Query 045356
Match_columns 419
No_of_seqs 184 out of 1679
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0622 Ornithine decarboxylas 100.0 1.5E-70 3.3E-75 522.7 39.7 370 35-417 36-427 (448)
2 cd06831 PLPDE_III_ODC_like_AZI 100.0 7E-69 1.5E-73 537.3 44.4 358 48-413 10-383 (394)
3 COG0019 LysA Diaminopimelate d 100.0 5E-67 1.1E-71 519.3 41.0 349 47-410 23-393 (394)
4 cd06830 PLPDE_III_ADC Type III 100.0 3.9E-65 8.6E-70 514.0 40.3 353 48-410 2-408 (409)
5 cd00622 PLPDE_III_ODC Type III 100.0 5.7E-64 1.2E-68 499.8 44.8 349 50-409 1-360 (362)
6 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 8.3E-64 1.8E-68 498.1 41.3 345 47-410 8-367 (368)
7 TIGR01048 lysA diaminopimelate 100.0 3.1E-63 6.7E-68 503.3 41.6 352 48-411 22-395 (417)
8 cd06828 PLPDE_III_DapDC Type I 100.0 3.9E-63 8.5E-68 495.8 40.5 351 49-410 1-372 (373)
9 cd06836 PLPDE_III_ODC_DapDC_li 100.0 6.8E-63 1.5E-67 493.6 40.5 350 50-410 2-376 (379)
10 cd06810 PLPDE_III_ODC_DapDC_li 100.0 6E-62 1.3E-66 486.4 42.4 350 51-409 1-366 (368)
11 cd06841 PLPDE_III_MccE_like Ty 100.0 4E-62 8.8E-67 489.0 39.7 344 48-410 4-374 (379)
12 cd06839 PLPDE_III_Btrk_like Ty 100.0 1.6E-61 3.5E-66 485.6 42.8 351 48-410 4-381 (382)
13 PLN02537 diaminopimelate decar 100.0 2.8E-61 6.2E-66 487.3 43.4 347 50-411 17-385 (410)
14 PRK11165 diaminopimelate decar 100.0 3E-61 6.5E-66 487.1 42.9 344 48-411 23-397 (420)
15 TIGR03099 dCO2ase_PEP1 pyridox 100.0 7.8E-61 1.7E-65 482.8 43.3 356 48-410 21-397 (398)
16 cd06843 PLPDE_III_PvsE_like Ty 100.0 1E-60 2.3E-65 478.5 42.3 346 51-410 2-376 (377)
17 cd06829 PLPDE_III_CANSDC Type 100.0 2.4E-60 5.3E-65 469.9 37.1 331 51-411 1-345 (346)
18 cd06842 PLPDE_III_Y4yA_like Ty 100.0 2.6E-60 5.6E-65 481.0 36.7 344 48-410 7-422 (423)
19 TIGR01047 nspC carboxynorsperm 100.0 2.4E-59 5.2E-64 467.4 38.2 335 49-411 1-359 (380)
20 PRK08961 bifunctional aspartat 100.0 3.6E-59 7.8E-64 508.1 40.9 342 48-410 500-858 (861)
21 PRK05354 arginine decarboxylas 100.0 3.6E-48 7.9E-53 402.8 41.0 369 32-413 47-564 (634)
22 TIGR01273 speA arginine decarb 100.0 2.2E-46 4.7E-51 389.5 41.7 367 34-414 42-558 (624)
23 PLN02439 arginine decarboxylas 100.0 9.2E-43 2E-47 358.3 38.5 347 56-413 4-490 (559)
24 PF02784 Orn_Arg_deC_N: Pyrido 100.0 9.8E-43 2.1E-47 329.8 22.6 237 57-296 1-251 (251)
25 cd00430 PLPDE_III_AR Type III 100.0 9.6E-35 2.1E-39 290.0 26.2 312 52-389 2-332 (367)
26 TIGR00492 alr alanine racemase 100.0 1.4E-32 3E-37 274.3 25.2 313 52-389 3-336 (367)
27 PRK00053 alr alanine racemase; 100.0 2.1E-31 4.5E-36 265.4 26.1 313 51-389 3-332 (363)
28 cd06826 PLPDE_III_AR2 Type III 100.0 2.2E-30 4.7E-35 257.9 25.5 305 52-389 2-330 (365)
29 PRK13340 alanine racemase; Rev 100.0 2.7E-30 5.8E-35 260.6 26.0 307 51-389 40-370 (406)
30 cd06827 PLPDE_III_AR_proteobac 100.0 2.5E-30 5.4E-35 255.8 24.7 307 52-389 2-323 (354)
31 COG0787 Alr Alanine racemase [ 100.0 2E-29 4.3E-34 245.1 25.9 305 52-389 5-328 (360)
32 cd06808 PLPDE_III Type III Pyr 100.0 6.1E-29 1.3E-33 229.0 24.6 188 61-256 1-194 (211)
33 cd06825 PLPDE_III_VanT Type II 100.0 3.6E-29 7.8E-34 249.0 24.5 313 52-389 2-333 (368)
34 COG1166 SpeA Arginine decarbox 100.0 2.9E-27 6.3E-32 233.0 28.6 272 35-310 66-378 (652)
35 PRK03646 dadX alanine racemase 100.0 8.5E-28 1.8E-32 237.7 24.2 305 52-389 4-324 (355)
36 cd06819 PLPDE_III_LS_D-TA Type 99.9 3.8E-27 8.2E-32 234.6 17.4 253 48-322 4-278 (358)
37 PRK11930 putative bifunctional 99.9 1.7E-26 3.6E-31 252.5 22.0 323 34-389 445-789 (822)
38 cd06815 PLPDE_III_AR_like_1 Ty 99.9 2.6E-26 5.6E-31 227.7 18.0 315 52-400 2-347 (353)
39 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 3E-25 6.6E-30 222.2 25.3 196 47-255 2-216 (374)
40 cd06811 PLPDE_III_yhfX_like Ty 99.9 2E-23 4.4E-28 208.7 32.1 259 36-309 11-288 (382)
41 cd06818 PLPDE_III_cryptic_DSD 99.9 8.7E-24 1.9E-28 211.9 24.4 239 49-309 1-260 (382)
42 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 2.6E-23 5.6E-28 208.7 23.8 246 47-306 7-286 (388)
43 cd06821 PLPDE_III_D-TA Type II 99.9 1.7E-23 3.6E-28 208.6 17.5 243 47-308 5-265 (361)
44 cd06820 PLPDE_III_LS_D-TA_like 99.9 3E-22 6.4E-27 199.1 22.1 194 50-255 2-210 (353)
45 cd07376 PLPDE_III_DSD_D-TA_lik 99.8 1.6E-20 3.5E-25 186.0 15.9 182 60-255 1-203 (345)
46 PF00278 Orn_DAP_Arg_deC: Pyri 99.8 5.2E-21 1.1E-25 159.6 9.4 105 299-410 1-115 (116)
47 cd06814 PLPDE_III_DSD_D-TA_lik 99.8 3.5E-19 7.5E-24 177.8 23.5 196 46-255 4-227 (379)
48 cd06817 PLPDE_III_DSD Type III 99.8 3.2E-19 6.9E-24 178.4 22.9 195 48-255 3-225 (389)
49 cd00635 PLPDE_III_YBL036c_like 99.8 4.9E-19 1.1E-23 164.6 21.6 185 56-252 3-200 (222)
50 PF01168 Ala_racemase_N: Alani 99.8 1.5E-19 3.3E-24 167.4 17.1 183 56-253 1-193 (218)
51 cd06824 PLPDE_III_Yggs_like Py 99.7 1.6E-15 3.4E-20 141.2 21.5 181 60-254 8-203 (224)
52 TIGR00044 pyridoxal phosphate 99.7 2.6E-15 5.7E-20 140.0 22.4 180 60-252 10-205 (229)
53 COG3616 Predicted amino acid a 99.6 3.1E-14 6.7E-19 139.1 16.7 196 47-252 14-218 (368)
54 COG3457 Predicted amino acid r 99.5 6.2E-12 1.3E-16 117.8 21.3 297 51-388 3-332 (353)
55 cd06822 PLPDE_III_YBL036c_euk 99.4 1.6E-10 3.4E-15 107.1 21.5 168 74-252 23-205 (227)
56 COG0325 Predicted enzyme with 99.2 1.3E-09 2.9E-14 98.7 20.2 180 59-250 8-200 (228)
57 KOG3157 Proline synthetase co- 97.9 0.00022 4.9E-09 63.5 12.8 131 74-215 31-173 (244)
58 PF00842 Ala_racemase_C: Alani 97.8 1.4E-05 3E-10 67.6 3.3 87 297-389 1-95 (129)
59 cd07948 DRE_TIM_HCS Saccharomy 91.6 5.6 0.00012 37.9 13.8 27 184-211 164-192 (262)
60 PF07745 Glyco_hydro_53: Glyco 90.8 17 0.00038 35.8 16.6 139 99-275 3-168 (332)
61 PRK01060 endonuclease IV; Prov 87.9 7.5 0.00016 37.0 11.7 99 186-289 44-146 (281)
62 cd03174 DRE_TIM_metallolyase D 84.9 20 0.00043 33.6 12.8 150 50-211 10-198 (265)
63 PF01261 AP_endonuc_2: Xylose 84.9 8.5 0.00018 34.3 9.8 98 189-294 27-137 (213)
64 PRK05567 inosine 5'-monophosph 78.6 31 0.00067 35.9 12.4 95 50-149 240-362 (486)
65 cd07940 DRE_TIM_IPMS 2-isoprop 76.9 55 0.0012 31.0 12.7 28 184-211 166-197 (268)
66 PLN02746 hydroxymethylglutaryl 76.8 83 0.0018 31.3 14.7 18 87-104 71-89 (347)
67 cd07939 DRE_TIM_NifV Streptomy 76.4 70 0.0015 30.2 14.5 28 184-212 162-191 (259)
68 cd07944 DRE_TIM_HOA_like 4-hyd 76.3 72 0.0016 30.3 14.6 27 184-211 161-191 (266)
69 PF04131 NanE: Putative N-acet 75.9 13 0.00028 33.5 7.4 72 86-159 81-166 (192)
70 cd07938 DRE_TIM_HMGL 3-hydroxy 75.7 51 0.0011 31.5 12.1 26 186-211 175-201 (274)
71 TIGR02090 LEU1_arch isopropylm 75.3 93 0.002 31.1 14.5 25 186-211 167-192 (363)
72 TIGR01302 IMP_dehydrog inosine 74.8 81 0.0018 32.5 14.1 96 49-149 235-358 (450)
73 TIGR01306 GMP_reduct_2 guanosi 74.8 66 0.0014 31.6 12.7 95 49-148 107-228 (321)
74 PF01136 Peptidase_U32: Peptid 73.7 21 0.00046 32.9 8.8 82 87-169 5-92 (233)
75 PRK07535 methyltetrahydrofolat 73.1 48 0.001 31.5 11.1 130 33-188 55-205 (261)
76 cd07943 DRE_TIM_HOA 4-hydroxy- 71.9 90 0.002 29.5 14.6 147 51-211 14-193 (263)
77 cd04738 DHOD_2_like Dihydrooro 71.2 11 0.00023 37.2 6.4 28 120-147 282-309 (327)
78 TIGR02090 LEU1_arch isopropylm 70.1 1.2E+02 0.0025 30.3 13.6 26 187-212 139-164 (363)
79 cd00381 IMPDH IMPDH: The catal 68.9 1.2E+02 0.0026 29.7 13.5 26 121-146 200-225 (325)
80 PTZ00372 endonuclease 4-like p 68.5 83 0.0018 32.0 12.1 98 186-288 173-274 (413)
81 PRK08195 4-hyroxy-2-oxovalerat 67.8 1.3E+02 0.0028 29.7 14.2 146 52-211 18-197 (337)
82 PRK05718 keto-hydroxyglutarate 67.5 85 0.0018 28.8 11.1 106 56-170 24-136 (212)
83 TIGR02660 nifV_homocitr homoci 67.1 1.4E+02 0.003 29.8 14.2 25 186-211 168-193 (365)
84 PRK13209 L-xylulose 5-phosphat 66.8 70 0.0015 30.2 11.0 68 183-253 51-122 (283)
85 PRK05692 hydroxymethylglutaryl 66.6 1.1E+02 0.0025 29.4 12.3 24 187-211 182-207 (287)
86 cd03174 DRE_TIM_metallolyase D 66.5 1.1E+02 0.0024 28.4 13.9 19 87-105 22-41 (265)
87 TIGR01037 pyrD_sub1_fam dihydr 65.4 80 0.0017 30.4 11.2 45 56-103 140-189 (300)
88 PRK13210 putative L-xylulose 5 65.4 62 0.0013 30.6 10.3 66 184-252 47-116 (284)
89 cd02809 alpha_hydroxyacid_oxid 65.1 60 0.0013 31.4 10.2 15 102-116 180-194 (299)
90 PF11823 DUF3343: Protein of u 64.3 29 0.00063 25.8 6.2 63 143-210 5-71 (73)
91 TIGR03217 4OH_2_O_val_ald 4-hy 63.8 1.6E+02 0.0034 29.1 14.7 146 52-211 17-196 (333)
92 PRK05458 guanosine 5'-monophos 63.8 1.2E+02 0.0026 29.9 11.9 92 52-147 113-230 (326)
93 TIGR02708 L_lactate_ox L-lacta 63.2 77 0.0017 31.8 10.6 82 63-147 218-312 (367)
94 PF03851 UvdE: UV-endonuclease 63.1 39 0.00084 32.4 8.2 83 164-255 60-158 (275)
95 cd07940 DRE_TIM_IPMS 2-isoprop 63.0 1.2E+02 0.0025 28.8 11.6 37 186-224 140-176 (268)
96 smart00518 AP2Ec AP endonuclea 62.3 1.4E+02 0.003 28.0 12.6 95 186-289 42-140 (273)
97 TIGR00587 nfo apurinic endonuc 62.2 1.4E+02 0.0031 28.2 12.2 99 187-291 44-148 (274)
98 PTZ00314 inosine-5'-monophosph 61.6 1.6E+02 0.0035 30.8 13.2 97 48-149 251-375 (495)
99 PRK15452 putative protease; Pr 61.3 2E+02 0.0044 29.6 14.1 110 57-169 44-166 (443)
100 PRK09856 fructoselysine 3-epim 61.2 1E+02 0.0022 29.0 10.8 95 189-290 47-150 (275)
101 PRK04452 acetyl-CoA decarbonyl 60.3 37 0.0008 33.3 7.6 85 35-125 112-210 (319)
102 PRK11858 aksA trans-homoaconit 59.7 2E+02 0.0042 28.9 14.2 25 186-211 171-196 (378)
103 PRK12677 xylose isomerase; Pro 59.6 1.4E+02 0.0031 30.0 12.0 96 191-290 69-180 (384)
104 COG0042 tRNA-dihydrouridine sy 59.4 51 0.0011 32.4 8.5 88 51-139 113-219 (323)
105 TIGR01501 MthylAspMutase methy 59.0 94 0.002 26.3 9.0 52 193-255 43-94 (134)
106 PRK06552 keto-hydroxyglutarate 58.9 67 0.0015 29.5 8.7 98 57-160 23-130 (213)
107 cd07939 DRE_TIM_NifV Streptomy 58.4 1.6E+02 0.0035 27.6 13.1 63 154-228 114-176 (259)
108 cd07943 DRE_TIM_HOA 4-hydroxy- 58.3 1.7E+02 0.0036 27.6 14.4 131 86-229 24-179 (263)
109 PRK06552 keto-hydroxyglutarate 57.8 1.5E+02 0.0033 27.1 15.0 148 33-209 25-183 (213)
110 PRK05848 nicotinate-nucleotide 56.9 1.1E+02 0.0023 29.3 10.1 57 98-159 185-250 (273)
111 TIGR00542 hxl6Piso_put hexulos 56.9 1.5E+02 0.0033 28.0 11.3 67 183-252 46-116 (279)
112 PRK12331 oxaloacetate decarbox 56.7 2.4E+02 0.0053 29.1 13.6 28 184-212 177-206 (448)
113 cd02911 arch_FMN Archeal FMN-b 56.7 1.1E+02 0.0023 28.5 9.9 88 54-146 121-219 (233)
114 PRK05660 HemN family oxidoredu 55.9 68 0.0015 32.2 9.0 56 50-106 67-129 (378)
115 cd02811 IDI-2_FMN Isopentenyl- 55.6 1.6E+02 0.0034 28.9 11.3 88 57-148 162-285 (326)
116 PRK05718 keto-hydroxyglutarate 55.4 50 0.0011 30.3 7.3 134 36-196 30-174 (212)
117 COG3010 NanE Putative N-acetyl 55.0 54 0.0012 30.0 7.1 70 88-160 118-203 (229)
118 PRK11858 aksA trans-homoaconit 54.9 2.3E+02 0.0051 28.4 14.5 54 87-142 29-90 (378)
119 PRK02308 uvsE putative UV dama 54.8 89 0.0019 30.4 9.3 132 146-288 44-186 (303)
120 PRK06843 inosine 5-monophospha 54.4 2.5E+02 0.0054 28.5 13.0 16 101-116 201-216 (404)
121 PRK03692 putative UDP-N-acetyl 54.3 61 0.0013 30.5 7.8 114 81-208 47-165 (243)
122 TIGR00538 hemN oxygen-independ 54.0 1.1E+02 0.0024 31.4 10.5 47 51-98 112-162 (455)
123 cd07947 DRE_TIM_Re_CS Clostrid 53.3 2.1E+02 0.0046 27.4 14.3 29 183-211 180-211 (279)
124 cd04724 Tryptophan_synthase_al 53.2 1.9E+02 0.0042 26.9 12.1 73 63-138 66-150 (242)
125 PF01729 QRPTase_C: Quinolinat 53.1 58 0.0012 28.8 7.0 85 61-148 66-156 (169)
126 TIGR02660 nifV_homocitr homoci 52.2 2.5E+02 0.0055 27.9 13.0 40 187-228 140-179 (365)
127 TIGR03128 RuMP_HxlA 3-hexulose 52.0 1.8E+02 0.0038 26.1 18.5 97 50-147 24-133 (206)
128 TIGR01182 eda Entner-Doudoroff 51.9 1.9E+02 0.0041 26.4 12.0 101 101-212 66-179 (204)
129 PRK08208 coproporphyrinogen II 51.8 1.1E+02 0.0023 31.4 9.8 55 50-105 100-162 (430)
130 PRK14847 hypothetical protein; 51.0 2.5E+02 0.0054 27.8 11.7 152 87-268 57-230 (333)
131 PRK15447 putative protease; Pr 50.8 1.9E+02 0.0041 28.0 10.9 98 56-159 45-153 (301)
132 COG0826 Collagenase and relate 50.5 2.6E+02 0.0056 27.8 11.9 103 55-160 45-160 (347)
133 PRK05286 dihydroorotate dehydr 49.7 61 0.0013 32.1 7.4 23 120-142 291-313 (344)
134 PF01070 FMN_dh: FMN-dependent 49.4 95 0.0021 30.9 8.7 81 63-147 215-309 (356)
135 PRK01130 N-acetylmannosamine-6 49.4 2.1E+02 0.0045 26.1 14.1 58 87-148 26-96 (221)
136 PLN02274 inosine-5'-monophosph 48.8 2.1E+02 0.0045 30.0 11.5 16 101-116 296-311 (505)
137 PRK14040 oxaloacetate decarbox 48.8 3.7E+02 0.0081 28.9 14.4 23 131-153 101-124 (593)
138 PRK13347 coproporphyrinogen II 48.6 94 0.002 32.0 8.9 43 56-98 117-163 (453)
139 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.3 2.5E+02 0.0054 26.7 13.3 25 186-211 175-200 (275)
140 TIGR02635 RhaI_grampos L-rhamn 48.1 1.8E+02 0.004 29.2 10.5 95 190-289 70-177 (378)
141 TIGR01303 IMP_DH_rel_1 IMP deh 47.7 3.5E+02 0.0075 28.2 12.9 106 34-149 225-359 (475)
142 PRK09249 coproporphyrinogen II 47.6 1.6E+02 0.0035 30.2 10.5 48 50-98 111-162 (453)
143 TIGR01229 rocF_arginase argina 46.8 2.1E+02 0.0046 27.6 10.6 95 116-211 163-269 (300)
144 TIGR00381 cdhD CO dehydrogenas 46.5 68 0.0015 32.2 7.0 85 35-125 176-275 (389)
145 TIGR03234 OH-pyruv-isom hydrox 46.5 1.4E+02 0.003 27.7 9.1 93 191-290 41-144 (254)
146 COG0635 HemN Coproporphyrinoge 46.2 85 0.0018 32.0 8.0 47 243-292 87-135 (416)
147 COG1303 Uncharacterized protei 46.1 62 0.0013 28.2 5.7 69 5-79 16-84 (179)
148 cd02072 Glm_B12_BD B12 binding 45.6 1.8E+02 0.004 24.4 9.5 52 193-255 41-92 (128)
149 PRK00278 trpC indole-3-glycero 45.0 2.7E+02 0.0059 26.3 14.3 100 87-209 73-187 (260)
150 PRK07114 keto-hydroxyglutarate 44.9 2.6E+02 0.0056 25.9 12.7 100 101-211 77-190 (222)
151 cd08582 GDPD_like_2 Glyceropho 44.9 2.5E+02 0.0054 25.7 10.7 29 129-157 190-220 (233)
152 COG0157 NadC Nicotinate-nucleo 44.8 41 0.00089 32.1 5.0 30 129-158 197-228 (280)
153 PF01081 Aldolase: KDPG and KH 44.6 94 0.002 28.2 7.2 79 86-171 46-130 (196)
154 PRK15062 hydrogenase isoenzyme 44.4 1E+02 0.0022 30.7 7.8 76 97-173 61-141 (364)
155 PF00682 HMGL-like: HMGL-like 43.9 1.8E+02 0.0039 26.7 9.4 25 187-211 164-189 (237)
156 cd02072 Glm_B12_BD B12 binding 42.6 1.9E+02 0.004 24.3 8.1 81 110-203 22-109 (128)
157 TIGR03581 EF_0839 conserved hy 42.3 27 0.00058 32.1 3.2 66 134-215 142-213 (236)
158 TIGR00640 acid_CoA_mut_C methy 42.3 2.1E+02 0.0045 24.1 9.8 86 57-143 13-108 (132)
159 PRK07259 dihydroorotate dehydr 42.2 2.8E+02 0.0061 26.6 10.7 39 33-71 74-116 (301)
160 TIGR02631 xylA_Arthro xylose i 41.9 3.2E+02 0.0069 27.5 11.2 95 191-290 70-181 (382)
161 cd07948 DRE_TIM_HCS Saccharomy 41.9 3.1E+02 0.0067 26.0 13.5 67 149-227 111-177 (262)
162 cd03319 L-Ala-DL-Glu_epimerase 41.6 3.3E+02 0.0072 26.2 11.9 25 189-214 266-290 (316)
163 cd08564 GDPD_GsGDE_like Glycer 41.3 3.1E+02 0.0066 25.8 13.1 101 51-154 149-262 (265)
164 cd00423 Pterin_binding Pterin 41.2 2.7E+02 0.0058 26.2 10.1 27 76-102 98-125 (258)
165 PRK13523 NADPH dehydrogenase N 40.9 1.4E+02 0.003 29.6 8.3 45 161-215 207-251 (337)
166 cd02922 FCB2_FMN Flavocytochro 40.6 3.1E+02 0.0067 27.2 10.7 82 63-148 203-301 (344)
167 PRK06015 keto-hydroxyglutarate 40.6 1.4E+02 0.003 27.2 7.6 64 101-171 62-126 (201)
168 TIGR02151 IPP_isom_2 isopenten 40.1 2.4E+02 0.0052 27.7 9.9 43 59-104 165-211 (333)
169 cd04740 DHOD_1B_like Dihydroor 39.9 3.1E+02 0.0066 26.2 10.5 39 33-71 72-114 (296)
170 PRK09016 quinolinate phosphori 39.7 1.9E+02 0.0041 28.1 8.8 38 98-139 211-248 (296)
171 PF03060 NMO: Nitronate monoox 39.7 2E+02 0.0043 28.3 9.2 100 56-161 45-158 (330)
172 cd02071 MM_CoA_mut_B12_BD meth 39.6 2.1E+02 0.0046 23.4 10.6 70 73-143 26-105 (122)
173 cd07945 DRE_TIM_CMS Leptospira 39.5 3.5E+02 0.0076 25.9 12.5 24 187-211 174-199 (280)
174 cd00405 PRAI Phosphoribosylant 39.5 2.2E+02 0.0047 25.5 8.9 64 128-212 7-81 (203)
175 PRK08195 4-hyroxy-2-oxovalerat 38.9 3.9E+02 0.0085 26.3 12.3 14 182-195 198-211 (337)
176 cd04723 HisA_HisF Phosphoribos 38.5 3.2E+02 0.007 25.2 12.5 73 120-196 80-156 (233)
177 PRK14339 (dimethylallyl)adenos 38.2 4.5E+02 0.0097 26.7 12.0 62 164-227 239-304 (420)
178 PRK09058 coproporphyrinogen II 38.2 2.3E+02 0.0051 29.1 9.9 57 50-107 123-186 (449)
179 PRK10128 2-keto-3-deoxy-L-rham 37.8 2.2E+02 0.0047 27.2 8.8 76 82-160 24-113 (267)
180 PRK10558 alpha-dehydro-beta-de 37.6 2.5E+02 0.0055 26.5 9.3 82 83-167 26-121 (256)
181 cd02810 DHOD_DHPD_FMN Dihydroo 37.4 3.4E+02 0.0074 25.7 10.4 40 32-71 79-123 (289)
182 TIGR03234 OH-pyruv-isom hydrox 36.4 3.5E+02 0.0075 25.0 11.1 27 184-213 153-179 (254)
183 cd04729 NanE N-acetylmannosami 36.4 3.3E+02 0.0071 24.7 12.0 58 87-147 30-99 (219)
184 cd04728 ThiG Thiazole synthase 36.1 2.4E+02 0.0051 26.6 8.5 22 121-142 178-199 (248)
185 PRK07379 coproporphyrinogen II 36.1 4.7E+02 0.01 26.4 13.3 75 148-228 114-190 (400)
186 PRK05848 nicotinate-nucleotide 35.8 71 0.0015 30.6 5.2 119 62-196 104-248 (273)
187 PRK07114 keto-hydroxyglutarate 35.7 2.6E+02 0.0056 25.9 8.7 71 72-144 12-95 (222)
188 PRK06559 nicotinate-nucleotide 35.6 64 0.0014 31.2 4.9 118 73-211 132-273 (290)
189 TIGR03239 GarL 2-dehydro-3-deo 35.6 2.9E+02 0.0063 26.0 9.3 83 82-167 18-114 (249)
190 TIGR03822 AblA_like_2 lysine-2 35.2 4.3E+02 0.0094 25.7 11.7 146 31-200 120-292 (321)
191 PF11181 YflT: Heat induced st 35.1 77 0.0017 25.3 4.6 83 108-203 16-99 (103)
192 TIGR03128 RuMP_HxlA 3-hexulose 34.8 3.3E+02 0.0072 24.2 11.0 81 87-172 40-136 (206)
193 PRK06543 nicotinate-nucleotide 34.6 76 0.0017 30.5 5.2 53 128-195 201-255 (281)
194 PRK00208 thiG thiazole synthas 34.4 2.6E+02 0.0056 26.4 8.5 22 121-142 178-199 (250)
195 TIGR01182 eda Entner-Doudoroff 34.3 1.6E+02 0.0034 26.9 7.0 87 49-142 32-123 (204)
196 COG2185 Sbm Methylmalonyl-CoA 34.3 1.2E+02 0.0026 26.0 5.8 67 74-142 40-117 (143)
197 PRK06106 nicotinate-nucleotide 34.1 80 0.0017 30.4 5.2 105 74-195 130-256 (281)
198 TIGR03151 enACPred_II putative 34.0 4.5E+02 0.0097 25.5 11.2 36 88-125 100-137 (307)
199 PRK13802 bifunctional indole-3 34.0 4.2E+02 0.0092 29.0 11.2 61 86-146 149-239 (695)
200 PRK08385 nicotinate-nucleotide 34.0 3.9E+02 0.0085 25.6 9.9 86 49-138 117-221 (278)
201 COG0635 HemN Coproporphyrinoge 34.0 2.5E+02 0.0054 28.6 9.2 56 50-106 96-159 (416)
202 PRK07428 nicotinate-nucleotide 33.9 4.4E+02 0.0096 25.4 10.9 37 98-138 199-235 (288)
203 PRK05437 isopentenyl pyrophosp 33.8 3.7E+02 0.0081 26.6 10.2 45 57-104 170-218 (352)
204 COG4408 Uncharacterized protei 33.8 1.6E+02 0.0035 29.1 7.1 143 22-172 59-220 (431)
205 TIGR01305 GMP_reduct_1 guanosi 33.8 4.8E+02 0.01 25.8 13.4 96 50-148 121-242 (343)
206 TIGR00629 uvde UV damage endon 33.8 3.6E+02 0.0077 26.4 9.7 102 146-255 48-167 (312)
207 TIGR00736 nifR3_rel_arch TIM-b 33.7 3.4E+02 0.0073 25.3 9.2 88 54-146 116-219 (231)
208 PRK09389 (R)-citramalate synth 33.5 5.8E+02 0.012 26.6 13.9 25 186-211 169-194 (488)
209 PF01408 GFO_IDH_MocA: Oxidore 33.5 1.3E+02 0.0029 23.9 6.0 87 65-159 16-109 (120)
210 PLN02535 glycolate oxidase 33.3 3.5E+02 0.0075 27.1 9.8 69 79-148 226-308 (364)
211 cd04743 NPD_PKS 2-Nitropropane 33.2 3E+02 0.0064 27.1 9.1 26 133-158 96-122 (320)
212 PRK06978 nicotinate-nucleotide 33.2 76 0.0017 30.7 5.0 89 102-211 189-281 (294)
213 COG0191 Fba Fructose/tagatose 33.2 1.4E+02 0.0031 28.6 6.7 37 121-157 207-244 (286)
214 cd04722 TIM_phosphate_binding 33.1 3.1E+02 0.0067 23.4 9.6 29 119-147 171-199 (200)
215 TIGR00538 hemN oxygen-independ 32.8 5.6E+02 0.012 26.3 13.3 103 119-228 104-226 (455)
216 cd04732 HisA HisA. Phosphorib 32.8 3.8E+02 0.0083 24.3 10.2 59 87-147 149-219 (234)
217 COG0386 BtuE Glutathione perox 32.7 1E+02 0.0022 26.8 5.1 45 162-216 25-72 (162)
218 PF13679 Methyltransf_32: Meth 32.7 68 0.0015 27.1 4.1 31 224-255 4-38 (141)
219 TIGR01211 ELP3 histone acetylt 32.7 6.2E+02 0.013 26.7 15.2 144 105-270 121-282 (522)
220 PF02581 TMP-TENI: Thiamine mo 32.6 2.1E+02 0.0045 25.2 7.5 91 26-127 29-124 (180)
221 COG1139 Uncharacterized conser 32.5 5.7E+02 0.012 26.3 11.4 104 53-158 82-187 (459)
222 PF01729 QRPTase_C: Quinolinat 32.5 95 0.0021 27.4 5.1 28 129-156 89-118 (169)
223 COG1830 FbaB DhnA-type fructos 32.5 4.5E+02 0.0097 25.1 10.0 98 130-241 46-144 (265)
224 PRK12581 oxaloacetate decarbox 32.4 5.5E+02 0.012 26.7 11.3 20 63-82 73-92 (468)
225 COG0418 PyrC Dihydroorotase [N 31.9 5E+02 0.011 25.4 12.7 36 106-141 58-95 (344)
226 PRK08072 nicotinate-nucleotide 31.8 4.7E+02 0.01 25.1 10.2 37 98-138 191-227 (277)
227 TIGR00075 hypD hydrogenase exp 31.8 1.9E+02 0.0042 28.8 7.5 77 96-173 66-147 (369)
228 PRK09989 hypothetical protein; 31.2 3.6E+02 0.0077 25.0 9.3 90 193-289 44-144 (258)
229 cd04737 LOX_like_FMN L-Lactate 31.1 4.3E+02 0.0093 26.3 10.0 83 63-148 211-306 (351)
230 PRK13125 trpA tryptophan synth 30.9 4.4E+02 0.0095 24.5 14.4 101 10-114 32-151 (244)
231 PRK10550 tRNA-dihydrouridine s 30.8 5.1E+02 0.011 25.2 10.9 82 53-138 111-214 (312)
232 PRK06582 coproporphyrinogen II 30.5 3.8E+02 0.0082 27.0 9.8 55 50-107 71-134 (390)
233 PRK14862 rimO ribosomal protei 30.3 3.6E+02 0.0079 27.6 9.7 43 182-226 275-319 (440)
234 PRK09875 putative hydrolase; P 30.1 4.1E+02 0.0088 25.7 9.5 43 105-148 166-210 (292)
235 TIGR01108 oadA oxaloacetate de 29.9 7.2E+02 0.016 26.6 14.2 27 186-213 175-202 (582)
236 PRK01722 formimidoylglutamase; 29.8 5.2E+02 0.011 25.1 10.4 95 116-211 182-289 (320)
237 TIGR03572 WbuZ glycosyl amidat 29.3 4.4E+02 0.0096 24.0 11.3 59 87-147 156-227 (232)
238 PRK13209 L-xylulose 5-phosphat 29.0 4.9E+02 0.011 24.4 11.0 17 87-103 24-41 (283)
239 TIGR00696 wecB_tagA_cpsF bacte 28.9 1.3E+02 0.0028 26.7 5.4 34 125-158 33-67 (177)
240 PRK08445 hypothetical protein; 28.6 4.3E+02 0.0093 26.2 9.6 80 52-142 69-156 (348)
241 PRK06106 nicotinate-nucleotide 28.6 4.6E+02 0.0099 25.2 9.4 37 98-138 197-233 (281)
242 PRK09140 2-dehydro-3-deoxy-6-p 28.5 4.5E+02 0.0098 23.8 17.6 53 102-158 70-123 (206)
243 PLN02819 lysine-ketoglutarate 28.4 9.8E+02 0.021 27.7 15.3 14 31-44 515-528 (1042)
244 PRK07535 methyltetrahydrofolat 28.3 5.1E+02 0.011 24.5 11.6 55 87-144 58-120 (261)
245 PF01884 PcrB: PcrB family; I 28.3 1.4E+02 0.003 27.9 5.6 43 106-149 171-213 (230)
246 PRK07896 nicotinate-nucleotide 28.0 4.2E+02 0.0092 25.6 9.1 37 98-138 202-238 (289)
247 COG0135 TrpF Phosphoribosylant 28.0 3.9E+02 0.0085 24.4 8.4 47 123-170 6-62 (208)
248 PRK07094 biotin synthase; Prov 27.8 5.6E+02 0.012 24.7 13.4 110 107-223 78-198 (323)
249 COG0800 Eda 2-keto-3-deoxy-6-p 27.5 4.9E+02 0.011 23.9 11.2 115 83-208 48-180 (211)
250 PRK06015 keto-hydroxyglutarate 27.5 2.1E+02 0.0046 26.0 6.6 135 35-196 18-163 (201)
251 TIGR00262 trpA tryptophan synt 27.2 5.3E+02 0.012 24.2 10.1 40 59-98 72-116 (256)
252 PF03060 NMO: Nitronate monoox 27.1 3E+02 0.0065 27.0 8.2 48 77-126 116-165 (330)
253 cd04731 HisF The cyclase subun 27.0 5E+02 0.011 23.9 14.6 51 120-170 73-128 (243)
254 PRK09234 fbiC FO synthase; Rev 26.9 2.6E+02 0.0056 31.4 8.4 59 51-110 552-618 (843)
255 PRK06096 molybdenum transport 26.8 1.1E+02 0.0024 29.5 4.8 109 72-196 121-255 (284)
256 cd04734 OYE_like_3_FMN Old yel 26.7 6.3E+02 0.014 24.9 10.7 46 159-214 206-252 (343)
257 PRK09997 hydroxypyruvate isome 26.5 3.8E+02 0.0081 24.9 8.5 91 192-289 43-144 (258)
258 PRK08385 nicotinate-nucleotide 26.5 1.3E+02 0.0028 29.0 5.2 108 73-196 119-250 (278)
259 PRK07428 nicotinate-nucleotide 26.4 1.1E+02 0.0023 29.6 4.7 115 65-195 121-261 (288)
260 COG1082 IolE Sugar phosphate i 26.4 5.2E+02 0.011 23.8 11.9 69 183-252 39-108 (274)
261 PRK13585 1-(5-phosphoribosyl)- 26.3 5.1E+02 0.011 23.7 15.6 50 120-169 78-132 (241)
262 PRK06543 nicotinate-nucleotide 26.3 5.2E+02 0.011 24.9 9.3 37 98-138 196-232 (281)
263 PRK14336 (dimethylallyl)adenos 26.2 5.1E+02 0.011 26.3 9.9 59 166-226 235-297 (418)
264 cd04733 OYE_like_2_FMN Old yel 26.1 2.1E+02 0.0045 28.2 6.9 45 160-214 215-259 (338)
265 PRK00366 ispG 4-hydroxy-3-meth 26.1 5.1E+02 0.011 25.8 9.3 137 90-229 48-200 (360)
266 PRK09016 quinolinate phosphori 25.8 1.2E+02 0.0027 29.3 5.0 126 65-211 134-284 (296)
267 TIGR02129 hisA_euk phosphoribo 25.7 5.8E+02 0.013 24.1 16.7 81 87-170 41-136 (253)
268 PRK01130 N-acetylmannosamine-6 25.7 4E+02 0.0087 24.1 8.4 73 85-159 106-195 (221)
269 cd02940 DHPD_FMN Dihydropyrimi 25.7 6E+02 0.013 24.4 10.4 43 56-101 151-198 (299)
270 PRK00048 dihydrodipicolinate r 25.5 4.6E+02 0.0099 24.6 8.8 89 72-171 24-116 (257)
271 PRK07379 coproporphyrinogen II 25.4 7.1E+02 0.015 25.1 15.3 55 51-125 76-133 (400)
272 COG5564 Predicted TIM-barrel e 25.3 4.1E+02 0.0089 24.7 7.8 86 130-221 146-235 (276)
273 PRK14042 pyruvate carboxylase 25.2 8.8E+02 0.019 26.1 13.1 170 63-268 64-251 (596)
274 COG0641 AslB Arylsulfatase reg 25.2 3.2E+02 0.0069 27.5 8.0 103 4-109 12-128 (378)
275 PRK09250 fructose-bisphosphate 25.1 6.5E+02 0.014 25.0 9.8 99 130-241 94-193 (348)
276 TIGR01334 modD putative molybd 24.8 1.3E+02 0.0027 29.0 4.8 35 100-138 193-227 (277)
277 TIGR01579 MiaB-like-C MiaB-lik 24.8 7.3E+02 0.016 25.0 11.7 59 167-227 250-312 (414)
278 PRK09454 ugpQ cytoplasmic glyc 24.6 5.7E+02 0.012 23.7 13.1 22 129-150 219-240 (249)
279 cd08567 GDPD_SpGDE_like Glycer 24.5 5.6E+02 0.012 23.6 12.2 29 129-157 220-250 (263)
280 PRK07896 nicotinate-nucleotide 24.4 1.4E+02 0.003 28.9 5.0 123 66-208 126-273 (289)
281 PRK13586 1-(5-phosphoribosyl)- 24.3 5.7E+02 0.012 23.6 14.0 51 120-170 75-130 (232)
282 TIGR00742 yjbN tRNA dihydrouri 24.2 3.1E+02 0.0067 26.8 7.6 48 53-103 103-161 (318)
283 cd00956 Transaldolase_FSA Tran 24.2 5.5E+02 0.012 23.4 13.4 76 34-116 38-123 (211)
284 PF01261 AP_endonuc_2: Xylose 24.2 4.7E+02 0.01 22.7 8.5 96 188-295 70-171 (213)
285 PF04551 GcpE: GcpE protein; 24.1 7.3E+02 0.016 24.8 10.3 78 166-248 98-180 (359)
286 PRK13774 formimidoylglutamase; 23.9 4.5E+02 0.0097 25.5 8.7 102 108-211 172-286 (311)
287 PRK06852 aldolase; Validated 23.9 6.8E+02 0.015 24.4 10.2 106 129-244 61-170 (304)
288 TIGR02082 metH 5-methyltetrahy 23.9 3E+02 0.0066 32.2 8.4 132 29-169 394-550 (1178)
289 PF02126 PTE: Phosphotriestera 23.9 3.4E+02 0.0074 26.4 7.8 60 89-149 147-215 (308)
290 cd04735 OYE_like_4_FMN Old yel 23.7 6E+02 0.013 25.1 9.7 42 160-209 214-255 (353)
291 PF01207 Dus: Dihydrouridine s 23.5 5.9E+02 0.013 24.7 9.4 87 54-142 103-208 (309)
292 TIGR00693 thiE thiamine-phosph 23.4 1.8E+02 0.0039 25.7 5.5 18 99-116 100-117 (196)
293 cd02808 GltS_FMN Glutamate syn 23.4 7E+02 0.015 25.1 10.2 92 56-149 196-316 (392)
294 COG0159 TrpA Tryptophan syntha 23.3 1.9E+02 0.004 27.6 5.6 133 60-206 3-151 (265)
295 PRK01362 putative translaldola 23.3 5.8E+02 0.013 23.4 12.6 76 34-116 38-123 (214)
296 PF01924 HypD: Hydrogenase for 23.1 1.3E+02 0.0028 29.9 4.5 74 97-171 56-134 (355)
297 PF04672 Methyltransf_19: S-ad 23.1 1.9E+02 0.0042 27.6 5.6 35 230-266 57-92 (267)
298 CHL00200 trpA tryptophan synth 23.1 6.5E+02 0.014 23.8 11.9 51 87-139 109-166 (263)
299 TIGR01125 MiaB-like tRNA modif 22.9 8.1E+02 0.018 24.9 12.6 43 182-226 264-308 (430)
300 COG2100 Predicted Fe-S oxidore 22.7 7.6E+02 0.016 24.5 11.7 130 53-200 138-282 (414)
301 COG0800 Eda 2-keto-3-deoxy-6-p 22.7 2.5E+02 0.0055 25.7 6.1 37 80-116 89-127 (211)
302 COG3867 Arabinogalactan endo-1 22.5 7.3E+02 0.016 24.2 18.3 102 181-287 93-220 (403)
303 COG2185 Sbm Methylmalonyl-CoA 22.5 1.8E+02 0.0038 25.0 4.7 40 108-150 33-73 (143)
304 PF12224 Amidoligase_2: Putati 22.2 4.2E+02 0.0091 24.4 7.9 30 188-218 91-125 (252)
305 PF01081 Aldolase: KDPG and KH 22.2 1.7E+02 0.0036 26.6 4.9 145 33-208 20-175 (196)
306 TIGR03471 HpnJ hopanoid biosyn 22.2 8.7E+02 0.019 25.0 14.3 119 105-232 233-365 (472)
307 PRK08508 biotin synthase; Prov 22.1 6.8E+02 0.015 23.7 11.2 15 56-70 40-54 (279)
308 PRK09389 (R)-citramalate synth 22.0 9.2E+02 0.02 25.2 14.7 41 187-229 141-181 (488)
309 cd03332 LMO_FMN L-Lactate 2-mo 21.9 7.3E+02 0.016 25.0 9.8 81 63-147 243-337 (383)
310 cd01572 QPRTase Quinolinate ph 21.9 1.6E+02 0.0035 28.0 5.0 37 98-138 185-221 (268)
311 PRK08629 coproporphyrinogen II 21.9 4.3E+02 0.0093 27.1 8.4 16 239-255 98-113 (433)
312 PRK00278 trpC indole-3-glycero 21.8 4.7E+02 0.01 24.6 8.1 72 86-159 149-233 (260)
313 PRK13585 1-(5-phosphoribosyl)- 21.8 6.2E+02 0.013 23.1 9.9 19 34-55 63-81 (241)
314 cd00331 IGPS Indole-3-glycerol 21.8 5.9E+02 0.013 22.9 14.1 71 87-159 34-117 (217)
315 COG0409 HypD Hydrogenase matur 21.7 5.6E+02 0.012 25.3 8.4 84 88-173 54-143 (364)
316 TIGR01227 hutG formimidoylglut 21.7 7.3E+02 0.016 23.9 11.1 104 107-211 165-282 (307)
317 cd02006 TPP_Gcl Thiamine pyrop 21.6 3.7E+02 0.0079 24.0 7.1 25 102-126 88-112 (202)
318 PRK05692 hydroxymethylglutaryl 21.4 7.3E+02 0.016 23.8 12.1 41 186-228 152-192 (287)
319 COG1902 NemA NADH:flavin oxido 21.3 8.3E+02 0.018 24.4 10.7 40 159-205 214-254 (363)
320 PRK06559 nicotinate-nucleotide 21.3 6.5E+02 0.014 24.3 8.9 37 98-138 200-236 (290)
321 TIGR01212 radical SAM protein, 21.1 5E+02 0.011 25.0 8.4 82 148-232 122-205 (302)
322 PRK14333 (dimethylallyl)adenos 20.9 9.1E+02 0.02 24.7 12.7 61 164-226 264-328 (448)
323 PLN02446 (5-phosphoribosyl)-5- 20.9 7.3E+02 0.016 23.6 16.1 51 119-170 84-143 (262)
324 TIGR02311 HpaI 2,4-dihydroxyhe 20.9 4.6E+02 0.0099 24.6 7.8 85 80-167 16-114 (249)
325 cd02004 TPP_BZL_OCoD_HPCL Thia 20.9 5E+02 0.011 22.3 7.7 67 103-169 80-170 (172)
326 PRK13307 bifunctional formalde 20.9 8.8E+02 0.019 24.5 19.4 47 52-98 200-251 (391)
327 PRK08444 hypothetical protein; 20.7 4.5E+02 0.0097 26.1 8.0 77 54-142 78-163 (353)
328 PRK13111 trpA tryptophan synth 20.7 7.2E+02 0.016 23.4 11.9 10 89-98 109-118 (258)
329 cd08609 GDPD_GDE3 Glycerophosp 20.5 7.2E+02 0.016 24.2 9.3 50 102-155 232-281 (315)
330 TIGR00735 hisF imidazoleglycer 20.5 7E+02 0.015 23.2 12.5 51 120-170 76-131 (254)
331 PRK08207 coproporphyrinogen II 20.4 9.8E+02 0.021 24.9 13.6 74 149-228 269-344 (488)
332 TIGR00612 ispG_gcpE 1-hydroxy- 20.3 7.8E+02 0.017 24.4 9.2 137 90-229 40-191 (346)
333 cd08068 MPN_BRCC36 Mov34/MPN/P 20.2 2.2E+02 0.0047 26.9 5.3 34 182-215 62-102 (244)
334 PRK14326 (dimethylallyl)adenos 20.2 1E+03 0.022 24.9 13.2 114 106-226 193-330 (502)
335 PRK08599 coproporphyrinogen II 20.1 4.6E+02 0.0099 26.1 8.1 43 185-227 132-174 (377)
336 TIGR01496 DHPS dihydropteroate 20.1 7.3E+02 0.016 23.3 10.7 58 87-147 64-125 (257)
337 PRK08508 biotin synthase; Prov 20.1 7.5E+02 0.016 23.4 12.4 41 57-98 73-113 (279)
No 1
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-70 Score=522.71 Aligned_cols=370 Identities=45% Similarity=0.791 Sum_probs=330.1
Q ss_pred HHHHHHHH--Hhhc--CCCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHH
Q 045356 35 LLEFMESI--ILKR--QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110 (419)
Q Consensus 35 ~~~~~~~~--~~~~--~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~ 110 (419)
+..+++++ .+.. .....|||++|+.+|.+++++|++.+|+++++||||+|+++.|++.|.+.|+||+|+|..|+++
T Consensus 36 ~r~~i~e~~~~~~~~~~~e~~aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~l 115 (448)
T KOG0622|consen 36 LRNLIEEGTLVAERMETGEKQAFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDL 115 (448)
T ss_pred HHHHHHHhhhhhhhccccccCceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHH
Confidence 44555544 3332 3457999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHH
Q 045356 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEE 190 (419)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee 190 (419)
++..|++|++|+|.+|+|+.+.|++|++.|+...++||..|+.++.+.+|+++++|||+++.+. +.+....|||++.++
T Consensus 116 vl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~-a~~~l~~KFG~~~~~ 194 (448)
T KOG0622|consen 116 VLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDST-ATCRLNLKFGCSLDN 194 (448)
T ss_pred HHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCCc-ccccccCccCCCHHH
Confidence 9999999999999999999999999999999988999999999999999999999999998753 234456899999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCC----CHHHHHHHH
Q 045356 191 VAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNP----GFHEAASII 266 (419)
Q Consensus 191 ~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~----~~~~~~~~i 266 (419)
+.++++.+++++++++|++||+||.+.+++.|.++++.++.++++..+.| ..+.+||+||||++.. .|+++++.|
T Consensus 195 ~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~G-f~m~~LdiGGGf~g~~~~~~~fe~i~~~I 273 (448)
T KOG0622|consen 195 CRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELG-FEMDILDIGGGFPGDEGHAVVFEEIADVI 273 (448)
T ss_pred HHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcC-ceEEEeecCCCCCCccchhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999 7899999999999843 488999999
Q ss_pred HHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCC------------ceEEEEecCCCCCcchhhh--H
Q 045356 267 KDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDE------------LREYWINDGKYGSFGWLSS--E 332 (419)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------------~~~~~i~dg~~~~~~~~~~--~ 332 (419)
+.+|.+||++- .+++|+|||||+|+.|.+|++.|+++|..+. +..|+++||+|++|++++| +
T Consensus 274 n~ald~~Fp~~----~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~~ 349 (448)
T KOG0622|consen 274 NTALDLYFPSG----GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDHQ 349 (448)
T ss_pred HHHHHHhCCCC----CceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhccc
Confidence 99999999962 3899999999999999999999999998532 2369999999999999998 4
Q ss_pred HHHhhcceeeecccCCCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEEE
Q 045356 333 EVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYV 412 (419)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~~ 412 (419)
+|. +.+.....+ +.+.++..|+||||++.|++.++..||.+.+||||+|.+|||||++++|.||||+.|.+ |+
T Consensus 350 ~~i----~~~~~~~~e-~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~--~y 422 (448)
T KOG0622|consen 350 HPI----PLVVKDPSE-EEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKI--YY 422 (448)
T ss_pred CCc----ccccCCCcc-ccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCce--EE
Confidence 544 322222221 13368899999999999999999999999999999999999999999999999998776 99
Q ss_pred EecCC
Q 045356 413 VRSDP 417 (419)
Q Consensus 413 ~~~~~ 417 (419)
++|..
