BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045356
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 287 bits (735), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 157/392 (40%), Positives = 232/392 (59%), Gaps = 39/392 (9%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+PF+V DLG ++ + LP V P+YAVKCN + +L TLAALG+ FDCAS +EIQ
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V + V P++IIYAN CK +SHI+YA GV++ TFD + EL+K+ K HPK ++++RI S
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-S 156
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D AR L KFGA E+ +L A+ + V GV+FH+GS +T+ F AI++++
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ LG M +LDIGGGF PG F E A +I +A++ +FP + L
Sbjct: 217 FVFDMGTELGFN-MHILDIGGGF---PGTRDAPLKFEEIAGVINNALEKHFPPDL---KL 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRVRDELRE--------------YWINDGKYGSFGWL 329
++++EPGR+ +AFTLA VI K+V ++ Y++NDG YGSF +
Sbjct: 270 TIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ + + + N + Y S+V+GPTC +D++ + LPE++V +WL+F DM
Sbjct: 330 LYDHAVVR---PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDM 386
Query: 390 GAYTTACGTNFNGFNTAAI-------PTYVVR 414
GAYT ++FNGF + I P +VVR
Sbjct: 387 GAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 287 bits (735), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 232/392 (59%), Gaps = 39/392 (9%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+PF+V DLG ++ + LP V P+YAVKCN + +L TLAALG+ FDCAS +EIQ
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V + V P++IIYAN CK +SHI+YA GV++ TFD + EL+K+ K HPK ++++RI +
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D AR L KFGA E+ +L A+ + V GV+FH+GS +T+ F AI++++
Sbjct: 158 D-DSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ LG M +LDIGGGF PG F E A +I +A++ +FP + L
Sbjct: 217 FVFDMGTELGFN-MHILDIGGGF---PGTRDAPLKFEEIAGVINNALEKHFPPDL---KL 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRVRDELRE--------------YWINDGKYGSFGWL 329
++++EPGR+ +AFTLA VI K+V ++ Y++NDG YGSF +
Sbjct: 270 TIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ + + + N + Y S+V+GPTC +D++ + LPE++V +WL+F DM
Sbjct: 330 LYDHAVVR---PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDM 386
Query: 390 GAYTTACGTNFNGFNTAAI-------PTYVVR 414
GAYT ++FNGF + I P +VVR
Sbjct: 387 GAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 227/388 (58%), Gaps = 34/388 (8%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+ FYV DLG ++ + + + LP V P+YAVKCN AI+ TLAA+G+ FDCAS +EIQ
Sbjct: 38 DAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQL 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V L V +R+IYAN CK VS IKYAAS GV + TFDS EL K+ + HPK +L++RI +
Sbjct: 98 VQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT 157
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D A L KFGA + LL A+ + VIGV+FH+GS T+ D F A+++A+
Sbjct: 158 D-DSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDAR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ A +G + M +LDIGGGF PG F E S+I A+ YFP+++ +
Sbjct: 217 CVFDMATEVGFS-MHLLDIGGGF---PGSEDTKLKFEEITSVINPALDKYFPSDSG---V 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRV----------RDELRE----YWINDGKYGSFGWL 329
+I+EPGR+ +AFTLA +I K+ DE E Y++NDG YGSF +
Sbjct: 270 RIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ K +L + + Y S+++GPTC +D++ LPE+ V DW++F +M
Sbjct: 330 LYDHAHVKA---LLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENM 386
Query: 390 GAYTTACGTNFNGFNTAAIPTYVVRSDP 417
GAYT A + FNGF I Y V S P
Sbjct: 387 GAYTVAAASTFNGFQRPNI--YYVMSRP 412
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 231/392 (58%), Gaps = 39/392 (9%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+PF+V DLG ++ + LP V P+YAVKCN + +L TLAALG+ FDCAS +EIQ
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V + V P++IIYAN CK +SHI+YA GV++ TFD + EL+K+ K HPK ++++RI +
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D AR L KFGA E+ +L A+ + V GV+FH+GS +T+ F AI++++
Sbjct: 158 D-DSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ LG M +LDIGGGF PG F E A +I +A++ +FP + L
Sbjct: 217 FVFDMGTELGFN-MHILDIGGGF---PGTRDAPLKFEEIAGVINNALEKHFPPDL---KL 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRVRDELRE--------------YWINDGKYGSFGWL 329
++++EPGR+ +AFTLA VI K V ++ Y++NDG YGSF +
Sbjct: 270 TIVAEPGRYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ + + + N + Y S+V+GPTC +D++ + LPE++V +WL+F DM
Sbjct: 330 LYDHAVVR---PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDM 386
Query: 390 GAYTTACGTNFNGFNTAAI-------PTYVVR 414
GAYT ++FNGF + I P +VVR
Sbjct: 387 GAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 155/392 (39%), Positives = 231/392 (58%), Gaps = 39/392 (9%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+PF+V DLG ++ + LP V P+YAV CN + +L TLAALG+ FDCAS +EIQ
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVACNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V + V P++IIYAN CK +SHI+YA GV++ TFD + EL+K+ K HPK ++++RI +
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D AR L KFGA E+ +L A+ + V GV+FH+GS +T+ F AI++++
Sbjct: 158 D-DSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ LG M +LDIGGGF PG F E A +I +A++ +FP + L
Sbjct: 217 FVFDMGTELGFN-MHILDIGGGF---PGTRDAPLKFEEIAGVINNALEKHFPPDL---KL 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRVRDELRE--------------YWINDGKYGSFGWL 329
++++EPGR+ +AFTLA VI K+V ++ Y++NDG YGSF +
Sbjct: 270 TIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ + + + N + Y S+V+GPTC +D++ + LPE++V +WL+F DM
