (900)
...+...-|.+++ ..++|..|...|-++++.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 3456667788888 899999999999888743
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.26 E-value=5.8 Score=45.71 Aligned_cols=130 Identities=8% Similarity=0.025 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD--RKSEAYELVRLGVKNDIKSHVCWHVYGL 85 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~lg~ 85 (900)
.+...|..+...+..|++..+...... +..+|-.+.. ..-.+....+ ... -+...+...|+.+........
T Consensus 5 ~~~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~~yl--~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~ 77 (618)
T 1qsa_A 5 EQRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYPYL--EYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSR 77 (618)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHHHH--HHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcHHHH--HHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHH
Confidence 456789999999999999877666544 3345542222 2222222222 333 344556667887766544443
Q ss_pred H---HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 86 L---YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 86 ~---~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
. +...+++..-+..|.. .|.+.......+......|+-.+|......+.......+...
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c 139 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNAC 139 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHH
T ss_pred HHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHH
Confidence 3 3345677766665443 377888888888888889998888777777766554444433
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.15 E-value=4.4 Score=43.72 Aligned_cols=193 Identities=11% Similarity=-0.066 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHh-CCCHHHHHHHHHHHHHcCCCcHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLS-----MKGLTLNC-MDRKSEAYELVRLGVKNDIKSHVCW 80 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~-----~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~ 80 (900)
.++.+++..|..+...|++++-..++.......+.-+.+.. .+-..+.. -+..+.-++++..+++-.-+....|
T Consensus 17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999988888776543333322222 11222222 3555666666666665322221222
Q ss_pred ------HHHHHHHHhccCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCH
Q 045355 81 ------HVYGLLYRSDREYREAIKCYRNALRIDPD------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK---PNHR 145 (900)
Q Consensus 81 ------~~lg~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~ 145 (900)
..+|.+|...|+|.+|.+.+.+.++.-.. -.+++.....+|...+++..+...+.++.... +.++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 36899999999999999998887764211 23456677788888999999999888886543 1222
Q ss_pred ----HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCC
Q 045355 146 ----MNWIGFAVSHH-LNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGS 204 (900)
Q Consensus 146 ----~~~~~la~~~~-~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 204 (900)
.....-|..+. ..++|..|.. .|.+++..-..... +....+..+++.+-.-.++
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~---~F~eaf~~f~~~~~--~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFS---YFYEAFEGFDSVDS--VKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHH---HHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHH---HHHHHHhccccccc--HHHHHHHHHHHHHHHHcCC
Confidence 23345567777 7899998884 44434322111111 3334455555555555554
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.99 E-value=6.9 Score=45.09 Aligned_cols=127 Identities=10% Similarity=-0.002 Sum_probs=68.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 045355 152 AVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVS 231 (900)
Q Consensus 152 a~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~ 231 (900)
+.......+.+.|...+....+....+ . .+.......++.-+...+...++...+.+......++.. ...++.
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~----~--~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r 293 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLN----E--DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVR 293 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCC----H--HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCC----H--HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHH
Confidence 444444467777776665554332211 0 222233334444444445355666666665554444333 333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHH
Q 045355 232 LLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQ 293 (900)
Q Consensus 232 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 293 (900)
..++.|+++.|...|..+-...+......+=++..+ ...|+.+++..+|..+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~--------~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL--------LERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHH--------HHcCCHHHHHHHHHHHhc
Confidence 455678888888888766553334444444444443 236778888888888764
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.86 E-value=0.61 Score=56.21 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=63.4
Q ss_pred HHhhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q 045355 19 SYETKQYKKGLK-AADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAI 97 (900)
Q Consensus 19 ~~~~g~~~~Al~-~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi 97 (900)
....+++++|.. .+. .-|+ ...+......+...|.+++|++..+ + +.. .-.+....|++++|.
T Consensus 609 ~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~---~~~---~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP-----D---QDQ---KFELALKVGQLTLAR 672 (814)
T ss_dssp HHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----C---HHH---HHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC-----C---cch---heehhhhcCCHHHHH
Confidence 346788888866 441 1110 1222555566777888888776553 1 111 123456778888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 045355 98 KCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQL 137 (900)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (900)
++.+ ..++...|..+|..+.+.|+++.|..+|.++
T Consensus 673 ~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8753 3356788888888888888888888888875
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.87 Score=42.97 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045355 42 HGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ 121 (900)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~ 121 (900)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..||+++-. +-.+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 444444443 4567777777776654 4566777777777777777777777776421 23344455
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045355 122 AQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEIL 168 (900)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 168 (900)
...|+.++-...-+.+.... + +.....++..+|+++++++++
T Consensus 71 ~~tg~~e~L~kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHH
Confidence 55565544433333322211 1 122233455566666666433
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.32 Score=57.27 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=84.6
Q ss_pred hCCC-HHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHhc-cCHHHHHHHHHHHHhh--------CCCc----------HHH
Q 045355 55 CMDR-KSEAYELVRLGVKNDIKSHVCWHVY-GLLYRSD-REYREAIKCYRNALRI--------DPDN----------IEI 113 (900)
Q Consensus 55 ~~g~-~~eA~~~~~~al~~~p~~~~~~~~l-g~~~~~~-g~~~eAi~~~~~al~~--------~p~~----------~~~ 113 (900)
..|+ ++.|+.++++....+|.....+... ..+.... .+--+|+....++++. .+.+ ...
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3455 5889999999999998765433221 1122222 3345677777776632 2232 224
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 114 LRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
+..-+..++..|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.|..
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 555567778899999999999999999999999999999999999999999966655
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.64 E-value=1.2 Score=53.50 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHH-hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSY-ETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~-~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
..+..++ ..|.++.|+...+ ++...+ ......|++++|.++.+ ..++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 4444444 3466666665442 233333 34567899999999864 34667899999999999999
Q ss_pred HHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 045355 93 YREAIKCYRNALR--------IDPDNIEILRDLSLLQAQMRDLTGFVETRQ 135 (900)
Q Consensus 93 ~~eAi~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (900)
++.|+.+|.++-. ....+...+..++......|++..|...|.
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 9999999998621 113344444555555555555555554443
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.06 E-value=1 Score=45.45 Aligned_cols=60 Identities=15% Similarity=-0.038 Sum_probs=35.9
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcH
Q 045355 18 KSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSH 77 (900)
Q Consensus 18 ~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 77 (900)
.++..|+.++|+..+...++.+|.+......+...++-.|+++.|..-++.+.+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 445556666666666666666666666666666666666666666666666666665543
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.05 E-value=2 Score=40.49 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=72.2
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHH
Q 045355 390 YDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEK 469 (900)
Q Consensus 390 y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~ 469 (900)
....|+++.|.+..+.. ++...|..+|......|+++-|.++|.++-.. ..+..++.-.|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHH
Confidence 34689999999998765 57889999999999999999999999987654 234455556788777666
Q ss_pred HHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 045355 470 TAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLA 515 (900)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~ 515 (900)
+.......++.. ....+++-+|+++++++.|.+
T Consensus 82 la~iA~~~g~~n-------------~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTREDFG-------------SMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTCHH-------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCccHH-------------HHHHHHHHcCCHHHHHHHHHH
Confidence 655554433311 234556677777777777743
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=5.8 Score=43.86 Aligned_cols=203 Identities=10% Similarity=-0.025 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILKK------FPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHV 82 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 82 (900)
-...+..+..+ ..|+++.|+..+-.+-+. .+....+...+..++...|+++...+++.-..+.......+-..