T Consensus 423 ~~s~~ 427 (448)
T KOG0622|consen 423 VMSDG 427 (448)
T ss_pred Eeccc
Confidence 98864
No 2
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=7e-69 Score=537.27 Aligned_cols=358 Identities=37% Similarity=0.682 Sum_probs=311.0
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
+..+|||+||++.|++|+++|++.+|+++++||+|||+++.|++++.+.|+||||+|.+|++.++++|+++++|+|+||+
T Consensus 10 ~~~~p~yv~d~~~i~~~~~~l~~~lp~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Iif~gp~ 89 (394)
T cd06831 10 TGKNAFFVGDLGKIVKKHSQWQTVMAQIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC 89 (394)
T ss_pred cCCCCeEEEEHHHHHHHHHHHHHHCCCCeEEeeeccCCCHHHHHHHHHcCCCeEeCCHHHHHHHHhcCCCcCCEEEeCCC
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 045356 128 KPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIG 207 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~G 207 (419)
|+.++|+.|+++|+..+++||++||++|.+.+++.++.|||++....+ .....+|||++.+++.++++.+++.++++.|
T Consensus 90 K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~~~~~v~lRi~~~~~~~-~~~~~~KFGi~~~~~~~~l~~~~~~~l~~~G 168 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKLLLHIATEDNIG-GEEMNMKFGTTLKNCRHLLECAKELDVQIVG 168 (394)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCcEEEEEeccCCCC-CCccCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999998789999999999999999899999999874332 2233589999999999999998888999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-CCHHHHHHHHHHHHHhhCCCccCCCccEEE
Q 045356 208 VAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-PGFHEAASIIKDAIQTYFPNETAAGHLSVI 286 (419)
Q Consensus 208 lh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~li 286 (419)
||+|+||++.+.+.|.++++.++.+++.+++.| .++++||+||||+.. ++++++++.|++.+.++++.. ..++|+
T Consensus 169 ih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g-~~l~~ldiGGGf~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~li 244 (394)
T cd06831 169 VKFHVSSSCKEYQTYVHALSDARCVFDMAEEFG-FKMNMLDIGGGFTGSEIQLEEVNHVIRPLLDVYFPEG---SGIQII 244 (394)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEeCCCcCCCCCCHHHHHHHHHHHHHHhcCcC---CCCEEE
Confidence 999999999999999999988888999888899 799999999999874 688999999999999987642 237999
Q ss_pred EcCcchhcccceEEEEEEEEEEEeCC---------------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCC
Q 045356 287 SEPGRFLADTAFTLATKVIGKRVRDE---------------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNN 351 (419)
Q Consensus 287 ~EpGR~lv~~a~~lvt~V~~~k~~~~---------------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
+|||||++++||+|+|+|+++|..++ ..+|++++|+|++++++.+.... ..+.+.... ....
T Consensus 245 ~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~--~~~~~~~~~-~~~~ 321 (394)
T cd06831 245 AEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLN--TTPEVHKKY-KEDE 321 (394)
T ss_pred EeCChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcccCc--ccceeeccC-CCCC
Confidence 99999999999999999999997421 14677889999988877541100 001111111 0112
Q ss_pred CceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEEEE
Q 045356 352 RTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVV 413 (419)
Q Consensus 352 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~~~ 413 (419)
...++.|+||+|++.|++.+++.||++++||+|+|.++|||+.+|+++||++++|.+++|..
T Consensus 322 ~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~~ 383 (394)
T cd06831 322 PLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMS 383 (394)
T ss_pred CceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999998754443
No 3
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-67 Score=519.33 Aligned_cols=349 Identities=33% Similarity=0.527 Sum_probs=299.2
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCCC--CceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLPM--VHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~~--~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
++++||+|+||++.|++|++++++++++ ++++||+|||+++.|+++|.+.|.||||+|.+|++.++++|++|++|+|+
T Consensus 23 ~~~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I~f~ 102 (394)
T COG0019 23 EEFGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERIVFS 102 (394)
T ss_pred hccCCCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHHHHHHHHHcCCChhhEEEC
Confidence 4799999999999999999999999985 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCC--CeEEEEEecCCCC--CCCCCC---CCCCCCCHHHHHHHHHH
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPK--CELLIRIKSPVDG--GARYPL---DSKFGANPEEVAHLLGA 197 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~--~~v~lRv~~~~~~--g~~~~~---~sRfGi~~ee~~~~l~~ 197 (419)
|+.|+.++|++|++.|+..|++||++||+++.+.++. ++|.|||||+.+. +..+.+ .+|||++++++.++++.
T Consensus 103 g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~ 182 (394)
T COG0019 103 GPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLER 182 (394)
T ss_pred CCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhccccCceEEEEECCCCCCccCccccCCccccccCCCHHHHHHHHHH
Confidence 9999999999999999987899999999999999887 7999999998764 223333 49999999998888887
Q ss_pred HHh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeCCCCCCCC-------CHHHHHHHHHH
Q 045356 198 AQA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETA-ARLGMTKMRVLDIGGGFACNP-------GFHEAASIIKD 268 (419)
Q Consensus 198 ~~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~ldiGGG~~~~~-------~~~~~~~~i~~ 268 (419)
+.+ .++.+.|||||+|||..|.+.|.++++++.+++..+ +..| .++++||+|||+++.+ +++.+++.+.+
T Consensus 183 ~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g-~~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l~~ 261 (394)
T COG0019 183 AAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELG-IQLEWLNLGGGLGITYEDEYDPPDLAAYAKALKE 261 (394)
T ss_pred HHhcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCCcCcCCCCCCCCcCHHHHHHHHHH
Confidence 654 699999999999999999999999999999999888 4679 8999999999999842 33456666665
Q ss_pred HHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCC-CCcchhhh--HHHHhhcceeeecc
Q 045356 269 AIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKY-GSFGWLSS--EEVIAKCGAHILAS 345 (419)
Q Consensus 269 ~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~-~~~~~~~~--~~~~~~~~~~~~~~ 345 (419)
.+.++ ...++|++||||+++++||+|+|+|..+|+.++ ++|+++|+.+ ..+.+.+| +++ ..+ .
T Consensus 262 ~~~~~------~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~-~~~v~vD~gm~~~~rpaly~a~~~-----~~~--~ 327 (394)
T COG0019 262 AFGEY------AEDVELILEPGRAIVANAGVLVTEVLDVKENGE-RNFVIVDGGMNDLMRPALYGAYHH-----IRL--N 327 (394)
T ss_pred HHhhc------cCCCeEEEccchhhhhcceeEEEEEEEEEEecC-ceEEEEechhccCcCHHHcCCccc-----ccc--c
Confidence 55554 123899999999999999999999999999754 6788877643 34444555 222 122 1
Q ss_pred cCCCCCCceeeEEeccCCCCCCccccCCCCCC-CCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 346 ASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPE-LEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 346 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~-l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
..........+.|+||+|+++|+|.+++.||. +++||+|+|.++|||+++|+|+||++++|++++
T Consensus 328 ~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~ 393 (394)
T COG0019 328 RTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVL 393 (394)
T ss_pred cccCCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceee
Confidence 21122346889999999999999999999996 559999999999999999999999999999865
No 4
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=3.9e-65 Score=514.01 Aligned_cols=353 Identities=24% Similarity=0.300 Sum_probs=299.7
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----CcEEEcCHHHHHHHHH
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLP----------MVHPYYAVKCNPEPAILETLAALG----SNFDCASPSEIQAVLA 113 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~----------~~~i~~avKan~~~~v~~~l~~~G----~g~~VaS~~E~~~a~~ 113 (419)
+++||+|+||++.|++|+++++++|+ +++++||+|||+++.|++++.+.| +||||+|.+|++.+++
T Consensus 2 ~ygtPlyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~ 81 (409)
T cd06830 2 GYGLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALA 81 (409)
T ss_pred CCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHh
Confidence 68999999999999999999999986 468999999999999999999999 9999999999999999
Q ss_pred CCCCCCcEEEcCCCCCHHHHHHHHHC---CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC-CC---CCCC
Q 045356 114 LSVSPDRIIYANACKPVSHIKYAASV---GVN-LTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGG-AR---YPLD 181 (419)
Q Consensus 114 ~G~~~~~Ii~~gp~k~~~~l~~a~~~---gi~-~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g-~~---~~~~ 181 (419)
+|++++++++.++.|+.++|+.|++. |+. .+++||++||++|.+++ ++.+++|||++..+.+ .. ....
T Consensus 82 ~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~ 161 (409)
T cd06830 82 LLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGGDR 161 (409)
T ss_pred cCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCCCC
Confidence 99988888988888999999999875 443 57999999999999873 4578999999975432 12 2335
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC---
Q 045356 182 SKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN--- 256 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~--- 256 (419)
+|||++.+++.++++.+++. ++++.|||+|+||++.+.+.|.++++++.++++.+++.| .++++||+||||+++
T Consensus 162 sKFGi~~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~iDiGGGf~v~y~~ 240 (409)
T cd06830 162 SKFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLG-ANLRYLDIGGGLGVDYDG 240 (409)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEcCCCcccCCCC
Confidence 99999999999999988874 689999999999999999999999999999999888888 899999999999873
Q ss_pred ----------CCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCc
Q 045356 257 ----------PGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSF 326 (419)
Q Consensus 257 ----------~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~ 326 (419)
++++++++.|.+.+++++.+. +.+.++|++|||||++++||+++|+|+++|..+ ++|+++||+++++
T Consensus 241 ~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~-~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~--~~~~~~dg~~~~~ 317 (409)
T cd06830 241 SRSSSDSSFNYSLEEYANDIVKTVKEICDEA-GVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA--DWYFCNFSLFQSL 317 (409)
T ss_pred CcCcccCCCCCCHHHHHHHHHHHHHHHHHHc-CCCCCEEEEecCHHhhhhceEEEEEeEEEEecC--CEEEEecccccCC
Confidence 267889999999998887532 234579999999999999999999999999855 6899999988776
Q ss_pred chhhh--HHHHhhcceeeecccCCCCCCceeeEEeccCCCCCCccccCCC---------CC--CCCCCCEEEEcCCCccc
Q 045356 327 GWLSS--EEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQ---------LP--ELEVSDWLVFSDMGAYT 393 (419)
Q Consensus 327 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~---------lp--~l~~GD~lv~~~~GAY~ 393 (419)
....+ +... +.++.... .....++.|+||+|+++|++.+++. || ++++||+|+|.++|||+
T Consensus 318 ~~~~~~~~~~~----~~~~~~~~--~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~GAY~ 391 (409)
T cd06830 318 PDSWAIDQLFP----IMPLHRLN--EKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQ 391 (409)
T ss_pred cchHHhCCCce----EEECCCCC--CCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEeccHhh
Confidence 65432 1111 33332211 1245689999999999999998877 44 34799999999999999
Q ss_pred ccCCCCCCCCCCCCccE
Q 045356 394 TACGTNFNGFNTAAIPT 410 (419)
Q Consensus 394 ~~~~~~fng~~~~~~~~ 410 (419)
.+|+++||++++|.+++
T Consensus 392 ~s~ss~fn~~~~p~~v~ 408 (409)
T cd06830 392 EILGDLHNLFGDTNAVH 408 (409)
T ss_pred HHHHhcccCCCCCCEEe
Confidence 99999999999999864
No 5
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=5.7e-64 Score=499.76 Aligned_cols=349 Identities=50% Similarity=0.892 Sum_probs=306.1
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
+||+|+||+++|++|++++++.+++.+++|++|||+++.+++.+.+.|++|+|+|.+|++.++++|+++++|+|+||.|+
T Consensus 1 ~tP~~vid~~~l~~N~~~~~~~~~~~~~~~avKAN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~i~~~~~~k~ 80 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPCKS 80 (362)
T ss_pred CCCEEEEeHHHHHHHHHHHHHHCCCCeEEEEeccCCCHHHHHHHHHcCCCeEecCHHHHHHHHHcCCCcceEEEcCCCCC
Confidence 58999999999999999999999988999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEE
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVA 209 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh 209 (419)
+++++.|+++|+..+++||++|++++.+.+++.++.+||+++.+.+ ....++|||++++++.++++.+++.++++.|+|
T Consensus 81 ~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~~~~v~vri~~~~~~~-~~~~~sRfGi~~~~~~~~~~~~~~~~~~~~Glh 159 (362)
T cd00622 81 ISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIATDDSGA-LCPLSRKFGADPEEARELLRRAKELGLNVVGVS 159 (362)
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHHHHCCCCEEEEEEeeCCCCC-CCcccCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999987678899999999999888889999999876532 223358999999999999988877789999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-----CCHHHHHHHHHHHHHhhCCCccCCCccE
Q 045356 210 FHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-----PGFHEAASIIKDAIQTYFPNETAAGHLS 284 (419)
Q Consensus 210 ~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 284 (419)
+|+||+..+.+.+.++++++.++++.+++.+ ..+.++|+||||+++ ++++++++.+++.+.+|+... .++
T Consensus 160 ~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~~----~~~ 234 (362)
T cd00622 160 FHVGSQCTDPSAYVDAIADAREVFDEAAELG-FKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPDE----GVR 234 (362)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCcCEEEeCCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcC----CCe
Confidence 9999998889999999999999999888888 799999999999985 467899999999999997642 378
Q ss_pred EEEcCcchhcccceEEEEEEEEEEEeCC---ceEEEEecCCCCCcchhhh--HHHHhhcceeeecccCCCCCCceeeEEe
Q 045356 285 VISEPGRFLADTAFTLATKVIGKRVRDE---LREYWINDGKYGSFGWLSS--EEVIAKCGAHILASASHSNNRTYRSTVF 359 (419)
Q Consensus 285 li~EpGR~lv~~a~~lvt~V~~~k~~~~---~~~~~i~dg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 359 (419)
+++||||+++++||+|+|+|+++|..++ .+++++++|+++++.+.++ +++. ..++.... +.....++.|+
T Consensus 235 l~~EpGr~lv~~ag~l~t~V~~vk~~~~~~~~~~~~vd~g~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~v~ 309 (362)
T cd00622 235 IIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYP----PRVLKDGG-RDGELYPSSLW 309 (362)
T ss_pred EEEeCCchhccceEEEEEEEEEEEecCCCCceEEEEEcCCeecchhhhhhccCCce----eEEecCCC-CCCCeeeEEEE
Confidence 9999999999999999999999998653 3577778888877766554 2221 33332221 12356789999
Q ss_pred ccCCCCCCccccCCCCCC-CCCCCEEEEcCCCcccccCCCCCCCCCCCCcc
Q 045356 360 GPTCAAVDKVFTGHQLPE-LEVSDWLVFSDMGAYTTACGTNFNGFNTAAIP 409 (419)
Q Consensus 360 G~~C~~~D~l~~~~~lp~-l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~ 409 (419)
||+|+++|+|.+++.+|+ +++||+|+|.++|||+++|+++||++++|.++
T Consensus 310 G~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 360 (362)
T cd00622 310 GPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIV 360 (362)
T ss_pred cCCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeE
Confidence 999999999999999997 99999999999999999999999999999874
No 6
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=8.3e-64 Score=498.05 Aligned_cols=345 Identities=25% Similarity=0.352 Sum_probs=282.5
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHC--CCCCCcEEEc
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLAL--SVSPDRIIYA 124 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~--G~~~~~Ii~~ 124 (419)
+...||+|+||++.|++|+++|++..+..+++||+|||+++.|++.+.+.|+||||+|.+|++.++++ |+++++|+|+
T Consensus 8 ~~~~tP~~v~d~~~l~~~~~~l~~~~~~~~~~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iif~ 87 (368)
T cd06840 8 APDVGPCYVYDLETVRARARQVSALKAVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFT 87 (368)
T ss_pred CCCCCCEEEecHHHHHHHHHHHHhCCCCCeEEEEeccCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcccCCCcceEEEc
Confidence 46789999999999999999998644556899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCC--CCC---CCCCCCCCHHHHHHHHHHHH
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGA--RYP---LDSKFGANPEEVAHLLGAAQ 199 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~--~~~---~~sRfGi~~ee~~~~l~~~~ 199 (419)
||.|+.++|+.|+++|+. +++||++||+++.+.++..+++|||+++...+. ... ..+|||++.+++.++++.++
T Consensus 88 gp~K~~~~l~~a~~~gv~-i~~Ds~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~~~ 166 (368)
T cd06840 88 PNFAARSEYEQALELGVN-VTVDNLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAK 166 (368)
T ss_pred CCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999995 699999999999999988999999999765331 222 24999999999999998888
Q ss_pred hcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHHHHh
Q 045356 200 ASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDAIQT 272 (419)
Q Consensus 200 ~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~l~~ 272 (419)
+.++++.|+|+|+||+..+.+.|.+.++.+.+ +.+.+ .++++||+||||+++ ++++.+++.+.....
T Consensus 167 ~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~----l~~~~-~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~- 240 (368)
T cd06840 167 KAGIIVIGLHAHSGSGVEDTDHWARHGDYLAS----LARHF-PAVRILNVGGGLGIPEAPGGRPIDLDALDAALAAAKA- 240 (368)
T ss_pred hCCCcEEEEEEECCCCCCCHHHHHHHHHHHHH----HHHhc-CCCCEEEecCcccCCCCCCCCCCCHHHHHHHHHHHHh-
Confidence 88999999999999999899888776654333 33334 579999999999984 356666666654332
Q ss_pred hCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCcchhhh-HHHHhhcceeeecccCCCCC
Q 045356 273 YFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSS-EEVIAKCGAHILASASHSNN 351 (419)
Q Consensus 273 ~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 351 (419)
.+ +.++|++|||||++++||+++++|+++|+.++.+++++++|++..+.+.+| .... ...+... ...
T Consensus 241 ~~------~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~----~~~~~~~--~~~ 308 (368)
T cd06840 241 AH------PQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHE----IVNLSRL--DEP 308 (368)
T ss_pred hC------CCcEEEEecCceeeecceEEEEEEEEEEecCCcEEEEEeCchhcccchhhhcccce----eEecCCC--CcC
Confidence 22 248999999999999999999999999987543445555555433333333 1111 2222111 112
Q ss_pred CceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 352 RTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 352 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
...++.|+||+|++.|++..+..+|++++||+|+|.+||||+++++++||++|+|.+++
T Consensus 309 ~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~ 367 (368)
T cd06840 309 PAGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVV 367 (368)
T ss_pred CcceEEEEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEe
Confidence 34689999999999999999999999999999999999999999999999999999864
No 7
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=3.1e-63 Score=503.34 Aligned_cols=352 Identities=28% Similarity=0.380 Sum_probs=298.9
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCCC--CceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLPM--VHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~~--~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
+++||+|+||+++|++|++.|++.+++ ++++|++|||+++.+++.+.+.|+||+|+|++|++.++++|+++++|+|+|
T Consensus 22 ~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~~~g 101 (417)
T TIGR01048 22 EFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLLAELGSGFDVVSGGELYRALAAGFPPEKIVFNG 101 (417)
T ss_pred hhCCCEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcceEEEeC
Confidence 479999999999999999999999975 899999999999999999999999999999999999999999988999999
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCC--CCCCC---CCCCCCCHHHHHHHHH
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHP----KCELLIRIKSPVDGG--ARYPL---DSKFGANPEEVAHLLG 196 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~----~~~v~lRv~~~~~~g--~~~~~---~sRfGi~~ee~~~~l~ 196 (419)
|.|++++++.|+++|+..+++||++|++++.+.++ +.+++|||+++...+ ...++ .+|||++++++.++++
T Consensus 102 p~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~~~~~~~~~~ 181 (417)
T TIGR01048 102 NGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYL 181 (417)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999997679999999999988753 358999999875432 12222 3899999999999988
Q ss_pred HHHh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHH
Q 045356 197 AAQA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKD 268 (419)
Q Consensus 197 ~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~ 268 (419)
.+++ .++++.|||+|+||+..+.+.+.++++++.++++.+++.+ ..+++||+||||+++ ++++++++.|++
T Consensus 182 ~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g-~~l~~idiGGG~~~~y~~~~~~~~~~~~~~~i~~ 260 (417)
T TIGR01048 182 YALQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEG-IDLEFLDLGGGLGIPYTPEEEPPDPEEYAQAILA 260 (417)
T ss_pred HHHhCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhcC-CCccEEEeCCccccccCCCCCCCCHHHHHHHHHH
Confidence 8776 4799999999999998899999999999999999888888 799999999999873 578899999999
Q ss_pred HHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhh--HHHHhhcceeeecc
Q 045356 269 AIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSS--EEVIAKCGAHILAS 345 (419)
Q Consensus 269 ~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~--~~~~~~~~~~~~~~ 345 (419)
.+.+++.. + ..++|++|||||++++||+++++|+++|..++ ..|++.|+ +.+.+.+.+| ++| ..++..
T Consensus 261 ~~~~~~~~--~-~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~~~~~~-----~~~~~~ 331 (417)
T TIGR01048 261 ALEGYADL--G-LDPKLILEPGRSIVANAGVLLTRVGFVKEVGS-RNFVIVDAGMNDLIRPALYGAYHH-----IIVANR 331 (417)
T ss_pred HHHHHHhc--C-CCcEEEEccCceeeccceEEEEEEEEEEecCC-CEEEEEeCCcccchhhhhccccce-----EEEccC
Confidence 99988641 1 14899999999999999999999999998654 55666554 3322222333 111 222211
Q ss_pred cCCCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEE
Q 045356 346 ASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTY 411 (419)
Q Consensus 346 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~ 411 (419)
. ......++.|+||+|+++|+|.+++.+|++++||+|+|.++|||+++++++||++|.|.++++
T Consensus 332 ~--~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 395 (417)
T TIGR01048 332 T--NDAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLV 395 (417)
T ss_pred C--CCCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeEEEE
Confidence 1 112457899999999999999999999999999999999999999999999999999998655
No 8
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=3.9e-63 Score=495.78 Aligned_cols=351 Identities=27% Similarity=0.390 Sum_probs=300.1
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 49 LDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 49 ~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
++||+|++|++.|++|+++|++.++ +++++|++|||+++.|++.+.+.|.+|+|+|.+|++.++++|+++++|+++||
T Consensus 1 ~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~I~~~~p 80 (373)
T cd06828 1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGN 80 (373)
T ss_pred CCCCEEEEcHHHHHHHHHHHHHhhCCCCcEEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEeCC
Confidence 5799999999999999999999998 79999999999999999999999999999999999999999999889999999
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCC--CCCCC---CCCCCCCHHHHHHHHHH
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHP----KCELLIRIKSPVDGG--ARYPL---DSKFGANPEEVAHLLGA 197 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~----~~~v~lRv~~~~~~g--~~~~~---~sRfGi~~ee~~~~l~~ 197 (419)
.|+.++|+.|+++|+..+++||++|++++.+.++ +.+++|||+++.+.+ ...++ .+|||++++++.++++.
T Consensus 81 ~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~~~~ 160 (373)
T cd06828 81 GKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRR 160 (373)
T ss_pred CCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999965689999999999998764 689999999875532 12222 38999999999999998
Q ss_pred HHh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHH
Q 045356 198 AQA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDA 269 (419)
Q Consensus 198 ~~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~ 269 (419)
++. .++++.|+|+|+||+..+.+.+.++++++.++.+.+++.| .++++||+||||+.+ ++++++++.|.+.
T Consensus 161 ~~~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~~~ 239 (373)
T cd06828 161 AKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELG-IDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEA 239 (373)
T ss_pred HHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Confidence 887 7999999999999998889999999999999999888888 799999999999883 3788999999999
Q ss_pred HHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhh-HHHHhhcceeeecccC
Q 045356 270 IQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSS-EEVIAKCGAHILASAS 347 (419)
Q Consensus 270 l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 347 (419)
+.++++. .+.+++++|||||++++||+++++|+++|..++ ..|++.|+ +++.+.+.++ ..+. ..++...
T Consensus 240 ~~~~~~~---~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~~~~~~----~~~~~~~- 310 (373)
T cd06828 240 LKELCEG---GPDLKLIIEPGRYIVANAGVLLTRVGYVKETGG-KTFVGVDAGMNDLIRPALYGAYHE----IVPVNKP- 310 (373)
T ss_pred HHHHHcc---CCCceEEEecCcceeecceEEEEEEEEEEecCC-CEEEEEeCCcccchhhHhcCCccc----eEEccCC-
Confidence 9999762 234899999999999999999999999998754 45555554 3332222222 1111 2232221
Q ss_pred CCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 348 HSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 348 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
......++.|+||+|++.|+|.++..+|++++||+|+|.+||||+++++++||++++|.+++
T Consensus 311 -~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~ 372 (373)
T cd06828 311 -GEGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVL 372 (373)
T ss_pred -CCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEe
Confidence 11245789999999999999999999999999999999999999999999999999999854
No 9
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=6.8e-63 Score=493.59 Aligned_cols=350 Identities=25% Similarity=0.386 Sum_probs=285.5
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLPM-VHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACK 128 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~~-~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k 128 (419)
..|+|+||++.|++|+++|++++|. ++++||+|||+++.+++++.+.|+||||+|.+|++.++++|+++++|+|+||.|
T Consensus 2 ~~~~~v~d~~~l~~~~~~l~~a~~~~~~~~yAvKaN~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K 81 (379)
T cd06836 2 HPAVGLYDLDGFRALVARLTAAFPAPVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAK 81 (379)
T ss_pred CCEEEEEcHHHHHHHHHHHHHhcCCCcEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCC
Confidence 3589999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCC--C---CCCCCCCCCCHH--HHHHHHH
Q 045356 129 PVSHIKYAASVGVNLTTFDSIQELDKIRKWH-----PKCELLIRIKSPVDGGA--R---YPLDSKFGANPE--EVAHLLG 196 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~-----~~~~v~lRv~~~~~~g~--~---~~~~sRfGi~~e--e~~~~l~ 196 (419)
+.++|+.|+++|+ .+++||++||++|.+++ ++.+++|||+++...+. . ....+|||++++ ++.++++
T Consensus 82 ~~~~L~~ai~~gv-~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~~~~~~~~~~~ 160 (379)
T cd06836 82 TRAELREALELGV-AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEIID 160 (379)
T ss_pred CHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCCCCCCCCcCcchhHHHHHHH
Confidence 9999999999999 47999999999998864 35789999998754321 1 123599999998 4666665
Q ss_pred HHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCCCCC-------CCHHHHHHHHHH
Q 045356 197 AAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAAR-LGMTKMRVLDIGGGFACN-------PGFHEAASIIKD 268 (419)
Q Consensus 197 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~ 268 (419)
.+.. ...+.|||+|+||+..+++.+.+.++.+.++.+.+++ .|..++++||+||||+++ ++++++++.+++
T Consensus 161 ~~~~-~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~v~y~~~~~~~~~~~~~~~i~~ 239 (379)
T cd06836 161 AFAR-RPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA 239 (379)
T ss_pred HHhc-CCCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 4332 3457899999999999999999888888888887765 351379999999999873 478899999999
Q ss_pred HHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhhHHHHhhcceeee--cc
Q 045356 269 AIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSSEEVIAKCGAHIL--AS 345 (419)
Q Consensus 269 ~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~~~~~~~~~~~~~--~~ 345 (419)
.+.+++++ .++|++|||||++++||+|+|+|+++|...+ +.|++.|+ ++....+..+.... +..+. ..
T Consensus 240 ~l~~~~~~-----~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~-~~~~~~d~G~~~~~~~~~~~~~~---~~~~~~~~~ 310 (379)
T cd06836 240 AVPELFDG-----RYQLVTEFGRSLLAKCGTIVSRVEYTKSSGG-RRIAITHAGAQVATRTAYAPDDW---PLRVTVFDA 310 (379)
T ss_pred HHHHHhcc-----CcEEEEecChheeccceEEEEEEEEEEecCC-eEEEEEcCCccccchhhhccccC---ceEEecccc
Confidence 99887753 2899999999999999999999999988643 56766664 33222222221111 01111 11
Q ss_pred cCCC-CCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 346 ASHS-NNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 346 ~~~~-~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
.... .....++.|+||+|+++|++.+++.+|++++||+|+|.+||||+++|+++||++++|+++.
T Consensus 311 ~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~ 376 (379)
T cd06836 311 NGEPKTGPEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYG 376 (379)
T ss_pred cccccCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEE
Confidence 1111 1234689999999999999999999999999999999999999999999999999998843
No 10
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=6e-62 Score=486.40 Aligned_cols=350 Identities=35% Similarity=0.565 Sum_probs=304.4
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
||+|+||+++|++|++++++.++ +++++|++|||+++.|++.+.+.|++|+|+|.+|++.++++|+++++|+|+||.++
T Consensus 1 TP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~i~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~iv~~gp~~~ 80 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPSGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAKS 80 (368)
T ss_pred CCEEEeeHHHHHHHHHHHHHhCCCCCeEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCHHHEEEcCCCCC
Confidence 89999999999999999999998 89999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCC-C---CCCCCCCCCCHHHHHHHHHHHHhc
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGA-R---YPLDSKFGANPEEVAHLLGAAQAS 201 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~-~---~~~~sRfGi~~ee~~~~l~~~~~~ 201 (419)
+++++.++++|+..+++||++|+++|.+.+ ++.+++|||+++...+. . ....+|||++++++.++++.+++.