Sbjct: 330 LYDHAVVR---PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDM 386
Query: 390 GAYTTACGTNFNGFNTAAI-------PTYVVR 414
GAYT ++FNGF + I P +VVR
Sbjct: 387 GAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 34/388 (8%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+ FYV DLG ++ + + + LP V P+YAVKCN AI++TLAA G+ FDCAS +EIQ
Sbjct: 38 DAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQL 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V +L V P+RIIYAN CK VS IKYAA+ GV + TFDS EL K+ + HPK +L++RI +
Sbjct: 98 VQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT 157
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D A L KFGA LL A+ + V+GV+FH+GS T+ + F AI++A+
Sbjct: 158 D-DSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDAR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ A +G + M +LDIGGGF PG F E +I A+ YFP+++ +
Sbjct: 217 CVFDMGAEVGFS-MYLLDIGGGF---PGSEDVKLKFEEITGVINPALDKYFPSDSG---V 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRV----------RDELRE----YWINDGKYGSFGWL 329
+I+EPGR+ +AFTLA +I K++ DE E Y++NDG YGSF +
Sbjct: 270 RIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ K +L + + Y S+++GPTC +D++ LPE+ V DW++F +M
Sbjct: 330 LYDHAHVK---PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 386
Query: 390 GAYTTACGTNFNGFNTAAIPTYVVRSDP 417
GAYT A + FNGF I Y V S P
Sbjct: 387 GAYTVAAASTFNGFQRPTI--YYVMSGP 412
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 34/388 (8%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+ FYV DLG ++ + + + LP V P+YAVKCN AI++TLAA G+ FDCAS +EIQ
Sbjct: 48 DAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQL 107
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V +L V P+RIIYAN CK VS IKYAA+ GV + TFDS EL K+ + HPK +L++RI +
Sbjct: 108 VQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT 167
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D A L KFGA LL A+ + V+GV+FH+GS T+ + F AI++A+
Sbjct: 168 D-DSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDAR 226
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ A +G + M +LDIGGGF PG F E +I A+ YFP+++ +
Sbjct: 227 CVFDMGAEVGFS-MYLLDIGGGF---PGSEDVKLKFEEITGVINPALDKYFPSDSG---V 279
Query: 284 SVISEPGRFLADTAFTLATKVIGKRV----------RDELRE----YWINDGKYGSFGWL 329
+I+EPGR+ +AFTLA +I K++ DE E Y++NDG YGSF +
Sbjct: 280 RIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCI 339
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ K +L + + Y S+++GPTC +D++ LPE+ V DW++F +M
Sbjct: 340 LYDHAHVK---PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 396
Query: 390 GAYTTACGTNFNGFNTAAIPTYVVRSDP 417
GAYT A + FNGF I Y V S P
Sbjct: 397 GAYTVAAASTFNGFQRPTI--YYVMSGP 422
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 227/388 (58%), Gaps = 34/388 (8%)
Query: 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
+ FYV DLG ++ + + + LP V P+YAV CN AI++TLAA G+ FDCAS +EIQ
Sbjct: 32 DAFYVADLGDILKKHLRWLKALPRVTPFYAVXCNDSKAIVKTLAATGTGFDCASKTEIQL 91
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
V +L V P+RIIYAN CK VS IKYAA+ GV + TFDS EL K+ + HPK +L++RI +
Sbjct: 92 VQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT 151
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
D A L KFGA LL A+ + V+GV+FH+GS T+ + F AI++A+
Sbjct: 152 D-DSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDAR 210
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
VF+ A +G + M +LDIGGGF PG F E +I A+ YFP+++ +
Sbjct: 211 CVFDMGAEVGFS-MYLLDIGGGF---PGSEDVKLKFEEITGVINPALDKYFPSDSG---V 263
Query: 284 SVISEPGRFLADTAFTLATKVIGKRV----------RDELRE----YWINDGKYGSFGWL 329
+I+EPGR+ +AFTLA +I K++ DE E Y++NDG YGSF +
Sbjct: 264 RIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCI 323
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
+ K +L + R Y S+++GPTC +D++ LPE+ V DW++F +M
Sbjct: 324 LYDHAHVK---PLLQKRPKPDERYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 380
Query: 390 GAYTTACGTNFNGFNTAAIPTYVVRSDP 417
GAYT A + FNGF I Y V S P
Sbjct: 381 GAYTVAAASTFNGFQRPTI--YYVMSGP 406
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 205/355 (57%), Gaps = 13/355 (3%)
Query: 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVL 112
FYV +V L Q P V P+YAVKCN + +L+T+ NFDCAS SEI+ V+
Sbjct: 19 FYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVI 78
Query: 113 ALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPV 172
+ VSP RII+A+ K + + +A GV++ TFDS ELDKI +HP C++++RI+
Sbjct: 79 QIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCD- 137
Query: 173 DGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTV 232
D A L +KFGAN +E+ HLL A+ + VIG++FH+GS + N +A++ AI +K
Sbjct: 138 DPNATVQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEA 197
Query: 233 FETAARLGMTKMRVLDIGGGFACNPGFHEAAS----IIKDAIQTYFPNETAAGHLSVISE 288
F A +G K +LDIGGG + E ++ I DAI+ +FP +T +++++E
Sbjct: 198 FNEAISVGH-KPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDT----VTIVAE 252
Query: 289 PGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASH 348
PGRF A+ LAT+VIGKRVRD L EY+ N+ YG F + E+ + L
Sbjct: 253 PGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQ---LLRDVP 309
Query: 349 SNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGF 403
+ S ++G TC VD + LPEL + DW+ F GAYT T+FNGF
Sbjct: 310 DDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGF 364
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 205/355 (57%), Gaps = 13/355 (3%)
Query: 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVL 112