T Consensus 17 ~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 17 LKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555666554 458899999887655443 23346678888889999999999888776555443332222211
Q ss_pred HHH---HHH-hccCHHHHHHHHHHHHhhC----CC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC-
Q 045355 83 YGL---LYR-SDREYREAIKCYRNALRID----PD-------NIEILRDLSLLQAQMRDLTGFVETRQQLLTLK--PNH- 144 (900)
Q Consensus 83 lg~---~~~-~~g~~~eAi~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 144 (900)
+.. -|. .....+... ....+..- .+ .......|+.++...|++.+|...+..+..-. ..+
T Consensus 96 ~V~~~~~~l~~~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHhcCCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 111 111 112212111 11222111 11 23456789999999999999999999876421 111
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045355 145 ---RMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKES 217 (900)
Q Consensus 145 ---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~ 217 (900)
.+.+.....++...+++..|...+..........+.+ . ......+...|.++...++|.+|-.+|..++.
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~-~--~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY-E--SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC-H--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc-H--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3567778888999999999987666654322211110 0 12334555666666667777777666666543
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=6 Score=43.71 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH---H-HhcC
Q 045355 57 DRKSEAYELVRLGVKN------DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ---A-QMRD 126 (900)
Q Consensus 57 g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~---~-~~g~ 126 (900)
|++++|++.+....+. .+....+...+..++...|+|+...+.+.-..+.......+...+.... . ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677787766443331 2334566777888899999999888877655544443333332222221 1 1121
Q ss_pred HHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHH
Q 045355 127 LTGFVETRQQLLTL----KPN-------HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYK 195 (900)
Q Consensus 127 ~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l 195 (900)
.+ .+.....+.. ..+ .......++.++...|++.+|..++.....-... ........+.++..
T Consensus 110 ~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~----~~~~~~kve~~l~q 183 (445)
T 4b4t_P 110 LD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG----SMEMSEKIQFILEQ 183 (445)
T ss_dssp TH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS----SSCHHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHH
Confidence 11 1122222221 111 1234567899999999999999888876533221 11225677899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh----hcCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355 196 ISLLEECGSFERALAEMHKKES----KIVD---KLAYKEQEVSLLVKIGRLEEAAELYRALLSM 252 (900)
Q Consensus 196 a~~~~~~g~~~~Al~~l~~al~----~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 252 (900)
.+++...+++.+|...+.++.. ..+. ...++...|.++...++|.+|..+|..++..
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999998743 1221 3467788999999999999999999998864
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.04 E-value=2 Score=43.32 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=48.8
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 045355 87 YRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRM 146 (900)
Q Consensus 87 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (900)
..+.|+.++|+......++.+|.|......+..+++-.|+|+.|...++.+.+++|....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456788888888888888888888888888888888888888888888888888887644
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.77 E-value=1.3 Score=53.20 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--cCCHH
Q 045355 146 MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESK--IVDKL 223 (900)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~--~p~~~ 223 (900)
..+..+...+.+.|+.++|..++..+.+.......+ +...|..+...|.+.|+.++|++.|+++... .|+ .
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-v 200 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-L 200 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-H
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-H
Confidence 457788888999999999998887776543322222 2368888999999999999999999998764 455 5
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 045355 224 AYKEQEVSLLVKIGR-LEEAAELYRALLSMN 253 (900)
Q Consensus 224 ~~~~~la~~~~~~g~-~~eA~~~~~~al~~~ 253 (900)
..|..+..++.+.|+ .++|..+++++.+..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 556667778888888 478899999998876
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.71 E-value=1.7 Score=47.27 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=76.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355 14 KLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEA-YELVRLGVKNDIKSHVCWHVYGLLYRSDRE 92 (900)
Q Consensus 14 ~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 92 (900)
..+......|+...|...+.+++....... +... ..+.+-.+ ...+++. ...+...++..+...|+
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~--L~~~-----~~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPV--LDDL-----RDFQFVEPFATALVED------KVLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSST--TGGG-----TTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCC--CCCC-----CchhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCC
Confidence 334444556888889999999888653321 0000 00112111 1112111 11245567788889999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 045355 93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLT 139 (900)
Q Consensus 93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (900)
+.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887754
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.70 E-value=3.8 Score=51.47 Aligned_cols=186 Identities=13% Similarity=0.036 Sum_probs=106.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----------------------CC
Q 045355 52 TLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRI-----------------------DP 108 (900)
Q Consensus 52 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~-----------------------~p 108 (900)
.+...|.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.- ..
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 3444455544433 22344556666677788888888888888877765211 11
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCc
Q 045355 109 DNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNH-R----MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDN 183 (900)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~ 183 (900)
..+..|..+..++.+.+.++.+++..+.+++..+.+ . ..|..+-..+...|+|++|...|......
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--------- 967 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--------- 967 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---------
Confidence 123456777788888899999999988888865433 2 25677777788889999998666443211
Q ss_pred chhchhHHHHHHHHHHHHcCCHHH------------HHHHHHHHh-hh-cCC-HHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 045355 184 ERCEHGEMLLYKISLLEECGSFER------------ALAEMHKKE-SK-IVD-KLAYKEQEVSLLVKIGRLEE-AAELYR 247 (900)
Q Consensus 184 ~~~~~~~~~~~la~~~~~~g~~~~------------Al~~l~~al-~~-~p~-~~~~~~~la~~~~~~g~~~e-A~~~~~ 247 (900)
......+..+...+.+.|..+. ..+.+..-. .. ++. .+.++..+=..+...|++.. |...|+
T Consensus 968 --~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 968 --PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp --SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 1112444455555555554433 223332211 11 111 12344444455666677754 455666
Q ss_pred HHHHh
Q 045355 248 ALLSM 252 (900)
Q Consensus 248 ~al~~ 252 (900)
.+.++
T Consensus 1046 ~~~RL 1050 (1139)
T 4fhn_B 1046 KLSRY 1050 (1139)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.51 E-value=0.74 Score=51.60 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045355 78 VCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHH 156 (900)
Q Consensus 78 ~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (900)
.++..+|.+.+....+..|..+|.+|+.+.|++...+..||.+....|+.-+|+-+|.+++......+.++.++...+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999999999999999999999999887778888777766554
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.71 Score=51.37 Aligned_cols=136 Identities=8% Similarity=-0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------cCCCchHHHHHHHHHHHHcCCHHHHH----------HHHHH
Q 045355 381 WTLFFLAQHYDRRGQYDVALSKIDEAIE-----------HTPTVIDLYSVKSRILKHAGDLAAAA----------TLADE 439 (900)
Q Consensus 381 ~a~~~la~~y~~~g~~~~Al~~~~~al~-----------~~P~~~~~~~~la~i~~~~G~~~eA~----------~~~~~ 439 (900)
+.+...-..+...+++++|.++....+. .++-...+|+..++++...|+..... ..+-.