T Consensus 81 ~~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~~ 160 (368)
T cd06810 81 VSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKEL 160 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHhC
Confidence 999999999995457999999999998765 67899999999764211 1 122389999999999999888776
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-----CCHHHHHHHHHHHHHhhCCC
Q 045356 202 GLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-----PGFHEAASIIKDAIQTYFPN 276 (419)
Q Consensus 202 ~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-----~~~~~~~~~i~~~l~~~~~~ 276 (419)
++++.|+|+|+|++..+.+.+.+.++++.++++.+++.| .++++||+||||+.+ ++++++++.|.+.+.++++.
T Consensus 161 ~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g-~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~ 239 (368)
T cd06810 161 DLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMG-FPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFPN 239 (368)
T ss_pred CCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 699999999999999899999999999999999888888 799999999999885 37789999999999998753
Q ss_pred ccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCcchhh-h-HHHHhhcceeeecccCCCCCCce
Q 045356 277 ETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLS-S-EEVIAKCGAHILASASHSNNRTY 354 (419)
Q Consensus 277 ~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+.+++++||||+++++|++|+|+|+++|..++.+++++++|+++.+.+.+ + +.+. +.++..... .....
T Consensus 240 ---~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~ 311 (368)
T cd06810 240 ---DPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHP----ITPLKAPGP-DEPLV 311 (368)
T ss_pred ---CCCcEEEEecChhhhhhceEEEEEEEEEEecCCcEEEEEeCccccccccccccCCcce----eEEeCCCcc-cCCce
Confidence 234899999999999999999999999998765567777888888776664 2 1211 344433211 12457
Q ss_pred eeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCcc
Q 045356 355 RSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIP 409 (419)
Q Consensus 355 ~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~ 409 (419)
++.|+||+|+++|+|.++..+|++++||+|+|.++|||+++++++||++++|.++
T Consensus 312 ~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 366 (368)
T cd06810 312 PATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEY 366 (368)
T ss_pred eEEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEE
Confidence 8999999999999999999999999999999999999999999999999999884
No 11
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=4e-62 Score=489.01 Aligned_cols=344 Identities=27% Similarity=0.422 Sum_probs=288.9
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhC----CCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEE
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNL----PMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~----~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
+++||+|+||+++|++|++++++.+ ++++++|++|||+++.|++.+.+.|++++|+|.+|++.++++|+++++|+|
T Consensus 4 ~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~dvaS~~E~~~~~~~G~~~~~Ii~ 83 (379)
T cd06841 4 SYGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRIIF 83 (379)
T ss_pred hcCCCeEEEeHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChHHEEE
Confidence 5899999999999999999999887 468999999999999999999999999999999999999999998889999
Q ss_pred cCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 045356 124 ANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQ 199 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~ 199 (419)
+||.|++++|+.|+++|+ .+++||++|++++.+.+ ++.+++|||+++.+.+ ..+|||++++++.++++.++
T Consensus 84 ~g~~k~~~~l~~a~~~g~-~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~~----~~~rfGi~~~e~~~~~~~~~ 158 (379)
T cd06841 84 NGPYKSKEELEKALEEGA-LINIDSFDELERILEIAKELGRVAKVGIRLNMNYGNN----VWSRFGFDIEENGEALAALK 158 (379)
T ss_pred ECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCCC----CCCCCCCchhhhHHHHHHHH
Confidence 999999999999999998 58999999999998764 3478999999864321 25999999988777666554
Q ss_pred h----cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-------------CCHHHH
Q 045356 200 A----SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------------PGFHEA 262 (419)
Q Consensus 200 ~----~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-------------~~~~~~ 262 (419)
. .++++.|+|+|+||+..+++.+.++++++..+++.+ .| .++++||+||||+++ ++++++
T Consensus 159 ~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~ 235 (379)
T cd06841 159 KIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FG-LELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY 235 (379)
T ss_pred HhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh--cC-CCCCEEEeCCCcCcCcCccccccccCCCCCHHHH
Confidence 3 489999999999999989999999998887777666 58 799999999999984 357789
Q ss_pred HHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCcchhhh--HHHHhhcce
Q 045356 263 ASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSS--EEVIAKCGA 340 (419)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~~~~~~--~~~~~~~~~ 340 (419)
++.|...+.++++. ..+.++|++|||||++++||+++|+|+++|..++ +.|++.|+....+... + .+| .
T Consensus 236 ~~~i~~~l~~~~~~--~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~-~~~~~~d~g~~~~~~~-~~~~~~-----~ 306 (379)
T cd06841 236 AEAIASTLKEYYAN--KENKPKLILEPGRALVDDAGYLLGRVVAVKNRYG-RNIAVTDAGINNIPTI-FWYHHP-----I 306 (379)
T ss_pred HHHHHHHHHHHhhc--CCCCCEEEEecCcceeccceEEEEEEEEEEEcCC-cEEEEEeCCcccCcCc-ccCCce-----E
Confidence 99999999998752 2345899999999999999999999999998653 6677777654444332 2 122 2
Q ss_pred eeecccCCCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 341 HILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
.++.... ......++.|+|++|+++|++.+++.+|++++||+|+|.++|||+++++++| ++++|++++
T Consensus 307 ~~~~~~~-~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~ 374 (379)
T cd06841 307 LVLRPGK-EDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYL 374 (379)
T ss_pred EEeccCC-CCCCcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEE
Confidence 2222111 1124578999999999999999999999999999999999999999999999 577877744
No 12
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=1.6e-61 Score=485.61 Aligned_cols=351 Identities=25% Similarity=0.391 Sum_probs=294.2
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLPM-VHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~~-~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
+++||+|+||+++|++|++++++.+++ ++++|++|||+++.|++.+.+.|.||+|+|.+|++.++++|+++++|+++||
T Consensus 4 ~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~yavKan~~~~v~~~l~~~g~g~~vaS~~E~~~~~~~G~~~~~I~~~~~ 83 (382)
T cd06839 4 AYGTPFYVYDRDRVRERYAALRAALPPAIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAGP 83 (382)
T ss_pred ccCCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCHHHEEEeCC
Confidence 689999999999999999999999984 8999999999999999999999999999999999999999998889999999
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCC-C---CCCCCCCCCCHHHHHHHHHHH
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGA-R---YPLDSKFGANPEEVAHLLGAA 198 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~-~---~~~~sRfGi~~ee~~~~l~~~ 198 (419)
.|++++++.+++.|+..++|||++|++++.+.+ ++.+++|||+++...+. . ....+|||++++++.++++.+
T Consensus 84 ~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~~~~~~~~~~ 163 (382)
T cd06839 84 GKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLARI 163 (382)
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccCCCCCCcCCCHHHHHHHHHHH
Confidence 999999999999996558999999999998863 35799999998653211 1 112389999999999999988
Q ss_pred Hh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHH
Q 045356 199 QA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAA-RLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDA 269 (419)
Q Consensus 199 ~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~ 269 (419)
++ .++++.|||+|.||+..+.+.+.++++++.++++.+. +.| .++++||+||||+.+ +++++++..+...
T Consensus 164 ~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~~~ 242 (382)
T cd06839 164 AALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELG-LPLEFLDLGGGFGIPYFPGETPLDLEALGAALAAL 242 (382)
T ss_pred HhCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEecCccccccCCCCCCCCHHHHHHHHHHH
Confidence 87 6899999999999998888888888888888887766 478 799999999999873 3678899999999
Q ss_pred HHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEec-CCCCCcchhh-----h--HHHHhhccee
Q 045356 270 IQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWIND-GKYGSFGWLS-----S--EEVIAKCGAH 341 (419)
Q Consensus 270 l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~d-g~~~~~~~~~-----~--~~~~~~~~~~ 341 (419)
+.++... .++++|++|||||++++||+++|+|+++|+.++ ++|+++| |+++.+...+ + .+| ..
T Consensus 243 l~~~~~~---~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~-~~~~~~D~g~~~~~~~~~~~~~~~~~~~~-----~~ 313 (382)
T cd06839 243 LAELGDR---LPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRG-ETFLVTDGGMHHHLAASGNFGQVLRRNYP-----LA 313 (382)
T ss_pred HHHHhcC---CCCceEEEecChhhhhhceEEEEEEEEEeecCC-CEEEEEECCcccchhhhccccccccccce-----eE
Confidence 9887432 345899999999999999999999999998654 5566555 4544332211 1 111 12
Q ss_pred eecccCCCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCC-CCCCCCCCCCccE
Q 045356 342 ILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACG-TNFNGFNTAAIPT 410 (419)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~-~~fng~~~~~~~~ 410 (419)
+.... ......++.|+||+|+++|+|.++..+|++++||+|+|.+||||+++|+ ++||++|+|.+++
T Consensus 314 ~~~~~--~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~ 381 (382)
T cd06839 314 ILNRM--GGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVL 381 (382)
T ss_pred EccCC--CCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEe
Confidence 22111 1134578999999999999999999999999999999999999999998 5999999999864
No 13
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=2.8e-61 Score=487.34 Aligned_cols=347 Identities=24% Similarity=0.350 Sum_probs=292.1
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
+||+|+||+++|++|++++++.++ +.+++|++|||+++.+++++.+.|++++|+|..|++.++++|+++++|+|+||.
T Consensus 17 ~tP~~v~d~~~l~~N~~~~~~~~~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al~~G~~~~~ii~~g~~ 96 (410)
T PLN02537 17 KRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNG 96 (410)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHhccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCcceEEEECCC
Confidence 799999999999999999999997 456999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC--CCCCC---CCCCCCCHHHHHHHHHHH
Q 045356 128 KPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGG--ARYPL---DSKFGANPEEVAHLLGAA 198 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g--~~~~~---~sRfGi~~ee~~~~l~~~ 198 (419)
|++++++.|+++|+. +++||++|++++.+.+ +..+++|||+++.+.+ ..+.+ ++|||++++++.++++.+
T Consensus 97 k~~~~l~~a~~~gv~-i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~~~~~~~~~ 175 (410)
T PLN02537 97 KLLEDLVLAAQEGVF-VNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 175 (410)
T ss_pred CCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999995 7999999999998754 3568999999875431 12222 389999999999999888
Q ss_pred Hhc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCC--------CHHHHHHHHHH
Q 045356 199 QAS--GLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNP--------GFHEAASIIKD 268 (419)
Q Consensus 199 ~~~--~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~--------~~~~~~~~i~~ 268 (419)
++. ++++.|+|+|+||+..+.+.|.++++.+.++++.+++.| .++++||+||||++++ +++++++.+++
T Consensus 176 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~idiGGGf~v~y~~~~~~~~~~~~~~~~i~~ 254 (410)
T PLN02537 176 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQG-FELSYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRE 254 (410)
T ss_pred HhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHcC-CCccEEEcCCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 764 899999999999998899999999999999999998889 7999999999998742 56777877777
Q ss_pred HHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCc-chhhhHHHHhhcceeeecccC
Q 045356 269 AIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSF-GWLSSEEVIAKCGAHILASAS 347 (419)
Q Consensus 269 ~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (419)
.+.++ + +++++|||||++++||+|+++|+++|..+ ++.|++.||.+..+ .+.+|.... +..++....
T Consensus 255 ~~~~~-----~---~~li~EPGR~lva~ag~lv~~V~~~k~~~-~~~~~~~dgg~~~~~~p~~~~~~~---~~~~~~~~~ 322 (410)
T PLN02537 255 LVLSR-----D---LTLIIEPGRSLIANTCCFVNRVTGVKTNG-TKNFIVIDGSMAELIRPSLYDAYQ---HIELVSPPP 322 (410)
T ss_pred HHHhc-----C---CEEEEccChhhhccceEEEEEEEEEeecC-CcEEEEEeCccccccchHhhcccc---ceeEccCCC
Confidence 77643 2 78999999999999999999999999864 36788888754333 222231000 022222211
Q ss_pred CCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEE
Q 045356 348 HSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTY 411 (419)
Q Consensus 348 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~ 411 (419)
. .....++.|+||+|+++|+|.+++.+|++++||+|+|.++|||+++|+++||++++|.++++
T Consensus 323 ~-~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~ 385 (410)
T PLN02537 323 P-DAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 385 (410)
T ss_pred C-CCCceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEE
Confidence 1 12346789999999999999999999999999999999999999999999999999987554
No 14
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=3e-61 Score=487.06 Aligned_cols=344 Identities=23% Similarity=0.362 Sum_probs=280.1
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCC----CcEEE
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSP----DRIIY 123 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~----~~Ii~ 123 (419)
+++||+|+||++.|++|++++++ ++ +++|++|||+++.|++++.++|+||||+|.+|++.++++|++| ++|+|
T Consensus 23 ~~~tP~~v~d~~~l~~n~~~l~~-~~--~i~yavKan~~~~il~~~~~~G~g~dvaS~~E~~~a~~~G~~~~~~~~~Ii~ 99 (420)
T PRK11165 23 EYGTPLWVYDADIIRRRIAQLRQ-FD--VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAAGYKPGTEPDEIVF 99 (420)
T ss_pred HhCCCEEEEcHHHHHHHHHHHhc-cC--cceEEehhCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCCCCCCCeEEE
Confidence 47999999999999999999986 76 6899999999999999999999999999999999999999988 58999
Q ss_pred cCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCC--CCC---CCCCCCCCHHHHHHHHHHH
Q 045356 124 ANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGA--RYP---LDSKFGANPEEVAHLLGAA 198 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~--~~~---~~sRfGi~~ee~~~~l~~~ 198 (419)
+||.|+.++|++|++.|+ .+++||++||++|.+.+++.+|+|||+++.+.+. ... ..+|||++.+++.++++.+
T Consensus 100 ~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~ 178 (420)
T PRK11165 100 TADVIDRATLARVVELKI-PVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAVI 178 (420)
T ss_pred eCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999998 4799999999999999988999999999754321 112 2489999999998888888
Q ss_pred HhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHH--
Q 045356 199 QASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDA-- 269 (419)
Q Consensus 199 ~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~-- 269 (419)
+..++++.|||+|.||+. +.+.+.+.. ..+.+.+++.| .++++||+||||+++ ++++++++.+...
T Consensus 179 ~~~~l~l~GlH~H~GS~~-~~~~~~~~~---~~l~~~~~~~g-~~~~~IdiGGGf~~~y~~~~~~~d~~~~~~~~~~~~~ 253 (420)
T PRK11165 179 QRYGLKLVGIHMHIGSGV-DYGHLEQVC---GAMVRQVIELG-QDIEAISAGGGLSIPYREGEEPVDTEHYFGLWDAARK 253 (420)
T ss_pred HhCCCcEEEEEEeccCCC-ChHHHHHHH---HHHHHHHHHhC-CCCcEEEeCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 778999999999999986 666655444 44555677788 799999999999873 3567777554443
Q ss_pred -HHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCC-cchhhh--HHHHhhcceeeecc
Q 045356 270 -IQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGS-FGWLSS--EEVIAKCGAHILAS 345 (419)
Q Consensus 270 -l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~-~~~~~~--~~~~~~~~~~~~~~ 345 (419)
+.+.++. +++|++|||||++++||+++|+|+++|..++ +.|++.|+.... +.+.+| +++ ..++..
T Consensus 254 ~~~~~~~~-----~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~-~~~~i~D~G~n~l~~p~~~~~~~~-----~~~~~~ 322 (420)
T PRK11165 254 RIARHLGH-----PVKLEIEPGRFLVAESGVLVAQVRAVKQMGS-RHFVLVDAGFNDLMRPAMYGSYHH-----ISVLAA 322 (420)
T ss_pred HHHhhcCC-----CceEEEccCcceeecceEEEEEEEEEEecCC-cEEEEEeCCcccCchhhhcccccc-----eEEecC
Confidence 3333331 3799999999999999999999999998653 567777764322 122333 121 233332
Q ss_pred cCCC--CCCceeeEEeccCCCCCCccccC-------CCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEE
Q 045356 346 ASHS--NNRTYRSTVFGPTCAAVDKVFTG-------HQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTY 411 (419)
Q Consensus 346 ~~~~--~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~ 411 (419)
.... ....+++.|+||+|+++|+|..+ +.+|++++||+|+|.++|||+++++++||++|+|.++++
T Consensus 323 ~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~v~~ 397 (420)
T PRK11165 323 DGRSLEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLF 397 (420)
T ss_pred CCcccccCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcEEEE
Confidence 1111 11246899999999999999875 789999999999999999999999999999999997654
No 15
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=7.8e-61 Score=482.84 Aligned_cols=356 Identities=24% Similarity=0.364 Sum_probs=288.8
Q ss_pred CCC-CcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 48 ELD-EPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 48 ~~~-tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
+++ ||+|+||++.|++|+++|++.++ +++++|++|||+++++++.+.+.|.+|+|+|.+|++.++++|+++++|+|+|
T Consensus 21 ~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~G~~~~~I~~~g 100 (398)
T TIGR03099 21 RAGGTPFYAYDRGLVSERVAALRKALPEELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAG 100 (398)
T ss_pred HhCCCCEEEEeHHHHHHHHHHHHHhccccCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhHEEEeC
Confidence 467 99999999999999999999997 4899999999999999999999889999999999999999999988899999
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC-CCCCC---CCCCCCCHHHHHHHHHH
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGG-ARYPL---DSKFGANPEEVAHLLGA 197 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g-~~~~~---~sRfGi~~ee~~~~l~~ 197 (419)
|.|+.++|++|+++|+ .+++||++||+++.+.+ +..+++|||++....+ ....+ .+|||++++++.++++.
T Consensus 101 p~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~~~~~~ 179 (398)
T TIGR03099 101 PGKTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVPAALAF 179 (398)
T ss_pred CCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHHHHHHHH
Confidence 9999999999999999 58999999999998764 3578999999865321 11222 39999999999999988
Q ss_pred HHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHH
Q 045356 198 AQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKT-VFETAARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDA 269 (419)
Q Consensus 198 ~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~-l~~~l~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~ 269 (419)
+++.++++.|+|+|.||+..+.+.+.+.+++..+ +.+..++.| .++++||+||||+++ +++++++..+...
T Consensus 180 ~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~idiGGG~~v~~~~~~~~~~~~~~~~~l~~~ 258 (398)
T TIGR03099 180 IKAADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAP-APVRVINIGGGFGIPYFPGNPPLDLAPVGAALAAL 258 (398)
T ss_pred HHhCCCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEeCCcccCCCCCCCCCCCHHHHHHHHHHH
Confidence 8877999999999999998888777665554443 455566678 789999999999872 4667888899988
Q ss_pred HHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhhHHHHhhcceeeecccCC
Q 045356 270 IQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSSEEVIAKCGAHILASASH 348 (419)
Q Consensus 270 l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
+.++++. .+.++|++|||||++++||+++|+|+++|..++ +.|++.|+ +++.+......... +....|+.....
T Consensus 259 ~~~~~~~---~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ 333 (398)
T TIGR03099 259 FARLRDA---LPEVEILLELGRYLVGEAGIYVCRVIDRKISRG-ETFLVTDGGLHHHLSASGNFGQV-IRRNYPVVIGNR 333 (398)
T ss_pred HHHHhhc---CCCCEEEEecChheeccceEEEEEEEEEEecCC-cEEEEEcCCccccccccccccch-hccCceeEEccC
Confidence 8887653 234899999999999999999999999998654 66666665 44322211100000 000122221111
Q ss_pred -CCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCC-CCCCCCCCCCccE
Q 045356 349 -SNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACG-TNFNGFNTAAIPT 410 (419)
Q Consensus 349 -~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~-~~fng~~~~~~~~ 410 (419)
......++.|+||+|+++|+|.+++.+|++++||+|+|.+||||+++|+ ++||++|+|.+++
T Consensus 334 ~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 334 IGGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred CCCCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 1123578999999999999999999999999999999999999999999 6999999999865
No 16
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=1e-60 Score=478.50 Aligned_cols=346 Identities=21% Similarity=0.289 Sum_probs=288.0
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
-|+|+||+++|++|++++++.++ +++++|++|||+++.+++++.+.|.+|+|+|..|++.++++| ++.+|+|+||.|+
T Consensus 2 ~~~yv~d~~~l~~N~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~-~~~~I~~~gp~k~ 80 (377)
T cd06843 2 LCAYVYDLAALRAHARALRASLPPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAV-PDAPLIFGGPGKT 80 (377)
T ss_pred eEEEEEcHHHHHHHHHHHHHhcCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcC-CCCeEEEeCCCCC
Confidence 48999999999999999999997 789999999999999999999888999999999999999998 5688999999999
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCCC---CCCCCCHHHHHHHHHHHHh
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDG--GARYPLD---SKFGANPEEVAHLLGAAQA 200 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~--g~~~~~~---sRfGi~~ee~~~~l~~~~~ 200 (419)
+++++.|+++|+..+++||++|++++.+.+ ++.+++|||+++.+. +....++ +|||++++++.++++.+++
T Consensus 81 ~~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~~ 160 (377)
T cd06843 81 DSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRD 160 (377)
T ss_pred HHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHHh
Confidence 999999999998767899999999998753 457999999997542 1222333 7999999999999988877
Q ss_pred -cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeCCCCCCC-------CCHHHHHHHHHHHHH
Q 045356 201 -SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETA-ARLGMTKMRVLDIGGGFACN-------PGFHEAASIIKDAIQ 271 (419)
Q Consensus 201 -~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~ldiGGG~~~~-------~~~~~~~~~i~~~l~ 271 (419)
.++++.|||+|+||+..+.+.|.+.++.+.++...+ ++.| .++++||+||||+++ ++++++++.+++.+.
T Consensus 161 ~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~ 239 (377)
T cd06843 161 LPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHG-LDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLA 239 (377)
T ss_pred CCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEecCccccccCCCCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999988888876666554 4578 799999999999984 356788999998888
Q ss_pred hhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCc-chhhh--HHHHhhcceeeecccC-
Q 045356 272 TYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSF-GWLSS--EEVIAKCGAHILASAS- 347 (419)
Q Consensus 272 ~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~--~~~~~~~~~~~~~~~~- 347 (419)
++.. .++|++|||||++++||+|+|+|+++|..++ ++|+++||.+..+ .+..+ ++|. ..+....
T Consensus 240 ~~~~------~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~p~~~~~~~~~-----~~~~~~~~ 307 (377)
T cd06843 240 EYEP------GLTLRFECGRYISAYCGYYVTEVLDLKRSHG-EWFAVLRGGTHHFRLPAAWGHNHPF-----SVLPVEEW 307 (377)
T ss_pred hcCC------CCEEEEccChhhhcCceEEEEEEEEEeecCC-cEEEEEeCccccccchHHhcCCCce-----Eecccccc
Confidence 7641 3899999999999999999999999998653 6777777743322 22222 1221 1111110
Q ss_pred -----CCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCC-CCCCCCCCCccE
Q 045356 348 -----HSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGT-NFNGFNTAAIPT 410 (419)
Q Consensus 348 -----~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~-~fng~~~~~~~~ 410 (419)
.+.....++.|+||+|+++|+|.+++.+|++++||+|+|.++|||+++|++ +||++|+|.+++
T Consensus 308 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~ 376 (377)
T cd06843 308 PYPWPRPSVRDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIY 376 (377)
T ss_pred ccccccccCCceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEe
Confidence 111245789999999999999999999999999999999999999999995 999999999854
No 17
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=2.4e-60 Score=469.91 Aligned_cols=331 Identities=19% Similarity=0.194 Sum_probs=264.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNL--PMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACK 128 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~--~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k 128 (419)
||+|+||++.|++|+++|++.+ |+++++||+|||+++.|++.+.++|+||||+|.+|++.++.++ .+ ++++.+|.|
T Consensus 1 tP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~a~~~~-~~-~~i~~~~~k 78 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREEF-GG-EVHTYSPAY 78 (346)
T ss_pred CCeEEeeHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEecCHHHHHHHHHHC-CC-ceEEECCCC
Confidence 8999999999999999999865 6899999999999999999999999999999999999999873 34 444448889
Q ss_pred CHHHHHHHHHCCCcEEEecCHHHHHHHHhHCC--CCeEEEEEecCCCCCC--CC---CCCCCCCCCHHHHHHHHHHHHhc
Q 045356 129 PVSHIKYAASVGVNLTTFDSIQELDKIRKWHP--KCELLIRIKSPVDGGA--RY---PLDSKFGANPEEVAHLLGAAQAS 201 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~--~~~v~lRv~~~~~~g~--~~---~~~sRfGi~~ee~~~~l~~~~~~ 201 (419)
+.++|+.|++.|+ .+++||++||++|.+.++ ..+++|||+++...+. .. ...+|||++++++.+. .
T Consensus 79 ~~~el~~a~~~~~-~~~~Ds~~EL~~l~~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~------~ 151 (346)
T cd06829 79 RDDEIDEILRLAD-HIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEE------D 151 (346)
T ss_pred CHHHHHHHHHcCC-EEEECCHHHHHHHHHHHhccCCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHhhhh------h
Confidence 9999999999887 579999999999999877 7899999999764321 11 2359999999876532 2
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC---CCHHHHHHHHHHHHHhhCCCcc
Q 045356 202 GLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN---PGFHEAASIIKDAIQTYFPNET 278 (419)
Q Consensus 202 ~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~---~~~~~~~~~i~~~l~~~~~~~~ 278 (419)
++++.|||+|.||+. +.+.|.++++.+.+++. +.+ .++++||+||||+++ ++++++++.++..+.++
T Consensus 152 ~~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~---~~~-~~~~~lDiGGGf~v~~~~~~~~~~~~~i~~~~~~~----- 221 (346)
T cd06829 152 LDGIEGLHFHTLCEQ-DFDALERTLEAVEERFG---EYL-PQLKWLNLGGGHHITRPDYDVDRLIALIKRFKEKY----- 221 (346)
T ss_pred hcCceEEEEccCccc-CHHHHHHHHHHHHHHHH---HHH-hcCcEEEcCCCcCCCcCCCCHHHHHHHHHHHHHHh-----
Confidence 478899999999999 89998888777665543 333 478999999999985 47788888887777654
Q ss_pred CCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCCCCCcchhhhHHHHhhcceeeecccC-CCCCCceeeE
Q 045356 279 AAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASAS-HSNNRTYRST 357 (419)
Q Consensus 279 ~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 357 (419)
.++|++|||||++++||+++|+|+++|..+ ++|++.|+ ++++.+... . ..+.+|..... .+.....++.
T Consensus 222 ---~~~li~EPGR~lva~ag~lvt~V~~~K~~~--~~~~~~d~---g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T cd06829 222 ---GVEVYLEPGEAVALNTGYLVATVLDIVENG--MPIAILDA---SATAHMPDV-L-EMPYRPPIRGAGEPGEGAHTYR 291 (346)
T ss_pred ---CCEEEEeCchhhhhcceEEEEEEEEEEEcC--ceEEEEeC---ChhhcCchh-h-ccCCCccccCCCCCCCCceEEE
Confidence 178999999999999999999999999763 56666665 333332100 0 00022222111 1123456899
Q ss_pred EeccCCCCCCccccCCCCC-CCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEE
Q 045356 358 VFGPTCAAVDKVFTGHQLP-ELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTY 411 (419)
Q Consensus 358 i~G~~C~~~D~l~~~~~lp-~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~ 411 (419)
|+||+|+++|+|.. ..+| ++++||+|+|.++|||+++|+++||++++|.+++|
T Consensus 292 v~Gp~C~s~D~l~~-~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 292 LGGNSCLAGDVIGD-YSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred EEcCCCCcccEEee-cccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 99999999999986 4455 79999999999999999999999999999997553
No 18
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=2.6e-60 Score=480.96 Aligned_cols=344 Identities=23% Similarity=0.278 Sum_probs=280.3
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCC----CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEE
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLP----MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~----~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
+++||+|+||+++|++|++++++.++ +.+++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|++
T Consensus 7 ~~~TP~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~~ 86 (423)
T cd06842 7 AYGSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIVA 86 (423)
T ss_pred hhCCCEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCCCEEECCHHHHHHHHHCCCCCCeEEE
Confidence 57999999999999999999999874 57899999999999999999999999999999999999999999889999
Q ss_pred cCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 045356 124 ANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH-----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAA 198 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~-----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~ 198 (419)
+|+.|+.++++.|++.|+. +++||++|++++.+.+ ++.+++|||+++.. ...+|||++.+++.++++.+
T Consensus 87 ~g~~k~~~~i~~a~~~gi~-i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~-----~~~sRfGi~~~e~~~~~~~i 160 (423)
T cd06842 87 TGPAKTDEFLWLAVRHGAT-IAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA-----SLPSRFGMPAAEVRTALERL 160 (423)
T ss_pred ECCCCCHHHHHHHHhCCCE-EEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-----CCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999984 8999999999998754 45799999999642 12499999999999999888
Q ss_pred Hhc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCC-----HHHHHHHHHHHH-
Q 045356 199 QAS--GLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPG-----FHEAASIIKDAI- 270 (419)
Q Consensus 199 ~~~--~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~-----~~~~~~~i~~~l- 270 (419)
++. ++++.|||+|+||+ +.+.+.++++.+.++++.+++.| .++++||+||||++++. ++.++..+++.+
T Consensus 161 ~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~~g-~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~~ 237 (423)
T cd06842 161 AQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALG-LAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALY 237 (423)
T ss_pred HhcCCCCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEeCCCcCCCcCCcHHHHHHHHHhhhhhhh
Confidence 765 89999999999997 67778888888888888888888 79999999999998532 222222322222
Q ss_pred ------------------------------------------------HhhCCCccCCCccEEEEcCcchhcccceEEEE
Q 045356 271 ------------------------------------------------QTYFPNETAAGHLSVISEPGRFLADTAFTLAT 302 (419)
Q Consensus 271 ------------------------------------------------~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt 302 (419)
++.+.+ ..++|++||||+++++||+|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~EpGR~lva~ag~lvt 313 (423)
T cd06842 238 GYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRD----NGITLALEPGRALLDQCGLTVA 313 (423)
T ss_pred ccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHHh----cCCEEEEcCCHHHHhhcCeEEE
Confidence 111111 1379999999999999999999
Q ss_pred EEEEEEEeCCceEEEEecCCCCCcchhhhH-HHHhhcceeeecccCCC---CCCceeeEEeccCCCCCCcccc-CCCCC-
Q 045356 303 KVIGKRVRDELREYWINDGKYGSFGWLSSE-EVIAKCGAHILASASHS---NNRTYRSTVFGPTCAAVDKVFT-GHQLP- 376 (419)
Q Consensus 303 ~V~~~k~~~~~~~~~i~dg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~i~G~~C~~~D~l~~-~~~lp- 376 (419)
+|+++|.++.+++|+++||.++.+.. |. ... +.|+...... .....++.|+||+|+++|+|.+ .+.+|
T Consensus 314 ~V~~vK~~~~~~~~~~~Dgg~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~lp~ 387 (423)
T cd06842 314 RVAFVKQLGDGNHLIGLEGNSFSACE--FSSEFL----VDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFPR 387 (423)
T ss_pred EEEEEeecCCCCeEEEEecCCCcCCc--ccccee----cCceeccCCCCcCCCCCceEEEeCccccchhhhhhhhccCCC
Confidence 99999987445889999986654422 21 111 2222111110 1234678999999999999995 66899
Q ss_pred CCCCCCEEEEcCCCcccccCC-CCCCCCCCCCccE
Q 045356 377 ELEVSDWLVFSDMGAYTTACG-TNFNGFNTAAIPT 410 (419)
Q Consensus 377 ~l~~GD~lv~~~~GAY~~~~~-~~fng~~~~~~~~ 410 (419)
++++||+|+|.+||||+++++ ++||++|+|++++
T Consensus 388 ~~~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~ 422 (423)
T cd06842 388 LPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVV 422 (423)
T ss_pred CCCCCCEEEEecchHHHHHhhhhhhcCCCCCcccc
Confidence 799999999999999999655 7999999999754
No 19
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=2.4e-59 Score=467.36 Aligned_cols=335 Identities=19% Similarity=0.170 Sum_probs=264.9
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 49 LDEPFYVLDLGVVISLYHQLISNL--PMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 49 ~~tP~~v~d~~~l~~ni~~~~~~~--~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
.+||+||||++.|++|+++|++.+ ++++++||+|||+++.+++.+.++|+|+||+|.+|++.++++ ++ ++++++||
T Consensus 1 ~~tP~yvyd~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~D~aS~gEl~~al~a-~~-~~~i~~~~ 78 (380)
T TIGR01047 1 IPTPAFVLEEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGCTASGLWEAKLAKEE-FG-KEIHVYSP 78 (380)
T ss_pred CCCCEEEecHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcccccCHHHHHHHHHH-CC-CcEEEECC
Confidence 379999999999999999998877 478999999999999999999999999999999999999988 76 56777799
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC--CCCC---CCCCCCCCHHHHHHHHHH
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGG--ARYP---LDSKFGANPEEVAHLLGA 197 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g--~~~~---~~sRfGi~~ee~~~~l~~ 197 (419)
.|++++|+.|+++|+ .+++||++||++|.+.+ +..+++||||++.+.+ .... ..||||++++++.+.+
T Consensus 79 ~k~~~el~~a~~~g~-~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~-- 155 (380)
T TIGR01047 79 AYSEEDVPEIIPLAD-HIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHFEESL-- 155 (380)
T ss_pred CCCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHHhHhH--
Confidence 999999999999987 57999999999999865 3458999999976532 1122 2499999999877653
Q ss_pred HHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCC---CHHHHHHHHHHHHHhhC
Q 045356 198 AQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNP---GFHEAASIIKDAIQTYF 274 (419)
Q Consensus 198 ~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~---~~~~~~~~i~~~l~~~~ 274 (419)
.+++.|||+|+||+ .+.+.+.+.++.+.++++ +.. .++++||+||||++++ +++.++..+++.+.++
T Consensus 156 ----~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~---~~~-~~~~~iDiGGGfgv~y~~~~~~~~~~~i~~~~~~~- 225 (380)
T TIGR01047 156 ----LDGINGLHFHTLCE-KDADALERTLEVIEERFG---EYL-PQMDWVNFGGGHHITKPGYDVEKLIAVIKAFAERH- 225 (380)
T ss_pred ----hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHHH---Hhh-CCCCEEEeCCCcCCCCCCCCHHHHHHHHHHHHHHh-
Confidence 25788999999999 888888777776655443 333 4789999999999853 5667666666655432
Q ss_pred CCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhhHHHHhhcceeeecccCC-----
Q 045356 275 PNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSSEEVIAKCGAHILASASH----- 348 (419)
Q Consensus 275 ~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 348 (419)
+ ++|++|||||++++||+++++|+++|+.+ +.|++.|+ ++..+ +..+..+. .+.++.....
T Consensus 226 ----~---~~li~EPGR~lva~ag~lv~~V~~~K~~~--~~~~~vD~g~~~~~-~~~~~~~~---~p~~~~~~~~~~~~~ 292 (380)
T TIGR01047 226 ----G---VQVILEPGEAIGWQTGFLVASVVDIVENE--KKIAILDVSFEAHM-PDTLEMPY---RPSVLGASDPATREN 292 (380)
T ss_pred ----C---CEEEEeCchHHHhcCeeEEEEEEEEEECC--eeEEEEecChHhcC-hhhhccCC---CcccccCCCcccccc
Confidence 2 78999999999999999999999999753 66777665 32222 11110000 0111111100
Q ss_pred ----CCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEE
Q 045356 349 ----SNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTY 411 (419)
Q Consensus 349 ----~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~ 411 (419)
......++.|+||+|+++|+|.++..+|++++||+|+|.++|||+++|+++||++++|.++++
T Consensus 293 ~~~~~~~~~~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~ 359 (380)
T TIGR01047 293 EEISLKEGQFSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCL 359 (380)
T ss_pred ccccccCCceeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEE
Confidence 001345789999999999999987778899999999999999999999999999999988655
No 20
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=3.6e-59 Score=508.14 Aligned_cols=342 Identities=23% Similarity=0.364 Sum_probs=282.4
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHC--CCCCCcEEEcC
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLAL--SVSPDRIIYAN 125 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~--G~~~~~Ii~~g 125 (419)
+.+||+|+||++.|++|+++|++.++..+++|++|||+++.+++++.+.|+||||+|.+|++.++++ |+++++|+|+|
T Consensus 500 ~~~tP~yV~d~~~i~~n~~~l~~~~~~~~i~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Ii~~g 579 (861)
T PRK08961 500 DAGSPCYVYHLPTVRARARALAALAAVDQRFYAIKANPHPAILRTLEEEGFGFECVSIGELRRVFELFPELSPERVLFTP 579 (861)
T ss_pred ccCCCEEEEEHHHHHHHHHHHHhcCCCCcEEEEeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHhcCCCCCCeEEECC
Confidence 4699999999999999999999866777999999999999999999999999999999999999998 99999999999
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCC--CCC---CCCCCCCCCHHHHHHHHHHHHh
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGG--ARY---PLDSKFGANPEEVAHLLGAAQA 200 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g--~~~---~~~sRfGi~~ee~~~~l~~~~~ 200 (419)
|.|+.++|+.|+++|+. +++||++||+++.+.+++.+++|||+++...| ... ...+|||++++++.++++.++.
T Consensus 580 p~K~~~~l~~A~~~gv~-i~vDS~~EL~~i~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~~ 658 (861)
T PRK08961 580 NFAPRAEYEAAFALGVT-VTLDNVEPLRNWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEFVDLAKT 658 (861)
T ss_pred CCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhCCCCcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999995 79999999999999998889999999976532 112 2248999999999999998888
Q ss_pred cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCC-------CHHHHHHHHHHHHHhh
Q 045356 201 SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNP-------GFHEAASIIKDAIQTY 273 (419)
Q Consensus 201 ~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~-------~~~~~~~~i~~~l~~~ 273 (419)
.++++.|+|+|.||+..+.+.|.+..+.+.++ .++ . .++++||+||||++++ +++.+++.+.+.
T Consensus 659 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~l---~~~-~-~~~~~iDiGGGf~v~y~~~~~~~~~~~~~~~i~~~---- 729 (861)
T PRK08961 659 LGITVVGLHAHLGSGIETGEHWRRMADELASF---ARR-F-PDVRTIDLGGGLGIPESAGDEPFDLDALDAGLAEV---- 729 (861)
T ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHHHHH---HHh-c-cCCcEEEecCccCcCCCCCCCCCCHHHHHHHHHHH----
Confidence 89999999999999999998887765544433 333 3 5799999999999843 566666665543
Q ss_pred CCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecC-CCCCcchhhh--HHHHhhcceeeecccCCCC
Q 045356 274 FPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDG-KYGSFGWLSS--EEVIAKCGAHILASASHSN 350 (419)
Q Consensus 274 ~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 350 (419)
+... +.++|++|||||++++||+++|+|+++|..++ ++|++.|+ +...+.+.+| +++ +..+.. ...