FYV +V L Q P V P+YAVKCN + +L+T+ NFDCAS SEI+ V+
Sbjct: 19 FYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVI 78
Query: 113 ALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPV 172
+ VSP RII+A+ K + + +A GV++ TFDS ELDKI +HP C++++RI+
Sbjct: 79 QIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCD- 137
Query: 173 DGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTV 232
D A L +KFGAN +E+ HLL A+ + VIG++FH+GS + N +A++ AI +K
Sbjct: 138 DPNAAVQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEA 197
Query: 233 FETAARLGMTKMRVLDIGGGFACNPGFHEAAS----IIKDAIQTYFPNETAAGHLSVISE 288
F A +G K +LDIGGG + E ++ I DAI+ +FP +T +++++E
Sbjct: 198 FNEAISVGH-KPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDT----VTIVAE 252
Query: 289 PGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASH 348
PGRF A+ LAT+VIGKRVRD L EY+ N+ YG F + E+ + L
Sbjct: 253 PGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQ---LLRDVP 309
Query: 349 SNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGF 403
+ S ++G TC VD + LPEL + DW+ F GAYT T+FNGF
Sbjct: 310 DDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGF 364
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 241 bits (614), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 211/378 (55%), Gaps = 24/378 (6%)
Query: 37 EFMESIILKRQELDEP--FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLA 94
EF ++I + + ++P F++ D V + N+P V P +AVKCNPEP +++ L
Sbjct: 10 EFALNLISQFEPENQPLGFWIFDTEGVEKAVERWKKNMPTVRPCFAVKCNPEPHLVKLLG 69
Query: 95 ALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDK 154
LG FDCAS +EI+ VL L +P+ I Y+ KP + + A+ +G+N T DSI E+ K
Sbjct: 70 ELGCGFDCASLNEIKEVLDLGFNPEDITYSQTFKPYNQLIEASHLGINHTIVDSIDEVQK 129
Query: 155 IRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGS 214
I K+ PK ++IRI D A + KFG + +EV +L + GL + GV FH+GS
Sbjct: 130 IAKYAPKMGIMIRIMEN-DTSAGHVFGEKFGLHDDEVEIVLKEIKDKGLNLDGVHFHVGS 188
Query: 215 EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTY- 273
++ N + F A+ +A+ A + GM K ++DIGGGF+ F E A+ I+ I+
Sbjct: 189 DSHNSEVFTKALTKARNTVTLAEQFGM-KPYLIDIGGGFSQVAPFEEFAATIEKTIKELE 247
Query: 274 FPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVR----DELREYWINDGKYGSFG-- 327
FP T I+EPGR++A AF L + + GKRVR + EY DG +GSFG
Sbjct: 248 FPERT-----RFIAEPGRYMASNAFHLVSSLHGKRVRIQNGKKQIEYTSGDGLHGSFGCC 302
Query: 328 -WLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEV-SDWLV 385
W ++ + + N + Y S ++GP+C DKV T +LPE+E DWL+
Sbjct: 303 IWFEKQK-----SCECITQKVNENTKMYESIIYGPSCNGSDKVAT-QELPEMEPGKDWLL 356
Query: 386 FSDMGAYTTACGTNFNGF 403
F +MGAYT + TNFNGF
Sbjct: 357 FPNMGAYTISMATNFNGF 374
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 203/380 (53%), Gaps = 24/380 (6%)
Query: 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVL 112
F+V DLG ++ + Q + + + P+Y VKCN PA+LE LAALG+ F C+S +E+ V
Sbjct: 40 FFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQ 99
Query: 113 ALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPV 172
L VSP+ II+ + CK VS IKYAA VGVN+ T D+ EL KI + HP ++L+ I +
Sbjct: 100 ELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATED 159
Query: 173 DGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTV 232
+ G + KFG + HLL A+ + +IGV FH+ S + A+++A+ V
Sbjct: 160 NIGGE-DGNMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDARCV 218
Query: 233 FETAARLGMTKMRVLDIGGGF-ACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGR 291
F+ A G T M +LDIGGGF E +I + YFP + + +ISEPG
Sbjct: 219 FDMAGEFGFT-MNMLDIGGGFTGTEIQLEEVNHVISPLLDIYFPEGSG---IQIISEPGS 274
Query: 292 FLADTAFTLATKVIGKRV--RDELRE-------------YWINDGKYGSFGWLSSEEVIA 336
+ +AFTLA +I K+V D+ Y++NDG YGSF SE++
Sbjct: 275 YYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNT 334
Query: 337 KCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTAC 396
H + + S+++GP+C +D++ LPEL V DWL+F +MGA +
Sbjct: 335 IPEVH---KKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHE 391
Query: 397 GTNFNGFNTAAIPTYVVRSD 416
+ FN F AI + SD
Sbjct: 392 PSAFNDFQRPAIYFMMSFSD 411
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 189/385 (49%), Gaps = 35/385 (9%)
Query: 47 QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPS 106
++ P +LD V+ Y L + LP V +YA+K P P ++ TL A G++FD A+
Sbjct: 51 EQFGAPLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTG 110
Query: 107 EIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLI 166
E++ V + V D I+ + K + I+ A + G N+ D++ EL+K + + ELL+
Sbjct: 111 EVELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLV 170
Query: 167 RIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAI 226
R+ S + A L KFG +PE+ ++ A+ + + G++FH+GS+ TN + + AI
Sbjct: 171 RL-SFRNSEAFADLSKKFGCSPEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAI 229
Query: 227 AEAKTVFETAARLGMTKMRVLDIGGGFACN------------PGFHEAASIIKDAIQTYF 274
+ V E G+ + LDIGGGF N +EA S++ + +
Sbjct: 230 HTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETVH--- 286
Query: 275 PNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEV 334
V++EPGRF+ A T V+G+ R+ Y+++DG YGSF L ++
Sbjct: 287 ----------VLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDD- 335
Query: 335 IAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTT 394
A + S + GPTC +VD + LP+L D ++ MGAYT+
Sbjct: 336 -----ARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTS 390
Query: 395 ACGTNFNGF---NTAAIPTYVVRSD 416
A T+FN F T A+ +V S+
Sbjct: 391 ATATDFNFFKRAQTIALNEFVASSE 415
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 24/336 (7%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138