T Consensus 137 y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~ 216 (523)
T 4b4t_S 137 FMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK 216 (523)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence 3333444445568899999888776651 13345667888888888888776532 12222
Q ss_pred HH-----hcCcCCh-hHHHHHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 045355 440 AR-----CMDLADR-YVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKF 513 (900)
Q Consensus 440 al-----~ldp~d~-~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~ 513 (900)
++ ..|+... .+.+.+...|+..+.++.|..++++..- |.......|..-|.+-+|.++.-+++|.+|.+.+
T Consensus 217 ~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 217 FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22 2244333 6777888899999999999999987653 2233344677788899999999999999999988
Q ss_pred HHHHHH
Q 045355 514 LAVEKH 519 (900)
Q Consensus 514 ~~v~~~ 519 (900)
..+.+.
T Consensus 294 ~~A~rk 299 (523)
T 4b4t_S 294 IAAIRK 299 (523)
T ss_dssp HHHTSS
T ss_pred HHHHHh
Confidence 655443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.80 E-value=2.2 Score=46.38 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 045355 112 EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLE 176 (900)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~ 176 (900)
.+...++..+...|++.+++..+..++..+|-+...|..+..+++..|+..+|+..+..+.+.+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999888887764
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.63 E-value=3.3 Score=49.66 Aligned_cols=129 Identities=9% Similarity=-0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045355 80 WHVYGLLYRSDREYREAIKCYRNALRIDPDNI--EILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHL 157 (900)
Q Consensus 80 ~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (900)
...+|.++...++ ++++..+...+..+.... .+-..+|.++.-.|+-+-....+..+.....+...-...+|..+..
T Consensus 458 aLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 458 SLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 3455555554444 344555555554322111 1233445555555554444444443333222222222233333344
Q ss_pred cCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045355 158 NSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKES 217 (900)
Q Consensus 158 ~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~ 217 (900)
.|+.+.+..+++.+... .++ .-...+.+.+|..|...|+.......+..+..
T Consensus 537 ~g~~e~~~~li~~L~~~--~dp------~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 537 YGRQELADDLITKMLAS--DES------LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTCGGGGHHHHHHHHHC--SCH------HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhC--CCH------HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 55555554333332211 000 12223334455555566664433334444443
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.53 E-value=2 Score=51.71 Aligned_cols=98 Identities=7% Similarity=-0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q 045355 44 ETLSMKGLTLNCMDRKSEAYELVRLGVKN----DIKSHVCWHVYGLLYRSDREYREAIKCYRNALRID-PDNIEILRDLS 118 (900)
Q Consensus 44 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~la 118 (900)
.++..+-..|.+.|+.++|..+|....+. -.-+...|..+...|.+.|+.++|.+.|++..+.. .-|...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 36777888899999999999999765432 23356788889999999999999999999987764 23677788888
Q ss_pred HHHHHhcCH-HHHHHHHHHHHHhC
Q 045355 119 LLQAQMRDL-TGFVETRQQLLTLK 141 (900)
Q Consensus 119 ~~~~~~g~~-~~A~~~~~~al~~~ 141 (900)
.++.+.|+. +.|.+.++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888874 78889999888753
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.49 E-value=1.3 Score=48.95 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCh----hHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTP---TVIDLYSVKSRILKHAGDLAAAATLADEARCM--DLADR----YVNS 452 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P---~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l--dp~d~----~l~~ 452 (900)
++..+|.+|...|++++|.+.|.++..... ...++++...+++...|++..+...+.++..+ ...|+ .+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567899999999999999999999987654 55789999999999999999999999999766 22232 4455
Q ss_pred HHHHHHHHcCChHHHHHHH
Q 045355 453 ECVKRMLQADQVSLAEKTA 471 (900)
Q Consensus 453 ~~a~~~l~~g~~eeA~~~~ 471 (900)
..+.+++..+++.+|-..+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHH
Confidence 5677778889999987655
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.22 E-value=1.2 Score=49.81 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045355 45 TLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQ 123 (900)
Q Consensus 45 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~ 123 (900)
.+..+|.+......+..|..+|.+|+.+.|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4567888888888999999999999999999999999999999999999999999999998877788888888776654
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.60 E-value=48 Score=39.79 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHH-
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQ- 460 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~- 460 (900)
+-+.+|..|...|+...-...+..+.....+++.-...+|..+...|+.+.+...++...+ -.|+.+...++..+-.
T Consensus 562 aa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli 639 (963)
T 4ady_A 562 GAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIA 639 (963)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 4566788888899965555577776655444444334444444456665444444433222 2345454444433322
Q ss_pred -cCC-hHHHHHHHHHhcccCC
Q 045355 461 -ADQ-VSLAEKTAALFTKDGD 479 (900)
Q Consensus 461 -~g~-~eeA~~~~~~~~~~~~ 479 (900)
.|+ ..++++++..+..+.+
T Consensus 640 ~aGn~~~~aid~L~~L~~D~d 660 (963)
T 4ady_A 640 CAGKGLQSAIDVLDPLTKDPV 660 (963)
T ss_dssp TSSSCCHHHHHHHHHHHTCSS
T ss_pred ccCCCcHHHHHHHHHHccCCC
Confidence 333 3678888888876544
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.09 E-value=5.5 Score=43.80 Aligned_cols=104 Identities=14% Similarity=-0.002 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhc
Q 045355 111 IEILRDLSLLQAQMRDLTGFVETRQQLLTLKPN---HRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCE 187 (900)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~ 187 (900)
..++..+|..|...|++++|.+.|.++...... -.+.+.....++...+++..+...+......+..... . ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d--~--~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD--W--ER 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC--T--HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC--H--HH
Confidence 345677888888888888888888877764322 2356667777777778888887666666555443321 1 22
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 045355 188 HGEMLLYKISLLEECGSFERALAEMHKKESK 218 (900)
Q Consensus 188 ~~~~~~~la~~~~~~g~~~~Al~~l~~al~~ 218 (900)
......+.|.++...++|..|...|-.++..
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2345556677777778888888777766543
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.77 E-value=5.4 Score=50.03 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=98.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---C--------------------
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN---D-------------------- 73 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~-------------------- 73 (900)
..+...++++-+.. .+...|.++...+++|.++...|++++|..+|+++-.. +
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34555666655443 45567888888899999999999999999999987421 0
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC-CcHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 045355 74 IKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDP-DNIE----ILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNW 148 (900)
Q Consensus 74 p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (900)
...+..|.....++...+.++.+++.-+.|+...+ ++.. .|..+-..+...|+|++|...+...-.. ......+
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cL 974 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCL 974 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHH
Confidence 01123566677788899999999999999998764 3332 5777888899999999998877554321 2233445
Q ss_pred HHHHHHHHHcCCHH
Q 045355 149 IGFAVSHHLNSNGS 162 (900)
Q Consensus 149 ~~la~~~~~~g~~~ 162 (900)
..+....+..|..+
T Consensus 975 r~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 975 LDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCCChh
Confidence 55555555444443
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.10 E-value=36 Score=35.57 Aligned_cols=170 Identities=11% Similarity=0.016 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 045355 6 PSKDANLFKLIVKSYETKQY---KKGLKAADAILKKF------PEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN---- 72 (900)
Q Consensus 6 ~~~~~~l~~~a~~~~~~g~~---~~Al~~~~~~l~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---- 72 (900)
+.+....+.+.......|+| =+|.+.++.+.... .+-.+.++.-+..+...|+...|.++..-.++.