T Consensus 730 ~~~~---~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~-~~~~~~d~G~~~l~~p~~~~~~~~-----~~~~~~--~~~ 798 (861)
T PRK08961 730 KAQH---PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDG-VRRVGLETGMNSLIRPALYGAYHE-----IVNLSR--LDE 798 (861)
T ss_pred Hhhc---CCCEEEEccCceeeecceEEEEEEEEEEecCC-ceEEEECCcccccCChhhhccccc-----ceecCC--CCC
Confidence 3221 23899999999999999999999999998754 55665555 3322223333 111 111211 111
Q ss_pred CCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 351 NRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 351 ~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
....++.|+||+|+++|+|.++..+|++++||+|+|.+||||+++|+++||++|+|.+++
T Consensus 799 ~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~ 858 (861)
T PRK08961 799 PAAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVV 858 (861)
T ss_pred CCceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEE
Confidence 245689999999999999999999999999999999999999999999999999999854
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=3.6e-48 Score=402.83 Aligned_cols=369 Identities=24% Similarity=0.328 Sum_probs=297.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----
Q 045356 32 DGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLP----------MVHPYYAVKCNPEPAILETLAALG---- 97 (419)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~----------~~~i~~avKan~~~~v~~~l~~~G---- 97 (419)
.-.+.++++++-.. .++||+|++|++.|++|+++++++|+ +.+++|++|||+++.|++.+.+.|
T Consensus 47 ~i~L~~l~~~~~~~--~~gtPlyV~~~~~L~~ri~~L~~aF~~a~~~~~y~g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~ 124 (634)
T PRK05354 47 SIDLAELVKELRER--GLRLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYRGVYPIKVNQQRRVVEEIVASGKPYN 124 (634)
T ss_pred CcCHHHHHHHhhcc--CCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEeccCChHHHHHHHHHcCCCCc
Confidence 44566777776533 79999999999999999999999875 357999999999999999999999
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHC---CCc-EEEecCHHHHHHHHhHCC----CCeEEEEEe
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASV---GVN-LTTFDSIQELDKIRKWHP----KCELLIRIK 169 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gi~-~i~vdS~~el~~i~~~~~----~~~v~lRv~ 169 (419)
+|+||+|..|+..|+++|++++++++.++.|+.++|+.|+.. |.. .+++||++||+.|.+.++ +..++|||+
T Consensus 125 ~GlEv~S~~EL~~AL~~g~~~~~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~ 204 (634)
T PRK05354 125 LGLEAGSKPELMAVLALAGDPGALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRAR 204 (634)
T ss_pred eeEEECCHHHHHHHHHcCCCCCcEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 899999999999999999998885555558999999998633 443 479999999999988643 568999999
Q ss_pred cCCCC-CCCCCC---CCCCCCCHHHHHHHHHHHHhcC-C-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Q 045356 170 SPVDG-GARYPL---DSKFGANPEEVAHLLGAAQASG-L-AVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTK 243 (419)
Q Consensus 170 ~~~~~-g~~~~~---~sRfGi~~ee~~~~l~~~~~~~-l-~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 243 (419)
+.... |.+..+ .+|||++.+++.++++.+++.+ + ++.|||||+||+..+.+.+.++++.+.+++..+++.| .+
T Consensus 205 ~~~~~~g~~~~tgG~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~~G-~~ 283 (634)
T PRK05354 205 LASQGSGKWQSSGGEKSKFGLSATEVLEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRKLG-AP 283 (634)
T ss_pred cCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 86532 333333 3899999999999999988865 4 6999999999999999999999999999999898889 79
Q ss_pred ceEEEeCCCCCCC-------------CCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEe
Q 045356 244 MRVLDIGGGFACN-------------PGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVR 310 (419)
Q Consensus 244 ~~~ldiGGG~~~~-------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~ 310 (419)
+++||+|||||++ +++++|++.|...+.+++.+. +.++++|++||||++++++++|+++|+++|..
T Consensus 284 l~~LDIGGGlgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~-~v~~p~Ii~EpGRalVA~agvLvt~V~~vK~~ 362 (634)
T PRK05354 284 IQYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEH-GVPHPTIISESGRALTAHHAVLVFNVLGVESQ 362 (634)
T ss_pred CCEEEeCCCcCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEECCCchhhhcceEEEEEEEEEEec
Confidence 9999999999972 368899999999999887654 45678999999999999999999999999974
Q ss_pred CCc-e---------------------------------------------------------------------------
Q 045356 311 DEL-R--------------------------------------------------------------------------- 314 (419)
Q Consensus 311 ~~~-~--------------------------------------------------------------------------- 314 (419)
... .
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~ 442 (634)
T PRK05354 363 EYEEPPAPAEDAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAICRKIQKLLDPK 442 (634)
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 210 0
Q ss_pred ----------------EEEEecCCCCCcchhhhHHHHhh-----cceeeecccCCCCCCceeeEEeccCCCCCCcccc--
Q 045356 315 ----------------EYWINDGKYGSFGWLSSEEVIAK-----CGAHILASASHSNNRTYRSTVFGPTCAAVDKVFT-- 371 (419)
Q Consensus 315 ----------------~~~i~dg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~-- 371 (419)
+|+++=++.. ..|+.| |+..|+.... +.+...+.|.+-||+|.+.+-.
T Consensus 443 ~~~~~~~~~l~~~l~~~y~~NfS~Fq-------slPD~Wai~Q~Fpi~Pi~rl~--e~p~~~~~l~DiTCDSDg~i~~fi 513 (634)
T PRK05354 443 NRHPPELDELQERLADKYYVNFSLFQ-------SLPDAWAIDQLFPIMPLHRLD--EEPTRRAVLADITCDSDGKIDQFI 513 (634)
T ss_pred ccCcHHHHHHHHHhhhheEEeeehhc-------cccchhhhCCccceeeccccC--CCcceeeEEecccccCCCchhccc
Confidence 2222222221 234444 2345554433 2467889999999999987654
Q ss_pred -------CCCCCCCCCCC--EEEEcCCCcccccCCCCCCCCCCCCccEEEE
Q 045356 372 -------GHQLPELEVSD--WLVFSDMGAYTTACGTNFNGFNTAAIPTYVV 413 (419)
Q Consensus 372 -------~~~lp~l~~GD--~lv~~~~GAY~~~~~~~fng~~~~~~~~~~~ 413 (419)
.++||+++.|. +|.|+.+|||+-.++...|-|..|..+..++
T Consensus 514 ~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~~ 564 (634)
T PRK05354 514 DGQGIKTTLPLHELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVRV 564 (634)
T ss_pred CCcCCcCceeCCccCCCCccEEEEEecchhhHhhccccccCCCCCEEEEEE
Confidence 24566888887 8999999999999999999998888665554
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=2.2e-46 Score=389.49 Aligned_cols=367 Identities=24% Similarity=0.362 Sum_probs=291.2
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----Cc
Q 045356 34 GLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLP----------MVHPYYAVKCNPEPAILETLAALG----SN 99 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~----------~~~i~~avKan~~~~v~~~l~~~G----~g 99 (419)
.+.++++++.+. .++||+|++|++.|++|+++++++|+ +.+++|++|||+++.|++.+.+.| +|
T Consensus 42 ~l~~~v~~~~~~--g~~tPl~V~d~~iL~~~i~~l~~aF~~a~~~~~Y~g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~G 119 (624)
T TIGR01273 42 DLLELVDQVRAR--GLQLPLLVRFPDILQHRIRSLNDAFANAIEEYQYAGHYQGVYPIKVNQHRSVVEDIVAFGKGLNYG 119 (624)
T ss_pred CHHHHHHHHHhc--CCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEeccCCcHHHHHHHHHcCCCCceE
Confidence 356777777544 79999999999999999999999885 357999999999999999999999 89
Q ss_pred EEEcCHHHHHHHHHCCCCC-CcEEEcCCCCCHHHHHHHHH---CCCc-EEEecCHHHHHHHHhHCC----CCeEEEEEec
Q 045356 100 FDCASPSEIQAVLALSVSP-DRIIYANACKPVSHIKYAAS---VGVN-LTTFDSIQELDKIRKWHP----KCELLIRIKS 170 (419)
Q Consensus 100 ~~VaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~l~~a~~---~gi~-~i~vdS~~el~~i~~~~~----~~~v~lRv~~ 170 (419)
+||+|..|+..++++|+.+ ..|+++| .|+.++|+.|+. .|.. ++++||++||+.|.+.++ +..++|||++
T Consensus 120 lEv~S~~EL~~Al~~g~~p~~~Ii~NG-~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvnl 198 (624)
T TIGR01273 120 LEAGSKPELLAAMAYATKPGAPIVCNG-YKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARL 198 (624)
T ss_pred EEECCHHHHHHHHHcCCCCCCEEEeCC-CCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 9999999999999999854 4677776 699999999964 3433 479999999999998753 4689999998
Q ss_pred CCCC-CCCCCC---CCCCCCCHHHHHHHHHHHHhcC-C-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 045356 171 PVDG-GARYPL---DSKFGANPEEVAHLLGAAQASG-L-AVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKM 244 (419)
Q Consensus 171 ~~~~-g~~~~~---~sRfGi~~ee~~~~l~~~~~~~-l-~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 244 (419)
.... |.+..+ .+|||++.+++.++++.+++.+ + .+.|||||+||+..+.+.+.++++.+.+++..+++.| .++
T Consensus 199 ~~~~~g~~~~tgg~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~~G-~~l 277 (624)
T TIGR01273 199 ASKGSGKWASSGGEKSKFGLSATQILEVVRLLEQNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRKLG-AKI 277 (624)
T ss_pred CCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCC
Confidence 6432 333322 3899999999999999988765 3 5999999999999999999999999999999999999 799
Q ss_pred eEEEeCCCCCCC-------------CCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeC
Q 045356 245 RVLDIGGGFACN-------------PGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRD 311 (419)
Q Consensus 245 ~~ldiGGG~~~~-------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~ 311 (419)
++||+|||||++ +++++|++.|...+++++.+. +.++++|++||||+++++|++|+|+|+++|...
T Consensus 278 ~~LDIGGGlgV~Y~g~~~~~~~s~~y~leeya~~Iv~~l~~~~~~~-~~~~p~Ii~EpGR~lvA~agvLVt~V~~vK~~~ 356 (624)
T TIGR01273 278 TYVDVGGGLGVDYDGTSSSSDCSVNYGLEEYAADVVQALREICDEK-GVPHPVIITESGRAITAHHAVLITNVLGVERHE 356 (624)
T ss_pred CEEEeCCCcCCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCCchhccceEEEEEEEEEeccC
Confidence 999999999873 468899999999999887654 556789999999999999999999999999732
Q ss_pred Cc--e---------------------------------------------------------------------------
Q 045356 312 EL--R--------------------------------------------------------------------------- 314 (419)
Q Consensus 312 ~~--~--------------------------------------------------------------------------- 314 (419)
.. .
T Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~G~l~l~~ra~~e~l~~~~~~~~~~~~~~~~ 436 (624)
T TIGR01273 357 YDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEILHDAQHLKEEAVEGFKLGYLDLEQRAWAEQLYLSICRKVHQLSAKNK 436 (624)
T ss_pred CCCCCCCcccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 10 0
Q ss_pred ---------------EEEEecCCCCCcchhhhHHHHhh-----cceeeecccCCCCCCceeeEEeccCCCCCCcccc---
Q 045356 315 ---------------EYWINDGKYGSFGWLSSEEVIAK-----CGAHILASASHSNNRTYRSTVFGPTCAAVDKVFT--- 371 (419)
Q Consensus 315 ---------------~~~i~dg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~--- 371 (419)
+|+++=++.. ..|+.| |+..|+.... +.+...+.|.+-||+|.+.+-.
T Consensus 437 ~~~~~~~~l~~~l~~~y~~NfS~fq-------slPD~Wai~Q~Fpi~Pl~rl~--e~p~~~~~l~DiTCDSDg~i~~fi~ 507 (624)
T TIGR01273 437 DHRPILDELQERLADKYFVNFSVFQ-------SLPDAWGIDQLFPIMPLSRLD--EKPTRRAVLQDITCDSDGKIDQFIG 507 (624)
T ss_pred cCchHHHHHHHhhhhheEEehhhhc-------cccchhhhCCccceecCCCCC--CCccceEEEeccCCCCCCchhccCC
Confidence 1111111111 234445 2344444332 2467889999999999985543
Q ss_pred --C----CCCCCCCCC--CEEEEcCCCcccccCCCCCCCCCCCCccEEEEe
Q 045356 372 --G----HQLPELEVS--DWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVR 414 (419)
Q Consensus 372 --~----~~lp~l~~G--D~lv~~~~GAY~~~~~~~fng~~~~~~~~~~~~ 414 (419)
+ ++|+.++.| -+|.|+.+|||+-.++.-.|-|..|..+-.++.
T Consensus 508 ~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~~~ 558 (624)
T TIGR01273 508 EQGITSTLPLHELDPDEGYFLGFFLVGAYQEILGDMHNLFGDTSAVRVVFD 558 (624)
T ss_pred CcCccCCccCCCcCCCCCcEEEEEeccHhHHHhccccccCCCCCEEEEEEC
Confidence 1 345566555 589999999999999999999988887665553
No 23
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=9.2e-43 Score=358.26 Aligned_cols=347 Identities=24% Similarity=0.314 Sum_probs=276.6
Q ss_pred EeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----CcEEEcCHHHHHHHHHCC--CCCC
Q 045356 56 LDLGVVISLYHQLISNLP----------MVHPYYAVKCNPEPAILETLAALG----SNFDCASPSEIQAVLALS--VSPD 119 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~----------~~~i~~avKan~~~~v~~~l~~~G----~g~~VaS~~E~~~a~~~G--~~~~ 119 (419)
=.++.|++|+++++++|+ +.+++|++|||+++.|++.+.+.| +|+||+|..|+..++++| .+++
T Consensus 4 rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~~ 83 (559)
T PLN02439 4 RFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPD 83 (559)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCCC
Confidence 346789999999998774 467899999999999999999988 699999999999999997 5467
Q ss_pred cEEEcCCCCCHHHHHHHHH---CCCc-EEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC-CCCCCC---CCCCCCC
Q 045356 120 RIIYANACKPVSHIKYAAS---VGVN-LTTFDSIQELDKIRKWHP----KCELLIRIKSPVDG-GARYPL---DSKFGAN 187 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~---~gi~-~i~vdS~~el~~i~~~~~----~~~v~lRv~~~~~~-g~~~~~---~sRfGi~ 187 (419)
.++++++.|+.++|+.|+. .|+. .+++||++||+.|.+.++ +..++|||++.... |.+..+ .+|||++
T Consensus 84 ~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~ 163 (559)
T PLN02439 84 AFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLT 163 (559)
T ss_pred eEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCCCC
Confidence 7888877899999998753 3565 469999999999988643 46899999987543 223222 4899999
Q ss_pred HHHHHHHHHHHHhcC-Ce-EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC---------
Q 045356 188 PEEVAHLLGAAQASG-LA-VIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN--------- 256 (419)
Q Consensus 188 ~ee~~~~l~~~~~~~-l~-l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~--------- 256 (419)
.+++.++++.+++.+ +. +.|||+|+||++.+.+.+.++++.+.+++..+++.| .++++||+|||||++
T Consensus 164 ~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G-~~l~~lDIGGGlgV~Y~g~~~~~~ 242 (559)
T PLN02439 164 ATEIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLG-APMRVIDIGGGLGIDYDGSKSGSS 242 (559)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCCcEEEecCCccccCCCcccccc
Confidence 999999999988764 65 999999999999999999999999999999899889 799999999999862
Q ss_pred -----CCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeC--------------------
Q 045356 257 -----PGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRD-------------------- 311 (419)
Q Consensus 257 -----~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~-------------------- 311 (419)
+++++|++.|...+.+++.+. +.++++|++||||++++++++|+++|+++|...
T Consensus 243 ~~s~~ydl~eya~~Vv~~l~~~~~~~-g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (559)
T PLN02439 243 DMSVAYSLEEYANAVVAAVRDVCDRK-GVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLTEELR 321 (559)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHHHHHH
Confidence 467899999999999988654 566789999999999999999999999998300
Q ss_pred -------------------------------------------------------------CceEEEEecCCCCCcchhh
Q 045356 312 -------------------------------------------------------------ELREYWINDGKYGSFGWLS 330 (419)
Q Consensus 312 -------------------------------------------------------------~~~~~~i~dg~~~~~~~~~ 330 (419)
+..+|+++=++..|
T Consensus 322 ~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqs----- 396 (559)
T PLN02439 322 ADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTS----- 396 (559)
T ss_pred hhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhcc-----
Confidence 01134444333322
Q ss_pred hHHHHhh-----cceeeecccCCCCCCceeeEEeccCCCCCCccccC----CCCC--CCCC--C--CEEEEcCCCccccc
Q 045356 331 SEEVIAK-----CGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTG----HQLP--ELEV--S--DWLVFSDMGAYTTA 395 (419)
Q Consensus 331 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~----~~lp--~l~~--G--D~lv~~~~GAY~~~ 395 (419)
.|+.| |+..|+.... +.+...+.|.+-||+|.+.+-.. .+|| +++. | -+|.|+.+|||+-.
T Consensus 397 --lPD~Wai~Q~Fpi~Pl~rl~--e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GAYQe~ 472 (559)
T PLN02439 397 --IPDFWAIGQLFPIVPLHRLD--ERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGAYQEA 472 (559)
T ss_pred --CccceeeCceeeeeeccccC--CCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccHhHHH
Confidence 34444 2345554443 24678999999999999986642 2355 6555 4 46789999999999
Q ss_pred CCCCCCCCCCCCccEEEE
Q 045356 396 CGTNFNGFNTAAIPTYVV 413 (419)
Q Consensus 396 ~~~~fng~~~~~~~~~~~ 413 (419)
++.-.|-|..|..+-.+.
T Consensus 473 lg~~HnLfg~~~~v~v~~ 490 (559)
T PLN02439 473 LGSLHNLFGGPSVVRVSQ 490 (559)
T ss_pred hccccccCCCCCEEEEEE
Confidence 999999999988766544
No 24
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=9.8e-43 Score=329.83 Aligned_cols=237 Identities=35% Similarity=0.607 Sum_probs=201.2
Q ss_pred eHHHHHHHHHHHH-HhCCC-CceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHH
Q 045356 57 DLGVVISLYHQLI-SNLPM-VHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIK 134 (419)
Q Consensus 57 d~~~l~~ni~~~~-~~~~~-~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~ 134 (419)
|++.+.++++++. +..|. ++++|++|||+++.|++.+.+.|+|+||+|.+|++.++++|+++++|+|+||.|+.++|+
T Consensus 1 d~~~~~~~~~~~~~~~~~~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~ 80 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLPYNVKIFYAVKANPNPAVLKILAEEGCGFDVASPGELELALKAGFPPDRIIFTGPGKSDEELE 80 (251)
T ss_dssp EHHHHHHHHHHHHHHHTTT-EEEEEEGGGS--HHHHHHHHHTTCEEEESSHHHHHHHHHTTTTGGGEEEECSS--HHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEECcCCCHHHHHHHHHcCCceEEecccchHHHHhhhccccceeEecCcccHHHHH
Confidence 6777777766655 45575 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCC--CCCCC---CCCCCCCHHH-HHHHHHHHHhcCCeEEEE
Q 045356 135 YAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGG--ARYPL---DSKFGANPEE-VAHLLGAAQASGLAVIGV 208 (419)
Q Consensus 135 ~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g--~~~~~---~sRfGi~~ee-~~~~l~~~~~~~l~l~Gl 208 (419)
.|++.|+..+++||++|++++.+.+++.+++|||++..+.+ ....+ .||||+++++ +.++++.++..++++.||
T Consensus 81 ~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~~~~~~~l~l~Gl 160 (251)
T PF02784_consen 81 EAIENGVATINVDSLEELERLAELAPEARVGLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALERAKELGLRLVGL 160 (251)
T ss_dssp HHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHHHHHHTTEEEEEE
T ss_pred HHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHHhhccceEEEEEe
Confidence 99997777789999999999999988889999999984432 22333 3899999999 999999998888999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCc-ceEEEeCCCCCCCC----CHHHHHHHHHHHHHhhCCCccCCCc
Q 045356 209 AFHIGSEATNLDAFHAAIAEAKTVFETAA-RLGMTK-MRVLDIGGGFACNP----GFHEAASIIKDAIQTYFPNETAAGH 282 (419)
Q Consensus 209 h~H~gs~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~-~~~ldiGGG~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~ 282 (419)
|+|+||+..+.+.|.+.++.+.++++.+. ++| .+ +++||+||||++++ +++.+++.+++.+++++.. +.+.
T Consensus 161 H~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~l~~idiGGG~~~~y~~~~~~~~~~~~i~~~~~~~~~~--~~~~ 237 (251)
T PF02784_consen 161 HFHVGSQILDAEAFRQAIERLLDLAEELKEELG-FEDLEFIDIGGGFGVPYDDEYDLEEYAEVIREALKEYFEE--GLPG 237 (251)
T ss_dssp EE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTT-TTT-SEEEEESSB-SSSSSSSCHHHHHHHHHHHHHHHHCH--TCTT
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHhhhccccc-cccccEEEeeCCCCCCCcccccchhHHHHHHHHHHHHHhc--cCCC
Confidence 99999999999999999999999998887 788 67 99999999999953 4788999999999998774 2456
Q ss_pred cEEEEcCcchhccc
Q 045356 283 LSVISEPGRFLADT 296 (419)
Q Consensus 283 ~~li~EpGR~lv~~ 296 (419)
++|++|||||++++
T Consensus 238 ~~l~~EpGR~lva~ 251 (251)
T PF02784_consen 238 PKLIIEPGRYLVAN 251 (251)
T ss_dssp SEEEEEESHHHHGG
T ss_pred CEEEEeeCHHHhCC
Confidence 99999999999975
No 25
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=9.6e-35 Score=290.04 Aligned_cols=312 Identities=15% Similarity=0.171 Sum_probs=242.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 52 PFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
.++++|+++|++|++.+++.++ +++++|++|||+ .+.+++.+.+.|+ +|+|+|++|+..++++|+++ ++++.+
T Consensus 2 ~~l~Id~~~i~~N~~~l~~~~~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~-~i~~~~ 80 (367)
T cd00430 2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITA-PILVLG 80 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-CEEEEe
Confidence 4689999999999999999987 789999999998 4899999999998 89999999999999999975 455555
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA- 200 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~- 200 (419)
+. ..++++.++++++ .+++||+++++.+.+.+ ...+++|||+++ .+|||++++++.++++.+.+
T Consensus 81 ~~-~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG---------~~R~G~~~~e~~~~~~~i~~~ 149 (367)
T cd00430 81 GT-PPEEAEEAIEYDL-TPTVSSLEQAEALSAAAARLGKTLKVHLKIDTG---------MGRLGFRPEEAEELLEALKAL 149 (367)
T ss_pred CC-CHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEEcCC---------CCCCCCCHHHHHHHHHHHHhC
Confidence 54 4799999999988 47999999999998764 346788888874 39999999999999988876
Q ss_pred cCCeEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccC
Q 045356 201 SGLAVIGVAFHIGSEATN-LDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETA 279 (419)
Q Consensus 201 ~~l~l~Glh~H~gs~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~ 279 (419)
.++++.|||+|++++..+ .+...++++++.++.+.+++.| .++.++|+||+.+.....+...+.++.+...|....
T Consensus 150 ~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g-~~~~~v~~g~s~~~~~~~~~~~d~vR~G~~lyG~~~-- 226 (367)
T cd00430 150 PGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAG-IPPPLKHLANSAAILRFPEAHFDMVRPGIALYGLYP-- 226 (367)
T ss_pred CCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcC-CCCCcEEccCCHHHhCCccccCCeEeeCeEEECcCC--
Confidence 689999999999998655 4667788999999888888778 788899999998863211222234454444443211
Q ss_pred CCccEEEEcCcchhcccceEEEEEEEEEEEeC------CceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCc
Q 045356 280 AGHLSVISEPGRFLADTAFTLATKVIGKRVRD------ELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRT 353 (419)
Q Consensus 280 ~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
.... +......+++.++++|+++|... -+..|....++..++.+++|++.. ++-+..........
T Consensus 227 --~~~~---~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg~~~~~~~~~~~a~~~~Gy~dg~----~~~~~~~~~v~i~~ 297 (367)
T cd00430 227 --SPEV---KSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGY----PRALSNKGEVLIRG 297 (367)
T ss_pred --Cccc---ccccCCceeeEEEEEEEEEEEcCCCCcCCCCCeEEcCCCcEEEEEeeccccCc----CcccCCCcEEEECC
Confidence 0110 12245789999999999999842 146777666677777788885543 33333222222357
Q ss_pred eeeEEeccCCCCCCccccCC-CCCCCCCCCEEEEcCC
Q 045356 354 YRSTVFGPTCAAVDKVFTGH-QLPELEVSDWLVFSDM 389 (419)
Q Consensus 354 ~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~lv~~~~ 389 (419)
++++|+|++|| |+++.++ .+|++++||.++|.+.
T Consensus 298 ~~~~ivG~v~m--D~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 298 KRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred EEcceeceeec--cEEEEECCCCCCCCCCCEEEEEcC
Confidence 89999999997 9999998 5789999999999976
No 26
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=1.4e-32 Score=274.29 Aligned_cols=313 Identities=14% Similarity=0.160 Sum_probs=238.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 52 PFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
.+++||+++|++|++.+++.++ +.+++|++|||+ ++.+++.+.+.|+ +|+|+|++|+..++++|++.+ |++.+
T Consensus 3 ~~~~Idl~~l~~N~~~i~~~~~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~-ilvl~ 81 (367)
T TIGR00492 3 ATVEIDLAALKHNLSAIRNHIGPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAP-ILLLG 81 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhcCCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCC-EEEEe
Confidence 4689999999999999999886 578999999998 4899999999997 999999999999999999764 55555
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA- 200 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~- 200 (419)
+.. +++++.++++++ .+++||+++++.+.+.+ +..+|+|||+++ .+|||++++++.++++.+.+
T Consensus 82 ~~~-~~~~~~~~~~~l-~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtG---------m~R~Gi~~~e~~~~~~~i~~~ 150 (367)
T TIGR00492 82 GFF-AEDLKILAAWDL-TTTVHSVEQLQALEEALLKEPKRLKVHLKIDTG---------MNRLGVKPDEAALFVQKLRQL 150 (367)
T ss_pred CCC-HHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEeeCC---------CCCCCCChHHHHHHHHHHHhC
Confidence 543 789999999998 47999999999998754 346788888875 39999999988888877765
Q ss_pred cCCe-EEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 045356 201 SGLA-VIGVAFHIGSEAT-NLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNET 278 (419)
Q Consensus 201 ~~l~-l~Glh~H~gs~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~ 278 (419)
++++ +.|+|+|++++.. +.+.+.++++++.++.+.+++.| .++.++++|+.-+.....+...+++|.++..|... +
T Consensus 151 ~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g-~~~~~~~~~nS~~~~~~~~~~~d~vR~G~~lyG~~-~ 228 (367)
T TIGR00492 151 KKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQN-IEPPFRHIANSAAILNWPESHFDMVRPGIILYGLY-P 228 (367)
T ss_pred CCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC-CCCCcEEccCCHHHhCCccccCCeEccCeEEECCC-c
Confidence 5899 9999999998753 33567788999999888888777 67778876554332100111234556555444221 0
Q ss_pred CCCccEEEEcCc-chhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCC
Q 045356 279 AAGHLSVISEPG-RFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNN 351 (419)
Q Consensus 279 ~~~~~~li~EpG-R~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
. ... ..+ ..-..|++.+.++|+.+|.... +..|.....+..++.+++|++.. ++.+.++.....
T Consensus 229 ~---~~~--~~~~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~~GYaDG~----~r~~s~~~~v~i 299 (367)
T TIGR00492 229 S---ADM--SDGAPFGLKPVLSLTSKIIQVRTVKKGEPVSYGGTFTAEEDTRIGVVAIGYADGY----PRALSNGTPVLV 299 (367)
T ss_pred C---ccc--ccccCCCCeeeEEEEEEEEEEEEcCCcCCcCCCCcEEcCCCcEEEEEeeecccCc----CcccCCCcEEEE
Confidence 0 000 001 1247899999999999998522 45677777777778888886665 555544333334
Q ss_pred CceeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 352 RTYRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 352 ~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
.+++++|+|+.|| |+++.+++ .|++++||.+++.+.
T Consensus 300 ~g~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 336 (367)
T TIGR00492 300 NGKRVPIVGRVCM--DMIMVDLGPDLQDKTGDEVILWGE 336 (367)
T ss_pred CCEEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 6789999999999 99999885 678999999999874
No 27
>PRK00053 alr alanine racemase; Reviewed
Probab=100.00 E-value=2.1e-31 Score=265.42 Aligned_cols=313 Identities=15% Similarity=0.132 Sum_probs=240.5
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
.++++||+++|++|++.+++.++ +++++|++|||+ .+.+++++.+.|+ +|+|+|++|+..++++|++ .+|++.
T Consensus 3 ~~~l~Idl~~l~~N~~~i~~~~~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~-~~il~l 81 (363)
T PRK00053 3 PATAEIDLDALRHNLRQIRKHAPPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGIT-APILIL 81 (363)
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCC-CCEEEE
Confidence 47899999999999999999887 589999999988 4899999999998 9999999999999999996 468777
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhH--CCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-c
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSIQELDKIRKW--HPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-S 201 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~--~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~ 201 (419)
++....++++.++++++. +++||+++++.+++. .+..+++|||+++ .+|||+.++++.++++.++. +
T Consensus 82 ~~~~~~~e~~~~~~~~i~-~~v~s~~~l~~l~~~~~~~~~~V~l~vdtG---------~~R~Gi~~~e~~~~~~~i~~~~ 151 (363)
T PRK00053 82 GGFFPAEDLPLIIAYNLT-TAVHSLEQLEALEKAELGKPLKVHLKIDTG---------MHRLGVRPEEAEAALERLLACP 151 (363)
T ss_pred eCCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHhccCCCeEEEEEecCC---------CCcCCCCHHHHHHHHHHHHhCC
Confidence 776678899999999884 799999999999874 3346788888875 38999999999999988876 6
Q ss_pred CCeEEEEEEeeCCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCC
Q 045356 202 GLAVIGVAFHIGSEA-TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAA 280 (419)
Q Consensus 202 ~l~l~Glh~H~gs~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 280 (419)
++++.|||+|++++. .+.+...+|+++|.++.+.+++.| . .++++|+.-+.....+..++++|.++..|.... .
T Consensus 152 ~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g-~--~~~h~~nS~~~~~~~~~~~d~vRpG~~lyG~~p-~- 226 (363)
T PRK00053 152 NVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKG-K--PLRHLANSAAILRWPDLHFDWVRPGIALYGLSP-S- 226 (363)
T ss_pred CCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcC-C--ceEeccCCHHHhCCCcccCceEccCeeeeCCCC-C-
Confidence 899999999999875 344566788889988888887767 4 467766654431101122355676666654321 0
Q ss_pred CccEEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCce
Q 045356 281 GHLSVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTY 354 (419)
Q Consensus 281 ~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
... .....-..|++.+.++|+.+|.... +..|.....+..++.+++|.+.. ++-+.++......++
T Consensus 227 --~~~--~~~~~~l~pa~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGy~DG~----~r~~s~~~~v~i~g~ 298 (363)
T PRK00053 227 --GEP--LGLDFGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGY----PRNLPSGTPVLVNGR 298 (363)
T ss_pred --ccc--cccccCCeeeEEEEEEEEEEEEcCCcCccCcCCeEEcCCCcEEEEEEecccccc----ccccCCCCEEEECCE
Confidence 000 0111247899999999999998532 45677766677777888886655 444433333334678
Q ss_pred eeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 355 RSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 355 ~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
+++++|+.|| |+++.+++ .|++++||.+.+.+.
T Consensus 299 ~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 332 (363)
T PRK00053 299 RVPIVGRVSM--DQLTVDLGPDPQDKVGDEVTLWGE 332 (363)
T ss_pred Eceeeceeec--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 9999999999 99998885 678999999999875
No 28
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.97 E-value=2.2e-30 Score=257.88 Aligned_cols=305 Identities=13% Similarity=0.096 Sum_probs=229.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCc----HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 52 PFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPE----PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~----~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
.+.++|+++|++|++.+++.++ +.++++++|||++ .++++.+.+.|+ +|+|+|++|+..++++|+++..+++ +
T Consensus 2 ~~l~Idl~al~~N~~~i~~~~~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ilvl-~ 80 (365)
T cd06826 2 AWLEISTGAFENNIKLLKKLLGGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRV-R 80 (365)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCEEEE-e
Confidence 4788999999999999999887 6899999999985 669999999987 9999999999999999998654444 4
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCCCCCHHH--HHHHHHHH
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKS-PVDGGARYPLDSKFGANPEE--VAHLLGAA 198 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~-~~~~g~~~~~~sRfGi~~ee--~~~~l~~~ 198 (419)
+ +++++++.++++++. ++++|+++++.+.+.+ +..+++|||++ + .+|||+.+++ +.+++..+
T Consensus 81 ~-~~~~e~~~~i~~~i~-~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~G---------m~R~Gi~~~~~~~~~~~~~~ 149 (365)
T cd06826 81 T-ATPSEIEDALAYNIE-ELIGSLDQAEQIDSLAKRHGKTLPVHLALNSGG---------MSRNGLELSTAQGKEDAVAI 149 (365)
T ss_pred C-CCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC---------CCCCCCCcchhhHHHHHHHH
Confidence 3 578999999999986 7999999999987653 45678888887 4 3999999753 45566555
Q ss_pred Hh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCc--ceEEEeCCCCCCCCCHHHHHHHHHHHHHhhC
Q 045356 199 QA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETA-ARLGMTK--MRVLDIGGGFACNPGFHEAASIIKDAIQTYF 274 (419)
Q Consensus 199 ~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~--~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~ 274 (419)
.+ .++++.|+++|+++++.. ...+|+++|.++++.+ ++.| .. ..+++++...+.-...+...+++|.++..|.
T Consensus 150 ~~~~~l~l~Gi~tH~a~ad~~--~~~~q~~~f~~~~~~~~~~~g-~~~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~lyG 226 (365)
T cd06826 150 ATLPNLKIVGIMTHFPVEDED--DVRAKLARFNEDTAWLISNAK-LKREKITLHAANSFATLNVPEAHLDMVRPGGILYG 226 (365)
T ss_pred HHCCCCcEEEEEEeCCCCCch--HHHHHHHHHHHHHHHHHHhcC-CCCCcCeEEeeCCHHHhcCccccCCcCccCeeeeC
Confidence 54 689999999999987542 3457788888877665 4445 33 2356666554431000112355676665553
Q ss_pred CCccCCCccEEEEcCcchhcccceEEEEEEEEEEEe--CC----ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCC
Q 045356 275 PNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVR--DE----LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASH 348 (419)
Q Consensus 275 ~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~--~~----~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
.. |...-..|++.+.++|+.+|.. |+ +..|.....++.++.+++|++.. ++.+.++..
T Consensus 227 ~~------------p~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~----~r~ls~~~~ 290 (365)
T cd06826 227 DT------------PPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGY----RRSFSNKAH 290 (365)
T ss_pred CC------------CCccCceeeEEEEEEEEEEEEcCCcCcccCCCeEEcCCCcEEEEEeeecccCc----CccCCCCcE
Confidence 21 1113478999999999999984 21 45676666667777888887765 555554443
Q ss_pred CCCCceeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 349 SNNRTYRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 349 ~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
....+++++++|+.|| |+++.+++ .|++++||.+++.+.
T Consensus 291 v~i~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 330 (365)
T cd06826 291 VLINGQRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred EEECCEEeeeeceeee--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 3456889999999999 99999885 578899999998865
No 29
>PRK13340 alanine racemase; Reviewed
Probab=99.97 E-value=2.7e-30 Score=260.57 Aligned_cols=307 Identities=12% Similarity=0.106 Sum_probs=227.3
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCc----HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 51 EPFYVLDLGVVISLYHQLISNLPM-VHPYYAVKCNPE----PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~~-~~i~~avKan~~----~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
.++++||+++|++|++.+++.+++ .+++|++|||++ .+|++.+.+.|+ +|+|+|++|+..++++|+++..+++.
T Consensus 40 ~~~l~Idl~ai~~N~~~i~~~~~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ilvl~ 119 (406)
T PRK13340 40 NAWLEISPGAFRHNIKTLRSLLANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQLLRVR 119 (406)
T ss_pred ceEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCEEEEC
Confidence 378899999999999999999874 789999999984 678999999998 99999999999999999987666665
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCCCCCHHHHHHHHH--H
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKS-PVDGGARYPLDSKFGANPEEVAHLLG--A 197 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~-~~~~g~~~~~~sRfGi~~ee~~~~l~--~ 197 (419)
++ ++++++.++++++. +++||+++++.+++.+ +..+++|||++ + .+|+|+.+++..++.. .
T Consensus 120 ~~--~~~el~~~~~~~l~-~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~G---------m~R~G~~~~e~~~~~~~~~ 187 (406)
T PRK13340 120 SA--SPAEIEQALRYDLE-ELIGDDEQAKLLAAIAKKNGKPIDIHLALNSGG---------MSRNGLDMSTARGKWEALR 187 (406)
T ss_pred CC--CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC---------CCCcCCChhhhhHHHHHHH
Confidence 54 78999999999985 7999999999997753 34678888887 4 3899999865433332 4
Q ss_pred HHh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCcce--EEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 045356 198 AQA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAA-RLGMTKMR--VLDIGGGFACNPGFHEAASIIKDAIQTY 273 (419)
Q Consensus 198 ~~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~--~ldiGGG~~~~~~~~~~~~~i~~~l~~~ 273 (419)
+.+ .++++.|+|+|+++.+. ....+|+++|.++.+.+. +.+ ..+. .+++++..+.-...+...+++|.++.-|
T Consensus 188 l~~~~~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~l~~~~g-~~~~~~~~h~anSa~~~~~~~~~~d~vR~G~~ly 264 (406)
T PRK13340 188 IATLPSLGIVGIMTHFPNEDE--DEVRWKLAQFKEQTAWLIGEAG-LKREKITLHVANSYATLNVPEAHLDMVRPGGILY 264 (406)
T ss_pred HHhCCCccEEEEEEECCCCCc--HHHHHHHHHHHHHHHHHHHhcC-CCCCcCeEEecCCHHHHcCchhcCCeEeeCeeee
Confidence 444 68999999999997543 345678888887777654 445 4433 4454444332100011224455554444
Q ss_pred CCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccC
Q 045356 274 FPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASAS 347 (419)
Q Consensus 274 ~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (419)
... .|...-..|++.+.++|+.+|.... +..|.....++.+..+++|++.. ++.+.+..
T Consensus 265 G~~-----------~p~~~~l~pv~~l~a~Vi~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~----~r~ls~~~ 329 (406)
T PRK13340 265 GDR-----------HPANTEYKRIMTFKSRIASVNTLPKGSTVGYDRTFTLKRDSRLANLPVGYSDGY----PRHASNKA 329 (406)
T ss_pred CCC-----------CCCCCCCcccEEEEEEEEEEEEcCCcCccCCCCeEEcCCCcEEEEEeeecccCc----CccCCCCc
Confidence 220 1222347899999999999998532 45677766677778888886665 55554433
Q ss_pred CCCCCceeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 348 HSNNRTYRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 348 ~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
.....+++++|+|+.|| |+++.+++ .|++++||.+++.+.
T Consensus 330 ~v~i~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 370 (406)
T PRK13340 330 PVLINGQRAPVVGRVSM--NTLMVDVTDIPNVKPGDEVVLFGK 370 (406)
T ss_pred EEEECCEEeeeeeeeec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 33357789999999999 99999885 578899999999876
No 30
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.97 E-value=2.5e-30 Score=255.85 Aligned_cols=307 Identities=15% Similarity=0.103 Sum_probs=228.9
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 52 PFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNP----EPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~----~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
.+.+||+++|++|++.+++.+++.+++|++|||+ ++++++.+.+ ..+|+|+|++|+..++++|++++.+++.++.