YA+K N +IL LA L S DC S EIQ L + P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 139 VGVNLTTFDSIQELDKI----RKWHPKCELLIRIKSPVDGGARYPL-----DSKFGANPE 189
+ + +S EL I + K + IRI +D L ++KFG +
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYLSTGLKENKFGVGEK 182
Query: 190 EVAHL-LGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLD 248
E + L A +++ L + V FHIGS+ +L+ A + + ++ LG+ +R D
Sbjct: 183 EALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGID-LRFFD 241
Query: 249 IGGGFACNPGFHEAASIIK--DAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIG 306
+GGG + +E IK D Q N L++I EPGR + + L T+V+
Sbjct: 242 VGGGIGVS---YENEETIKLYDYAQGIL-NALQGLDLTIICEPGRSIVAESGELITQVLY 297
Query: 307 KRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYR-STVFGPTCAA 365
++ + + + + I D F L AK H + + S R V GP C +
Sbjct: 298 EK-KAQNKRFVIVDAGMNDF--LRPSLYHAK---HAIRVITPSKGREISPCDVVGPVCES 351
Query: 366 VDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
D LPELE D + +GAY ++ + +N
Sbjct: 352 SDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 149/337 (44%), Gaps = 26/337 (7%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138
YA+K N +IL LA L S DC S EIQ L + P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 139 VGVNLTTFDSIQELDKI----RKWHPKCELLIRIKSPVDGGARYPL------DSKFGANP 188
+ + +S EL I + K + IRI +D +P ++KFG
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKT-HPYISTGLKENKFGVGE 181
Query: 189 EEVAHL-LGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVL 247
+E + L A +++ L + V FHIGS+ +L+ A + + ++ LG+ +R
Sbjct: 182 KEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGID-LRFF 240
Query: 248 DIGGGFACNPGFHEAASIIK--DAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVI 305
D+GGG + +E IK D Q N L++I EPGR + + L T+V+
Sbjct: 241 DVGGGIGVS---YENEETIKLYDYAQGIL-NALQGLDLTIICEPGRSIVAESGELITQVL 296
Query: 306 GKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYR-STVFGPTCA 364
++ + + + + I D F L AK H + + S R V GP C
Sbjct: 297 YEK-KAQNKRFVIVDAGMNDF--LRPSLYHAK---HAIRVITPSKGREISPCDVVGPVCE 350
Query: 365 AVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
+ D LPELE D + +GAY ++ + +N
Sbjct: 351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 160/387 (41%), Gaps = 30/387 (7%)
Query: 31 KDGGLLEFMESIILKR--QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPA 88
+DG L F+E + LK Q P YV + + P YAVK N P
Sbjct: 14 RDGEL--FIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPH 71
Query: 89 ILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS 148
+++ L LG+ D S E+ + P+RI+YA K + A + + +S
Sbjct: 72 LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVES 131
Query: 149 IQELDKIR----KWHPKCELLIRIKSPVDGGARYPL------DSKFGANPEEVAHLLG-A 197
QELD + K K + IR+ VD +P SKFG + E A
Sbjct: 132 RQELDVLNEIAGKLGKKARIAIRVNPDVDPKT-HPYIATGMQKSKFGVDIREAQKEYEYA 190
Query: 198 AQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC-- 255
++ L ++G+ HIGS+ ++ + A+ + +++E+ + G ++ LDIGGG
Sbjct: 191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFD-IKYLDIGGGLGIKY 249
Query: 256 NPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDE-LR 314
P E A + A +I EPGR + A L T+V + ++D+ +
Sbjct: 250 KPEDKEPAPQDLADLLKDLLENVKA---KIILEPGRSIMGNAGILITQV--QFLKDKGSK 304
Query: 315 EYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQ 374
+ I D S I HI+ + + + + GP C D + +
Sbjct: 305 HFIIVDAGMNDLIRPS----IYNAYHHIIPVETKERKKVV-ADIVGPICETGDFLALDRE 359
Query: 375 LPELEVSDWLVFSDMGAYTTACGTNFN 401
+ E++ ++L GAY A +++N
Sbjct: 360 IEEVQRGEYLAVLSAGAYGFAMSSHYN 386
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 139/342 (40%), Gaps = 37/342 (10%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138
YAVK N +L TLA LGS FD S E++ VLA P +++++ K + +K A
Sbjct: 82 YAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQ 141
Query: 139 VGVNLTTFDSIQELDKIRK----WHPKCELLIRIKSPVDG--------GARYPLDSKFGA 186
+ + +S EL ++ K K + +RI VD G R D+KFG
Sbjct: 142 LKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLR---DNKFGI 198
Query: 187 NPEEVAHLLGAAQA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMR 245
+ A + A + L V G+ HIGS+ T L F A + ++ G+ +R
Sbjct: 199 TFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGI-HIR 257
Query: 246 VLDIGGGFAC------NPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFT 299
LD+GGG P E A + D ++ + L +I EPGR +A A
Sbjct: 258 HLDVGGGLGVVYRDELPPQPSEYAKALLDRLERH-------RDLELIFEPGRAIAANAGV 310
Query: 300 LATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVF 359
L TKV + E + + I D L + I +TY +
Sbjct: 311 LVTKVEFLK-HTEHKNFAIIDAAMND---LIRPALYQAWQDIIPLRPRQGEAQTY--DLV 364
Query: 360 GPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
GP C D + L L+ D L GAY +N+N
Sbjct: 365 GPVCETSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYN 405
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate
Decarboxylate (Lysa)
Length = 386
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 39/338 (11%)
Query: 77 PYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYA 136
P +AVK N P +L+ L G D + E+ A V +++ K ++
Sbjct: 41 PTFAVKANNNPVLLKILREEGFGXDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQXEHF 100
Query: 137 ASVGVNLTTFDSIQELDKIRKWHPK-CELLIRIKSPVDGGARYPLDS-----KFGANPEE 190
V + DS +E + R+ +P+ E IR+ VD + + KFG E+
Sbjct: 101 LREDVRIVNVDSFEEXEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED 160
Query: 191 VAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIG 250