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~ 88 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA 88 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 34556677777888888888 77877777665421 122345556667777778777776665444331
Q ss_pred -CCCcHHHHHHHHHHHHhccC--------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHH--------
Q 045355 73 -DIKSHVCWHVYGLLYRSDRE--------YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQ-------- 135 (900)
Q Consensus 73 -~p~~~~~~~~lg~~~~~~g~--------~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-------- 135 (900)
.+-+......+..++..... ..+|+++-.+.=...-.++..+..+|..+...+++.+|...|-
T Consensus 89 ~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~ 168 (336)
T 3lpz_A 89 GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE 168 (336)
T ss_dssp TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence 12223344455555554443 1233333332111123578888999999999999888876651
Q ss_pred ---HHH-----HhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhh
Q 045355 136 ---QLL-----TLKPNHRMNWIGFAVS-HHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 136 ---~al-----~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~~~~~l 175 (900)
.++ +..|.....+...+.+ |...++...|...+..|.+.+
T Consensus 169 ~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 169 VLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111 1124444555555544 566799999998888887654
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.60 E-value=3 Score=46.34 Aligned_cols=67 Identities=15% Similarity=0.007 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESK-----IVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDN 256 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 256 (900)
.++..+-+.|...+.+++|.....+..-. +.....+++.+|.++.-.++|.+|...+..++...|.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44445555555555555555555555211 11123455556666666666666666666666665544
No 264
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=79.20 E-value=3.2 Score=33.68 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHHHhc-------CcCCh---hHHHHHHHHHHHcC
Q 045355 426 HAGDLAAAATLADEARCM-------DLADR---YVNSECVKRMLQAD 462 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l-------dp~d~---~l~~~~a~~~l~~g 462 (900)
..|++++|+.+|.++++. .|+.. .+..++..|+.|+.
T Consensus 31 ~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE 77 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE 77 (83)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443 34332 56777777765543
No 265
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.24 E-value=3.6 Score=34.28 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHcCChHHH
Q 045355 449 YVNSECVKRMLQADQVSLA 467 (900)
Q Consensus 449 ~l~~~~a~~~l~~g~~eeA 467 (900)
.+..++..|+.|+..+...
T Consensus 60 ~l~~K~~eYl~RAE~LK~~ 78 (93)
T 1wfd_A 60 VLRTKISGYMDRAENIKKY 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777788887665544433
No 266
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.40 E-value=8 Score=31.33 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHHHhc-------CcCCh---hHHHHHHHHHHHc
Q 045355 426 HAGDLAAAATLADEARCM-------DLADR---YVNSECVKRMLQA 461 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l-------dp~d~---~l~~~~a~~~l~~ 461 (900)
..|++++|+.+|..+++. .|+.. .+..++..|+.|+
T Consensus 23 ~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RA 68 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68 (83)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 556666666555555543 44333 5667777776543
No 267
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=66.60 E-value=6.7 Score=31.94 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHHHHhc-------CcCC--h-hHHHHHHHHHHHcCChH
Q 045355 426 HAGDLAAAATLADEARCM-------DLAD--R-YVNSECVKRMLQADQVS 465 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al~l-------dp~d--~-~l~~~~a~~~l~~g~~e 465 (900)
..|++++|+.+|..++++ .|+. + .+..++..|+.|+..+.
T Consensus 25 ~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk 74 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLK 74 (85)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555543 3322 2 56667777765554443
No 268
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=64.81 E-value=0.0043 Score=67.47 Aligned_cols=343 Identities=13% Similarity=0.109 Sum_probs=169.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNG 161 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (900)
..|.-++..|.|+.|.-+|... .-|..|+.++..+|+|.+|++..+++ +++..|-....+....+.+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHH
Confidence 3455555555555554444221 12456777778888888887766543 5677788888888888888
Q ss_pred HHHHHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHH
Q 045355 162 SKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEE 241 (900)
Q Consensus 162 ~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 241 (900)
.-|. -+-...+-.. +-+-.+...|...|.+++-+..++..+....-.......+|.+|.+- ++++
T Consensus 216 rLAq---icGLniIvha-----------deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 216 RLAQ---MCGLHIVVHA-----------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp TTTT---HHHHHHHCCS-----------SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHH---HhcchhcccH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 7775 2222222111 11112345567788889999999998887777788888888877664 3444
Q ss_pred HHHHHHHHHHh-C-CCC------HHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchH
Q 045355 242 AAELYRALLSM-N-PDN------YSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEK 313 (900)
Q Consensus 242 A~~~~~~al~~-~-p~~------~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~ 313 (900)
-.+.++.-..+ | |.- ...|..+..+| ..-++++.|....-.-....-+....+.+.......+-
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY--------~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~Ei 352 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY--------DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 352 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHH--------HHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHH--------hcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHH
Confidence 44443322111 1 211 12233333333 11233333322111000000012233344444445666
Q ss_pred HHHHHHHhHHhhhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 045355 314 FREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRR 393 (900)
Q Consensus 314 ~~~a~~~~~~~~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~ 393 (900)
+-+++..|++. .|..+.+|-......-+....-..+..... +.....+-.+....+.... --.+-.+|...
T Consensus 353 yYKAi~FYL~e-----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~-LpLIkpYL~~Vq~~N~~aV---NeAln~L~IEE 423 (624)
T 3lvg_A 353 YYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ-LPLVKPYLRSVQNHNNKSV---NESLNNLFITE 423 (624)
T ss_dssp HHHHHHHHTTS-----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTC-GGGGTGGGTSCCCSCCHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----ChHHHHHHHHhccccCChHHHHHHHHhcCC-chhhHHHHHHHHHhhHHHH---HHHHHHHHhhh
Confidence 66777766543 355555544443332222222222211110 1111111111122222222 22334667777
Q ss_pred CCHHHHHHHHHHH-----------HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcC
Q 045355 394 GQYDVALSKIDEA-----------IEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQAD 462 (900)
Q Consensus 394 g~~~~Al~~~~~a-----------l~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g 462 (900)
.||+.=...++.. ++. -...+....-|.+|.+.++|.+|++ +..+|... .-+.......|
T Consensus 424 EDy~~LR~SId~ydNFD~i~LA~rLEk-HeL~eFRrIAA~LYkkn~rw~qsi~-------l~KkDkly-kDAietAa~S~ 494 (624)
T 3lvg_A 424 EDYQALRTSIDAYDNFDNISLAQRLEK-HELIEFRRIAAYLFKGNNRWKQSVE-------LCKKDSLY-KDAMQYASESK 494 (624)
T ss_dssp TCCHHHHHTTSSCCCSCTTHHHHHHHT-CSSHHHHHHHHHHHHTTCHHHHHSS-------CSSTTCCT-TGGGTTTTTCC
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHhh-CchHHHHHHHHHHHHhcccHHHHHH-------HHHhcccH-HHHHHHHHHcC
Confidence 7776433222210 111 1455666777888888888776654 43344311 11122233457
Q ss_pred ChHHHHHHHHHhcccC
Q 045355 463 QVSLAEKTAALFTKDG 478 (900)
Q Consensus 463 ~~eeA~~~~~~~~~~~ 478 (900)
+.+-|++++..|...+
T Consensus 495 ~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 495 DTELAEELLQWFLQEE 510 (624)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7777788888777643
No 269
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=62.90 E-value=29 Score=28.19 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHcCChH
Q 045355 449 YVNSECVKRMLQADQVS 465 (900)
Q Consensus 449 ~l~~~~a~~~l~~g~~e 465 (900)
.+..++..|+-|+..+.