T Consensus 2 ~~~~Idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~ilvl~~~~ 80 (354)
T cd06827 2 ARATIDLAALRHNLRLVRELAPNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFF 80 (354)
T ss_pred eEEEEEHHHHHHHHHHHHhhCCCCeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCEEEEECCC
Confidence 4688999999999999999988789999999988 5899998888 5599999999999999999987655565664
Q ss_pred CCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCe
Q 045356 128 KPVSHIKYAASVGVNLTTFDSIQELDKIRKWH--PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGLA 204 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~--~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l~ 204 (419)
++++++.+++.++. ++++|+++++.+++.+ ++.+++|+|+++ .+|||+.++++.++++.+++ .+++
T Consensus 81 -~~~~~~~~~~~~l~-~~v~s~~~l~~l~~~~~~~~~~v~l~vDtG---------m~R~Gi~~~e~~~~~~~i~~~~~l~ 149 (354)
T cd06827 81 -SADELPLAAEYNLW-TVVHSEEQLEWLEQAALSKPLNVWLKLDSG---------MHRLGFSPEEYAAAYQRLKASPNVA 149 (354)
T ss_pred -CHHHHHHHHHcCCE-EEECCHHHHHHHHHhcCCCCeEEEEEeeCC---------cCCCCCCHHHHHHHHHHHHhCCCce
Confidence 45889999999985 6999999999998763 446788888875 39999999988888887766 6899
Q ss_pred EEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCCCcc
Q 045356 205 VIGVAFHIGSEAT-NLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHL 283 (419)
Q Consensus 205 l~Glh~H~gs~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 283 (419)
+.|+|+|+++++. +......|+++|.++.+. .. . . .+++..-+.-...+...+++|.++..|.-.. ..
T Consensus 150 l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~---~~-~-~--~h~~nS~~~~~~~~~~~d~vR~G~~lyG~~p----~~ 218 (354)
T cd06827 150 SIVLMTHFACADEPDSPGTAKQLAIFEQATAG---LP-G-P--RSLANSAAILAWPEAHGDWVRPGIMLYGASP----FA 218 (354)
T ss_pred EEEEEeeccCCCCCCcHHHHHHHHHHHHHHhc---cC-C-C--eeecCCHHHHCCccccCceEccCceeeCCCC----Cc
Confidence 9999999998753 323446778887776653 21 1 1 2333322210001223356787777764321 01
Q ss_pred EEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCceeeE
Q 045356 284 SVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRST 357 (419)
Q Consensus 284 ~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+ .+....-..|++.|.++|+.+|.... +..|.....++.++.+++|++.. ++.+.++......+++++
T Consensus 219 ~--~~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~----~r~ls~~~~v~i~g~~~p 292 (354)
T cd06827 219 D--KSGADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGY----PRHAPSGTPVLVNGQRTP 292 (354)
T ss_pred c--ccccCcCCeeeEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccCc----ccccCCCCEEEECCEEee
Confidence 1 00112358899999999999998421 46777777777788888886665 555544333335678999
Q ss_pred EeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 358 VFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 358 i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
|+|+.|| |+++.+++ .|++++||.++|.+.
T Consensus 293 ivGri~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 323 (354)
T cd06827 293 LVGRVSM--DMLTVDLTDLPEAKVGDPVELWGK 323 (354)
T ss_pred eeeEEec--cEEEEECCCCCCCCCCCEEEEECC
Confidence 9999999 99998885 678899999999875
No 31
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2e-29 Score=245.12 Aligned_cols=305 Identities=16% Similarity=0.181 Sum_probs=233.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 52 PFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPE----PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~----~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
-+.+||+++|++|++.+++..++.+++++||||++ ..|++.+.++|+ +|.|++++|+..+|++|+....|++.+.
T Consensus 5 ~~~~Idl~Al~~N~~~i~~~~~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~IlvL~g 84 (360)
T COG0787 5 ATAEIDLGALRHNLRALRELAGPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILVLEG 84 (360)
T ss_pred EEEEEeHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCEEEEcC
Confidence 36789999999999999998888999999999994 789999999999 9999999999999999997446777776
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCC---CeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HhcC
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPK---CELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAA-QASG 202 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~---~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~-~~~~ 202 (419)
..+++++..+.++++. .+|.|++|++.+...... .+++|+++++ .+|+|+.+++....+..+ +..+
T Consensus 85 ~~~~~~~~~~~~~~l~-~~v~s~~ql~~l~~~~~~~~~l~vhLkiDTG---------M~RlG~~~~e~~~~~~~~~~~~~ 154 (360)
T COG0787 85 FFPAEELELAAAYNLT-PVVNSLEQLEALKNAALKNKPLKVHLKIDTG---------MNRLGLRPEEAVALAIDLIALKN 154 (360)
T ss_pred cCChhhHHHHHHcCCe-EEECCHHHHHHHHHhhhhcCceEEEEEECCC---------CCcCCCChHHHHHHHHHHhhccC
Confidence 6677777888999986 599999999998875432 5566666654 399999998866666554 4466
Q ss_pred CeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCcceE--EEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccC
Q 045356 203 LAVIGVAFHIGSEAT-NLDAFHAAIAEAKTVFETAARLGMTKMRV--LDIGGGFACNPGFHEAASIIKDAIQTYFPNETA 279 (419)
Q Consensus 203 l~l~Glh~H~gs~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~ 279 (419)
+.+.|+++|+++++. +......|+++|. +...+ .+... +.-++|+...+ +..++++|.++..|.....+
T Consensus 155 ~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~~~-~~~~~~h~aNSa~~~~~~--~~~~d~vRpGi~lYG~~P~~ 226 (360)
T COG0787 155 LDLEGIFSHFACADEPEDPYTLKQLERFN-----LAKQG-LPGELSHLANSAGLLLGP--DYHFDMVRPGIALYGLSPSG 226 (360)
T ss_pred CceEEEEcccCCCCCCCChHHHHHHHHHH-----HHhcc-CCCceEEEeccHHHhcCc--ccccceeecceeeecCCccc
Confidence 779999999999863 2336677888776 22333 34444 44444443322 56778899999988543211
Q ss_pred CCccEEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCc
Q 045356 280 AGHLSVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRT 353 (419)
Q Consensus 280 ~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
.. . .-..|+++|.++|+.+|+... +..|.....+..+..+++|.++. ++-+.++......+
T Consensus 227 --~~------~-~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~----pR~~~~~~~Vli~G 293 (360)
T COG0787 227 --GL------D-NGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGY----PRALSNGTPVLING 293 (360)
T ss_pred --cc------C-CCcceeEEEEEEEEEEEEeCCCCcccCCcEEEccCCceEEEEeccccCCc----hhhcCCCCEEEECC
Confidence 01 1 458899999999999999522 46788877777788888886665 55555444434578
Q ss_pred eeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 354 YRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 354 ~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
++++++|++|| |+++.+++ .|++++||.+++.+-
T Consensus 294 ~r~pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 294 KRVPIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred EEeeEeeEEee--eeEEEECCCCCCCCCCCEEEEECC
Confidence 99999999999 99998885 778899999999865
No 32
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.97 E-value=6.1e-29 Score=229.03 Aligned_cols=188 Identities=34% Similarity=0.549 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHC
Q 045356 61 VISLYHQLISNLP-MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASV 139 (419)
Q Consensus 61 l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (419)
|++|++.+++.++ +++++|++|||+++.+++.+.+.+.+|+|+|.+|+..++++|+++.+|++++|.+++++++.++++
T Consensus 1 l~~N~~~i~~~~~~~~~i~~~vKan~~~~i~~~~~~~~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~ 80 (211)
T cd06808 1 IRHNYRRLREAAPAGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQ 80 (211)
T ss_pred ChHHHHHHHHhCCCCCEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHc
Confidence 5789999999998 799999999999999999999998899999999999999999987899999999989999999999
Q ss_pred CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEEeeCC
Q 045356 140 GVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQAS-GLAVIGVAFHIGS 214 (419)
Q Consensus 140 gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~-~l~l~Glh~H~gs 214 (419)
|...+++||+++++.+.+.+ ++.+++|||+++. ..+|||++++++.++++.+++. ++++.|+|+|+|+
T Consensus 81 ~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~-------~~~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~~H~~~ 153 (211)
T cd06808 81 GVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD-------ENGKFGVRPEELKALLERAKELPHLRLVGLHTHFGS 153 (211)
T ss_pred CCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCC-------CCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 54457999999999988653 6689999999852 1399999999999999888764 7999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC
Q 045356 215 EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN 256 (419)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~ 256 (419)
+..+.+.+.++++++.++++.+++.| .++.++|+|||++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~Ggg~~~~ 194 (211)
T cd06808 154 ADEDYSPFVEALSRFVAALDQLGELG-IDLEQLSIGGSFAIL 194 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEECCCCCcC
Confidence 87777788899999999999888888 789999999999973
No 33
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.97 E-value=3.6e-29 Score=248.99 Aligned_cols=313 Identities=15% Similarity=0.147 Sum_probs=235.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 52 PFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
.+.+||+++|++|++.+++..+ +.++++++|||+ ..++++.+.+.|+ +|.|++++|++.++++|+.. +|++.+
T Consensus 2 ~~~~Idl~al~~N~~~i~~~~~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~-~Ilvl~ 80 (368)
T cd06825 2 AWLEIDLSALEHNVKEIKRLLPSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKG-EILILG 80 (368)
T ss_pred eEEEEEHHHHHHHHHHHHHhCCCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCC-CEEEEc
Confidence 4788999999999999999886 678999999975 5899999999998 99999999999999999964 566666
Q ss_pred CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCe
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQ-ASGLA 204 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~-~~~l~ 204 (419)
+. .++++..++++++. .+++|.++++.+.+.++..+++|.|+++ .+|+|+.++++ +.+..+. ..+++
T Consensus 81 ~~-~~~~~~~~~~~~l~-~~i~~~~~l~~l~~~~~~~~vhlkvDtG---------m~R~G~~~~~~-~~~~~~~~~~~l~ 148 (368)
T cd06825 81 YT-PPVRAKELKKYSLT-QTLISEAYAEELSKYAVNIKVHLKVDTG---------MHRLGESPEDI-DSILAIYRLKNLK 148 (368)
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHhcCCCceEEEEeeCC---------CCCCCCCHHHH-HHHHHHHhCCCCc
Confidence 53 46889999998875 6999999999998877667788888875 39999998665 4444444 46899
Q ss_pred EEEEEEeeCCCCC-CH---HHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCC
Q 045356 205 VIGVAFHIGSEAT-NL---DAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAA 280 (419)
Q Consensus 205 l~Glh~H~gs~~~-~~---~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 280 (419)
+.|+++|+++... +. ....+|+++|.++.+.+++.| .++.++++|+..+.-..-+...+++|.++..|.-.
T Consensus 149 ~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g-~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~lYG~~---- 223 (368)
T cd06825 149 VSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARG-IEVGKIHIQSSYGILNYPDLKYDYVRPGILLYGVL---- 223 (368)
T ss_pred EEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcC-CCCCcEEeeCCHHHhCCccccCCeEccCeEEECCC----
Confidence 9999999998753 22 245678899999988888777 67778888777432100011235667766555321
Q ss_pred CccEEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccC-CCCCCc
Q 045356 281 GHLSVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASAS-HSNNRT 353 (419)
Q Consensus 281 ~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (419)
|...-.. +...-..|++.|.++|+.+|.... +..|.....++.++.+++|++.. ++.+.++. .....+
T Consensus 224 p~~~~~~-~~~~~l~pv~~l~a~v~~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~----~r~ls~~~~~V~i~g 298 (368)
T cd06825 224 SDPNDPT-KLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVASRTTRIATVSIGYADGY----PRSLSNQKAYVLING 298 (368)
T ss_pred CCCcccc-ccccCceeeEEEEEEEEEEEEcCCCCcCCCCCcEEcCCCcEEEEEeeecccCc----CcccCCCccEEEECC
Confidence 0011000 011347899999999999998421 46777776777788888887665 55554432 333578
Q ss_pred eeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 354 YRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 354 ~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
++++|+|+.|| |+++.+++ .|++++||.++|.+.
T Consensus 299 ~~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~G~ 333 (368)
T cd06825 299 KRAPIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQ 333 (368)
T ss_pred EEeeeeeEeec--ceEEEECCCCCCCCCCCEEEEEcC
Confidence 89999999999 99998885 578899999999865
No 34
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-27 Score=232.96 Aligned_cols=272 Identities=24% Similarity=0.358 Sum_probs=220.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----CcE
Q 045356 35 LLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLP----------MVHPYYAVKCNPEPAILETLAALG----SNF 100 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~----------~~~i~~avKan~~~~v~~~l~~~G----~g~ 100 (419)
+.++.+++-. +.+.-|+++-.++.|.++++.+..+|. +....|++|.|..+.|++.|.+.| .|+
T Consensus 66 L~elV~~l~~--~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GL 143 (652)
T COG1166 66 LAELVKALRD--RGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYPLGL 143 (652)
T ss_pred HHHHHHHHHh--cCCCCceEEechHHHHHHHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHHHHHHHhccCCCCCcc
Confidence 5666666633 488999999999999999999887652 467899999999999999999874 599
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHH---HCCCc-EEEecCHHHHHHHHhH----CCCCeEEEEEecCC
Q 045356 101 DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAA---SVGVN-LTTFDSIQELDKIRKW----HPKCELLIRIKSPV 172 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~---~~gi~-~i~vdS~~el~~i~~~----~~~~~v~lRv~~~~ 172 (419)
+..|..|+..++..--.+...+.+++.|+.+.|+.|+ +.|-. +++++-++|++.+.+. +.+..+++|+.+..
T Consensus 144 EAGSK~ELm~vLA~~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~s 223 (652)
T COG1166 144 EAGSKAELMAVLAHAGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLAS 223 (652)
T ss_pred cCCCHHHHHHHHHhcCCCCCeEEecCcccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEec
Confidence 9999999999998742345566666789999999995 44533 4699999999987664 33445666665532
Q ss_pred -CCCCCC-CCC--CCCCCCHHHHHHHHHHHHhcC--CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceE
Q 045356 173 -DGGARY-PLD--SKFGANPEEVAHLLGAAQASG--LAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRV 246 (419)
Q Consensus 173 -~~g~~~-~~~--sRfGi~~ee~~~~l~~~~~~~--l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 246 (419)
+.|.+- +.| +|||++..|+.++++.+++.+ =.+.-+|||+|||..+...++..++.+.+++-.|++.| .++++
T Consensus 224 qGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klG-a~i~~ 302 (652)
T COG1166 224 QGSGKWQSSGGEKSKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLG-ANIKY 302 (652)
T ss_pred ccccccccccCchhccCCCHHHHHHHHHHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHcC-CCceE
Confidence 233332 222 899999999999999988653 13445899999999999999999999999999999999 79999
Q ss_pred EEeCCCCCC-------------CCCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEe
Q 045356 247 LDIGGGFAC-------------NPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVR 310 (419)
Q Consensus 247 ldiGGG~~~-------------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~ 310 (419)
+|+|||+++ ++.+++|++-|-..+.+.+... +.++|.|+.|.||++++...+|++.|+++...
T Consensus 303 ~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~-~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~ 378 (652)
T COG1166 303 FDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEK-GLPHPTIISESGRAITAHHAVLIANVIGVERH 378 (652)
T ss_pred EeccCceeecccCccccccccccCCHHHHHHHHHHHHHHHHHhc-CCCCCeEEeecchhhhhcceEEEeeecccccC
Confidence 999999998 3678899998888998888765 68889999999999999999999999997653
No 35
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.96 E-value=8.5e-28 Score=237.75 Aligned_cols=305 Identities=13% Similarity=0.094 Sum_probs=223.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 52 PFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
.+.++|+++|++|++.+++..++.++++++|||+ ..+|++.+.+ + +|.|++++|+..++++|+.. +|++.++
T Consensus 4 ~~~~Idl~al~~N~~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~--~~~faVa~l~Ea~~LR~~Gi~~-~Ilvl~~ 80 (355)
T PRK03646 4 IQASLDLQALKQNLSIVREAAPGARVWSVVKANAYGHGIERIWSALGA--TDGFAVLNLEEAITLRERGWKG-PILMLEG 80 (355)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeccccCCHHHHHHHHhc--CCEEEEeeHHHHHHHHhcCCCC-CEEEEeC
Confidence 4688999999999999999888789999999976 5889998754 6 99999999999999999975 5666644
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCC
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH--PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGL 203 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~--~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l 203 (419)
...++++..++++++. .+++|.++++.+++.. +..+++|+|+++ .+|+|+.++++.++++.++. .++
T Consensus 81 ~~~~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~vhLkvDTG---------M~R~G~~~~e~~~~~~~i~~~~~l 150 (355)
T PRK03646 81 FFHAQDLELYDQHRLT-TCVHSNWQLKALQNARLKAPLDIYLKVNSG---------MNRLGFQPERVQTVWQQLRAMGNV 150 (355)
T ss_pred CCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhccCCCeEEEEEeeCC---------CCCCCCCHHHHHHHHHHHHhCCCC
Confidence 4467889999999986 6999999999988754 345667777764 49999999998888888765 589
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCCCcc
Q 045356 204 AVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHL 283 (419)
Q Consensus 204 ~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 283 (419)
++.|+++|+++.+. .+...+|+++|.++.+ + ... .+++++.-+.....+...+++|.++..|.... ..
T Consensus 151 ~~~Gi~sH~a~ad~-~~~~~~Q~~~F~~~~~-----~-~~~-~~h~~nSa~~~~~~~~~~d~vR~Gi~lYG~~p----~~ 218 (355)
T PRK03646 151 GEMTLMSHFARADH-PDGISEAMARIEQAAE-----G-LEC-ERSLSNSAATLWHPQAHFDWVRPGIILYGASP----SG 218 (355)
T ss_pred EEEEEEcCCCCCCC-CCHHHHHHHHHHHHHh-----c-cCC-CeeeeCCHHHHCCccccCCeeccceeeeCCCC----Cc
Confidence 99999999998753 2235677777776653 2 221 13433332210001223456777777664321 00
Q ss_pred EEEEcCcchh-cccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCceee
Q 045356 284 SVISEPGRFL-ADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRS 356 (419)
Q Consensus 284 ~li~EpGR~l-v~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+. .+...+ ..|++.+.++|+.+|.... +..|.....++.++.+++|++.. ++-+.++......++++
T Consensus 219 ~~--~~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~----~r~ls~~~~v~i~g~~~ 292 (355)
T PRK03646 219 QW--RDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARREQRIGIVAAGYADGY----PRHAPTGTPVLVDGVRT 292 (355)
T ss_pred cc--ccccccCceEEEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeecccccc----CcccCCCCEEEECCEEe
Confidence 00 000113 8899999999999998632 46677766677788888886665 55554433333467899
Q ss_pred EEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 357 TVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 357 ~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
+|+|+.|| |+++.+++ .|++++||.+++.+.
T Consensus 293 pivGrv~M--D~~~vDvt~~~~~~~Gd~V~l~G~ 324 (355)
T PRK03646 293 RTVGTVSM--DMLAVDLTPCPQAGIGTPVELWGK 324 (355)
T ss_pred eeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 99999999 99999885 578899999999875
No 36
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.95 E-value=3.8e-27 Score=234.61 Aligned_cols=253 Identities=19% Similarity=0.207 Sum_probs=189.3
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
+++||+++||+++|++|++.+++.++ +++++|++|+|+++.+++.+.+.|+ +|+|+|++|++.++++|++ +|++.
T Consensus 4 ~~~tP~~~id~~~l~~N~~~l~~~~~~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ili~ 81 (358)
T cd06819 4 EIDTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIR--DILIT 81 (358)
T ss_pred ccCCceEEEEHHHHHHHHHHHHHHHHHcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCC--eEEEE
Confidence 57899999999999999999999885 6789999999999999999999997 9999999999999999984 47777
Q ss_pred CCCCC----HHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCC-HHHHHHHH
Q 045356 125 NACKP----VSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGAN-PEEVAHLL 195 (419)
Q Consensus 125 gp~k~----~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~-~ee~~~~l 195 (419)
.|... .+.++.+.+.++ .+++||+++++.|.+.+ ...+|+|||+++ .+|||+. .+++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i-~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~~~~~~~~l~ 151 (358)
T cd06819 82 NEVVGPAKIARLAALARRAPL-IVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG---------QGRCGVPPGEAALALA 151 (358)
T ss_pred CCcCCHHHHHHHHHHhcCCCE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------CCcCCCCChHHHHHHH
Confidence 55443 344455666776 47999999999998764 346777888764 3899998 67888998
Q ss_pred HHHHh-cCCeEEEEEEeeCCCC------CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHH---HHH
Q 045356 196 GAAQA-SGLAVIGVAFHIGSEA------TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEA---ASI 265 (419)
Q Consensus 196 ~~~~~-~~l~l~Glh~H~gs~~------~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~---~~~ 265 (419)
+.+.+ .++++.|||+|.|+.. .+.+.+.++++.+.++.+.+++.| ..+.+++ |||+++.+ +..- ...
T Consensus 152 ~~i~~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~vs-gGgs~~~~-~~~~~~~~~e 228 (358)
T cd06819 152 RTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAG-LPCEIVT-GGGTGTYE-FEAASGVYTE 228 (358)
T ss_pred HHHHhCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCEEe-cCCCcChh-hhccCCcceE
Confidence 88776 5899999999887743 233455677888888888888888 7889996 99998722 1110 111
Q ss_pred HHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCCceEEEEecCC
Q 045356 266 IKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGK 322 (419)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~ 322 (419)
++.+..-+++. .+ .....|||+.+..+|..++++|+.+... ...+++.|.
T Consensus 229 lr~G~~i~~d~--~~--~~~~~~~~~~~~~~A~~v~a~Vis~~~~---~~~~ld~G~ 278 (358)
T cd06819 229 LQAGSYVFMDA--DY--GDNEDEGGAPPFENALFVLTTVISANAP---GRAVVDAGL 278 (358)
T ss_pred EccCceEEecH--HH--HhcCCccCCCccceeeEEEEEEeeeccC---CeEEECCcc
Confidence 22221111111 00 0112378999999999999999995432 345566664
No 37
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.95 E-value=1.7e-26 Score=252.53 Aligned_cols=323 Identities=14% Similarity=0.079 Sum_probs=241.7
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-cEEEcCHHH
Q 045356 34 GLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP----EPAILETLAALGS-NFDCASPSE 107 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~----~~~v~~~l~~~G~-g~~VaS~~E 107 (419)
+++++++.+. +..+.+++++|+++|++|++.+++..+ +.++++++|||+ ..++++.+.+.|+ +|.|++++|
T Consensus 445 ~le~i~~~~~---~~~~~~~~~Idl~al~~N~~~i~~~~~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~E 521 (822)
T PRK11930 445 EFEQITELLE---QKVHETVLEINLNAIVHNLNYYRSKLKPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADE 521 (822)
T ss_pred CHHHHHHHHH---HhhhhHHhhhhHHHHHHHHHHHHhhCCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHH
Confidence 3445555442 245777899999999999999999775 689999999999 4899999999998 999999999
Q ss_pred HHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCCCCCC
Q 045356 108 IQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH-----PKCELLIRIKSPVDGGARYPLDS 182 (419)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~-----~~~~v~lRv~~~~~~g~~~~~~s 182 (419)
+..++++|+.. +|++.++. ++++..++++++. ++++|.++++.+.+.+ ...+++|+|+++ .+
T Consensus 522 a~~lr~~g~~~-~Ilvl~~~--~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDtG---------m~ 588 (822)
T PRK11930 522 GVSLRKAGITL-PIMVMNPE--PTSFDTIIDYKLE-PEIYSFRLLDAFIKAAQKKGITGYPIHIKIDTG---------MH 588 (822)
T ss_pred HHHHHhcCCCC-CEEEEeCC--HHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceEEEEEeeCC---------CC
Confidence 99999999974 57777874 6889999999885 6899999999988764 234566666654 49
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCeEEEEEEeeCCCCC-CH-HHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCH
Q 045356 183 KFGANPEEVAHLLGAAQA-SGLAVIGVAFHIGSEAT-NL-DAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGF 259 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~-~~l~l~Glh~H~gs~~~-~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~ 259 (419)
|+|+.++++.++++.+.. .++++.|+++|+++.+. +. ....+|+++|.++.+.++..+... .+++++..-+.-...
T Consensus 589 R~G~~~~~~~~~~~~i~~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~-~~~h~~nS~~~~~~~ 667 (822)
T PRK11930 589 RLGFEPEDIPELARRLKKQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYK-PIRHILNSAGIERFP 667 (822)
T ss_pred CCCCChHHHHHHHHHHHhCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC-CcEEccCCHHHhCCc
Confidence 999999988888887765 58999999999998743 32 345688999999888887653133 356665554431111
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHH
Q 045356 260 HEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEE 333 (419)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~ 333 (419)
+...+++|.++..|... |... + ..-+.|++.+.++|+.+|.... +..|....+++.++.+++|++
T Consensus 668 ~~~~d~vR~G~~lyG~~----p~~~----~-~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaD 738 (822)
T PRK11930 668 DYQYDMVRLGIGLYGVS----ASGA----G-QQALRNVSTLKTTILQIKHVPKGETVGYGRKGVVTKPSRIATIPIGYAD 738 (822)
T ss_pred cccCCeEeeCceeECCC----CCCC----c-cccCEEeeEEEEEEEEEEEcCCcCCCCCCCcEEcCCCcEEEEEeeeccc
Confidence 22336778888777431 1010 0 1236899999999999998532 467777777777888888866
Q ss_pred HHhhcceeeeccc-CCCCCCceeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcCC
Q 045356 334 VIAKCGAHILASA-SHSNNRTYRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSDM 389 (419)
Q Consensus 334 ~~~~~~~~~~~~~-~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~~ 389 (419)
+. ++.+.+. ......+++++|+|++|| |+++.+++ . ++++||.+++.+.
T Consensus 739 G~----~r~~s~~~~~v~i~g~~~pivGrv~M--D~~~vdvt~~-~~~~Gd~v~l~g~ 789 (822)
T PRK11930 739 GL----NRRLGNGVGYVLVNGQKAPIVGNICM--DMCMIDVTDI-DAKEGDEVIIFGE 789 (822)
T ss_pred cc----ccccCCCceEEEECCEEcceeeEeec--ceEEEEcCCC-CCCCCCEEEEECC
Confidence 65 5555433 333356789999999999 99998885 4 6889999988864
No 38
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.94 E-value=2.6e-26 Score=227.72 Aligned_cols=315 Identities=14% Similarity=0.168 Sum_probs=215.7
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccC-CcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 52 PFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCN-PEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan-~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
|+++||+++|++|++.+++..+ ++++++++||| ..+++++.+.+.|+ +|.|++++|+..++++|+.. +|++.|+.
T Consensus 2 P~l~Idl~al~~Ni~~i~~~~~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~-~illlg~~ 80 (353)
T cd06815 2 PRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISG-PKMLLRIP 80 (353)
T ss_pred CeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCC-CEEEECCC
Confidence 8999999999999999998775 68999999999 67999999999998 99999999999999999864 46666654
Q ss_pred CCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cC
Q 045356 128 KPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SG 202 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~ 202 (419)
.+++++.++++++. .+++|+++++.+++.+ +..+++|+|+++ .+|+|+.++++.++++.++. ++
T Consensus 81 -~~~~~~~~~~~~~~-~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDtG---------m~R~G~~~~e~~~~~~~i~~~~~ 149 (353)
T cd06815 81 -MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLG---------DLREGVLPEDLLDFVEEILKLPG 149 (353)
T ss_pred -CHHHHHHHHhhcce-eccChHHHHHHHHHHHHHcCCccceEEEEecC---------CCccccCHHHHHHHHHHHhCCCC
Confidence 46899999998764 4688999999887643 345778888775 38999999888888888876 58
Q ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCCCCCCCH-----HHHHHHHHHHHHhhCCC
Q 045356 203 LAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAAR-LGMTKMRVLDIGGGFACNPGF-----HEAASIIKDAIQTYFPN 276 (419)
Q Consensus 203 l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~ldiGGG~~~~~~~-----~~~~~~i~~~l~~~~~~ 276 (419)
+++.|+++|+++.... .....+.+++.++.+.+++ .+ ..+.++++|+.-+. ..+ ...++++|.++.-|..-
T Consensus 150 l~~~Gi~tH~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~S~~~-~~~~~~~~~~~~~~vRpG~~l~yG~ 226 (353)
T cd06815 150 IELVGIGTNLGCYGGV-LPTEENMGKLVELKEEIEKEFG-IKLPIISGGNSASL-PLLLKGELPGGINQLRIGEAILLGR 226 (353)
T ss_pred cEEEecccCccccCCC-CCCHHHHHHHHHHHHHHHHhhC-CCCCEEeccchHHH-HHHHhcCCcCCCceeEeehhhhccc
Confidence 9999999999876421 1112344555555555555 46 56678887765332 000 01235667776653221
Q ss_pred ccCCCccEEEEcCcchhcccceEEEEEEEEEEEe-----CC--------ceEEEEecCCCCCcchhhhHHHHhhcceeee
Q 045356 277 ETAAGHLSVISEPGRFLADTAFTLATKVIGKRVR-----DE--------LREYWINDGKYGSFGWLSSEEVIAKCGAHIL 343 (419)
Q Consensus 277 ~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~-----~~--------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~ 343 (419)
.+. ... +......+++.+.|+|+.+|.. |+ +..|.....+..+..+++|.+.. ++-+
T Consensus 227 ~p~---~~~---~~~~~l~p~~~l~s~Vi~i~~~~~~~~g~~~yd~~G~~~~~~~~~~~~ia~v~~GyaDG~----~r~l 296 (353)
T cd06815 227 ETT---YNE---PIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVD----PDGL 296 (353)
T ss_pred ccc---CCc---cccccccccEEEEEEEEEEecCCCCCCcceeeccCCCCceeecCCceEEEEEecccccCC----HHhC
Confidence 110 000 0012478999999999999862 21 11222222233334445553322 2212
Q ss_pred cccCCCCCCceeeEEeccCCCCCCccccCCC-CC-CCCCCCEEE-EcCCCcccccCCCCC
Q 045356 344 ASASHSNNRTYRSTVFGPTCAAVDKVFTGHQ-LP-ELEVSDWLV-FSDMGAYTTACGTNF 400 (419)
Q Consensus 344 ~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp-~l~~GD~lv-~~~~GAY~~~~~~~f 400 (419)
. ..+.+++++|. || |+++.+++ .| ++++||.+. |++-.+-+..+-+.|
T Consensus 297 s------~~g~~~~ivG~-~m--d~~~vdv~~~~~~~~~Gd~v~l~p~h~~~~~~~~~~~ 347 (353)
T cd06815 297 T------PVDNGIEILGA-SS--DHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPY 347 (353)
T ss_pred c------cCCCCCeEEec-CC--ceEEEEccCCCCCCCCCCEEEEEeCHHHHHHHhcCCC
Confidence 1 12567999998 99 99998884 45 789999984 456555555444444
No 39
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.94 E-value=3e-25 Score=222.18 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=157.5
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEE
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
++++||+++||+++|++|++++++.++ +++++|++|||+++.+++.+.+.|+ +|+|+|++|++.++++|++ +|++
T Consensus 2 ~~~~tP~~vid~~~l~~Ni~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~--~il~ 79 (374)
T cd06812 2 AALDTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILY 79 (374)
T ss_pred CCCCCceEEEeHHHHHHHHHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC--eeEE
Confidence 367999999999999999999999885 6899999999999999999999997 9999999999999999994 5777
Q ss_pred cCCCCCHHHHHHHHH---CCCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHH-H-HHH
Q 045356 124 ANACKPVSHIKYAAS---VGVN-LTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPE-E-VAH 193 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~---~gi~-~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~e-e-~~~ 193 (419)
..+ +++.+++.+++ .++. .++|||.++++.+.+.+ ...+|+|||+++ ++|||+.++ + +.+
T Consensus 80 ~~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~~~~~~~~~ 149 (374)
T cd06812 80 AVG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD---------GHRGGIAPDSDALLE 149 (374)
T ss_pred eCC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCC---------CCcCCCCCCcHHHHH
Confidence 665 46677766654 4544 36999999999998764 346778887664 489999774 2 566
Q ss_pred HHHHHHhcCCeEEEEEEeeCCC--CCCHHHHH----HHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 194 LLGAAQASGLAVIGVAFHIGSE--ATNLDAFH----AAIAEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 194 ~l~~~~~~~l~l~Glh~H~gs~--~~~~~~~~----~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
+++.++..++++.|+|+|+|++ +.+.+.+. ++++.+.++.+.+++.| .++.++|+||+...
T Consensus 150 l~~~i~~~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~v~~Ggt~~~ 216 (374)
T cd06812 150 IARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAG-LPCPVVSVGSTPTA 216 (374)
T ss_pred HHHHHhcCCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCEEeecCChhh
Confidence 6666655689999999999986 34555443 34555777777788788 79999999987654
No 40
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.93 E-value=2e-23 Score=208.66 Aligned_cols=259 Identities=14% Similarity=0.106 Sum_probs=189.2
Q ss_pred HHHHHHHHhhc--CCCCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccC-CcHHHHHHHHHcCC-cEEEcCHHHHH
Q 045356 36 LEFMESIILKR--QELDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCN-PEPAILETLAALGS-NFDCASPSEIQ 109 (419)
Q Consensus 36 ~~~~~~~~~~~--~~~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan-~~~~v~~~l~~~G~-g~~VaS~~E~~ 109 (419)
.++|+.-++=+ -....++|+||+++|++|++.+++.++ +.+++|++||| .++++++.+.+.|+ +|+|+|++|++
T Consensus 11 ~~~~~~a~~~~~~g~~~~~~yvIDl~~I~~N~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~ 90 (382)
T cd06811 11 PALIEAALTLHQSGAIPPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEAR 90 (382)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEecHHHHHHHHHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHH
Confidence 45555443322 457788999999999999999999886 68999999999 58999999999999 99999999999
Q ss_pred HHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCC
Q 045356 110 AVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFG 185 (419)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfG 185 (419)
.++++|+++..|... ...++++++.++++++..++|+|+++++.|++.+ +..+|+|||+++.+ .+.+++|.|
T Consensus 91 ~lr~aGi~~~~I~~l-~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~---ri~~g~~~G 166 (382)
T cd06811 91 ALHEAGLPLGHVGHL-VQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDED---TLYPGQEGG 166 (382)
T ss_pred HHHHcCCCHHhEEEc-cCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCCC---ccccCccce
Confidence 999999987677643 3457899999999986557999999999998753 45789999998643 344557789
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEeeCCCCCCH----HHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHH
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFHIGSEATNL----DAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFH 260 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H~gs~~~~~----~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~ 260 (419)
++++++.++++.+++ .++++.|+ +|+++...+. ..+.++++.+.++.+.+++.| ..+.++|+||.-.+ ..+.
T Consensus 167 ~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g-~~~~~is~Gga~ss-~~l~ 243 (382)
T cd06811 167 FPLEELPAVLAAIKALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRG-IEILQLNAPSATSC-ATLP 243 (382)
T ss_pred ecHHHHHHHHHHHHcCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHHCC-CCCeEEccCCCcch-hhHH
Confidence 999999999988876 58999999 4556542111 124557777888888888888 78899997754221 1111
Q ss_pred HH----HHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEE
Q 045356 261 EA----ASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRV 309 (419)
Q Consensus 261 ~~----~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~ 309 (419)
.+ .++++.++..|.... .... ...-..+++.++++|..++.
T Consensus 244 ~~~~~~~t~vRpG~~LyG~~p----~~~~----~~~~lkpam~l~s~Is~~~~ 288 (382)
T cd06811 244 LLAEYGVTHGEPGHALTGTTP----LHAV----GDQPEKPAMVYVSEVSHTFG 288 (382)
T ss_pred HHHhCCCcEEeccEEEecCcc----hhhc----cccCCcccEEEEEEEEEecC
Confidence 11 123333333332210 0000 11236789999999999876
No 41
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.92 E-value=8.7e-24 Score=211.85 Aligned_cols=239 Identities=20% Similarity=0.252 Sum_probs=173.6
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 49 LDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 49 ~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
..||+++||+++|++|++++++.++ +++++|++|+|.++.+++.+.+.|+ +|+|+|++|++.++++|++ +|++.+
T Consensus 1 ~~tP~l~idl~~l~~N~~~m~~~~~~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~--~il~~~ 78 (382)
T cd06818 1 VSLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLAN 78 (382)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHHhhcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCC--eEEEec
Confidence 3699999999999999999999883 5899999999999999999999998 9999999999999999994 688775
Q ss_pred CC--CC-HHHHHHHHHC--CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCC-HHHHHHH
Q 045356 126 AC--KP-VSHIKYAASV--GVN-LTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGAN-PEEVAHL 194 (419)
Q Consensus 126 p~--k~-~~~l~~a~~~--gi~-~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~-~ee~~~~ 194 (419)
|. ++ .+++..+++. +.. .+++||+++++.|.+.+ +..++.|+|+++ .+|.|+. .+++.++
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g---------~~R~G~~~~~~~~~l 149 (382)
T cd06818 79 QLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP---------GGRTGVRTEAEALAL 149 (382)
T ss_pred CcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------CCCCCCCCHHHHHHH
Confidence 43 23 3347777753 443 36999999999998764 346788888874 4899996 5778888
Q ss_pred HHHHHh-cCCeEEEEEEeeCCC-----CCCHHHHHHHHHHHHHHHHHHHHcCCCcceE-EEeCCCCCCCCCHHHHHHHHH
Q 045356 195 LGAAQA-SGLAVIGVAFHIGSE-----ATNLDAFHAAIAEAKTVFETAARLGMTKMRV-LDIGGGFACNPGFHEAASIIK 267 (419)
Q Consensus 195 l~~~~~-~~l~l~Glh~H~gs~-----~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-ldiGGG~~~~~~~~~~~~~i~ 267 (419)
++.+.+ .++++.|||+|.|++ ..+.+...+.++.+.++.+.+++.+...++. +..|||-+. ++...
T Consensus 150 ~~~i~~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilSgGgT~~---~~~~~---- 222 (382)
T cd06818 150 ADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAW---FDLVA---- 222 (382)
T ss_pred HHHHHcCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCCHh---HHHHH----
Confidence 887765 699999999999886 2334445566667777777776655122232 445666432 22211
Q ss_pred HHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEE
Q 045356 268 DAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRV 309 (419)
Q Consensus 268 ~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~ 309 (419)
..+...... ....+.+|||||++.+++.+.+.|.++|.
T Consensus 223 ~~~~~~~~~----~~~~~el~pG~y~~~D~g~~~~~~~~~k~ 260 (382)
T cd06818 223 EALAALALD----GPVTLVLRSGCYVTHDHGIYRRAQQALRA 260 (382)
T ss_pred HhhcccccC----CceeEEEecCeeEEecHHHHhhhhhhhhc
Confidence 112221111 12578999999999998766555544444
No 42
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.92 E-value=2.6e-23 Score=208.65 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=174.1
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHH-cCC-cEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAA-LGS-NFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~-~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
++++||+++||+++|++|++.+++.+++.+++|++||++.+++++.+.+ .|+ +|.|+|++|+..++++|+ .+|++.