+ ++ + G+ HIGS+ T ++ F A ++ V + R G + ++IG
Sbjct: 161 LDSFXERFRSXNIR--GLHVHIGSQITRVEPFVEAFSK---VVRASERYGFEE---INIG 212
Query: 251 GGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFL-ADTAFTLATKVIGKRV 309
GG+ N E + + P+ VI E GR++ A + + L V+ KR
Sbjct: 213 GGWGINYSGEELD--LSSYREKVVPD--LKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRR 268
Query: 310 RDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASH------SNNRTYRSTVFGPTC 363
+ + + + DG V+ + L SA H + R+ V GP C
Sbjct: 269 HN--KAFVVVDG---------GXNVLIRPA---LYSAYHRIFVLGKQGKEXRADVVGPLC 314
Query: 364 AAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
+ D + +LPE+E D + + GAY N+N
Sbjct: 315 ESGDVIAYDRELPEVEPGDIIAVENAGAYGYTXSNNYN 352
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 29/368 (7%)
Query: 52 PFYVLDLGVV---ISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEI 108
PFYV + ++H +++ + YA+ N A+L LA LG+ D S EI
Sbjct: 50 PFYVYSRATIERHFRVFHDAFADMDTL-VTYALXANSNQAVLTALAKLGAGADTVSQGEI 108
Query: 109 QAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIR-------KWHPK 161
+ LA + +RI+++ K + +A G+ +S EL+ + K P
Sbjct: 109 RRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAP- 167
Query: 162 CELLIRIKSPVDGGARYPL-----DSKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGS 214
+ +RI VD + ++KFG P + A A AS GL V+G+ HIGS
Sbjct: 168 --VSLRINPDVDAKTHAKISTGKSENKFGI-PRDKARAAYARAASLPGLNVVGIDMHIGS 224
Query: 215 EATNLDAFHAAIA-EAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTY 273
+ +L+ F A A A+ V E A +R +D+GGG A
Sbjct: 225 QIIDLEPFDNAFALMAELVKELQA--DGHNIRHVDVGGGLGIPYRTPNTPPPPPVAYAQI 282
Query: 274 FPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEE 333
L + EPGR + A L T+VI + D + + I D + +
Sbjct: 283 VAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDA-KNFVIVDAAMNDLIRPTLYD 341
Query: 334 VIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYT 393
I+ + N R+ GP C D + ++ + D + GAY
Sbjct: 342 AFHDIRPVIM---PNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYG 398
Query: 394 TACGTNFN 401
+ +N
Sbjct: 399 AVLSSTYN 406
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 132/342 (38%), Gaps = 30/342 (8%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138
YA K N AI LA LG D S E+ +V +I++ CK I
Sbjct: 66 YAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 139 VGVNLTTFDSIQEL----DKIRKWHPKCELLIRIKSPVDGGARYPLDS-----KFGANPE 189
+ DSI EL + ++ + RI V+ + + KFG + E
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVE 185
Query: 190 E---VAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRV 246
+ + A + + V+GV HIGS+ T++ F I E + V + L + +
Sbjct: 186 SGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPF---IEETRKVMDFVVELKEEGIEI 242
Query: 247 LDIGGGFACNPGFHEAASI-----IKDA-IQTYFPNETAAGHLSVISEPGRFLADTAFTL 300
D+ G +++ I + DA I T + ++I EPGR L TA L
Sbjct: 243 EDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYL 302
Query: 301 ATKVIGKRVRDELREYWIN-DGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVF 359
KV +++ W+ D + E H + + N + S +
Sbjct: 303 LGKV--HHIKETPVTKWVMIDAGMNDMMRPAMYE-----AYHHIINCKVKNEKEVVS-IA 354
Query: 360 GPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
G C + D +L ++EV D L D+GAY + N+N
Sbjct: 355 GGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYN 396
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 131/342 (38%), Gaps = 30/342 (8%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138
YA N AI LA LG D S E+ +V +I++ CK I
Sbjct: 66 YAYXANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 139 VGVNLTTFDSIQEL----DKIRKWHPKCELLIRIKSPVDGGARYPLDS-----KFGANPE 189
+ DSI EL + ++ + RI V+ + + KFG + E
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVE 185
Query: 190 E---VAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRV 246
+ + A + + V+GV HIGS+ T++ F I E + V + L + +
Sbjct: 186 SGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPF---IEETRKVMDFVVELKEEGIEI 242
Query: 247 LDIGGGFACNPGFHEAASI-----IKDA-IQTYFPNETAAGHLSVISEPGRFLADTAFTL 300
D+ G +++ I + DA I T + ++I EPGR L TA L
Sbjct: 243 EDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYL 302
Query: 301 ATKVIGKRVRDELREYWIN-DGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVF 359
KV +++ W+ D + E H + + N + S +
Sbjct: 303 LGKV--HHIKETPVTKWVMIDAGMNDMMRPAMYE-----AYHHIINCKVKNEKEVVS-IA 354
Query: 360 GPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFN 401
G C + D +L ++EV D L D+GAY + N+N
Sbjct: 355 GGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYN 396
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
Butirosin Biosynthesis
Length = 428
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 147/375 (39%), Gaps = 41/375 (10%)
Query: 47 QELDEPFYVLDLGVVISLYHQLISNL-PMVHPYYAVKCNPEPAILETLAALGSNFDCASP 105
+ + PFY+ D + + Y QL S P + Y ++K N + + G + AS
Sbjct: 13 KRFETPFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASA 72
Query: 106 SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKI----RKWHPK 161
E+ S + II++ K S ++ A G+ +S++EL I K +
Sbjct: 73 GELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKT 132
Query: 162 CELLIRIKSPVDGGARY----PLDSKFGANPEEVAHLLGAAQASGLA-VIGVAFHIGSEA 216
+ IRI G+ + +FG + + ++ A ++ IG+ + G++
Sbjct: 133 ARVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIGIHVYTGTQN 192
Query: 217 TNLD----AFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAA--------- 263
N D + + + ++E R G+ +++GGGF HE A
Sbjct: 193 LNTDSIIESMKYTVDLGRNIYE---RYGIV-CECINLGGGFGVPYFSHEKALDIGKITRT 248