T Consensus 61 ~lr~K~~eYl~RAE~LK 77 (86)
T 4a5x_A 61 NLREKISKYMDRAENIK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666677765544433
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=61.93 E-value=13 Score=32.37 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred HcCCHHHHHHHHHHHH-------hcCcCCh----hHHHHHHHHHHHcCChHH
Q 045355 426 HAGDLAAAATLADEAR-------CMDLADR----YVNSECVKRMLQADQVSL 466 (900)
Q Consensus 426 ~~G~~~eA~~~~~~al-------~ldp~d~----~l~~~~a~~~l~~g~~ee 466 (900)
..|++++|+.+|..++ ...+.+. .+..++..|+.|+..+..
T Consensus 30 ~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 3443343 566777777755544443
No 271
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=57.73 E-value=1.5e+02 Score=29.13 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 045355 343 QPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAI 407 (900)
Q Consensus 343 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al 407 (900)
...+....+.....|..+....... ..+.+|..+..++.+-.-.|.-+++.++|.....+|+
T Consensus 142 g~~r~~~~e~a~~aY~~A~~iA~~~---L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 142 GDDKKRIIDSARSAYQEAMDISKKE---MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhh---CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445555555555544322110 1223444444444443344445667776666555543
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.24 E-value=80 Score=38.43 Aligned_cols=111 Identities=9% Similarity=-0.041 Sum_probs=55.9
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCc--HHHHHHHHHHHHhccCH
Q 045355 17 VKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKN-DIKS--HVCWHVYGLLYRSDREY 93 (900)
Q Consensus 17 ~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~--~~~~~~lg~~~~~~g~~ 93 (900)
..+...|.++-+. ..+..-|.++-.-+.+|.++...|++++|..+|++|-.- ...+ .........+.
T Consensus 818 ~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll------ 887 (950)
T 4gq2_M 818 EKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA------ 887 (950)
T ss_dssp HHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH------
T ss_pred HHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc------
Confidence 3444445554332 234455556555566666666666666666666655421 0000 00000000000
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCH
Q 045355 94 REAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTL-KPNHR 145 (900)
Q Consensus 94 ~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~ 145 (900)
...+........|...+.++.+.+-++-+++..+.++.. .+++.
T Consensus 888 --------~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 888 --------EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp --------HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred --------CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 000011112346777788888888888888888888864 34444
No 273
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=54.11 E-value=1.8e+02 Score=29.00 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 045355 346 KADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIE 408 (900)
Q Consensus 346 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~ 408 (900)
+....+.....|..+.... .. ..+.+|..+..++.+-.-.|.-+++.++|.....+|+.
T Consensus 168 r~~~~e~a~~aY~~A~~iA-~~---L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 168 KQSSAEDALKAYKDATVVA-KD---LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-Hh---CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345556666666666554 21 12334544444444444444457777777776666553
No 274
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=50.77 E-value=1.4e+02 Score=29.73 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKI 219 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~ 219 (900)
+-+.+++.+..+.++|++...++.++....
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 445566777777777777777777766654
No 275
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.62 E-value=73 Score=34.86 Aligned_cols=97 Identities=6% Similarity=-0.109 Sum_probs=64.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhch
Q 045355 125 RDLTGFVETRQQLLTLKPNHR----------------MNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEH 188 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~ 188 (900)
...+++...+.+++...-++. .....+-.+|++.|+...+..++..++..-...+.......+.
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 346677777788777532211 1123456789999999999877776655421001111122456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCC
Q 045355 189 GEMLLYKISLLEECGSFERALAEMHKKESK-IVD 221 (900)
Q Consensus 189 ~~~~~~la~~~~~~g~~~~Al~~l~~al~~-~p~ 221 (900)
....+++|.++...++|.+|.+++..|+.. .|.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 677888999999999999999999998887 664
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.97 E-value=1e+02 Score=37.48 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=38.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 045355 49 KGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNAL 104 (900)
Q Consensus 49 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al 104 (900)
+...+...|.++-|. ..+..-|.++..-+.+|.+|...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455566677776543 3455667777777889999999999999999998864
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.25 E-value=67 Score=29.52 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPE 41 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~ 41 (900)
..|..+..+|..|+|=+|-+.++.+....+.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~ 64 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGR 64 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Confidence 4567777777777887777777777765544
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.51 E-value=2.8e+02 Score=28.48 Aligned_cols=131 Identities=7% Similarity=-0.049 Sum_probs=69.0
Q ss_pred CCChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Q 045355 4 SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKF---P---EHGETLSMKGLTLNCMDRKSEAYELVRLGVKN----- 72 (900)
Q Consensus 4 ~l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~---p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----- 72 (900)
.+.++-...+.+.....+.|+|=+|.+.++.+.... . +-.+.++.-+..+...|+...|.++..-.++.
T Consensus 8 ~m~~~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~ 87 (312)
T 2wpv_A 8 AVQAKLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 355566777888888899999999999888765421 1 12334455566666677776666654333321
Q ss_pred CCCcHHHHHHHHHHHHhccCHH-HHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 045355 73 DIKSHVCWHVYGLLYRSDREYR-EAIKCYRNALRI-------DPDNIEILRDLSLLQAQMRDLTGFVETR 134 (900)
Q Consensus 73 ~p~~~~~~~~lg~~~~~~g~~~-eAi~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (900)
.+-+......+..++.....-+ .=.+..+++++. .-.++..+..+|..+...|++.+|...|
T Consensus 88 ~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 88 VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 1222333334444443322111 011222222221 1235666777777777766666655544
No 279
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=44.46 E-value=1.6e+02 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKIV 220 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~p 220 (900)
+-+.+++.+..+.++|++...+.+++.+.++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~ 62 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV 62 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 4555666666667777777776666665544
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.77 E-value=3e+02 Score=28.59 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=71.8
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHH-------HH---------hhCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Q 045355 75 KSHVCWHVYGLLYRSDREYREAIKCYRN-------AL---------RIDPDNIEILRDLSL-LQAQMRDLTGFVETRQQL 137 (900)
Q Consensus 75 ~~~~~~~~lg~~~~~~g~~~eAi~~~~~-------al---------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 137 (900)
.++..++.+|..|...+++.+|...|-- .+ ...|.....+...+. .|...++...|...+...