T Consensus 7 ~~~~tP~~viDldal~~N~~~l~~~~~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~--~~ILl~ 84 (388)
T cd06813 7 AGLDAPFAFVDLDALDANAADLVRRAGGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGF--DDILVA 84 (388)
T ss_pred ccCCCCEEEEEHHHHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCC--CeEEEe
Confidence 3689999999999999999999998888899999999999999998877 598 999999999999999999 479999
Q ss_pred CCCCCHHHHHHHHHC-----CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCC-CCCCCC-HHHHHH
Q 045356 125 NACKPVSHIKYAASV-----GVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLD-SKFGAN-PEEVAH 193 (419)
Q Consensus 125 gp~k~~~~l~~a~~~-----gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~-sRfGi~-~ee~~~ 193 (419)
+|.+++++++.+++. ++ .++|||.++++.+.+.+ ...+|+|||++++..+ ...+| .|.|+. ++++.+
T Consensus 85 ~p~~~~~~l~~~~~~~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~-G~~~G~~Rs~~~~~~~~~~ 162 (388)
T cd06813 85 YPSVDRAALRELAADPKLGATI-TLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFG-GLHFGVRRSPLHTPAQALA 162 (388)
T ss_pred CCCCCHHHHHHHHhhhccCCeE-EEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCcccc-ccccCcCCCCCCCHHHHHH
Confidence 898888999999874 44 36999999999998753 3467888888865321 01112 455554 778888
Q ss_pred HHHHHHh-cCCeEEEEEEeeCC-C-CCCH-H--------------HHHHHH-HHHHHHHHHHHHcCCCcceEEEeCCCCC
Q 045356 194 LLGAAQA-SGLAVIGVAFHIGS-E-ATNL-D--------------AFHAAI-AEAKTVFETAARLGMTKMRVLDIGGGFA 254 (419)
Q Consensus 194 ~l~~~~~-~~l~l~Glh~H~gs-~-~~~~-~--------------~~~~~~-~~~~~l~~~l~~~g~~~~~~ldiGGG~~ 254 (419)
+++.+.+ .++++.|||+|.|+ + ..+. + ...+++ +...++++.+++.| .++.++| |||.+
T Consensus 163 l~~~i~~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~g-~~~~~vN-sgGt~ 240 (388)
T cd06813 163 LAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEG-EDLEFVN-GGGTG 240 (388)
T ss_pred HHHHHhcCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEe-CCCch
Confidence 8888765 68999999999776 2 1111 1 111222 22235666777778 6888899 77766
Q ss_pred CCCC--HHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEE
Q 045356 255 CNPG--FHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIG 306 (419)
Q Consensus 255 ~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~ 306 (419)
.-+. .+....+++.+..-|.+.. .-....+-..+|+.+.++|+.
T Consensus 241 s~~~~~~~~~~tevrpGs~lyg~~~--------~~~~~~~~~~pAl~~~t~Vv~ 286 (388)
T cd06813 241 SLESTAADAVVTEVTAGSGLYAPAL--------FDHYRSFQPEPAAGFALPVVR 286 (388)
T ss_pred hheeecCCCCceEeccceEEecchh--------hcccccCCCCceeEEEeeEEc
Confidence 5110 0111123444444443210 001111237899999999943
No 43
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.91 E-value=1.7e-23 Score=208.64 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=173.6
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
++++||+++||+++|++|++.+++.++ +.+++|++|||.++++++.+.+.|+ +|+|+|++|++.++++|++ +|++.
T Consensus 5 ~~~~tP~~~id~~~l~~Ni~~~~~~~~~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ill~ 82 (361)
T cd06821 5 DEIISPALAVYPDRIEENIRRMIRMAGDPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLLA 82 (361)
T ss_pred ccCCCceEEEeHHHHHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCC--eEEEe
Confidence 468999999999999999999999886 5689999999999999999999998 9999999999999999995 56655
Q ss_pred CCCC---CHHHHHHHHHC-CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHH-HHHHH
Q 045356 125 NACK---PVSHIKYAASV-GVN-LTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPE-EVAHL 194 (419)
Q Consensus 125 gp~k---~~~~l~~a~~~-gi~-~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~e-e~~~~ 194 (419)
.|.. ..+.++.+.+. +.. .++|||+++++.+++.+ ...+|+|||+++ .+|+|+.++ ++.++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G---------~~R~Gv~~~~~~~~l 153 (361)
T cd06821 83 YPLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG---------MNRTGIAPGEDAEEL 153 (361)
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCC---------CCcCCCCChHHHHHH
Confidence 4432 22233444432 122 36999999999998764 345777777764 389999886 78899
Q ss_pred HHHHHh-cCCeEEEEEEeeCCCC-CC----HHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHH
Q 045356 195 LGAAQA-SGLAVIGVAFHIGSEA-TN----LDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKD 268 (419)
Q Consensus 195 l~~~~~-~~l~l~Glh~H~gs~~-~~----~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~ 268 (419)
++.+.+ +++++.|||+|.|+.. .+ .+.+.++++.+.++.+.+++.| ..+.++++||.-......+....+++.
T Consensus 154 ~~~i~~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~v~~GgS~~~~~~~~~~~~~vr~ 232 (361)
T cd06821 154 YRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAG-LPVPELVAGGTPSFPFHAAYTDVECSP 232 (361)
T ss_pred HHHHhhCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCcchhhhccCCCcEECC
Confidence 888876 6999999999988742 33 3456778888888888888888 688999988764331100001122332
Q ss_pred HHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEE
Q 045356 269 AIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKR 308 (419)
Q Consensus 269 ~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k 308 (419)
+.--|.+. + ..... ++ .-..+|+.++++|+++-
T Consensus 233 G~~l~gd~-~---~~~~~--~~-~~~~~al~v~s~Vis~~ 265 (361)
T cd06821 233 GTFVLWDA-G---YGSKL--PD-LGFKPAALVVTRVISHP 265 (361)
T ss_pred ceEEEecH-H---Hhhcc--CC-CcCceeEEEEEEEEeec
Confidence 22222110 0 00000 11 12678889999999974
No 44
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.90 E-value=3e-22 Score=199.07 Aligned_cols=194 Identities=16% Similarity=0.132 Sum_probs=158.6
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
+||+++||+++|++|++.+++.++ +++++|++|+|+++++++.+.+.|+ +|+|+|++|++.++++|++ +|++..|
T Consensus 2 ~tP~l~id~~~l~~Ni~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~i~i~~~ 79 (353)
T cd06820 2 DTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLS--DIFIAYP 79 (353)
T ss_pred CCceEEEeHHHHHHHHHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCC--eEEEECC
Confidence 699999999999999999999875 5899999999999999999999998 9999999999999999994 5887666
Q ss_pred CCCHHHH---HHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCH-HHHHHHHHHH
Q 045356 127 CKPVSHI---KYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANP-EEVAHLLGAA 198 (419)
Q Consensus 127 ~k~~~~l---~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~-ee~~~~l~~~ 198 (419)
...+..+ ..+++.....+++||+++++.|++.+ +..+|.|+|+++ .+|+|+.+ +++.++++.+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~~~~~~~~l~~~i 150 (353)
T cd06820 80 IVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG---------MNRCGVQTPEDAVALARAI 150 (353)
T ss_pred cCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCC---------CCcCCCCChHHHHHHHHHH
Confidence 5444444 34443332246999999999998864 346778888774 49999988 8888888887
Q ss_pred Hh-cCCeEEEEEEeeCCCCCC---HHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 199 QA-SGLAVIGVAFHIGSEATN---LDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 199 ~~-~~l~l~Glh~H~gs~~~~---~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
.+ +++++.|+|+|.|+.... ...+.++++.+.++.+.+++.| ..+.++++||+...
T Consensus 151 ~~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~vs~Ggs~t~ 210 (353)
T cd06820 151 ASAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAG-LEPPVVSGGSTPTL 210 (353)
T ss_pred HhCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEeCcChhh
Confidence 75 689999999999986422 3455677888888888888888 78999998888653
No 45
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.85 E-value=1.6e-20 Score=186.04 Aligned_cols=182 Identities=20% Similarity=0.215 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHH
Q 045356 60 VVISLYHQLISNL--PMVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYA 136 (419)
Q Consensus 60 ~l~~ni~~~~~~~--~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a 136 (419)
+|++|++.+++.+ +++++++++|||.++++++.+.+.|+ +|+|+|++|++.++++|+ .+|++.+|..++++++++
T Consensus 1 ~l~~Ni~~~~~~~~~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~--~~Ili~~~~~~~~~~~~~ 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARL 78 (345)
T ss_pred ChHHHHHHHHHHHHHcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCC--CeEEEECCcCCHHHHHHH
Confidence 4789999999887 37899999999999999999999998 999999999999999999 579998888767777777
Q ss_pred H---H--CCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHH--Hh-cCCe
Q 045356 137 A---S--VGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAA--QA-SGLA 204 (419)
Q Consensus 137 ~---~--~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~--~~-~~l~ 204 (419)
+ + .++. ++|||.++++.|++.+ .+.+|+|+|+++ ++|+|+++++...+.... .+ .+++
T Consensus 79 ~~l~~~~~~i~-~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G---------~~R~Gv~~~~~~~l~~~~~i~~~~~l~ 148 (345)
T cd07376 79 AGLLRQEAEFH-VLVDSPEALAALAAFAAAHGVRLRVMLEVDVG---------GHRSGVRPEEAAALALADAVQASPGLR 148 (345)
T ss_pred HHHHhcCCeEE-EEECCHHHHHHHHHHHHhcCCeeEEEEEeCCC---------CCcCCCCCcHHHHHHHHHHhccCCCeE
Confidence 5 3 4553 6899999999998764 345677777764 489999875543333322 23 5899
Q ss_pred EEEEEEeeCCCC-CC-----HHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 205 VIGVAFHIGSEA-TN-----LDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 205 l~Glh~H~gs~~-~~-----~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
+.|+|+|+|+.. .+ .....++++.+.++.+.++ .| .++.++++||.-..
T Consensus 149 l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g-~~~~~vs~G~S~~~ 203 (345)
T cd07376 149 LAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RG-LACPTVSGGGTPTY 203 (345)
T ss_pred EeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cC-CCCCEEEeCCCcCh
Confidence 999999999652 22 2244566777776666565 57 67789998877543
No 46
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.84 E-value=5.2e-21 Score=159.55 Aligned_cols=105 Identities=44% Similarity=0.698 Sum_probs=82.1
Q ss_pred EEEEEEEEEEEeCC-------ceEEEEecCCCCCcchhhh-H-HHHhhcceeeecccCCCCCCceeeEEeccCCCCCCcc
Q 045356 299 TLATKVIGKRVRDE-------LREYWINDGKYGSFGWLSS-E-EVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKV 369 (419)
Q Consensus 299 ~lvt~V~~~k~~~~-------~~~~~i~dg~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l 369 (419)
+|+|+|+++|..++ .+++++++|+|+++....+ . .| ..++.. .......++.|+||+|++.|++
T Consensus 1 ~Lvt~Vi~~k~~~~~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~i~GptC~~~D~i 73 (116)
T PF00278_consen 1 TLVTRVIGVKRRRDSDLKNKKRRWYYVDDGVYGSFDPWLYDHQFP-----ILPLSR--PDEEPCYPSTIWGPTCDSGDVI 73 (116)
T ss_dssp EEEEEEEEEEEETT---HCTTEEEEEESS-TTTCCHHHHHS---------EEEESS--TTTSTEEEEEEEESSSSTTSEE
T ss_pred CEEEEEEEEEEcCCCccccceeeEEEEeCChhhChHHHhhCcCce-----eeeecc--ccccCcEEEEEEECCcCCCceE
Confidence 58999999998764 4677789999988777655 2 22 333332 2235678999999999999999
Q ss_pred ccCCCCC-CCCCCCEEEEcCCCcccccCCCCCCCCCCCCccE
Q 045356 370 FTGHQLP-ELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPT 410 (419)
Q Consensus 370 ~~~~~lp-~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~ 410 (419)
.+++.|| ++++||||+|.+||||+++++++|||+++|.++.
T Consensus 74 ~~~~~lP~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~~v~ 115 (116)
T PF00278_consen 74 ARDVMLPKELEVGDWLVFENMGAYTISLSSNFNGFPRPAEVY 115 (116)
T ss_dssp EEEEEEESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCEEEE
T ss_pred eeeccCCCCCCCCCEEEEecCcccchhhCccccCCCCCCEEE
Confidence 9999999 9999999999999999999999999999988743
No 47
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.84 E-value=3.5e-19 Score=177.80 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=145.4
Q ss_pred cCCCCCcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHH-HcCC-cEEEcCHHHHHHHHHCCCCCCcEE
Q 045356 46 RQELDEPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNPEPAILETLA-ALGS-NFDCASPSEIQAVLALSVSPDRII 122 (419)
Q Consensus 46 ~~~~~tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~~~~v~~~l~-~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii 122 (419)
+...+||+.++|+++|++|++.+++..+ +.++++++|||++..+++.+. +.|+ +|.|+++.|++.+++.|.. .+|+
T Consensus 4 ~~~l~TP~l~IDl~al~~Ni~~m~~~~~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~-~dIL 82 (379)
T cd06814 4 QAGIGEPTLLLDKDRLDHNIDLLREHLAGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPD-ADIL 82 (379)
T ss_pred hcCCCCCEEEEEHHHHHHHHHHHHHhhCCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCC-cCeE
Confidence 3578999999999999999999999886 789999999999999999877 6898 9999999999999888654 4788
Q ss_pred EcCCCCCHHHHHHHH----------HCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCH
Q 045356 123 YANACKPVSHIKYAA----------SVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANP 188 (419)
Q Consensus 123 ~~gp~k~~~~l~~a~----------~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ 188 (419)
+.+|. .++++.+.+ +.++. ++|||.++++.+.+.+ ...+++|+|+++ ++|.|+.+
T Consensus 83 l~~p~-~~~~~~r~~~~l~~~~~~~~~~l~-~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDtG---------m~R~Gv~~ 151 (379)
T cd06814 83 LGKPM-PVAAAARFYRQLTGSAFRPARQLQ-WLIDTPERLAQYRALARSLGLTLRINLELDVG---------LHRGGFAD 151 (379)
T ss_pred EeCCC-CcHHHHHHHhhccccccchhcCEE-EEECCHHHHHHHHHHHHHcCCceEEEEEeCCC---------CCCCCCCC
Confidence 87775 334443332 34453 6999999999998764 334555655554 48999976
Q ss_pred H-HHHHHHHHHHh-cCCeEEEEEEeeCCC--CCCH---HHH-HHHH---HHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 189 E-EVAHLLGAAQA-SGLAVIGVAFHIGSE--ATNL---DAF-HAAI---AEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 189 e-e~~~~l~~~~~-~~l~l~Glh~H~gs~--~~~~---~~~-~~~~---~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
+ ++.++++.+.. .++++.||++|-|+. ..+. +.. .... +.+.+..+.++..| ..+.+++ |||.|+
T Consensus 152 ~~~~~~l~~~i~~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~vs-~GgTpT 227 (379)
T cd06814 152 PQTLPKALTAIDAPPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAH-TQKLTLN-TGGSPT 227 (379)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccC-CCccEEe-cCCCcc
Confidence 5 68888888765 589999999999873 2322 222 2222 33333333444458 6888898 667665
No 48
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.84 E-value=3.2e-19 Score=178.40 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=151.2
Q ss_pred CCCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcC---CcEEEcCHHHHHHHHHCCCCCC--c
Q 045356 48 ELDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALG---SNFDCASPSEIQAVLALSVSPD--R 120 (419)
Q Consensus 48 ~~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G---~g~~VaS~~E~~~a~~~G~~~~--~ 120 (419)
+..||+.++|+++|++|++.+++..+ +.++++++||+..+++++.+.+.| .+|.|++++|++.++++|+... +
T Consensus 3 ~l~tP~l~Idl~al~~Ni~~m~~~~~~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~d 82 (389)
T cd06817 3 DLPTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDD 82 (389)
T ss_pred CCCCCeEEEEHHHHHHHHHHHHHHHHHcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhcccccccc
Confidence 57899999999999999999998774 689999999999999999999988 5999999999999999998643 2
Q ss_pred EEEcCCCCCHHHHHHHHHC----C-CcEEEecCHHHHHHHHhH-CC----CCeEEEEEecCCCCCCCCCCCCCCCCCH--
Q 045356 121 IIYANACKPVSHIKYAASV----G-VNLTTFDSIQELDKIRKW-HP----KCELLIRIKSPVDGGARYPLDSKFGANP-- 188 (419)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~----g-i~~i~vdS~~el~~i~~~-~~----~~~v~lRv~~~~~~g~~~~~~sRfGi~~-- 188 (419)
|++..|. .+++++++++. + +. +.|||.++++.+.+. +. ..+++|+|+++ ++|.|+.+
T Consensus 83 illa~~~-~~~~~~~l~~l~~~~~~i~-~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDtG---------m~R~Gv~~~~ 151 (389)
T cd06817 83 ILYGLPV-PPSKLPRLAELSKKLGHLR-VMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG---------THRAGVPPES 151 (389)
T ss_pred EEEECCC-CHHHHHHHHHHHhhcCceE-EEECCHHHHHHHHHHHhhccCCceEEEEEEcCC---------CCcCCCCCCh
Confidence 5665565 66888888776 3 54 699999999999876 43 34556666654 49999975
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEEeeCCC--CCCHHHHH----HHHHHHHHHHHHHHH-cCCCcceEEEeCCCCCC
Q 045356 189 EEVAHLLGAAQA--SGLAVIGVAFHIGSE--ATNLDAFH----AAIAEAKTVFETAAR-LGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 189 ee~~~~l~~~~~--~~l~l~Glh~H~gs~--~~~~~~~~----~~~~~~~~l~~~l~~-~g~~~~~~ldiGGG~~~ 255 (419)
+++.++++.+.+ .++++.|+++|+|+. ..+.+... +..+.+.++.+.+++ .| .+..+++ |||.|.
T Consensus 152 ~~~~~l~~~i~~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~vs-~GgTpt 225 (389)
T cd06817 152 EDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQG-DRKLTLS-VGATPT 225 (389)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCEEE-eCCCcc
Confidence 357778887765 589999999999974 23334333 344555566667776 78 6888898 445544
No 49
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.83 E-value=4.9e-19 Score=164.62 Aligned_cols=185 Identities=18% Similarity=0.214 Sum_probs=149.1
Q ss_pred EeHHHHHHHHHHHHHhC---C-CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCC-CCcEEEcCCCCC
Q 045356 56 LDLGVVISLYHQLISNL---P-MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVS-PDRIIYANACKP 129 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~---~-~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~-~~~Ii~~gp~k~ 129 (419)
-+++++++|++.+++.. + ++++++++|++....+++. .+.|+ +|.|++++|+..+++++.. .-.+++.|+. .
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~-~ 80 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREA-IEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHL-Q 80 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHH-HHcCCcccCCCcHHHHHHHHHHccCCCceEEEECcc-c
Confidence 46889999999999887 4 6899999999988888876 47898 9999999999999998543 2234455653 4
Q ss_pred HHHHHHHHH-CCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCC
Q 045356 130 VSHIKYAAS-VGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGL 203 (419)
Q Consensus 130 ~~~l~~a~~-~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l 203 (419)
+++++.+++ .++. +++||+++++.+.+.+ +..+|+|||+++.. .+|||++++++.++++.++. .++
T Consensus 81 ~~~~~~~~~~~~~~-~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~~-------~~R~G~~~~~~~~~~~~i~~~~~l 152 (222)
T cd00635 81 TNKVKYAVRLFDLI-HSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGE-------ESKSGVAPEELEELLEEIAALPNL 152 (222)
T ss_pred cccHHHHHhhCCEE-EEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-------CCCCCCCHHHHHHHHHHHHcCCCC
Confidence 678888887 4654 6999999999887653 45789999998532 39999999999999888876 589
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCcceEEEeCCC
Q 045356 204 AVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARL-GMTKMRVLDIGGG 252 (419)
Q Consensus 204 ~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ldiGGG 252 (419)
++.|+|+|++ +..+++.+.++++.+.++.+.+++. | ..++++|+||.
T Consensus 153 ~~~Gi~sh~s-~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~is~G~t 200 (222)
T cd00635 153 RIRGLMTIAP-LTEDPEEVRPYFRELRELRDELGAKGG-VNLKELSMGMS 200 (222)
T ss_pred cEEEEEEECC-CCCChHHHHHHHHHHHHHHHHHHHhcC-CCCCEEECccc
Confidence 9999999954 4566777888888888888888765 6 68999997776
No 50
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.83 E-value=1.5e-19 Score=167.43 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=149.4
Q ss_pred EeHHHHHHHHHHHHHhC-CCCceeeeeccCCc-HHHHHHHH-Hc-CC-cEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCH
Q 045356 56 LDLGVVISLYHQLISNL-PMVHPYYAVKCNPE-PAILETLA-AL-GS-NFDCASPSEIQAVLALSVSPDRIIYANACKPV 130 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~-~~~~i~~avKan~~-~~v~~~l~-~~-G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (419)
||+++|++|++.+++.. ++.++++++|+|+. ..+++.+. .. |+ +|.|++++|+..++++| .+|++.++ ..+
T Consensus 1 Idl~al~~Ni~~~~~~~~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g---~~il~l~~-~~~ 76 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG---APILVLGP-IPP 76 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT---SEEEEESE-STG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC---CceEEEcC-CCh
Confidence 79999999999999988 56779999999763 45555555 33 67 99999999999999999 56887777 567
Q ss_pred HHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeE
Q 045356 131 SHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGLAV 205 (419)
Q Consensus 131 ~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l~l 205 (419)
++++.++++++. ++|||.++++.+.+.+ +..+|+|+|+++ ++|.|+.++++.++++.++. +++++
T Consensus 77 ~~~~~~~~~~~~-~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG---------~~R~G~~~~~~~~l~~~i~~~~~l~l 146 (218)
T PF01168_consen 77 EELEELVEYNII-PTVDSLEQLEALSKAAKKQGKPLKVHLKVDTG---------MGRLGVRPEELEELAEAIKALPNLRL 146 (218)
T ss_dssp GGHHHHHHTTEE-EEE-SHHHHHHHHHHHHHHTSTEEEEEEBESS---------SSSSSBECHHHHHHHHHHHHTTTEEE
T ss_pred hhHHHHhhCcEE-EEEchhhHHHHHHHHHHHcCCceEEEEeeccc---------ccccCCCHHHHHHHHHHHhcCCCceE
Confidence 899999998664 6999999999998864 578888888886 37999999999999998875 68999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCC
Q 045356 206 IGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGF 253 (419)
Q Consensus 206 ~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~ 253 (419)
.|+++|+++.........++++++.++.+.+++.+ .+..++++|+.-
T Consensus 147 ~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~-~~~~~~s~g~S~ 193 (218)
T PF01168_consen 147 EGLMTHFAHADDPDYTNQEQFERFRELAEALEKAG-IPPPIVSMGNSA 193 (218)
T ss_dssp EEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTT-TTCSEEEEEBHH
T ss_pred eeEeccccccCCHHHHHHHHHHHHHHHHHHHHhcc-CCCceecCCCCc
Confidence 99999999874322233348999999999999888 788899988663
No 51
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.71 E-value=1.6e-15 Score=141.16 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhC---C-CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHH----HHHCC-CCCCcEEEcCCCCC
Q 045356 60 VVISLYHQLISNL---P-MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQA----VLALS-VSPDRIIYANACKP 129 (419)
Q Consensus 60 ~l~~ni~~~~~~~---~-~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~----a~~~G-~~~~~Ii~~gp~k~ 129 (419)
.|.++++...... | ++++++++||+...+|++.+ +.|+ +|.|++++|+.. ++++| + .+.+.|+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~-~~G~~~fgva~~~Ea~~k~~~Lr~~g~~---~~~~lg~~~~ 83 (224)
T cd06824 8 QVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAY-AAGQRHFGENYVQEALEKIEALRDLQDI---EWHFIGPIQS 83 (224)
T ss_pred HHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCCcccCcChHHHHHHHHHHhccCCCe---eEEEEcCchh
Confidence 4455554433332 2 37899999999999999986 8898 999999999996 78775 3 2335577644
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCe
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGLA 204 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l~ 204 (419)
.++...+.++++. .+|||.++++.+.+.+ ...+++|.|+++.+ .+|||++++++.++++.+.. ++++
T Consensus 84 ~~~~~~~~~~~~~-~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~G-------m~R~Gi~~~~~~~~~~~i~~~~~l~ 155 (224)
T cd06824 84 NKTKLIAENFDWV-HSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGE-------DSKSGVAPEDAAELAEAISQLPNLR 155 (224)
T ss_pred hhHHHHHhhCCEE-EecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCCC-------CCCCCCCHHHHHHHHHHHhcCCCCc
Confidence 4557777778864 5999999999998754 34677778887532 39999999888888888765 6899
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCC
Q 045356 205 VIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFA 254 (419)
Q Consensus 205 l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~ 254 (419)
+.|+|+|+++. .+.....+.++.+.++.+.++..+ ..+.++++|+.-+
T Consensus 156 l~Gl~tH~a~~-~~~~~q~~~f~~~~~~~~~l~~~~-~~~~~is~gnS~~ 203 (224)
T cd06824 156 LRGLMAIPAPT-DDEAAQRAAFKRLRQLFDQLKKQY-PDLDTLSMGMSGD 203 (224)
T ss_pred EEEEEEeCCCC-CChHHHHHHHHHHHHHHHHHHhhC-CCCCEEeCcCcHh
Confidence 99999997663 343333344444444456666666 5778999886643
No 52
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.70 E-value=2.6e-15 Score=140.02 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhC----CCCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHH----HHHCCCCCCcEEEcCCCCCH
Q 045356 60 VVISLYHQLISNL----PMVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQA----VLALSVSPDRIIYANACKPV 130 (419)
Q Consensus 60 ~l~~ni~~~~~~~----~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~----a~~~G~~~~~Ii~~gp~k~~ 130 (419)
.|+++++...+.. ++++++.++|+++...+.+ +.+.|+ .|.+++++|+.. +++.| ..+|++.||..++
T Consensus 10 ~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~~~--~~~~~~ig~~q~~ 86 (229)
T TIGR00044 10 DIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQI-AYDAGQRAFGENYVQELVEKIKLLEDLG--KLEWHFIGPLQSN 86 (229)
T ss_pred HHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHH-HHHcCCccccEEcHHHHHHHHHHhcccC--CceEEEECCCcch
Confidence 4444444433332 2589999999999555555 888998 999999999977 55555 2579999998776
Q ss_pred HHHHHHHHCCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeE
Q 045356 131 SHIKYAASVGVNLTTFDSIQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGLAV 205 (419)
Q Consensus 131 ~~l~~a~~~gi~~i~vdS~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l~l 205 (419)
.....+...++. .++||.+.++.|++.+ +..+|+|.|+++.+ .+|.|+.++++.++++.+.. +++++
T Consensus 87 ~~~~~~~~~~l~-~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~g-------m~R~G~~~~e~~~~~~~i~~~~~l~l 158 (229)
T TIGR00044 87 KDRLVVENFDWV-HTIDSLKIAKKLNEQREKLQPPLNVLLQINISDE-------ESKSGIQPEELLELAIQIEELKHLKL 158 (229)
T ss_pred HHHHHhhhcCEE-EEECCHHHHHHHHHHHHhcCCCceEEEEEECCCC-------CCCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 666566666653 5999999999998753 45788899988522 38999999889898888875 68999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--cceEEEeCCC
Q 045356 206 IGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMT--KMRVLDIGGG 252 (419)
Q Consensus 206 ~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~--~~~~ldiGGG 252 (419)
.|+++|+++. .+.+...+.++.+..+.+.++..+ . .+..+++|+.
T Consensus 159 ~Gl~th~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~lS~G~t 205 (229)
T TIGR00044 159 RGLMTIGAPT-DSHEDQEENFRFMKLLFWQIKQDS-PFGTIDTLSMGMS 205 (229)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHHHHHHHHhhc-CCCCCCEEeeeCc
Confidence 9999999875 456666667777777777777655 3 5677886654
No 53
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.59 E-value=3.1e-14 Score=139.12 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=144.9
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEE
Q 045356 47 QELDEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 47 ~~~~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
..+.||++++|++++.+|+.+++++.. ++++.+++|+++.+++.+.+.+.|. |+.|+++.|++....+|+ ++|++
T Consensus 14 ~~l~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl~ 91 (368)
T COG3616 14 ADLDTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDILL 91 (368)
T ss_pred cCCCCchhhhhHHHHhhhHHHHHHhccccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCc--cceEE
Confidence 478999999999999999999999874 7899999999999999999999997 999999999999999998 68999
Q ss_pred cCCCCCHHHHHHHHH--CCCc--EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHH-HHHHHHH
Q 045356 124 ANACKPVSHIKYAAS--VGVN--LTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEV-AHLLGAA 198 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~--~gi~--~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~-~~~l~~~ 198 (419)
..|......++...+ .... .+.+||.++++.+++...+....+||.++.+.| .+|.|+...+. ..+.+.+
T Consensus 92 a~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~G-----~~R~Gv~t~~~~~~La~~~ 166 (368)
T COG3616 92 AYPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDSG-----LHRSGVRTPEVAEALAAEI 166 (368)
T ss_pred ecCCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCCC-----CCccCcCChHHHHHHHHhh
Confidence 988776666664433 2233 247999999999998765555556666654432 48999966444 4444555
Q ss_pred Hh-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC
Q 045356 199 QA-SGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG 252 (419)
Q Consensus 199 ~~-~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG 252 (419)
.. .++++.|+++|-|+............+ ......++..+ ..+.++..||-
T Consensus 167 ~~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~--~~a~~~~~~~g-~~~~~vt~ggt 218 (368)
T COG3616 167 AAAPGLRLAGVMTYPGHSYGPGSEVAAAER--VHAAALLGAVG-RAAPVLTSGGT 218 (368)
T ss_pred hhccceEEeeeecccccccCCcchhhhhhh--hhHHHHhcccC-CccceeecCCC
Confidence 44 689999999998765322221111111 22333455667 68888984444
No 54
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.49 E-value=6.2e-12 Score=117.76 Aligned_cols=297 Identities=15% Similarity=0.187 Sum_probs=190.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCC-cHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNP-EPAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~-~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
.|-+.+|++.|++|.+.+++.+. +++++++.|.-. ++.+++.+.+.|+ ++.-+-.+|+..++++|++..--++-.|
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCcEEEeHHHHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCceEeecc
Confidence 47788999999999999998774 899999999875 8999999999999 8899999999999999997643444457
Q ss_pred CCCHHHHHHHHHCCCcEEEecCHHHHHHHHhH----CCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-c
Q 045356 127 CKPVSHIKYAASVGVNLTTFDSIQELDKIRKW----HPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-S 201 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~----~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~ 201 (419)
+ .++++..++. ++++.+.+++-++++.+. ++..+|+|+|..+.- ..+-.|+..+++++.++.+.. +
T Consensus 83 ~--~sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dl------reG~~~~~~~~l~~~V~eI~~lk 153 (353)
T COG3457 83 C--MSEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDL------REGQWGFLIEDLEETVEEIQQLK 153 (353)
T ss_pred c--HHHHHHHHHh-cCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEcccc------cCcchhhHHHHHHHHHHHHhcCC
Confidence 5 4688888765 566678888888888765 567899999997521 013333555888888888876 5
Q ss_pred CCeEEEEEEeeCCCC---CCHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 045356 202 GLAVIGVAFHIGSEA---TNLDAFHAAIAEAKTVFETAAR-LGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNE 277 (419)
Q Consensus 202 ~l~l~Glh~H~gs~~---~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~ 277 (419)
|+++.||-||+++.. ..++.+ ..+.+..+.+++ .| ++++++| ||.-.+-+.+... ..+
T Consensus 154 Gi~~vGlgTnF~Cfg~v~PTp~n~----~~ll~~~~~lE~~~G-i~l~~vs-agnats~~~L~~~----------~~~-- 215 (353)
T COG3457 154 GIHLVGLGTNFPCFGDVLPTPENL----ESLLQGKKKLEASSG-IQLKQVS-AGNATSLTLLPMG----------SLP-- 215 (353)
T ss_pred CceEEeeecccccccCcCCCcccH----HHHHHHHHHHHHhcC-ceeEEec-CCCccchhhhhcc----------ccc--
Confidence 999999999998752 233333 233334445554 59 8999998 4443331111000 000
Q ss_pred cCCCccEEEEcCcch--------------hcccceEEEEEEEEEEEeCCceEEEEecCCC--CCcchhhhHHHH-hhcce
Q 045356 278 TAAGHLSVISEPGRF--------------LADTAFTLATKVIGKRVRDELREYWINDGKY--GSFGWLSSEEVI-AKCGA 340 (419)
Q Consensus 278 ~~~~~~~li~EpGR~--------------lv~~a~~lvt~V~~~k~~~~~~~~~i~dg~~--~~~~~~~~~~~~-~~~~~ 340 (419)
+.. ..|||.+ +-.+|+.+.+.|+.+|.+. .|-+-.+-| ..|...+...+. .+.+.
T Consensus 216 -~in----hlriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~---s~~ige~f~~~~~f~d~g~~~rAi~aig~ 287 (353)
T COG3457 216 -GIN----HLRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKP---SYPIGEGFYRRSGFVDAGIRLRAIAAIGE 287 (353)
T ss_pred -ccc----cccccceeecccccchhcccccccchhhhhhhhhhccCCC---ceeecccccccccccccchhHHHHHHhhh
Confidence 000 1223333 3356999999999998763 233322211 122222210000 00000
Q ss_pred --eeecccCCCCCCceeeEEeccCCCCCCccccCCC-CCCCCCCCEEEEcC
Q 045356 341 --HILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQ-LPELEVSDWLVFSD 388 (419)
Q Consensus 341 --~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~lv~~~ 388 (419)
.++.+. .+-.+..++.|.+ +|.+.-++. .-.+++||.+.|..
T Consensus 288 ~dv~~~~~---spiD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~ 332 (353)
T COG3457 288 QDVDVVNL---SPIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRL 332 (353)
T ss_pred hcCCcCCC---ccHhhhhhhhccc---CCcEEEEecccccceeeeEEEEEe
Confidence 011111 1122346777875 577665554 22789999999883
No 55
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=99.36 E-value=1.6e-10 Score=107.11 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=127.6
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCC-CCcEEEcCCCCCHHHHHHHHH-CCCcEE-EecCH
Q 045356 74 MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVS-PDRIIYANACKPVSHIKYAAS-VGVNLT-TFDSI 149 (419)
Q Consensus 74 ~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~l~~a~~-~gi~~i-~vdS~ 149 (419)
.+++..+.|..+...|.. +.+.|+ .|+=.-++|+..-.+. ++ .-+++|.|+.. .+.++.+++ ..+.++ +|||+
T Consensus 23 ~v~LvaVsK~~~~~~i~~-~~~~G~~~fGENrvQe~~~K~~~-l~~~i~wHfIG~LQ-~NK~k~i~~~~~~~~ihsvDs~ 99 (227)
T cd06822 23 KPRLVAVSKTKPAELIKE-AYDAGQRHFGENYVQELIEKAPD-LPIDIKWHFIGHLQ-SNKVKKLLKVPNLYMVETVDSE 99 (227)
T ss_pred CcEEEEEECCCCHHHHHH-HHHcCCccccCcHHHHHHHHHHh-ccCCceEEEECCCc-hhhHHHHhccccccEEEecCCH
Confidence 589999999998876655 667788 9999999998764443 22 13578899975 488999875 234444 99999
Q ss_pred HHHHHHHhH------CCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-h-cCCeEEEEEEeeCCCCCCHHH
Q 045356 150 QELDKIRKW------HPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQ-A-SGLAVIGVAFHIGSEATNLDA 221 (419)
Q Consensus 150 ~el~~i~~~------~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~-~-~~l~l~Glh~H~gs~~~~~~~ 221 (419)
+.++.|++. .+..+|+|.||++.+ .+|.|++++++.++++.+. . ++|++.|||+|.+......+.
T Consensus 100 ~la~~L~~~a~~~~~~~~~~VlIqVn~g~e-------~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~~~~~~ 172 (227)
T cd06822 100 KLADKLNKAWEKLGEREPLKVMVQVNTSGE-------ESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSG 172 (227)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCC-------CCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCCCcHHH
Confidence 999998874 345799999998754 2899999999999999885 6 699999999997764321244
Q ss_pred HHHHHHHHHHHHHHHHHc-CCCc--ceEEEeCCC
Q 045356 222 FHAAIAEAKTVFETAARL-GMTK--MRVLDIGGG 252 (419)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~-g~~~--~~~ldiGGG 252 (419)
.++.++.+.++++.++.. | .. +..+++|+.
T Consensus 173 ~r~~f~~l~~l~~~L~~~~g-~~~~~~~lSmGmS 205 (227)
T cd06822 173 PNPDFLCLVDCRKKVCEKLG-INPDDLELSMGMS 205 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCCCCEEEeccc
Confidence 467778888888888765 5 34 678887765
No 56
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=99.25 E-value=1.3e-09 Score=98.75 Aligned_cols=180 Identities=16% Similarity=0.207 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhC---C-CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCC--CcEEEcCCCCCHH
Q 045356 59 GVVISLYHQLISNL---P-MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSP--DRIIYANACKPVS 131 (419)
Q Consensus 59 ~~l~~ni~~~~~~~---~-~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~--~~Ii~~gp~k~~~ 131 (419)
..+++++++-.... + .+++.++.|+-+... ++.+.++|+ .|+-.-.+|+..=.++--+. =.++|.|+..+ +
T Consensus 8 ~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~-I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQs-N 85 (228)
T COG0325 8 AAVRERIAAAAERAGRNPGSVTLVAVSKTVPAED-IREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQS-N 85 (228)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHH-HHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEechhhh-h
Confidence 34555555444433 1 489999999998765 456778998 99999999998766652221 25778899764 8
Q ss_pred HHHHHHHCCCcEE-EecCHHHHHHHHhHC---C-CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeE
Q 045356 132 HIKYAASVGVNLT-TFDSIQELDKIRKWH---P-KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA-SGLAV 205 (419)
Q Consensus 132 ~l~~a~~~gi~~i-~vdS~~el~~i~~~~---~-~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~-~~l~l 205 (419)
..+.++++ +..+ ++|++.-+++|++.+ + ..++.|.||+..+ .+|-|++++++.+++..++. ++|++
T Consensus 86 K~k~v~~~-~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E-------~sK~G~~~~e~~~~~~~~~~~~~L~l 157 (228)
T COG0325 86 KVKLVAEN-FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGE-------ESKSGVPPEELDELAQEVQELPNLEL 157 (228)
T ss_pred HHHHHHhh-cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCc-------cccCCCCHHHHHHHHHHHHhCCCCeE
Confidence 88888874 5544 899999999996643 2 5899999999755 49999999999999999876 69999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeC
Q 045356 206 IGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIG 250 (419)
Q Consensus 206 ~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiG 250 (419)
.|||+-. ....|++....+++.++++++.+.+.. .+++.|++|
T Consensus 158 ~GLM~ip-p~~~d~~~~~~~F~~l~~l~~~l~~~~-~~~~~LSMG 200 (228)
T COG0325 158 RGLMTIP-PLTDDPEEIFAVFRKLRKLFDELKAKY-PPIDELSMG 200 (228)
T ss_pred eEEEeeC-CCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCCeecCc
Confidence 9999984 555688888889999999998888877 578888865
No 57
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=97.93 E-value=0.00022 Score=63.48 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=94.4
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCC-CcEEEcCCCCCHHHHHHHHH-CCCcEE-EecCH
Q 045356 74 MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSEIQAVLALSVSP-DRIIYANACKPVSHIKYAAS-VGVNLT-TFDSI 149 (419)
Q Consensus 74 ~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~l~~a~~-~gi~~i-~vdS~ 149 (419)
.+++.++.|+.+...|. .+.++|- .|+-.-++|+..-... +++ =+++|.|...+ +.++..+. -+...+ +|||+
T Consensus 31 ~~rlvaVSKtKPa~~i~-~~Y~~GqR~FGENYVQEl~eKap~-lp~DI~WHFIG~lQs-nK~kkl~svpnL~~vetVDse 107 (244)
T KOG3157|consen 31 AVRLVAVSKTKPASLII-EAYDAGQRHFGENYVQELIEKAPL-LPDDIKWHFIGHLQS-NKCKKLLSVPNLYSVETVDSE 107 (244)
T ss_pred ceEEEEeecCCcHHHHH-HHHHcCcChhhHHHHHHHHHhccc-Ccccceeeeechhhh-cccchhccCCceEEEEecchH
Confidence 58899999999986544 5667776 8988889998753322 222 24667787554 56666554 222223 68888
Q ss_pred HHHHHHHhH----CC--CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEEEEeeCCC
Q 045356 150 QELDKIRKW----HP--KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA--SGLAVIGVAFHIGSE 215 (419)
Q Consensus 150 ~el~~i~~~----~~--~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~--~~l~l~Glh~H~gs~ 215 (419)
..+..+.+. .+ ..+|.+.||+..+ .+|+|+.+.++.++++.++. .+|.+.|||+= |+.