Query: 264 --SIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRV-RDELREYWIND 320
+++A T FP T I E GR+L A T+V+ ++ + E+ + I D
Sbjct: 249 VSDYVQEARDTRFPQTT------FIIESGRYLLAQAAVYVTEVLYRKASKGEV--FVIVD 300
Query: 321 G--KYGSFGWLSSEEVIAKCGAHILASASHSNNRTY-RSTVFGPTCAAVDKVFTGHQLPE 377
G + + + + + S R + T+ GP C D + +P
Sbjct: 301 GGMHHHAASTFRGRSMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPA 360
Query: 378 LEVSDWLVFSDMGAY 392
L D + + GAY
Sbjct: 361 LYPGDLVCVLNSGAY 375
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 58/359 (16%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLAL----SVSPDRIIYANACKPVSHIK 134
+A K IL + G D S EI+ LA PD I++ + ++
Sbjct: 51 FAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLE 110
Query: 135 YAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLD-----SKFGANPE 189
+ + + + S+ LD++ + P + +R+ G + SK G
Sbjct: 111 RVSELQIPVNA-GSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYT 169
Query: 190 EVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDI 249
++ L Q L ++G+ HIGS A + V E L + +
Sbjct: 170 DLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDL-----QAISA 224
Query: 250 GGGFACNPGFHEAASIIKDAIQTYF-----PNETAAGHL----SVISEPGRFLADTAFTL 300
GGG + + + + + Y+ E A HL + EPGRFL + L
Sbjct: 225 GGGLSVP--YQQGEEAVD--TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVL 280
Query: 301 ATKVIGKRVRDELREYWI------ND----GKYGSFGWLSSEEVIAKCGAHILASASHSN 350
T+V + V+ +++ ND YGS+ +S+ +A G S H+
Sbjct: 281 ITQV--RSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISA---LAADGR----SLEHAP 331
Query: 351 NRTYRSTVFGPTCAAVDKVFTGHQ--------LPELEVSDWLVFSDMGAYTTACGTNFN 401
T + V GP C + D VFT + LPE++ D+LV D GAY + +N+N
Sbjct: 332 --TVETVVAGPLCESGD-VFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYN 387
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 79 YAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVS------- 131
Y +K N P ++ L LG +++ + +A L L+ + Y N P++
Sbjct: 83 YPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAXA-----YNNEGAPITVNGFKDR 137
Query: 132 ---HIKY-AASVGVNLT-TFDSIQELDKI-----RKWHPKCELLIRIKSPVDGGARYP-- 179
+I + AA G N+T T + + EL+ I ++ PK + +R++ G +
Sbjct: 138 ELINIGFIAAEXGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKS 197
Query: 180 --LDSKFGANPEEVAHLLGAAQASGL--AVIGVAFHIGSEATNLDAFHAAIAEAKTVFET 235
++SKFG E+ + + + L + FH+GS+ T + A+ EA ++
Sbjct: 198 GGINSKFGLTSTELIEAVNLLKENKLLEQFTXIHFHLGSQITEIHPLKKALNEAGNIYTE 257
Query: 236 AARLGMTKMRVLDIGGGFAC 255
+ G ++ +++GGG A
Sbjct: 258 LRKXGAKNLKAINLGGGLAV 277
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 33/258 (12%)
Query: 79 YAVKCNPEPAILETLAALGS--NFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYA 136
Y +K N ++E+L G + S +E+ AVLA + +I N K +I+ A
Sbjct: 124 YPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLA 183
Query: 137 ASVGVNL-----TTFDSIQE----LDKIRKWHPKCELLIRIKSPVDGGARYP----LDSK 183
+G + + + E LD+ + + L +R + G ++ SK
Sbjct: 184 L-IGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSK 242
Query: 184 FGANPEEVAHLLGAAQASGL--AVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGM 241
FG +V L+ + +G ++ + FH+GS+ N+ + E+ + +LG+
Sbjct: 243 FGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGV 302
Query: 242 TKMRVLDIGGGF-------------ACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISE 288
++ D+GGG + N G +E A+ I AI E H +VI+E
Sbjct: 303 N-IQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDAC-EENGLPHPTVITE 360
Query: 289 PGRFLADTAFTLATKVIG 306
GR + L + +IG
Sbjct: 361 SGRAVTAHHTVLVSNIIG 378
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 109/275 (39%), Gaps = 31/275 (11%)
Query: 47 QELDEPFYVLDLGVVISLYHQLISNL-PMVHPYYAVKCNPEPAILETLAALGSNFDCASP 105
QE P +V+D S + + + +YA K + ++ G D +
Sbjct: 36 QEYGTPLFVIDEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCTG 95
Query: 106 SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKC--- 162
E+ L S P+RI K VS + A GV DS+ E++++ +
Sbjct: 96 GELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIV 155
Query: 163 -ELLIRIKSPVDGGARYPL-----DSKFG---ANPEEVAHLLGAAQASGLAVIGVAFHIG 213
++L+R+ V+ + D KFG A+ +A + L ++G+ HIG
Sbjct: 156 QDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIG 215
Query: 214 SEATNLDAF----HAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------PGFHEA 262
S+ ++D F H I + V ++ +D+GGG + P E
Sbjct: 216 SQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAEL 275
Query: 263 ASIIKDAIQTYFPNETAAGHL---SVISEPGRFLA 294
A+ + T +E+ A L ++ EPGR +A
Sbjct: 276 AA----KLGTIVSDESTAVGLPTPKLVVEPGRAIA 306
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 30/224 (13%)
Query: 97 GSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIR 156
G D + E+ L S P+RI K VS + A GV DS+ E++++
Sbjct: 89 GLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLD 148
Query: 157 KWHPKC----ELLIRIKSPVDGGARYPL-----DSKFG---ANPEEVAHLLGAAQASGLA 204
+ ++L+R+ V+ + D KFG A+ +A + L
Sbjct: 149 AIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLR 208
Query: 205 VIGVAFHIGSEATNLDAF----HAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN---- 256
++G+ HIGS+ ++D F H I + V ++ +D+GGG +
Sbjct: 209 LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPS 268
Query: 257 ---PGFHEAASIIKDAIQTYFPNETAAGHL---SVISEPGRFLA 294
P E A+ + T +E+ A L ++ EPGR +A
Sbjct: 269 DDPPPIAELAA----KLGTIVSDESTAVGLPTPKLVVEPGRAIA 308
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKW|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 30/243 (12%)
Query: 78 YYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAA 137