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4677889999999999999999887721 00 112333444444443 467789999998876655
Q ss_pred HH----hCCC------------------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCCCCcchhchhHHHHH
Q 045355 138 LT----LKPN------------------HRM-NWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLY 194 (900)
Q Consensus 138 l~----~~p~------------------~~~-~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (900)
.+ ..|. .+. ....+...-+..+....-..+.+.|...++.++ +.....+-.
T Consensus 214 ~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~------~~~~~~L~~ 287 (336)
T 3lpz_A 214 TSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELN------GIWDTALEL 287 (336)
T ss_dssp HHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTT------TTTHHHHHH
T ss_pred HHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcH------HHHHHHHHH
Confidence 53 2232 222 233444445556766555555566666665542 133455556
Q ss_pred HHHHHHH
Q 045355 195 KISLLEE 201 (900)
Q Consensus 195 la~~~~~ 201 (900)
+|.+|+.
T Consensus 288 IG~~YFg 294 (336)
T 3lpz_A 288 IAEMYFG 294 (336)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 6666654
No 281
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=41.29 E-value=1.6e+02 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 045355 190 EMLLYKISLLEECGSFERALAEMHKKESKIV 220 (900)
Q Consensus 190 ~~~~~la~~~~~~g~~~~Al~~l~~al~~~p 220 (900)
+-+.+++.+..+.++|++...++.++....+
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~ 36 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV 36 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccC
Confidence 3455666777777777777777777666544
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.29 E-value=2.5e+02 Score=26.73 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 045355 378 TLLWTLFFLAQHYDRRGQYDVALSKIDEAIEH--TPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLA 446 (900)
Q Consensus 378 ~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~--~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~ 446 (900)
.++-+|...+..+ ..++...+.++|.-.... .-..+..|...|..+...|++.+|.++|+.+++..-.
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3333444444443 244577889998887764 4478889999999999999999999999999987543
No 283
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=37.83 E-value=34 Score=27.64 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
.+...++..|+..-..|+|++|+.+|..++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455667777777677777777777777654
No 284
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.77 E-value=2.2e+02 Score=25.40 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=48.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045355 195 KISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMN 253 (900)
Q Consensus 195 la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 253 (900)
--.++..+|+-++--+.+...+...+-++..+..+|.+|.+.|+..+|.+++.++-+..
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34556778888888888888767777779999999999999999999999999998764
No 285
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.66 E-value=67 Score=30.82 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEAIEHTPTV 413 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~ 413 (900)
-.|++|.++...++|.+|.+.+..|+...|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 46777888888888888888888888777643
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.65 E-value=2.5e+02 Score=25.72 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Q 045355 398 VALSKIDEAIEH--TPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLAD 447 (900)
Q Consensus 398 ~Al~~~~~al~~--~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d 447 (900)
.+.++|...... .-..+..|...|.++...|++.+|.++|+.+++..-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 366677766654 34788899999999999999999999999999976443
No 287
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.99 E-value=4.2e+02 Score=28.08 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=54.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcC-----------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 045355 387 AQHYDRRGQYDVALSKIDEAIEHT-----------------PTVIDLYSVKSRILKHAGDLAAAATLADEARCM------ 443 (900)
Q Consensus 387 a~~y~~~g~~~~Al~~~~~al~~~-----------------P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l------ 443 (900)
..+.....+.++|++++++..... -....+....+++|...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345556778888888887653221 012345566788888888888888888888643
Q ss_pred -CcCCh-hHHHHHHHHHHHcCChHHHHHHHHHh
Q 045355 444 -DLADR-YVNSECVKRMLQADQVSLAEKTAALF 474 (900)
Q Consensus 444 -dp~d~-~l~~~~a~~~l~~g~~eeA~~~~~~~ 474 (900)
+|... .+....+.++.+.+++..+....-.+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~ 195 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLY 195 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111 33444566677777777766544333
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.53 E-value=1.8e+02 Score=31.84 Aligned_cols=63 Identities=13% Similarity=-0.051 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCC----------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCC
Q 045355 385 FLAQHYDRRGQYDVALSKIDEAIEHTP----------TVIDLYSVKSRILKHAGDLAAAATLADEARCM-DLAD 447 (900)
Q Consensus 385 ~la~~y~~~g~~~~Al~~~~~al~~~P----------~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-dp~d 447 (900)
.+-.+|++.|+...+...+...-...+ ..+..++.+|+++...+++.+|.+.+..|+.. .|.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 355788999999999888865433222 34568899999999999999999999999998 6755
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.16 E-value=2.4e+02 Score=25.47 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Q 045355 397 DVALSKIDEAIEH--TPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLAD 447 (900)
Q Consensus 397 ~~Al~~~~~al~~--~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d 447 (900)
+.+.++|.-.... .-..+..|...|..+...|++.+|.++|+.+++..-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4477888776654 34778899999999999999999999999999975444
No 290
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=32.18 E-value=1.5e+02 Score=23.64 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++.+|+..-..|+|++|+.+|.++++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344566777777777888888888777665
No 291
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.08 E-value=1e+02 Score=25.43 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045355 13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGE-------TLSMKGLTLNCMDRKSEAYELVRLGVK 71 (900)
Q Consensus 13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~-------~~~~lg~~~~~~g~~~eA~~~~~~al~ 71 (900)
|..+..++..|+|=+|-+.++.+....|. ++ +....|......|+. |..++.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 66788888888888888888888887754 32 222223344456666 7777777765
No 292
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.89 E-value=3e+02 Score=29.30 Aligned_cols=96 Identities=11% Similarity=-0.031 Sum_probs=56.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-------C----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCC
Q 045355 118 SLLQAQMRDLTGFVETRQQLLTLK-------P----------NHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYP 180 (900)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~-------p----------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~l~~~~~ 180 (900)
..+..+..+.+++++.++.+...- + .....+..++..|...|+.++|...++.....+.....
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556677888888777653211 0 11234567788888899999999888887776654321
Q ss_pred CCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355 181 PDNERCEHGEMLLYKISLLEECGSFERALAEMHKK 215 (900)
Q Consensus 181 ~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~a 215 (900)
.+. ..+...+...+..+...+++..+....-..
T Consensus 163 ~~~--~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~ 195 (393)
T 4b4t_O 163 IPL--RITNSFYSTNSQYFKFKNDFNSFYYTSLLY 195 (393)
T ss_dssp SSS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 111 234444555555556666665554444333
No 293
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.62 E-value=1.3e+02 Score=23.40 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045355 227 EQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKC 266 (900)
Q Consensus 227 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 266 (900)
..+|..+...|++++|...|-+++...|.-......+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~t 60 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT 60 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4577888888888888888888888877766555444333
No 294
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.70 E-value=4.7e+02 Score=26.74 Aligned_cols=86 Identities=14% Similarity=-0.029 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 045355 75 KSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAV- 153 (900)
Q Consensus 75 ~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 153 (900)
.++..++.+|..|...|++.+|..+|-.. +.+++..+..+-.-..... -.-.|.....+...+.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~------------~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQV------------DDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHT------------TCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhc------------CCCCcchHHHHHHHHHH
Confidence 46788999999999999999999888411 1112333322222111110 0012223344444443
Q ss_pred HHHHcCCHHHHHHHHHHHHhhh
Q 045355 154 SHHLNSNGSKAVEILEAYEGTL 175 (900)
Q Consensus 154 ~~~~~g~~~~A~~~l~~~~~~l 175 (900)
.|...|+...|..++..|.+.+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 4567799999999988887655
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.99 E-value=1.9e+02 Score=23.04 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 7 SKDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 7 ~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
.+...++.+|+..-..|+|++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445677788888788888888888877765
No 296
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=28.90 E-value=4.1e+02 Score=28.27 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCChhHHH
Q 045355 378 TLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM-----DLADRYVNS 452 (900)
Q Consensus 378 ~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-----dp~d~~l~~ 452 (900)
.++|.+|-+| .+.+|.-|+-.+-..-+..|+....- ++..|.+|+.. .-.+.|-..