T Consensus 108 K~A~~ld~a~~k~g~~~PL~V~VQvNTSGE-------d~K~Giepse~~~l~~~i~~~c~nL~f~GlMTI-Gs~ 173 (244)
T KOG3157|consen 108 KKARKLDSAWSKLGPDNPLKVLVQVNTSGE-------DSKSGIEPSEAPELAEHIKSECKNLKFSGLMTI-GSF 173 (244)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEeecCCc-------cccCCCChhhhHHHHHHHHHhCCcceeeeeEEe-ccc
Confidence 888877653 34 5788899998654 49999999999999998875 59999999985 553
No 58
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=97.82 E-value=1.4e-05 Score=67.64 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=55.7
Q ss_pred ceEEEEEEEEEEEeCC------ceEEEEecCCCCCcchhhhHHHHhhcceeeecccCCCCCCceeeEEeccCCCCCCccc
Q 045356 297 AFTLATKVIGKRVRDE------LREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVF 370 (419)
Q Consensus 297 a~~lvt~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~ 370 (419)
++.+.++|+.+|...+ +..|.....++.+..+++|.+.. ++.+.++......+++++++|.+|| |+++
T Consensus 1 v~sl~a~i~~v~~v~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~----~r~~~~~~~v~i~G~~~pivG~v~M--D~~~ 74 (129)
T PF00842_consen 1 VMSLKARIIQVREVPKGETVGYGRTYRAPRDTRIAVVPIGYADGF----PRALSNGGYVLINGKRCPIVGRVCM--DMTM 74 (129)
T ss_dssp -EEEEEEEEEEEEE-TT-EESGGGSEE-SSSEEEEEES--GGGTG----GGGGTTTEEEEETTEEEEEES---S--S-EE
T ss_pred CEEEEEEEEEEEEeCCCCCCcCCCEEECCCCeEEEEEEEEeeCCc----CcccCCCcEEEECCEEEEEEEEEEe--eEEE
Confidence 4678999999998632 35677776777777888886655 4444443333357889999999999 9999
Q ss_pred cCCC-C-CCCCCCCEEEEcCC
Q 045356 371 TGHQ-L-PELEVSDWLVFSDM 389 (419)
Q Consensus 371 ~~~~-l-p~l~~GD~lv~~~~ 389 (419)
.+++ . |++++||.+.+.+-
T Consensus 75 vdvt~~~~~v~~GD~V~l~G~ 95 (129)
T PF00842_consen 75 VDVTDIEPDVKVGDEVTLFGR 95 (129)
T ss_dssp EEESTSTST--TT-EEEEEEC
T ss_pred EEcCCCCCCCCCCCEEEEECC
Confidence 8886 5 68999999999864
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.59 E-value=5.6 Score=37.86 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.2
Q ss_pred CCC-CHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 184 FGA-NPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 184 fGi-~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
+|+ .|+++.++++.+++ .++. .|+|+|
T Consensus 164 ~G~~~P~~v~~~~~~~~~~~~~~-i~~H~H 192 (262)
T cd07948 164 VGIATPRQVYELVRTLRGVVSCD-IEFHGH 192 (262)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCe-EEEEEC
Confidence 443 67888888887765 3544 478887
No 60
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.84 E-value=17 Score=35.77 Aligned_cols=139 Identities=21% Similarity=0.322 Sum_probs=78.4
Q ss_pred cEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 045356 99 NFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARY 178 (419)
Q Consensus 99 g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~ 178 (419)
|+|++++.|++ ++|.. .+...++..+.++...++|++. |.|||-.+..
T Consensus 3 GaDiS~~~~~E---~~G~~----f~~~~G~~~d~~~ilk~~G~N~--------------------vRlRvwv~P~----- 50 (332)
T PF07745_consen 3 GADISSLPEME---AAGVK----FYDENGQEKDLFQILKDHGVNA--------------------VRLRVWVNPY----- 50 (332)
T ss_dssp EEE-TTHHHHH---HTT-------B-TTSSB--HHHHHHHTT--E--------------------EEEEE-SS-T-----
T ss_pred ceeHHHHHHHH---HcCCe----EECCCCCCCCHHHHHHhcCCCe--------------------EEEEeccCCc-----
Confidence 78999988875 45642 2222234555666666788874 4456654321
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHhcCCeEEEEEEeeCC-------CC-------CCHHHHH-HHHHHHHHHHHHHHHcCCC
Q 045356 179 PLDSKFG-ANPEEVAHLLGAAQASGLAVIGVAFHIGS-------EA-------TNLDAFH-AAIAEAKTVFETAARLGMT 242 (419)
Q Consensus 179 ~~~sRfG-i~~ee~~~~l~~~~~~~l~l~Glh~H~gs-------~~-------~~~~~~~-~~~~~~~~l~~~l~~~g~~ 242 (419)
. -| .+.+.+.++++++++.|+.+. |-||.+- |. .+.+... +.......+++.+++.| .
T Consensus 51 ---~-~g~~~~~~~~~~akrak~~Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G-~ 124 (332)
T PF07745_consen 51 ---D-GGYNDLEDVIALAKRAKAAGMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAG-V 124 (332)
T ss_dssp ---T-TTTTSHHHHHHHHHHHHHTT-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ---c-cccCCHHHHHHHHHHHHHCCCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 1 33 366888889999999999887 8899732 21 1223332 33445567788889999 8
Q ss_pred cceEEEeCCCCCC--------CCCHHHHHHHHHH---HHHhhCC
Q 045356 243 KMRVLDIGGGFAC--------NPGFHEAASIIKD---AIQTYFP 275 (419)
Q Consensus 243 ~~~~ldiGGG~~~--------~~~~~~~~~~i~~---~l~~~~~ 275 (419)
.++++.+|--... ..+++.++..++. ++++..+
T Consensus 125 ~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p 168 (332)
T PF07745_consen 125 TPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP 168 (332)
T ss_dssp -ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS
T ss_pred CccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999975332 3566777766654 4555444
No 61
>PRK01060 endonuclease IV; Provisional
Probab=87.93 E-value=7.5 Score=36.99 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHH
Q 045356 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGS----EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHE 261 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~ 261 (419)
++.+++.++-+.+++.++.+.++..|..- ...+++.....++.+++.++.+++.| .+.=+++.|..... ...++
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lg-a~~vv~h~G~~~~~-~~~~~ 121 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALG-AKLLVFHPGSHLGD-IDEED 121 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEcCCcCCCC-CcHHH
Confidence 46677777777777888987667777532 12456666777888888888888888 45434443432222 22233
Q ss_pred HHHHHHHHHHhhCCCccCCCccEEEEcC
Q 045356 262 AASIIKDAIQTYFPNETAAGHLSVISEP 289 (419)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~li~Ep 289 (419)
..+.+.+.+++..... ..++|.+|+
T Consensus 122 ~~~~~~e~l~~l~~~~---~gv~l~iEn 146 (281)
T PRK01060 122 CLARIAESLNEALDKT---QGVTIVLEN 146 (281)
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEEec
Confidence 4444555555443321 138899997
No 62
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.94 E-value=20 Score=33.61 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCcEEEEeHHHHHHHHHHHHHh-CCCCceeeeecc------CCcHHHHHHHHHcC--CcE--EEcC-HHHHHHHHHCCCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISN-LPMVHPYYAVKC------NPEPAILETLAALG--SNF--DCAS-PSEIQAVLALSVS 117 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~-~~~~~i~~avKa------n~~~~v~~~l~~~G--~g~--~VaS-~~E~~~a~~~G~~ 117 (419)
+++...++.+...+-++.+.+. ++.+++-+.... .....+++.+.+.+ ..+ -+.+ ..+++.+.++|++
T Consensus 10 q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~ 89 (265)
T cd03174 10 QSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVD 89 (265)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcC
Confidence 3444444555555555555543 222333333322 22345666666654 322 2222 7778888888864
Q ss_pred CCcEEEcCCC--------CC--------HHHHHHHHHCCCcE-EEe-------cCHHHHHHHHhHCCCCeE-EEEEecCC
Q 045356 118 PDRIIYANAC--------KP--------VSHIKYAASVGVNL-TTF-------DSIQELDKIRKWHPKCEL-LIRIKSPV 172 (419)
Q Consensus 118 ~~~Ii~~gp~--------k~--------~~~l~~a~~~gi~~-i~v-------dS~~el~~i~~~~~~~~v-~lRv~~~~ 172 (419)
.=+|.+.+.. ++ .+.++.+.+.|..+ +++ .+.+++..+.+......+ .+.+..
T Consensus 90 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D-- 167 (265)
T cd03174 90 EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD-- 167 (265)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech--
Confidence 3233332220 11 12234445566542 233 445555554443221111 122221
Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 173 DGGARYPLDSKFG-ANPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 173 ~~g~~~~~~sRfG-i~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
+ .| +.|+++.++++.+++ ..-...|+|+|
T Consensus 168 ---------t-~G~~~P~~v~~li~~l~~~~~~~~~~~H~H 198 (265)
T cd03174 168 ---------T-VGLATPEEVAELVKALREALPDVPLGLHTH 198 (265)
T ss_pred ---------h-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1 23 588899999988765 33246678888
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=84.86 E-value=8.5 Score=34.29 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeeCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC---CCCCCC
Q 045356 189 EEVAHLLGAAQASGLAVIGVAFHIGSEA-------TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG---FACNPG 258 (419)
Q Consensus 189 ee~~~~l~~~~~~~l~l~Glh~H~gs~~-------~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG---~~~~~~ 258 (419)
+++.++.+.+++.++.+.+++++..... ...+ ..+.++.+.+.++.++.+| .+. +.+..| ......
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg-~~~--i~~~~g~~~~~~~~~ 102 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLG-AKY--IVVHSGRYPSGPEDD 102 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHT-BSE--EEEECTTESSSTTSS
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhC-CCc--eeecCcccccccCCC
Confidence 4566777778889999999998876543 1223 5566778888888888887 444 444444 333233
Q ss_pred HHHHHHHHHHHHHh---hCCCccCCCccEEEEcCcchhc
Q 045356 259 FHEAASIIKDAIQT---YFPNETAAGHLSVISEPGRFLA 294 (419)
Q Consensus 259 ~~~~~~~i~~~l~~---~~~~~~~~~~~~li~EpGR~lv 294 (419)
.+...+.+.+.+++ +..+. + .++.+||.....
T Consensus 103 ~~~~~~~~~~~l~~l~~~a~~~-g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 103 TEENWERLAENLRELAEIAEEY-G---VRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---SEEEEE-SSSSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-c---ceEEEecccCcc
Confidence 33322333333222 22221 3 789999876544
No 64
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=78.64 E-value=31 Score=35.93 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCcEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc--------------------
Q 045356 50 DEPFYVLDLG-----VVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA-------------------- 103 (419)
Q Consensus 50 ~tP~~v~d~~-----~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va-------------------- 103 (419)
+-..+++|.. .+.+.++.+++.+|+..+. ++.-...+-++.+.+.|+ ++.|.
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi--~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~ 317 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQII--AGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQI 317 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEE--EeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHH
Confidence 3346677754 6777888888887765443 466677888888888887 66652
Q ss_pred -CHHHHHHHH-HCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 104 -SPSEIQAVL-ALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 104 -S~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
++.|+..+. +.|+ .|+..|.+.++.++..|+..|+..+.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~---~viadGGi~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 318 TAIADAAEAAKKYGI---PVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred HHHHHHHHHhccCCC---eEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence 333443332 2343 477788888899999999888877677764
No 65
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=76.89 E-value=55 Score=31.03 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=17.9
Q ss_pred CCC-CHHHHHHHHHHHHhc-CC--eEEEEEEe
Q 045356 184 FGA-NPEEVAHLLGAAQAS-GL--AVIGVAFH 211 (419)
Q Consensus 184 fGi-~~ee~~~~l~~~~~~-~l--~l~Glh~H 211 (419)
+|. .|+++.++++.+++. +- ...|+|+|
T Consensus 166 ~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~H 197 (268)
T cd07940 166 VGYLTPEEFGELIKKLKENVPNIKVPISVHCH 197 (268)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceeEEEEec
Confidence 443 678888888877653 31 24477777
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=76.79 E-value=83 Score=31.26 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCC-cEEEcC
Q 045356 87 PAILETLAALGS-NFDCAS 104 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS 104 (419)
..+++.|.+.|+ .+||.|
T Consensus 71 i~ia~~L~~~GV~~IEvGs 89 (347)
T PLN02746 71 VELIQRLVSSGLPVVEATS 89 (347)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 456666666666 566654
No 67
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=76.35 E-value=70 Score=30.16 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=19.9
Q ss_pred CC-CCHHHHHHHHHHHHh-cCCeEEEEEEee
Q 045356 184 FG-ANPEEVAHLLGAAQA-SGLAVIGVAFHI 212 (419)
Q Consensus 184 fG-i~~ee~~~~l~~~~~-~~l~l~Glh~H~ 212 (419)
+| +.|+++.++++.+++ .++ -.|+|+|-
T Consensus 162 ~G~~~P~~v~~lv~~l~~~~~~-~l~~H~Hn 191 (259)
T cd07939 162 VGILDPFTTYELIRRLRAATDL-PLEFHAHN 191 (259)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 44 478888888888765 354 46888883
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.33 E-value=72 Score=30.32 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=19.3
Q ss_pred CC-CCHHHHHHHHHHHHh-cC--CeEEEEEEe
Q 045356 184 FG-ANPEEVAHLLGAAQA-SG--LAVIGVAFH 211 (419)
Q Consensus 184 fG-i~~ee~~~~l~~~~~-~~--l~l~Glh~H 211 (419)
+| +.|+++.++++.+++ .+ + -.|+|+|
T Consensus 161 ~G~~~P~~v~~lv~~l~~~~~~~~-~i~~H~H 191 (266)
T cd07944 161 FGSMYPEDIKRIISLLRSNLDKDI-KLGFHAH 191 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence 45 478889888888765 33 4 4478888
No 69
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=75.92 E-value=13 Score=33.45 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=42.6
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCCCcEEEc--C---CC--C--CHHHHHHHHHCCCcEE---EecCHHH
Q 045356 86 EPAILETLAALGS--NFDCASPSEIQAVLALSVSPDRIIYA--N---AC--K--PVSHIKYAASVGVNLT---TFDSIQE 151 (419)
Q Consensus 86 ~~~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~--g---p~--k--~~~~l~~a~~~gi~~i---~vdS~~e 151 (419)
..++++.+++.+. -.||+|.+|+..+.++|++ -|--+ | .. . +-+.++...+.++.++ .+.+.++
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D--~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~ 158 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAELGFD--IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQ 158 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-S--EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHH
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCC--EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHH
Confidence 4678888888875 7999999999999999973 22211 1 10 1 1123344455555433 3577777
Q ss_pred HHHHHhHC
Q 045356 152 LDKIRKWH 159 (419)
Q Consensus 152 l~~i~~~~ 159 (419)
+.+..+.+
T Consensus 159 a~~al~~G 166 (192)
T PF04131_consen 159 AAKALELG 166 (192)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 77776654
No 70
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=75.67 E-value=51 Score=31.52 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhc-CCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQAS-GLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~-~l~l~Glh~H 211 (419)
..|.++.++++.+++. .-.-.|+|+|
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~~i~~H~H 201 (274)
T cd07938 175 ATPAQVRRLLEAVLERFPDEKLALHFH 201 (274)
T ss_pred cCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 3677777777776543 1134567777
No 71
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=75.27 E-value=93 Score=31.07 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
..|+++.++++.+++ .+ ...|+|+|
T Consensus 167 ~~P~~v~~li~~l~~~~~-~~l~~H~H 192 (363)
T TIGR02090 167 LTPQKMEELIKKLKENVK-LPISVHCH 192 (363)
T ss_pred cCHHHHHHHHHHHhcccC-ceEEEEec
Confidence 478889999988765 34 34678888
No 72
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.82 E-value=81 Score=32.50 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCcEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc--------C----------
Q 045356 49 LDEPFYVLDL-----GVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA--------S---------- 104 (419)
Q Consensus 49 ~~tP~~v~d~-----~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va--------S---------- 104 (419)
.+--.+++|. ..+.+.++++++.+|+..+. ++.-..++-++.+.+.|+ .+.|. +
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi--~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDII--AGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEE--EEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccH
Confidence 3555677777 56778888888888765444 466677888888888887 55543 1
Q ss_pred ---HHHHHHH-HHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 105 ---PSEIQAV-LALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 105 ---~~E~~~a-~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
..|+..+ .+.|+ .|+-.|.++++.++..|+..|+..+.+.+.
T Consensus 313 ~~~i~~~~~~~~~~~v---pviadGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGI---PVIADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred HHHHHHHHHHHhhcCC---eEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 1334332 23454 477788889999999999999887777764
No 73
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=74.76 E-value=66 Score=31.56 Aligned_cols=95 Identities=16% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCCcEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-cEEEc------------------
Q 045356 49 LDEPFYVLDL-----GVVISLYHQLISNLPMVHPYYAVKCN-PEPAILETLAALGS-NFDCA------------------ 103 (419)
Q Consensus 49 ~~tP~~v~d~-----~~l~~ni~~~~~~~~~~~i~~avKan-~~~~v~~~l~~~G~-g~~Va------------------ 103 (419)
..+-+.++|. ..+.+.++.+++.+|.. ..+|-| ...+.++.+.+.|+ ++.|+
T Consensus 107 ~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~---~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~ 183 (321)
T TIGR01306 107 LTPEYITIDIAHGHSNSVINMIKHIKTHLPDS---FVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG 183 (321)
T ss_pred CCCCEEEEeCccCchHHHHHHHHHHHHhCCCC---EEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCC
Confidence 3467889999 88999999999988753 234443 47888999999998 77776
Q ss_pred --CHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecC
Q 045356 104 --SPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 104 --S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS 148 (419)
.+.-+..+.++ .. -.|+..|.+.+..++-+|+..|...+.+.+
T Consensus 184 ~~~l~ai~ev~~a-~~-~pVIadGGIr~~~Di~KALa~GAd~Vmig~ 228 (321)
T TIGR01306 184 GWQLAALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGASMVMIGS 228 (321)
T ss_pred chHHHHHHHHHHh-cC-CeEEEECCcCcHHHHHHHHHcCCCEEeech
Confidence 11112222222 12 358888999999999999999987666653
No 74
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=73.68 E-value=21 Score=32.90 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc--CCCCCHHHHHHHHHCCCcEEEec---CHHHHHHHHhHCC
Q 045356 87 PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA--NACKPVSHIKYAASVGVNLTTFD---SIQELDKIRKWHP 160 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~--gp~k~~~~l~~a~~~gi~~i~vd---S~~el~~i~~~~~ 160 (419)
...++.+.+.|+ ++-|++++.+..+++.|... .|+.. -...+...+++..+.|+..+++. |++|+..|.+..+
T Consensus 5 ~~~l~~l~~~g~dgi~v~~~g~~~~~k~~~~~~-~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~ 83 (233)
T PF01136_consen 5 EKYLDKLKELGVDGILVSNPGLLELLKELGPDL-KIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAENSP 83 (233)
T ss_pred HHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCC-cEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhCC
Confidence 356777889998 99999999999999996533 45543 33457889999999998766665 5667777776654
Q ss_pred CCeEEEEEe
Q 045356 161 KCELLIRIK 169 (419)
Q Consensus 161 ~~~v~lRv~ 169 (419)
..++-+-|+
T Consensus 84 ~~~~Ev~v~ 92 (233)
T PF01136_consen 84 GVPLEVIVH 92 (233)
T ss_pred CCeEEEEEe
Confidence 334444444
No 75
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.14 E-value=48 Score=31.48 Aligned_cols=130 Identities=11% Similarity=0.147 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccC--CcHHHHHHHHHcCCcEEEcC----
Q 045356 33 GGLLEFMESIILKRQELDEPFYV--LDLGVVISLYHQLISNLPMVHPYYAVKCN--PEPAILETLAALGSNFDCAS---- 104 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~tP~~v--~d~~~l~~ni~~~~~~~~~~~i~~avKan--~~~~v~~~l~~~G~g~~VaS---- 104 (419)
+.+..+++.+.+ ..+.|+-+ .+.+.++.-++.+ ++.-+.-.+..- ..+.+++++.+.|+.+-+-.
T Consensus 55 ~r~~~~v~~l~~---~~~~plsIDT~~~~v~eaaL~~~----~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~ 127 (261)
T PRK07535 55 ETMEWLVETVQE---VVDVPLCIDSPNPAAIEAGLKVA----KGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDT 127 (261)
T ss_pred HHHHHHHHHHHH---hCCCCEEEeCCCHHHHHHHHHhC----CCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCC
Confidence 345566666542 24677533 4444555544433 355567777773 36788888888888655422
Q ss_pred ---------HHH----HHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecC
Q 045356 105 ---------PSE----IQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 105 ---------~~E----~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
..+ +..+.++|+++++|++-...-+ +..+.. -+.++++.++.+.+..|..++.+-++
T Consensus 128 g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~-------~~~~~~-~~~~~l~~i~~l~~~~pg~p~l~G~S-- 197 (261)
T PRK07535 128 GIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLP-------LSAAQD-AGPEVLETIRRIKELYPKVHTTCGLS-- 197 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCc-------ccCChH-HHHHHHHHHHHHHHhCCCCCEEEEeC--
Confidence 223 2336678998889988532221 000000 02344555666666555444544443
Q ss_pred CCCCCCCCCCCCCCCCH
Q 045356 172 VDGGARYPLDSKFGANP 188 (419)
Q Consensus 172 ~~~g~~~~~~sRfGi~~ 188 (419)
.-.||++.
T Consensus 198 ---------n~Sfglp~ 205 (261)
T PRK07535 198 ---------NISFGLPN 205 (261)
T ss_pred ---------CCccCCcc
Confidence 24688843
No 76
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=71.95 E-value=90 Score=29.45 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=75.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHh-CCCCceeeee------------ccCCcHHHHHHHHHc--CCcEE------EcCHHHHH
Q 045356 51 EPFYVLDLGVVISLYHQLISN-LPMVHPYYAV------------KCNPEPAILETLAAL--GSNFD------CASPSEIQ 109 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~-~~~~~i~~av------------Kan~~~~v~~~l~~~--G~g~~------VaS~~E~~ 109 (419)
++-..++.+...+-++.+.+. +..+++-|.. +.+ ..+.++.+.+. +..+. .+...+++
T Consensus 14 ~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 14 AVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred cCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 445567777777777776654 2234444321 122 23455555432 33322 44677788
Q ss_pred HHHHCCCCCCcEEEcCCCCC----HHHHHHHHHCCCcE-EEe-----cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCC
Q 045356 110 AVLALSVSPDRIIYANACKP----VSHIKYAASVGVNL-TTF-----DSIQELDKIRKWHPKCELLIRIKSPVDGGARYP 179 (419)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~----~~~l~~a~~~gi~~-i~v-----dS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~ 179 (419)
.+.++|++.=+|.+ +... .+.++.|.+.|... +++ .+.+++..+.+......+- +|...
T Consensus 93 ~a~~~g~~~iri~~--~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d-~i~l~-------- 161 (263)
T cd07943 93 MAADLGVDVVRVAT--HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD-CVYVT-------- 161 (263)
T ss_pred HHHHcCCCEEEEEe--chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC-EEEEc--------
Confidence 88888874323322 2211 22334444556532 233 2455555444432111110 23321
Q ss_pred CCCCCC-CCHHHHHHHHHHHHhc-CCeEEEEEEe
Q 045356 180 LDSKFG-ANPEEVAHLLGAAQAS-GLAVIGVAFH 211 (419)
Q Consensus 180 ~~sRfG-i~~ee~~~~l~~~~~~-~l~l~Glh~H 211 (419)
--+| +.|+++.++++.+++. +....|+|+|
T Consensus 162 --DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 162 --DSAGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred --CCCCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 2245 4788999999988763 5446788888
No 77
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=71.16 E-value=11 Score=37.17 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=18.9
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
.|+-+|.+.+.++....+..|+..+.+.
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 4666777777788877777776544443
No 78
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.06 E-value=1.2e+02 Score=30.34 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEee
Q 045356 187 NPEEVAHLLGAAQASGLAVIGVAFHI 212 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~~l~l~Glh~H~ 212 (419)
+++.+.++++.+.+.+..-..+.=..
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~DT~ 164 (363)
T TIGR02090 139 DIDFLIKVFKRAEEAGADRINIADTV 164 (363)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 55556666665555555444444333
No 79
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.93 E-value=1.2e+02 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=13.2
Q ss_pred EEEcCCCCCHHHHHHHHHCCCcEEEe
Q 045356 121 IIYANACKPVSHIKYAASVGVNLTTF 146 (419)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gi~~i~v 146 (419)
|+-.|.+.+..++..|+..|...+.+
T Consensus 200 VIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 200 VIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 44445555555555555555543334
No 80
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=68.54 E-value=83 Score=32.05 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHH
Q 045356 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGS----EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHE 261 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~ 261 (419)
++.+++.++.+.+++.++.+.-+..|..- ...+++.+...++.+.+-++.+.++| .+.=+++-|...+. ...++
T Consensus 173 ~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LG-a~~VV~HPGs~~~~-~~~ee 250 (413)
T PTZ00372 173 LSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLG-IKLYNFHPGSTVGQ-CSKEE 250 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEECCCcCCCC-CCHHH
Confidence 56677888877788887776556666322 12456667777888888888888888 56555665554332 12133
Q ss_pred HHHHHHHHHHhhCCCccCCCccEEEEc
Q 045356 262 AASIIKDAIQTYFPNETAAGHLSVISE 288 (419)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~li~E 288 (419)
..+.+.+.|.+.+... ..+.+.+|
T Consensus 251 ~i~~i~e~L~~~la~~---~gV~IlLE 274 (413)
T PTZ00372 251 GIKNIADCINKAHEET---KSVIIVLE 274 (413)
T ss_pred HHHHHHHHHHHHHhCc---CCCEEEEe
Confidence 3334444444443322 12778889
No 81
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=67.81 E-value=1.3e+02 Score=29.69 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=73.0
Q ss_pred cEEEEeHHHHHHHHHHHHHh-CCCCcee-----------eeeccCCcHHHHHHHHHc--CCcEEE------cCHHHHHHH
Q 045356 52 PFYVLDLGVVISLYHQLISN-LPMVHPY-----------YAVKCNPEPAILETLAAL--GSNFDC------ASPSEIQAV 111 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~-~~~~~i~-----------~avKan~~~~v~~~l~~~--G~g~~V------aS~~E~~~a 111 (419)
+-+.++.+...+-++.+.+. ++-+++- |-.++.+..+.++.+.+. +..+.+ .+..+++.+
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 97 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMA 97 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHH
Confidence 44556777777777776654 1223332 233444445566666432 233322 367788888
Q ss_pred HHCCCCCCcEEEcCCCCC----HHHHHHHHHCCCcEE-E-----ecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 045356 112 LALSVSPDRIIYANACKP----VSHIKYAASVGVNLT-T-----FDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLD 181 (419)
Q Consensus 112 ~~~G~~~~~Ii~~gp~k~----~~~l~~a~~~gi~~i-~-----vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~ 181 (419)
.++|++.=+|.+ .... .+.++.|-+.|.... + ..+.+++..+.+....... =+|.+.
T Consensus 98 ~~~gvd~iri~~--~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga-~~i~i~---------- 164 (337)
T PRK08195 98 YDAGVRVVRVAT--HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGA-QCVYVV---------- 164 (337)
T ss_pred HHcCCCEEEEEE--ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCC-CEEEeC----------
Confidence 888875323332 2222 223344445664321 1 1234444444333111100 022321
Q ss_pred CCCC-CCHHHHHHHHHHHHhc---CCeEEEEEEe
Q 045356 182 SKFG-ANPEEVAHLLGAAQAS---GLAVIGVAFH 211 (419)
Q Consensus 182 sRfG-i~~ee~~~~l~~~~~~---~l~l~Glh~H 211 (419)
--+| +.|+++.++++.+++. .+ -.|+|+|
T Consensus 165 DT~G~~~P~~v~~~v~~l~~~l~~~i-~ig~H~H 197 (337)
T PRK08195 165 DSAGALLPEDVRDRVRALRAALKPDT-QVGFHGH 197 (337)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCC-eEEEEeC
Confidence 1234 5889999999888652 34 5689988
No 82
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.55 E-value=85 Score=28.81 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=65.2
Q ss_pred EeHHHHHHHHHHHHHh-CCCCceeeeeccCCcHHHHHHHHHc-C-C--c-EEEcCHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 56 LDLGVVISLYHQLISN-LPMVHPYYAVKCNPEPAILETLAAL-G-S--N-FDCASPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~-~~~~~i~~avKan~~~~v~~~l~~~-G-~--g-~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
.+.+...+-.+.+.+. ++-+++. +-+......++.+.+. . + | =.|-+.+|++.+.++|. +++++ |..+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA---~Fivs-P~~~ 97 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA---QFIVS-PGLT 97 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC---CEEEC-CCCC
Confidence 3455555555555553 3344554 2223334555666543 2 2 2 24667788888999985 56654 5677
Q ss_pred HHHHHHHHHCCCcEE-EecCHHHHHHHHhHCCCCeEEEEEec
Q 045356 130 VSHIKYAASVGVNLT-TFDSIQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~~~~v~lRv~~ 170 (419)
++-++.+.++++..+ -+-+..|+....+.+-+. +++.+
T Consensus 98 ~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~---vKlFP 136 (212)
T PRK05718 98 PPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRT---FKFFP 136 (212)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCE---EEEcc
Confidence 788888888888755 678888888776665332 55555
No 83
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=67.10 E-value=1.4e+02 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
..|+++.++++.+++ .++. .|+|+|
T Consensus 168 ~~P~~v~~lv~~l~~~~~v~-l~~H~H 193 (365)
T TIGR02660 168 LDPFSTYELVRALRQAVDLP-LEMHAH 193 (365)
T ss_pred CCHHHHHHHHHHHHHhcCCe-EEEEec
Confidence 478888888888765 3554 578888
No 84
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.75 E-value=70 Score=30.24 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEE--eeCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCC
Q 045356 183 KFGANPEEVAHLLGAAQASGLAVIGVAF--HIGS--EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGF 253 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~~l~l~Glh~--H~gs--~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~ 253 (419)
..+.+.+++.++.+.+++.++.+.++.+ |..- ...+.+...+.++.+++.++.++..| .+ ++.++|+.
T Consensus 51 ~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG-~~--~i~~~~~~ 122 (283)
T PRK13209 51 RLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLG-IR--VIQLAGYD 122 (283)
T ss_pred ccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC--EEEECCcc
Confidence 4556777788888888889999987754 2211 12344555667788888888888887 33 56666653
No 85
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.61 E-value=1.1e+02 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhc-C-CeEEEEEEe
Q 045356 187 NPEEVAHLLGAAQAS-G-LAVIGVAFH 211 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~-~-l~l~Glh~H 211 (419)
.|.++.++++.+++. + +. .++|+|
T Consensus 182 ~P~~v~~lv~~l~~~~~~~~-i~~H~H 207 (287)
T PRK05692 182 TPGQVRAVLEAVLAEFPAER-LAGHFH 207 (287)
T ss_pred CHHHHHHHHHHHHHhCCCCe-EEEEec
Confidence 677777777776542 2 43 467777
No 86
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.48 E-value=1.1e+02 Score=28.43 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCC-cEEEcCH
Q 045356 87 PAILETLAALGS-NFDCASP 105 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~ 105 (419)
..+++.|.+.|+ .+++.+.
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred HHHHHHHHHcCCCEEEeccC
Confidence 456777777776 6666544
No 87
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=65.39 E-value=80 Score=30.38 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=25.3
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-cEEEc
Q 045356 56 LDLGVVISLYHQLISNLPMVHPYYAVKCNPE----PAILETLAALGS-NFDCA 103 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~~~~i~~avKan~~----~~v~~~l~~~G~-g~~Va 103 (419)
-|++.+.+-++++++... +-..+|-.+. .++++.+.+.|+ ++.|.
T Consensus 140 ~~~~~~~eiv~~vr~~~~---~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTD---VPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cCHHHHHHHHHHHHHhcC---CCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 344555666666666541 1233555542 466777777787 66653
No 88
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=65.35 E-value=62 Score=30.56 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEe--eC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC
Q 045356 184 FGANPEEVAHLLGAAQASGLAVIGVAFH--IG--SEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG 252 (419)
Q Consensus 184 fGi~~ee~~~~l~~~~~~~l~l~Glh~H--~g--s~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG 252 (419)
.+++.+++.++.+.+++.||.+.++.+. .. -...+++...+.++.++++++.++.+| . +++.++|+
T Consensus 47 ~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG-~--~~v~~~~~ 116 (284)
T PRK13210 47 LDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLG-I--RTIQLAGY 116 (284)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhC-C--CEEEECCc
Confidence 3455667777777788889999877532 11 012355666677888888888888888 3 34555543
No 89
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=65.13 E-value=60 Score=31.37 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=7.9
Q ss_pred EcCHHHHHHHHHCCC
Q 045356 102 CASPSEIQAVLALSV 116 (419)
Q Consensus 102 VaS~~E~~~a~~~G~ 116 (419)
|.|.++++.+.++|+
T Consensus 180 v~s~~~a~~a~~~G~ 194 (299)
T cd02809 180 ILTPEDALRAVDAGA 194 (299)
T ss_pred cCCHHHHHHHHHCCC
Confidence 345555555555554
No 90
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=64.29 E-value=29 Score=25.80 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=45.0
Q ss_pred EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHhcCCeEEEEEE
Q 045356 143 LTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFG----ANPEEVAHLLGAAQASGLAVIGVAF 210 (419)
Q Consensus 143 ~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfG----i~~ee~~~~l~~~~~~~l~l~Glh~ 210 (419)
+++++|..++-+..+..+..++-.|+-|.... + ++-.| ++.++...+.+.+++.++.+.|++-
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~---i--~~~CG~al~~~~~d~~~i~~~l~~~~i~~~~iy~ 71 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPRE---I--SAGCGLALRFEPEDLEKIKEILEENGIEYEGIYE 71 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCChh---c--cCCCCEEEEEChhhHHHHHHHHHHCCCCeeEEEE
Confidence 46899999999888877666777788764321 1 12344 3456777788888889999999873
No 91
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.82 E-value=1.6e+02 Score=29.12 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=71.5
Q ss_pred cEEEEeHHHHHHHHHHHHHh-CCCCcee-----------eeeccCCcHHHHHHHHHc--CCcEE------EcCHHHHHHH
Q 045356 52 PFYVLDLGVVISLYHQLISN-LPMVHPY-----------YAVKCNPEPAILETLAAL--GSNFD------CASPSEIQAV 111 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~-~~~~~i~-----------~avKan~~~~v~~~l~~~--G~g~~------VaS~~E~~~a 111 (419)
+-+.++.+...+-++.+-+. ++-+++- |-.++.+..+-++.+.+. ...+. ..+..+++.+
T Consensus 17 ~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 34557777777777777654 1223332 223444444444444432 12222 1367788888
Q ss_pred HHCCCCCCcEEEcCCCCC----HHHHHHHHHCCCcE-EEe-----cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 045356 112 LALSVSPDRIIYANACKP----VSHIKYAASVGVNL-TTF-----DSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLD 181 (419)
Q Consensus 112 ~~~G~~~~~Ii~~gp~k~----~~~l~~a~~~gi~~-i~v-----dS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~ 181 (419)
.++|++.=+|.+ .... .+.++.+.+.|... +++ .+.+++..+.+....... =+|.+.
T Consensus 97 ~~~gvd~iri~~--~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga-~~i~i~---------- 163 (333)
T TIGR03217 97 YDAGARTVRVAT--HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGA-DCVYIV---------- 163 (333)
T ss_pred HHCCCCEEEEEe--ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCC-CEEEEc----------
Confidence 888875433333 2222 22344444566432 111 223444443332111100 022221
Q ss_pred CCCC-CCHHHHHHHHHHHHhc-C--CeEEEEEEe
Q 045356 182 SKFG-ANPEEVAHLLGAAQAS-G--LAVIGVAFH 211 (419)
Q Consensus 182 sRfG-i~~ee~~~~l~~~~~~-~--l~l~Glh~H 211 (419)
--+| +.|+++.+++..+++. + + -.|+|+|
T Consensus 164 DT~G~~~P~~v~~~v~~l~~~l~~~i-~ig~H~H 196 (333)
T TIGR03217 164 DSAGAMLPDDVRDRVRALKAVLKPET-QVGFHAH 196 (333)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCc-eEEEEeC
Confidence 1234 5889999999888753 3 4 4689998
No 92
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.79 E-value=1.2e+02 Score=29.87 Aligned_cols=92 Identities=12% Similarity=0.196 Sum_probs=56.3
Q ss_pred cEEEE-----eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc--------C------------H
Q 045356 52 PFYVL-----DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA--------S------------P 105 (419)
Q Consensus 52 P~~v~-----d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va--------S------------~ 105 (419)
-.+.+ +...+.+-++++++.+|+.-+. +|--.+.+-++.+.+.|+ .+.|. + .
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi--~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVI--AGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEE--EEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 46777 6667777788888877764322 333446667777777776 44433 1 1
Q ss_pred HHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 106 SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 106 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
.-+..+.++ .. -.|+-.|.+.+..++.+|+..|+..+.+.
T Consensus 191 ~ai~~~~~~-~~-ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 191 AALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHH-cC-CCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 112333332 11 34777788888888888888887655555
No 93
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=63.17 E-value=77 Score=31.76 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEcC------------HHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCAS------------PSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
++++.+++..+ +-..+|--.+++.++.+.+.|+ ++.|+. .+.+..++++--..-.|+..|.+.+
T Consensus 218 ~~i~~l~~~~~---~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~ 294 (367)
T TIGR02708 218 RDIEEIAGYSG---LPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRR 294 (367)
T ss_pred HHHHHHHHhcC---CCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCC
Confidence 45666766543 2245887778888888889998 777765 3444444443111135788888888
Q ss_pred HHHHHHHHHCCCcEEEec
Q 045356 130 VSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vd 147 (419)
..++.+|+..|+..+.+.
T Consensus 295 g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 295 GQHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 888888888887754443
No 94
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=63.07 E-value=39 Score=32.38 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCCCCCCC--CCCCCCHH-HHHHHH----HHHHhcCCeEEEEEEeeCCC----CCCHHHHHHHHHHHHHH
Q 045356 164 LLIRIKSPVDGGARYPLD--SKFGANPE-EVAHLL----GAAQASGLAVIGVAFHIGSE----ATNLDAFHAAIAEAKTV 232 (419)
Q Consensus 164 v~lRv~~~~~~g~~~~~~--sRfGi~~e-e~~~~l----~~~~~~~l~l~Glh~H~gs~----~~~~~~~~~~~~~~~~l 232 (419)
-..|++.+. ++.. -..|.+.. ++.+.+ +.+++.++++ .+|.+.. ..+++....+++.+.-=
T Consensus 60 ~~yRisS~l-----iP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRl---s~HP~qf~vLnSp~~~Vv~~si~~L~yH 131 (275)
T PF03851_consen 60 RFYRISSDL-----IPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRL---SMHPDQFTVLNSPREEVVENSIRDLEYH 131 (275)
T ss_dssp -EEE--TTS-----STTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EE---EE---TT--TT-SSHHHHHHHHHHHHHH
T ss_pred CEEecCccc-----CCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeE---EecCCcceeCCCCCHHHHHHHHHHHHHH
Confidence 357888753 2222 24455543 343333 3445678887 5898765 34567777777766555
Q ss_pred HHHHHHcCCCcce-----EEEeCCCCCC
Q 045356 233 FETAARLGMTKMR-----VLDIGGGFAC 255 (419)
Q Consensus 233 ~~~l~~~g~~~~~-----~ldiGGG~~~ 255 (419)
.+.+...| .... .|++||.+|.