+YA K + ++ G D + E+ L S P+RI K VS + A
Sbjct: 68 HYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 127
Query: 138 SVGVNLTTFDSIQELDKIRKWHPKC----ELLIRIKSPVDGGARYPL-----DSKFG--- 185
GV DS E++++ + ++L+R+ V+ + D KFG
Sbjct: 128 KAGVGHIVVDSXTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSV 187
Query: 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAF----HAAIAEAKTVFETAARLGM 241
A+ A + L ++G+ HIGS+ ++D F H I + V
Sbjct: 188 ASGAAXAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKT 247
Query: 242 TKMRVLDIGGGFACN-------PGFHEAASIIKDAIQTYFPNETAAGHL---SVISEPGR 291
++ +D+GGG + P E A+ + T +E+ A L ++ EPGR
Sbjct: 248 AQIATVDLGGGLGISYLPSDDPPPIAELAA----KLGTIVSDESTAVGLPTPKLVVEPGR 303
Query: 292 FLA 294
+A
Sbjct: 304 AIA 306
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 31 KDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPY----YAVKCNPE 86
+ G + E SI+ +PF D VV+ Y I ++ M HP Y+V +
Sbjct: 539 RGGMVFELANSIV-------QPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSL 591
Query: 87 PAILETLAALGS-------NFDCASPSEIQ----AVLALSVS-------PDRIIYANAC- 127
+ ++ + S +FD ++P ++ ++ L + PDR Y +
Sbjct: 592 FSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIY 651
Query: 128 KPVSHIKYAASV--GVNLTTFDSIQELDKIRKW 158
P SH KYA G+ FD ++D + W
Sbjct: 652 APSSHNKYAGESFPGIYDALFDIESKVDPSKAW 684
>pdb|1Q3U|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3V|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
Length = 347
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 68 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 123
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 124 IRKENVDAG 132
>pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
pdb|3CRX|B Chain B, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
Length = 343
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 64 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 119
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 120 IRKENVDAG 128
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1MA7|A Chain A, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
pdb|1MA7|B Chain B, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
Length = 349
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 70 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 125
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 126 IRKENVDAG 134
>pdb|2CRX|A Chain A, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|2CRX|B Chain B, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|1NZB|A Chain A, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|B Chain B, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|E Chain E, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|F Chain F, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|A Chain A, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|B Chain B, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|E Chain E, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|F Chain F, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|3MGV|A Chain A, Cre Recombinase-Dna Transition State
pdb|3MGV|B Chain B, Cre Recombinase-Dna Transition State
pdb|3MGV|C Chain C, Cre Recombinase-Dna Transition State
pdb|3MGV|D Chain D, Cre Recombinase-Dna Transition State
Length = 343
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 64 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 119
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 120 IRKENVDAG 128
>pdb|2HOF|A Chain A, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOF|B Chain B, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOI|A Chain A, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|B Chain B, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|G Chain G, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|H Chain H, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
Length = 343
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 64 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 119
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 120 IRKENVDAG 128
>pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|5CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 343
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 64 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 119
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 120 IRKENVDAG 128
>pdb|3MT1|A Chain A, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
pdb|3MT1|B Chain B, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
Length = 365
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 350 NNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAI 408
N ++ + G +C A D EL+V D + F D YT FNG AI
Sbjct: 282 NEGSHSYXICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTXVKKNWFNGVKXPAI 340
>pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|4CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 322
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 45 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 100
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 101 IRKENVDAG 109
>pdb|1PVQ|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVQ|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVR|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Loxp (Wildtype)
Recognition Site
pdb|1PVR|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Loxp (Wildtype)
Recognition Site