T Consensus 262 ~LLWlLyd~G----hL~rYPmALgnLgDLEe~~pt~gr~~---------------~~~L~~~AI~sa~~~Y~n~HvYPYt 322 (550)
T 3u84_A 262 KLLWLLYDLG----HLERYPMALGNLADLEELEPTPGRPD---------------PLTLYHKGIASAKTYYRDEHIYPYM 322 (550)
T ss_dssp HHHHHHHHTT----TTTTCHHHHHHHHHHHHHSCCTTCCC---------------HHHHHHHHHHHHHHHSTTCCSHHHH
T ss_pred HHHHHHHhcc----chhhCchhhcchhhHhhcCCCCCCCC---------------HHHHHHHHHHHHHHHhccCCcccee
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 045355 453 ECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHS 532 (900)
Q Consensus 453 ~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~ 532 (900)
..+-|+.|.+++.+|...+. +.+.+-..-+--.+=.+.|++...+-.+....-+.-..
T Consensus 323 YlgGy~yR~~~~reAl~~WA----------------------~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP~~~k~~a 380 (550)
T 3u84_A 323 YLAGYHCRNRNVREALQAWA----------------------DTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAA 380 (550)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------------HHHHHHTTSCCCGGGHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ecchhhhhcchHHHHHHHHH----------------------HHHHHHHHcCCCcchHHHHHHHHHHHHHhhhHHHHHhh
Q ss_pred H---------------------hhhhccHHHHHHHHHhhhhhc
Q 045355 533 Y---------------------CLRKMTLRAYVEMLKFQDRLH 554 (900)
Q Consensus 533 y---------------------~~rk~~~~~y~~~l~~~d~l~ 554 (900)
- .++- ++.+-.+||+.|.|.
T Consensus 381 ~~~~~G~~~~~~~~~~~~~~~siL~D--p~cfA~LLrFYDgIC 421 (550)
T 3u84_A 381 SLLEAGEERPGEQSQGTQSQGSALQD--PECFAHLLRFYDGIC 421 (550)
T ss_dssp HHHHTC---------------CGGGC--HHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccchhHHHHhcC--hHHHHHHHHHhhcce
No 297
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.82 E-value=51 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++.+|+..-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777777777888888887777664
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.75 E-value=2e+02 Score=26.26 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---HHHHHHH------HHHHHhccCHHHHHHHHHHHHh
Q 045355 47 SMKGLTLNCMDRKSEAYELVRLGVKNDIKS---HVCWHVY------GLLYRSDREYREAIKCYRNALR 105 (900)
Q Consensus 47 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l------g~~~~~~g~~~eAi~~~~~al~ 105 (900)
+..|..++..|+|=+|-+.++.+-...+.. ...|..+ |..+.+.||...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566666677777777777776654332 2222222 2233445555555555555544
No 299
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.68 E-value=1.2e+02 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=17.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 045355 82 VYGLLYRSDREYREAIKCYRNALRIDPDNI 111 (900)
Q Consensus 82 ~lg~~~~~~g~~~eAi~~~~~al~~~p~~~ 111 (900)
.+|..+...|++++|+.+|-+|+...|.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 455555666666666666666666555433
No 300
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=28.59 E-value=12 Score=37.33 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CcCC--h-hHHHHHHHHHHHcCChH
Q 045355 396 YDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM-------DLAD--R-YVNSECVKRMLQADQVS 465 (900)
Q Consensus 396 ~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-------dp~d--~-~l~~~~a~~~l~~g~~e 465 (900)
...|+.++.+|++.+ ..|++++|+.+|..++++ .|+. + .+..++..|+-|+..++
T Consensus 20 ~~~Ai~lv~~AVe~D---------------~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK 84 (257)
T 2ymb_A 20 STAAATVLKRAVELD---------------SESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIK 84 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655554 455666666666555543 3332 2 67777778887776655
Q ss_pred HHH
Q 045355 466 LAE 468 (900)
Q Consensus 466 eA~ 468 (900)
+-+
T Consensus 85 ~~L 87 (257)
T 2ymb_A 85 KYL 87 (257)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.53 E-value=6.2e+02 Score=28.96 Aligned_cols=221 Identities=10% Similarity=-0.100 Sum_probs=0.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH------HHh
Q 045355 51 LTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQ------AQM 124 (900)
Q Consensus 51 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~------~~~ 124 (900)
.++.-.|+|+.|+.++-+. +..--..+|.++...|-... =...+..+++ ....+++.+. +..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~--~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKP--KRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCcccccCCC--cccccHHHHHHHHHHHhhc
Q ss_pred cCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHHhhhccCCCCCcchhchhH
Q 045355 125 RDLTGFVETRQQLLTLKP---NHRMNWIGFAVSHHLNSNGSKAV-----------EILEAYEGTLEDDYPPDNERCEHGE 190 (900)
Q Consensus 125 g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~-----------~~l~~~~~~l~~~~~~~~~~~~~~~ 190 (900)
.|..+|+++|--+ .... .....+..+.......++++.-+ .+++.+...+...... ...-.
T Consensus 370 td~~~Al~Y~~li-~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~----~~~~~ 444 (661)
T 2qx5_A 370 SDPRVAVEYLVLI-TLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEK----EFLHT 444 (661)
T ss_dssp TCHHHHHHHHHGG-GGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHH----HHHHH
T ss_pred CCHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHH----HHHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHhCCC-
Q 045355 191 MLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIG--------------RLEEAAELYRALLSMNPD- 255 (900)
Q Consensus 191 ~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g--------------~~~eA~~~~~~al~~~p~- 255 (900)
+....|.-....|++++|+..|.-+-+.+.--.-+...++.+..... +...-...+.+....+|.
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~ 524 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGI 524 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchh
Q ss_pred -------CHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHH
Q 045355 256 -------NYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSL 291 (900)
Q Consensus 256 -------~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 291 (900)
+......|..+..+... ...|+++.|+..++++
T Consensus 525 ~~~~~~~~~~t~~lLl~l~~f~~~---~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 525 SRQIHVKNKEICMLLLNISSIREL---YFNKQWQETLSQMELL 564 (661)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHhC
No 302
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=27.87 E-value=4.5e+02 Score=28.00 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCChhHHH
Q 045355 378 TLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCM-----DLADRYVNS 452 (900)
Q Consensus 378 ~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~l-----dp~d~~l~~ 452 (900)
.++|.+|-.| .+..|.-|+-.+-..-+..|+... ..+...|++|+.. +-...|-..
T Consensus 247 ~LLWlLyd~G----hl~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYt 307 (489)
T 4gq4_A 247 KLLWLLYDLG----HLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYM 307 (489)
T ss_dssp HHHHHHHHHT----TTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHH
T ss_pred HHHHHHHhcc----chhhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCccccee
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccCCcCCChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 045355 453 ECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHS 532 (900)
Q Consensus 453 ~~a~~~l~~g~~eeA~~~~~~~~~~~~~~~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~ 532 (900)
+.+-++.|.+++.+|...++ +.+.+..+-+--.+=.+.|+++..+-++...+-+.-..
T Consensus 308 YlgG~~~R~~~~~eAl~~wa----------------------~aa~Vi~~YnY~reDeEiYke~~eIanelip~~lk~~~ 365 (489)
T 4gq4_A 308 YLAGYHCRNRNVREALQAWA----------------------DTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAA 365 (489)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------------HHHHHHTTSCCCTTCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ecchHHHHhhhHHHHHHHhh----------------------hhhhhhhhcccccchHHHHHHHHHHHHHhhhHHHHHhh
Q ss_pred Hhhhhcc-------HHHHHHHHHhhhhh
Q 045355 533 YCLRKMT-------LRAYVEMLKFQDRL 553 (900)
Q Consensus 533 y~~rk~~-------~~~y~~~l~~~d~l 553 (900)
-...... ++.+..+|++-|.+
T Consensus 366 ~~~~~~~~~~~l~dp~c~a~lL~fyDgi 393 (489)
T 4gq4_A 366 SLLEAGSQGSALQDPECFAHLLRFYDGI 393 (489)
T ss_dssp HHHHTTCSSCGGGCHHHHHHHHHHHHHH
T ss_pred hcccccccccCCCCcchhhhhccccCCc
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.33 E-value=3.5e+02 Score=26.21 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHc
Q 045355 350 LEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTP--TVIDLYSVKSRILKHA 427 (900)
Q Consensus 350 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P--~~~~~~~~la~i~~~~ 427 (900)
+..+++.....+...+.+.. ...++-+|...+.. .+.+.++|.-.....- ..+.+|...|.++...
T Consensus 96 L~~lLErc~~~F~~~~rYkn------D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKD------DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTT------CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccC------CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhcCcCCh-hHHHHHHHHHHH
Q 045355 428 GDLAAAATLADEARCMDLADR-YVNSECVKRMLQ 460 (900)
Q Consensus 428 G~~~eA~~~~~~al~ldp~d~-~l~~~~a~~~l~ 460 (900)
|++.+|.++|+.+++..-... .+......+..|
T Consensus 164 g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp TCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
No 304
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=26.43 E-value=1.2e+02 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 9 DANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 9 ~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
...++..|..+|+.++|.+|+.+|+++..
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 34455566666666666666666666553
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.37 E-value=1e+02 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 045355 79 CWHVYGLLYRSDREYREAIKCYRNALRIDPDN 110 (900)
Q Consensus 79 ~~~~lg~~~~~~g~~~eAi~~~~~al~~~p~~ 110 (900)
..+.+|.++...++|.+|...+..|++..|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 45667777777777777777777777776654
No 306
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.05 E-value=61 Score=27.80 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045355 394 GQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARC 442 (900)
Q Consensus 394 g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ 442 (900)
..+++|..++.++|..+ ..|+.+.|+++|.+.+.
T Consensus 17 ~~h~~AF~~Is~AL~~D---------------E~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTD---------------ELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 34677888888887766 23666666666665543
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.98 E-value=75 Score=36.81 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMD 57 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g 57 (900)
.++..|...+..|+|.-|.++++.++..+|++.++...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666665554443
No 308
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.67 E-value=98 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355 223 LAYKEQEVSLLVKIGRLEEAAELYRALL 250 (900)
Q Consensus 223 ~~~~~~la~~~~~~g~~~eA~~~~~~al 250 (900)
+..+..++..+.+.|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455667777778888888877766654
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.05 E-value=69 Score=27.67 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 045355 8 KDANLFKLIVKSYETKQYKKGLKAADAILK 37 (900)
Q Consensus 8 ~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~ 37 (900)
+...++.+|+..-..|+|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444566677666667777777777776654
No 310
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=24.72 E-value=0.17 Score=55.29 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 045355 11 NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSD 90 (900)
Q Consensus 11 ~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 90 (900)
.+-.-|..+|+.|.|+.|.-+|..+ ++ |..++.++..+|++..|.+..++| ++..+|-.........
T Consensus 146 ~iq~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 146 HIQQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 212 (624)
T ss_dssp CTHHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHS
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCc
Confidence 3456678888888888877666553 22 456778888889988888877654 4556788888888888
Q ss_pred cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045355 91 REYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEA 170 (900)
Q Consensus 91 g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 170 (900)
+.+.-|--|--..+- .|+. +-.+...|...|-|++-+..++..+.+..-+......+|.+|.+- +.++-.+.++.
T Consensus 213 ~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp CTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred hHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 888888777655553 2322 334556678889999999999999998888889999999888765 44555544444
Q ss_pred HHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHH
Q 045355 171 YEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALA 210 (900)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~ 210 (900)
|...+ +.+.-...-+....|-.+.-+|..-.+++.|..
T Consensus 288 f~sri--NipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 288 FWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSSSS--CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhc--cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 33222 111111112344566667777777777776643
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.90 E-value=1.7e+02 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 045355 382 TLFFLAQHYDRRGQYDVALSKIDEA 406 (900)
Q Consensus 382 a~~~la~~y~~~g~~~~Al~~~~~a 406 (900)
.+-..|..+...|.|++|+++.+++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445666666677777776666544
No 312
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.46 E-value=6e+02 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHH
Q 045355 240 EEAAELYRALLS-----MNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSL 291 (900)
Q Consensus 240 ~eA~~~~~~al~-----~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 291 (900)
+.|...|+.+++ +.|.+|..+ +|+.-+.+.- +--.++.++|..+-+++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirL-GLaLNfSVFy---YEiln~~~~Ac~lAk~A 204 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRL-GLALNFSVFY---YEILNSPDRACNLAKQA 204 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHH-HHHHHHHHHH---HHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHH---HHHccCHHHHHHHHHHH
Confidence 567788888875 457776432 2222211000 01256778887776655
No 313
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.56 E-value=7.6e+02 Score=30.90 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 045355 385 FLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLA 431 (900)
Q Consensus 385 ~la~~y~~~g~~~~Al~~~~~al~~~P~~~~~~~~la~i~~~~G~~~ 431 (900)
+...+....|+|-.|++++.+.++..| ..+.+-.++.++..+|--.
T Consensus 1289 ~~~~~~~~~~~~g~~~k~l~k~~~~k~-~~~~~~~~~~~~~~l~w~h 1334 (1354)
T 3lxu_X 1289 FALWHAYAHGHYGRMYKYVVKLIEEKR-TRDHFVELAAINGALGHEH 1334 (1354)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCHH
Confidence 344555579999999999999999887 4467788888888877433
Done!