Length = 349
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 70 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 125
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 126 IRKENVDAG 134
>pdb|1PVP|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVP|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
Length = 349
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 70 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 125
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 126 IRKENVDAG 134
>pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|3C28|A Chain A, Crystal Structure Of The Product Synapse Complex
pdb|3C28|B Chain B, Crystal Structure Of The Product Synapse Complex
pdb|3C29|A Chain A, Cre-Loxp Synaptic Structure
pdb|3C29|B Chain B, Cre-Loxp Synaptic Structure
pdb|3C29|G Chain G, Cre-Loxp Synaptic Structure
pdb|3C29|H Chain H, Cre-Loxp Synaptic Structure
Length = 322
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 45 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 100
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 101 IRKENVDAG 109
>pdb|1XO0|A Chain A, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
pdb|1XO0|B Chain B, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
Length = 324
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 45 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 100
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 101 IRKENVDAG 109
>pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 323
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 44 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 99
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 100 IRKENVDAG 108
>pdb|1XNS|A Chain A, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
pdb|1XNS|B Chain B, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
Length = 324
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 45 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 100
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 101 IRKENVDAG 109
>pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 324
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243
F A PE+V L QA GLAV + H+G L+ H + A L M +
Sbjct: 45 FPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ----LNMLHRRSGLPRPSDSNAVSLVMRR 100
Query: 244 MRVLDIGGG 252
+R ++ G
Sbjct: 101 IRKENVDAG 109
>pdb|1PRT|B Chain B, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|H Chain H, The Crystal Structure Of Pertussis Toxin
pdb|1PTO|B Chain B, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 196
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 162 CELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDA 221
C + +R PV G P D K+ + + +L +G I V H+ E D
Sbjct: 117 CAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAG---ISVRVHVSKEEQYYDY 173
Query: 222 FHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPG 258
A FET A G++ CNPG
Sbjct: 174 EDA-------TFETYALTGIS-----------ICNPG 192
>pdb|1PTO|H Chain H, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 198
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 162 CELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDA 221
C + +R PV G P D K+ + + +L +G I V H+ E D
Sbjct: 119 CAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAG---ISVRVHVSKEEQYYDY 175
Query: 222 FHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPG 258
A FET A G++ CNPG
Sbjct: 176 EDA-------TFETYALTGIS-----------ICNPG 194
>pdb|1BCP|B Chain B, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|H Chain H, Binary Complex Of Pertussis Toxin And Atp
Length = 199
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 162 CELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDA 221
C + +R PV G P D K+ + + +L +G I V H+ E D
Sbjct: 120 CAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAG---ISVRVHVSKEEQYYDY 176
Query: 222 FHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPG 258
A FET A G++ CNPG
Sbjct: 177 EDA-------TFETYALTGIS-----------ICNPG 195
>pdb|1RYA|A Chain A, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|1RYA|B Chain B, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|2GT2|A Chain A, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|B Chain B, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|C Chain C, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|D Chain D, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
Length = 160
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 296 TAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTY 354
T FT V+G R R E + D ++ + WL+S+ ++A + H+N+R Y
Sbjct: 97 TDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA-------SDNVHANSRAY 148
>pdb|2GT4|A Chain A, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|B Chain B, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|C Chain C, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
Length = 160
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 296 TAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTY 354
T FT V+G R R E + D ++ + WL+S+ ++A + H+N+R Y
Sbjct: 97 TDFTTHFVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA-------SDNVHANSRAY 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,662,183
Number of Sequences: 62578
Number of extensions: 517129
Number of successful extensions: 1354
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 57
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)