T Consensus 132 ~~~Ld~mg-~~~~~~~~i~IH~GG~Ygd 158 (275)
T PF03851_consen 132 ARLLDLMG-LDDSPDHKINIHVGGVYGD 158 (275)
T ss_dssp HHHHHHTT--TT----EEEEE----SS-
T ss_pred HHHHHHcC-CCcccccEEEEeeCCCCCC
Confidence 55566666 4433 7899999885
No 95
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=63.03 E-value=1.2e+02 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHH
Q 045356 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHA 224 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~ 224 (419)
.+++.+.++++.+...+..-..|.=..|. ..|....+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~--~~P~~v~~ 176 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGY--LTPEEFGE 176 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCC--CCHHHHHH
Confidence 35666666666665555555444433333 33444433
No 96
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=62.25 E-value=1.4e+02 Score=28.02 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHH
Q 045356 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGS----EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHE 261 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~ 261 (419)
++.+++.++.+.+++.++.+. +|..- ...+++...+.++.+++.++.++..| .+.=.++.| ..+. ...++
T Consensus 42 ~~~~~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lG-a~~vv~h~g-~~~~-~~~e~ 115 (273)
T smart00518 42 LSEETAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEIKRCEELG-IKALVFHPG-SYLK-QSKEE 115 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccc-cccC-CCHHH
Confidence 556677777777777788754 34211 12355667778888999999888888 453333333 2221 22333
Q ss_pred HHHHHHHHHHhhCCCccCCCccEEEEcC
Q 045356 262 AASIIKDAIQTYFPNETAAGHLSVISEP 289 (419)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~li~Ep 289 (419)
..+.+.+.+.+......+ +++.+|+
T Consensus 116 ~~~~~~~~l~~l~~~~~g---v~l~lEn 140 (273)
T smart00518 116 ALNRIIESLNEVIDETKG---VVILLET 140 (273)
T ss_pred HHHHHHHHHHHHHhccCC---cEEEEec
Confidence 333334444443322112 7888884
No 97
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.17 E-value=1.4e+02 Score=28.21 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeeC----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHH
Q 045356 187 NPEEVAHLLGAAQASGLAVIGVAFHIG----SEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEA 262 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~~l~l~Glh~H~g----s~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~ 262 (419)
+.+++.++.+.+++.++.+..+..|.. -...+.+..+..++.+.+.++.++.+| .+.-+++-|.... ...++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~lg-a~~vv~H~G~~~~--~~~e~~ 120 (274)
T TIGR00587 44 EEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCELLG-IMLYNFHPGSALK--CSEEEG 120 (274)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEECCCCCCC--CCHHHH
Confidence 344555555555566665444444521 123456666777888888888888888 5544444333222 223444
Q ss_pred HHHHHHHHHhhCCCccCCCccEEEEc--Ccc
Q 045356 263 ASIIKDAIQTYFPNETAAGHLSVISE--PGR 291 (419)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~li~E--pGR 291 (419)
.+.+.+.|.+.+... ..++|.+| ||.
T Consensus 121 ~~~~~~~l~~l~~~~---~~v~l~lEN~~~~ 148 (274)
T TIGR00587 121 LDNLIESLNVVIKET---KIVTILLENMAGQ 148 (274)
T ss_pred HHHHHHHHHHHHhcc---CCCEEEEEeCCCC
Confidence 344445555544321 12789999 654
No 98
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.64 E-value=1.6e+02 Score=30.77 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCCCcEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc--------C---------
Q 045356 48 ELDEPFYVLDLG-----VVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA--------S--------- 104 (419)
Q Consensus 48 ~~~tP~~v~d~~-----~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va--------S--------- 104 (419)
+.+--++++|.. ...+.++++++.+|+..+. .+.-.+++-++.+.+.|+ .+.|. +
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~--aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDII--AGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEE--ECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCC
Confidence 345666777761 2346788888877765444 466667777888888887 45432 1
Q ss_pred ----HHHHHH-HHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 105 ----PSEIQA-VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 105 ----~~E~~~-a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
+.|+.. +.+.|+ .++-.|.+.++.++..|+..|...+.+.+.
T Consensus 329 ~~~ai~~~~~~~~~~~v---~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 329 QASAVYHVARYARERGV---PCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred hHHHHHHHHHHHhhcCC---eEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 123332 233454 477778888888999988888877777765
No 99
>PRK15452 putative protease; Provisional
Probab=61.25 E-value=2e+02 Score=29.59 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=69.5
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCCc-------HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc--CC
Q 045356 57 DLGVVISLYHQLISNLPMVHPYYAVKCNPE-------PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA--NA 126 (419)
Q Consensus 57 d~~~l~~ni~~~~~~~~~~~i~~avKan~~-------~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~--gp 126 (419)
+.+.+++.++..+++ +.++++++=.-.. ...++.+.+.|+ ++-|++++.+..+++.+. .-.|+.. -.
T Consensus 44 ~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p-~l~ih~stqln 120 (443)
T PRK15452 44 NHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFP-EMPIHLSVQAN 120 (443)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCC-CCeEEEEeccc
Confidence 445677766665553 5677655322221 233566667888 999999999999999742 2245543 23
Q ss_pred CCCHHHHHHHHHCCCcEEEec---CHHHHHHHHhHCCCCeEEEEEe
Q 045356 127 CKPVSHIKYAASVGVNLTTFD---SIQELDKIRKWHPKCELLIRIK 169 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~i~vd---S~~el~~i~~~~~~~~v~lRv~ 169 (419)
..+...+++..+.|+..+++. |++|++.|.+..+..++=+-|+
T Consensus 121 i~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVH 166 (443)
T PRK15452 121 AVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVH 166 (443)
T ss_pred CCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEE
Confidence 456788888889999776665 4566666654444444444444
No 100
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=61.18 E-value=1e+02 Score=29.01 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeeCC---C--CCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCC-CCCCHHHH
Q 045356 189 EEVAHLLGAAQASGLAVIGVAFHIGS---E--ATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFA-CNPGFHEA 262 (419)
Q Consensus 189 ee~~~~l~~~~~~~l~l~Glh~H~gs---~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~-~~~~~~~~ 262 (419)
.++.++.+.+++.++.+.+++.+.++ + ..+.....+.++.+++.++.++.+| .+. +-+..|.. ...+.++.
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG-a~~--i~~~~~~~~~~~~~~~~ 123 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMN-AGY--TLISAAHAGYLTPPNVI 123 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhC-CCE--EEEcCCCCCCCCCHHHH
Confidence 35566666667789999887653222 1 1244455667788888888888888 443 33333322 21222332
Q ss_pred HHHHHHHH---HhhCCCccCCCccEEEEcCc
Q 045356 263 ASIIKDAI---QTYFPNETAAGHLSVISEPG 290 (419)
Q Consensus 263 ~~~i~~~l---~~~~~~~~~~~~~~li~EpG 290 (419)
.+.+.+.+ .++..+. | +++.+||.
T Consensus 124 ~~~~~~~l~~l~~~a~~~-g---v~l~iE~~ 150 (275)
T PRK09856 124 WGRLAENLSELCEYAENI-G---MDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHHHHHc-C---CEEEEecC
Confidence 23333333 2333332 3 89999983
No 101
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=60.28 E-value=37 Score=33.28 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEE-------eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHH
Q 045356 35 LLEFMESIILKRQELDEPFYVL-------DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSE 107 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~tP~~v~-------d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E 107 (419)
+..+++++. ...+-|+.+. |.+.|+.-++..+.. +. +.+++-......++.+..+.|+.+-+.++.+
T Consensus 112 ~~~~Vk~V~---eavd~PL~Id~s~n~~kD~evleaale~~~g~--~p-LInSat~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 112 AAKTVEEVL---QAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RC-LLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HHHHHHHHH---HhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CC-EEEECCHHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 555666654 2468899877 788888888776643 12 5555555447789999999999999999777
Q ss_pred HHHHHH-------CCCCCCcEEEcC
Q 045356 108 IQAVLA-------LSVSPDRIIYAN 125 (419)
Q Consensus 108 ~~~a~~-------~G~~~~~Ii~~g 125 (419)
+..+.+ +|+++++|++-.
T Consensus 186 ln~ak~L~~~l~~~Gi~~edIviDP 210 (319)
T PRK04452 186 INLAKQLNILLTELGVPRERIVMDP 210 (319)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 766554 599999999864
No 102
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=59.73 E-value=2e+02 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhc-CCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQAS-GLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~-~l~l~Glh~H 211 (419)
..|+++.++++.+++. ++ -.|+|+|
T Consensus 171 ~~P~~v~~lv~~l~~~~~~-~l~~H~H 196 (378)
T PRK11858 171 LDPFTMYELVKELVEAVDI-PIEVHCH 196 (378)
T ss_pred CCHHHHHHHHHHHHHhcCC-eEEEEec
Confidence 4788999988887653 45 4688888
No 103
>PRK12677 xylose isomerase; Provisional
Probab=59.61 E-value=1.4e+02 Score=30.03 Aligned_cols=96 Identities=25% Similarity=0.296 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCeEEEEEE----ee----CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC----CC
Q 045356 191 VAHLLGAAQASGLAVIGVAF----HI----GSE-ATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC----NP 257 (419)
Q Consensus 191 ~~~~l~~~~~~~l~l~Glh~----H~----gs~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~----~~ 257 (419)
+.++.+.+++.+|.+.++.. |. |+- ..+.+.-+.+++.+++.++.++++| -+.=++. +|.-+. ..
T Consensus 69 ~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLG-a~~Vvv~-~G~~g~~~~~~~ 146 (384)
T PRK12677 69 IKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELG-AKTYVMW-GGREGAEYDAAK 146 (384)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCEEEEe-eCCCCccCcccC
Confidence 55666667778999888743 21 121 2345544566888899999899988 3432333 332222 12
Q ss_pred CHHHHHHHHHHHHHh---hCCCccCCCccEEEEcCc
Q 045356 258 GFHEAASIIKDAIQT---YFPNETAAGHLSVISEPG 290 (419)
Q Consensus 258 ~~~~~~~~i~~~l~~---~~~~~~~~~~~~li~EpG 290 (419)
++++..+...++|.+ |..+. + ..+++.+||-
T Consensus 147 d~~~a~~~~~eaL~~l~~~A~~~-G-~gV~laIEpk 180 (384)
T PRK12677 147 DVRAALDRYREAIDLLAAYVKDQ-G-YDLRFALEPK 180 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-C-CCcEEEEccC
Confidence 444444444444433 32221 1 1288999985
No 104
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=59.40 E-value=51 Score=32.39 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=59.6
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC----CCceeeeeccCC--cHHHHHHHHHcCC-cEEE------------cCHHHHHHH
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP----MVHPYYAVKCNP--EPAILETLAALGS-NFDC------------ASPSEIQAV 111 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~----~~~i~~avKan~--~~~v~~~l~~~G~-g~~V------------aS~~E~~~a 111 (419)
...++-+++.+.+.++++++..+ -+|++--.+-.. ...+++.+.+.|+ .+.| +..+.+..+
T Consensus 113 Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~v 192 (323)
T COG0042 113 GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKEL 192 (323)
T ss_pred chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHH
Confidence 45677889999999999998874 133333332332 3568999999987 4544 345555555
Q ss_pred HHCCCCCCcEEEcCCCCCHHHHHHHHHC
Q 045356 112 LALSVSPDRIIYANACKPVSHIKYAASV 139 (419)
Q Consensus 112 ~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (419)
++. ++.-.|+.+|.+++.++.+..+++
T Consensus 193 k~~-~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 193 KEA-VPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred HHh-CCCCeEEeCCCcCCHHHHHHHHHh
Confidence 555 332357778888898998888874
No 105
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.99 E-value=94 Score=26.33 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 193 HLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 193 ~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
++++.+++.+..+.|++...++.. ..+.++.+.+++.| ..-..+=+||+..+
T Consensus 43 ~~v~aa~~~~adiVglS~l~~~~~----------~~~~~~~~~l~~~g-l~~~~vivGG~~vi 94 (134)
T TIGR01501 43 EFIKAAIETKADAILVSSLYGHGE----------IDCKGLRQKCDEAG-LEGILLYVGGNLVV 94 (134)
T ss_pred HHHHHHHHcCCCEEEEecccccCH----------HHHHHHHHHHHHCC-CCCCEEEecCCcCc
Confidence 455556667889999988876532 12344566777777 43334556777654
No 106
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.85 E-value=67 Score=29.50 Aligned_cols=98 Identities=6% Similarity=0.023 Sum_probs=62.4
Q ss_pred eHHHHHHHHHHHHHh-CCCCceeeeeccCCcHHHHHHHHH-cC----C--c-EEEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 57 DLGVVISLYHQLISN-LPMVHPYYAVKCNPEPAILETLAA-LG----S--N-FDCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 57 d~~~l~~ni~~~~~~-~~~~~i~~avKan~~~~v~~~l~~-~G----~--g-~~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
+.+....-.+.+.+. ++-+++.+ -+....+.++.+.+ .+ + | =.|-+.++++.+.++|- +.++ .|.
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA---~Fiv-sP~ 96 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA---QFIV-SPS 96 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC---CEEE-CCC
Confidence 445555555555443 22344443 23334456666653 32 2 3 24678889999999984 5666 477
Q ss_pred CCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHCC
Q 045356 128 KPVSHIKYAASVGVNLT-TFDSIQELDKIRKWHP 160 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~ 160 (419)
.+++-++.+.++|+..+ -+.+.+|+....+.+.
T Consensus 97 ~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Ga 130 (213)
T PRK06552 97 FNRETAKICNLYQIPYLPGCMTVTEIVTALEAGS 130 (213)
T ss_pred CCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCC
Confidence 88888888899988654 7788899888776654
No 107
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.42 E-value=1.6e+02 Score=27.61 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=35.3
Q ss_pred HHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 045356 154 KIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAE 228 (419)
Q Consensus 154 ~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~ 228 (419)
...+.+++....++++... .+| .+++.+.++++.+.+.+..-..|.=..|. ..|....+.++.
T Consensus 114 ~~i~~a~~~G~~v~~~~~~--------~~~--~~~~~~~~~~~~~~~~G~~~i~l~DT~G~--~~P~~v~~lv~~ 176 (259)
T cd07939 114 RLVGRAKDRGLFVSVGAED--------ASR--ADPDFLIEFAEVAQEAGADRLRFADTVGI--LDPFTTYELIRR 176 (259)
T ss_pred HHHHHHHHCCCeEEEeecc--------CCC--CCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCHHHHHHHHHH
Confidence 3344444444455666532 133 47788888888877777766555544444 445555444443
No 108
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=58.33 E-value=1.7e+02 Score=27.64 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=70.7
Q ss_pred cHHHHHHHHHcCC-cEEEc-----------------CHHH-HHHHHHCCCCCCcEE-EcCC-CCCHHHHHHHHHCCCcEE
Q 045356 86 EPAILETLAALGS-NFDCA-----------------SPSE-IQAVLALSVSPDRII-YANA-CKPVSHIKYAASVGVNLT 144 (419)
Q Consensus 86 ~~~v~~~l~~~G~-g~~Va-----------------S~~E-~~~a~~~G~~~~~Ii-~~gp-~k~~~~l~~a~~~gi~~i 144 (419)
-..+++.|.+.|+ .+||. +..| ++.+++.. +...+. +.-+ .-..++++.+.+.|+..+
T Consensus 24 k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~g~~~i 102 (263)
T cd07943 24 VRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL-KQAKLGVLLLPGIGTVDDLKMAADLGVDVV 102 (263)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc-cCCEEEEEecCCccCHHHHHHHHHcCCCEE
Confidence 3567888888887 77775 3334 33333432 223333 2111 123678888888887654
Q ss_pred -EecCHHHH---HHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHH
Q 045356 145 -TFDSIQEL---DKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLD 220 (419)
Q Consensus 145 -~vdS~~el---~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~ 220 (419)
.+.+.++. ....+.++.....+++++.. -+..+++.+.++++.+.+.+.....|-=..| ...|.
T Consensus 103 ri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~----------~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G--~~~P~ 170 (263)
T cd07943 103 RVATHCTEADVSEQHIGAARKLGMDVVGFLMM----------SHMASPEELAEQAKLMESYGADCVYVTDSAG--AMLPD 170 (263)
T ss_pred EEEechhhHHHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--CcCHH
Confidence 34444443 33334444444555555521 1225677787888777776766655543333 34555
Q ss_pred HHHHHHHHH
Q 045356 221 AFHAAIAEA 229 (419)
Q Consensus 221 ~~~~~~~~~ 229 (419)
...+.++.+
T Consensus 171 ~v~~lv~~l 179 (263)
T cd07943 171 DVRERVRAL 179 (263)
T ss_pred HHHHHHHHH
Confidence 555444443
No 109
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.84 E-value=1.5e+02 Score=27.12 Aligned_cols=148 Identities=12% Similarity=0.160 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEEEeH--HHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCcEEEcC---HH
Q 045356 33 GGLLEFMESIILKRQELDEPFYVLDL--GVVISLYHQLISNLPM-VHPYYAVKCNPEPAILETLAALGSNFDCAS---PS 106 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~tP~~v~d~--~~l~~ni~~~~~~~~~-~~i~~avKan~~~~v~~~l~~~G~g~~VaS---~~ 106 (419)
+...++.+.++ +-+=+.+++-+ ..-.+.++++++.+++ -++.--.=+=-+++-++...+.|..|-|+- .+
T Consensus 25 ~~a~~~~~al~----~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~ 100 (213)
T PRK06552 25 EEALKISLAVI----KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRE 100 (213)
T ss_pred HHHHHHHHHHH----HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 33445555554 44666666443 3455677888777742 134444444456777888889999888863 34
Q ss_pred HHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEe---c--CHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 045356 107 EIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTF---D--SIQELDKIRKWHPKCELLIRIKSPVDGGARYPLD 181 (419)
Q Consensus 107 E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~v---d--S~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~ 181 (419)
=++.+++.|+ .+..+..+++|+..|.+.|+..+-+ + ..+.++.+....+. +++.+-
T Consensus 101 v~~~~~~~~i-----~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~----ip~~at---------- 161 (213)
T PRK06552 101 TAKICNLYQI-----PYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQ----VNVMVT---------- 161 (213)
T ss_pred HHHHHHHcCC-----CEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCC----CEEEEE----------
Confidence 4444555554 3344467889999999999876544 2 34556665554443 344432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEE
Q 045356 182 SKFGANPEEVAHLLGAAQASGLAVIGVA 209 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~~~l~l~Glh 209 (419)
-|++.+.+.+.++ .+....|+-
T Consensus 162 --GGI~~~N~~~~l~----aGa~~vavg 183 (213)
T PRK06552 162 --GGVNLDNVKDWFA----AGADAVGIG 183 (213)
T ss_pred --CCCCHHHHHHHHH----CCCcEEEEc
Confidence 2788887777664 444555443
No 110
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.86 E-value=1.1e+02 Score=29.35 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=38.9
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHC------CCcEE---EecCHHHHHHHHhHC
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASV------GVNLT---TFDSIQELDKIRKWH 159 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~------gi~~i---~vdS~~el~~i~~~~ 159 (419)
+-++|.|.+|+..+.++|+ +.|.+-+ .++++++.+++. ++.+. .| +++.+..+++.+
T Consensus 185 I~VEv~tleea~~A~~~Ga--DiI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~G 250 (273)
T PRK05848 185 IEIECESLEEAKNAMNAGA--DIVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSG 250 (273)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcC
Confidence 4789999999999999997 4555555 378888888763 22122 23 566777776653
No 111
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=56.86 E-value=1.5e+02 Score=27.97 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEEee----CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC
Q 045356 183 KFGANPEEVAHLLGAAQASGLAVIGVAFHI----GSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG 252 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~~l~l~Glh~H~----gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG 252 (419)
..+.+.+++.++.+.+++.++.+.++.+-. .-...+++...+.++.+++.++.++..| -+ .+-++|+
T Consensus 46 ~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG-~~--~v~~~~~ 116 (279)
T TIGR00542 46 RLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLG-IR--TIQLAGY 116 (279)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhC-CC--EEEecCc
Confidence 456677888888888888999998875421 0112355656667888888888888888 33 4445553
No 112
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=56.67 E-value=2.4e+02 Score=29.06 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=20.0
Q ss_pred CCC-CHHHHHHHHHHHHh-cCCeEEEEEEee
Q 045356 184 FGA-NPEEVAHLLGAAQA-SGLAVIGVAFHI 212 (419)
Q Consensus 184 fGi-~~ee~~~~l~~~~~-~~l~l~Glh~H~ 212 (419)
.|+ .|.++.++++.+++ .++ -.++|+|-
T Consensus 177 ~G~l~P~~v~~lv~alk~~~~~-pi~~H~Hn 206 (448)
T PRK12331 177 AGILTPYVAYELVKRIKEAVTV-PLEVHTHA 206 (448)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 454 67888899988875 364 45788884
No 113
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=56.67 E-value=1.1e+02 Score=28.50 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeecc-----CCcHHHHHHHHHcCC-cEEEcCHH-----HHHHHHHCCCCCCcEE
Q 045356 54 YVLDLGVVISLYHQLISNLPMVHPYYAVKC-----NPEPAILETLAALGS-NFDCASPS-----EIQAVLALSVSPDRII 122 (419)
Q Consensus 54 ~v~d~~~l~~ni~~~~~~~~~~~i~~avKa-----n~~~~v~~~l~~~G~-g~~VaS~~-----E~~~a~~~G~~~~~Ii 122 (419)
+.-|++.+.+-++.+++. +..+ .+|. .....+++.+.+.|+ .+.+.+.. ..+.+.+.- ..-.|+
T Consensus 121 Ll~~p~~l~eiv~avr~~--~~pV--svKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVI 195 (233)
T cd02911 121 LLKDPERLSEFIKALKET--GVPV--SVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFII 195 (233)
T ss_pred HcCCHHHHHHHHHHHHhc--CCCE--EEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEE
Confidence 445677777778888763 2222 2333 235678888888887 56664432 123333332 123577
Q ss_pred EcCCCCCHHHHHHHHHCCCcEEEe
Q 045356 123 YANACKPVSHIKYAASVGVNLTTF 146 (419)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gi~~i~v 146 (419)
-+|.+.+.++...+++.|+..+.+
T Consensus 196 gnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 196 GNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EECCcCCHHHHHHHHHcCCCEEEE
Confidence 778888888888888777765444
No 114
>PRK05660 HemN family oxidoreductase; Provisional
Probab=55.90 E-value=68 Score=32.16 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=37.3
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCCCC-ceeeeeccCC---cHHHHHHHHHcCC---cEEEcCHH
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLPMV-HPYYAVKCNP---EPAILETLAALGS---NFDCASPS 106 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~~~-~i~~avKan~---~~~v~~~l~~~G~---g~~VaS~~ 106 (419)
|||.+ ++.+.|.+-++.+++.++-. ..-..+=+|+ ..+.++.+.+.|+ .+.|-|..
T Consensus 67 GtPs~-l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~ 129 (378)
T PRK05660 67 GTPSL-FSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFS 129 (378)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCC
Confidence 45653 56778888888888887521 1345677787 4688889999884 44554444
No 115
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=55.63 E-value=1.6e+02 Score=28.94 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=53.3
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-cEEEcCH---------------------------
Q 045356 57 DLGVVISLYHQLISNLPMVHPYYAVKCN---PEPAILETLAALGS-NFDCASP--------------------------- 105 (419)
Q Consensus 57 d~~~l~~ni~~~~~~~~~~~i~~avKan---~~~~v~~~l~~~G~-g~~VaS~--------------------------- 105 (419)
|.+.+.++++.+++.++ +- ..+|-. -....++.+.+.|+ +++|+..
T Consensus 162 df~~~~~~i~~l~~~~~-vP--VivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 162 DFRGWLERIEELVKALS-VP--VIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CHHHHHHHHHHHHHhcC-CC--EEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 34455678888887652 11 336655 35788899999998 7777542
Q ss_pred -----HHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecC
Q 045356 106 -----SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 106 -----~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS 148 (419)
..+..+++.- ..-.|+.+|...+..++..++..|+..+.+.+
T Consensus 239 g~~t~~~l~~~~~~~-~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 239 GIPTAASLLEVRSAL-PDLPLIASGGIRNGLDIAKALALGADLVGMAG 285 (326)
T ss_pred cccHHHHHHHHHHHc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcH
Confidence 2233333321 11346677777777777777777766554543
No 116
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.37 E-value=50 Score=30.34 Aligned_cols=134 Identities=14% Similarity=0.202 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEE--eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcC---HHHHHH
Q 045356 36 LEFMESIILKRQELDEPFYVL--DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCAS---PSEIQA 110 (419)
Q Consensus 36 ~~~~~~~~~~~~~~~tP~~v~--d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS---~~E~~~ 110 (419)
.++.+.++ +.+=..+++ +-+.-.+.++++++.+|+..+-.-.+.+. .-++...+.|..|-|+- .+=++.
T Consensus 30 ~~i~~al~----~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~~~vi~~ 103 (212)
T PRK05718 30 VPLAKALV----AGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLTPPLLKA 103 (212)
T ss_pred HHHHHHHH----HcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 34445554 334455543 33455677888888899877887788777 55788889999887763 333444
Q ss_pred HHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecC-----HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCC
Q 045356 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDS-----IQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKF 184 (419)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS-----~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRf 184 (419)
+++.| +.+...+.++.|+..|.+.|...+ .++. ...++.+..-.|. +++.+. -
T Consensus 104 a~~~~-----i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~----~~~~pt------------G 162 (212)
T PRK05718 104 AQEGP-----IPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPD----VRFCPT------------G 162 (212)
T ss_pred HHHcC-----CCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCC----CeEEEe------------C
Confidence 45444 344544578889999999998754 3321 2333333333332 455543 2
Q ss_pred CCCHHHHHHHHH
Q 045356 185 GANPEEVAHLLG 196 (419)
Q Consensus 185 Gi~~ee~~~~l~ 196 (419)
|++++.+.+.++
T Consensus 163 GV~~~ni~~~l~ 174 (212)
T PRK05718 163 GISPANYRDYLA 174 (212)
T ss_pred CCCHHHHHHHHh
Confidence 788887776654
No 117
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=54.96 E-value=54 Score=29.95 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCCCcEE------EcC-CCC----CHHHHHHHHHCCCcEE---EecCHHH
Q 045356 88 AILETLAALGS--NFDCASPSEIQAVLALSVSPDRII------YAN-ACK----PVSHIKYAASVGVNLT---TFDSIQE 151 (419)
Q Consensus 88 ~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~~~Ii------~~g-p~k----~~~~l~~a~~~gi~~i---~vdS~~e 151 (419)
++++..+..|. -+||+|.+|...+.++|++ |+ |++ +.+ +-..++.+.+.|+.++ -++|.++
T Consensus 118 ~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D---~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~ 194 (229)
T COG3010 118 ELIARIKYPGQLAMADCSTFEEGLNAHKLGFD---IIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQ 194 (229)
T ss_pred HHHHHhhcCCcEEEeccCCHHHHHHHHHcCCc---EEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHH
Confidence 34444444564 7999999999999999983 33 222 111 1234555667777654 5688998
Q ss_pred HHHHHhHCC
Q 045356 152 LDKIRKWHP 160 (419)
Q Consensus 152 l~~i~~~~~ 160 (419)
+.+..+++.
T Consensus 195 Ak~a~~~Ga 203 (229)
T COG3010 195 AKKAIEIGA 203 (229)
T ss_pred HHHHHHhCC
Confidence 888877653
No 118
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.93 E-value=2.3e+02 Score=28.35 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCC-cEEEc----CHHHH---HHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCc
Q 045356 87 PAILETLAALGS-NFDCA----SPSEI---QAVLALSVSPDRIIYANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~Va----S~~E~---~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~ 142 (419)
..+++.|.+.|+ .+++. +..|. +.+.+.|.+. .++..+.. ..++++.|++.|+.
T Consensus 29 ~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~-~i~~~~r~-~~~di~~a~~~g~~ 90 (378)
T PRK11858 29 LAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNA-SILALNRA-VKSDIDASIDCGVD 90 (378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCe-EEEEEccc-CHHHHHHHHhCCcC
Confidence 456666666776 55553 22332 2222334332 23322222 24566666666654
No 119
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=54.75 E-value=89 Score=30.39 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=71.5
Q ss_pred ecCHHHHHHHHhHCCC-CeEEEEEecCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCC----CC
Q 045356 146 FDSIQELDKIRKWHPK-CELLIRIKSPVD---GGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSE----AT 217 (419)
Q Consensus 146 vdS~~el~~i~~~~~~-~~v~lRv~~~~~---~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~----~~ 217 (419)
..++..|.++.+.... .--..|+..+.- ++.....+...-...+++.++-+.+++.+++ +.+|.+.. ..
T Consensus 44 ~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~ir---ls~Hp~y~inL~S~ 120 (303)
T PRK02308 44 LSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIR---LSFHPDQFVVLNSP 120 (303)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCC---eeccChhhhcCCCC
Confidence 4455556665554321 123467776531 1111111122334456666666666667774 56785432 23
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCc---ceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCCCccEEEEc
Q 045356 218 NLDAFHAAIAEAKTVFETAARLGMTK---MRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISE 288 (419)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~E 288 (419)
+++.+...++.+..-++.+...| .+ .=+++.||..+. -+...+.+.+.+.+..... ..+|.+|
T Consensus 121 ~~ev~e~Si~~L~~~~~~~~~lG-~~~~~~vViHpG~~~~~---ke~al~r~~~~l~~l~~~~----~~~L~LE 186 (303)
T PRK02308 121 KPEVVENSIKDLEYHAKLLDLMG-IDDSSKINIHVGGAYGD---KEKALERFIENIKKLPESI----KKRLTLE 186 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCccCCC---HHHHHHHHHHHHHHhhHHh----CCEEEEe
Confidence 56777777888877777888888 56 556888886643 1333333444444432211 2667887
No 120
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.42 E-value=2.5e+02 Score=28.54 Aligned_cols=16 Identities=0% Similarity=0.160 Sum_probs=8.4
Q ss_pred EEcCHHHHHHHHHCCC
Q 045356 101 DCASPSEIQAVLALSV 116 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~ 116 (419)
+|+|.++++.+.++|+
T Consensus 201 ~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 201 NIVTKEAALDLISVGA 216 (404)
T ss_pred ecCCHHHHHHHHHcCC
Confidence 4555555555555554
No 121
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=54.35 E-value=61 Score=30.46 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred eccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHC--CCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHH-HHHHHh
Q 045356 81 VKCNPEPAILETLAALGSNFDCASPSEIQAVLAL--SVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQE-LDKIRK 157 (419)
Q Consensus 81 vKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~--G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~e-l~~i~~ 157 (419)
+.+..++...+.+.+...- -+-...=+..++.. |..++++ +|+..-.+.++.+.+.|..++.+.+-++ ++++.+
T Consensus 47 ~~a~~d~~~~~~l~~ad~i-~~DG~gvv~~~~~~~~~~~~~Rv--~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~ 123 (243)
T PRK03692 47 LTAEDDAELRELINAAEYK-YADGISVVRSIRKKYPQAQVSRV--AGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEA 123 (243)
T ss_pred HHhCcCHHHHHHHHhCCEE-ecCCHHHHHHHHHhcCCCCCCee--ChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHH
Confidence 3344467777777655421 11112222233333 3333443 4554445566666677766666666544 444444
Q ss_pred HCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEE
Q 045356 158 WHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQAS--GLAVIGV 208 (419)
Q Consensus 158 ~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~--~l~l~Gl 208 (419)
.....- .++|---. .+-| ++++..++++.+... .+-+.|+
T Consensus 124 ~l~~~y-~l~i~g~~--------~Gyf--~~~e~~~i~~~I~~s~~dil~Vgl 165 (243)
T PRK03692 124 KLRTQW-NVNIVGSQ--------DGYF--TPEQRQALFERIHASGAKIVTVAM 165 (243)
T ss_pred HHHHHh-CCEEEEEe--------CCCC--CHHHHHHHHHHHHhcCCCEEEEEC
Confidence 321111 23332100 0122 456666778777654 5666654
No 122
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=54.02 E-value=1.1e+02 Score=31.41 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=33.0
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLPM-VHPYYAVKCNP---EPAILETLAALGS 98 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~~-~~i~~avKan~---~~~v~~~l~~~G~ 98 (419)
||.+ ++.+.+.+-++.+++.++- ......+=+|+ +.+.++.+.+.|+
T Consensus 112 tP~~-l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~ 162 (455)
T TIGR00538 112 TPTY-LSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGF 162 (455)
T ss_pred CcCC-CCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCC
Confidence 4433 3788999999999987751 12234455666 5789999999985
No 123
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=53.29 E-value=2.1e+02 Score=27.38 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHhc-CC--eEEEEEEe
Q 045356 183 KFGANPEEVAHLLGAAQAS-GL--AVIGVAFH 211 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~-~l--~l~Glh~H 211 (419)
+++..|+++.++++.+++. ++ .-.|+|+|
T Consensus 180 ~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~H 211 (279)
T cd07947 180 PGASLPRSVPKIIYGLRKDCGVPSENLEWHGH 211 (279)
T ss_pred ccccchHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 4455556777777766542 33 23677777
No 124
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=53.17 E-value=1.9e+02 Score=26.88 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCceeeeeccCC-----cHHHHHHHHHcCC-cEEEc--CHHHHH----HHHHCCCCCCcEEEcCCCCCH
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNP-----EPAILETLAALGS-NFDCA--SPSEIQ----AVLALSVSPDRIIYANACKPV 130 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~-----~~~v~~~l~~~G~-g~~Va--S~~E~~----~a~~~G~~~~~Ii~~gp~k~~ 130 (419)
+-++++++.. ++.+...++.|+ ....++.+.+.|+ |+-+. ..+|.. .+++.|+ +.+.+..|..+.
T Consensus 66 ~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~--~~i~~i~P~T~~ 142 (242)
T cd04724 66 ELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGL--DLIFLVAPTTPD 142 (242)
T ss_pred HHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCH
Confidence 3444444432 334555567776 3567888888887 55551 345543 3344576 456777777777
Q ss_pred HHHHHHHH
Q 045356 131 SHIKYAAS 138 (419)
Q Consensus 131 ~~l~~a~~ 138 (419)
+.++.+++
T Consensus 143 ~~i~~i~~ 150 (242)
T cd04724 143 ERIKKIAE 150 (242)
T ss_pred HHHHHHHh
Confidence 77777766
No 125
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=53.07 E-value=58 Score=28.77 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcC---CcEEEcCHHHHHHHHH---CCCCCCcEEEcCCCCCHHHHH
Q 045356 61 VISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALG---SNFDCASPSEIQAVLA---LSVSPDRIIYANACKPVSHIK 134 (419)
Q Consensus 61 l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G---~g~~VaS~~E~~~a~~---~G~~~~~Ii~~gp~k~~~~l~ 134 (419)
+.+-++++++..|.... --+-+....++.+.+. .| +-+|-.|+++++.+.+ ...+.-.|..+|+. +.+.+.
T Consensus 66 i~~av~~~~~~~~~~~~-I~VEv~~~ee~~ea~~-~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI-~~~ni~ 142 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKK-IEVEVENLEEAEEALE-AGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGI-TLENIA 142 (169)
T ss_dssp HHHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHH-TT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSS-STTTHH
T ss_pred HHHHHHHHHHhCCCCce-EEEEcCCHHHHHHHHH-hCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCC-CHHHHH
Confidence 45566666666653221 3345555444444333 33 2566666666666655 22111244455544 345555
Q ss_pred HHHHCCCcEEEecC
Q 045356 135 YAASVGVNLTTFDS 148 (419)
Q Consensus 135 ~a~~~gi~~i~vdS 148 (419)
.-.+.|+..+++.+
T Consensus 143 ~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 143 EYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHTT-SEEEECH
T ss_pred HHHhcCCCEEEcCh
Confidence 55566665555554
No 126
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.16 E-value=2.5e+02 Score=27.92 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 045356 187 NPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAE 228 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~ 228 (419)
+++.+.++++.+.+.+.....|.=..|. ..|..+.+.++.
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~G~--~~P~~v~~lv~~ 179 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTVGI--LDPFSTYELVRA 179 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccCCC--CCHHHHHHHHHH
Confidence 5566666666665556555544444443 345544444443
No 127
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=51.99 E-value=1.8e+02 Score=26.06 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=48.1
Q ss_pred CCcEEEEeHHHH----HHHHHHHHHhCCCCceeeeeccCC-cHHHHHHHHHcCCcEE----EcC---HHH-HHHHHHCCC
Q 045356 50 DEPFYVLDLGVV----ISLYHQLISNLPMVHPYYAVKCNP-EPAILETLAALGSNFD----CAS---PSE-IQAVLALSV 116 (419)
Q Consensus 50 ~tP~~v~d~~~l----~~ni~~~~~~~~~~~i~~avKan~-~~~v~~~l~~~G~g~~----VaS---~~E-~~~a~~~G~ 116 (419)
+-.++.+...-. .+.++.+++.+++..+..-+|... -...++.+.+.|+.+- .++ +.| ++.+++.|+
T Consensus 24 ~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~ 103 (206)
T TIGR03128 24 YVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK 103 (206)
T ss_pred CeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCC
Confidence 344555532223 345666666666555665665442 2223666667775332 122 122 334455565
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 117 SPDRIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 117 ~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
+. -+-+.++..+.++++.+.+.|+..+.+.
T Consensus 104 ~~-~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 104 EV-QVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred EE-EEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 21 1112355444566777766676655543
No 128
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=51.88 E-value=1.9e+02 Score=26.38 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHCCCCeEEEEEecCCCCC-CC-
Q 045356 101 DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDSIQELDKIRKWHPKCELLIRIKSPVDGG-AR- 177 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g-~~- 177 (419)
.|-+.++++.+.++|- +.+++ |..+++-++.+.++|+..+ -+-+..|+....+.+-+ .+++.|....| ..
T Consensus 66 TVl~~~~a~~a~~aGA---~Fivs-P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~---~vKlFPA~~~GG~~y 138 (204)
T TIGR01182 66 TVLNPEQLRQAVDAGA---QFIVS-PGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGIT---ALKLFPAEVSGGVKM 138 (204)
T ss_pred eCCCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCC---EEEECCchhcCCHHH
Confidence 4566777777777774 45543 5566677777777776543 55667777766665432 25666543221 10
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEee
Q 045356 178 ----------YPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHI 212 (419)
Q Consensus 178 ----------~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~ 212 (419)
....---|++++.+.+.++ .+....|+-..+
T Consensus 139 ikal~~plp~i~~~ptGGV~~~N~~~~l~----aGa~~vg~Gs~L 179 (204)
T TIGR01182 139 LKALAGPFPQVRFCPTGGINLANVRDYLA----APNVACGGGSWL 179 (204)
T ss_pred HHHHhccCCCCcEEecCCCCHHHHHHHHh----CCCEEEEEChhh
Confidence 0011234788887776653 566677764443
No 129
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.84 E-value=1.1e+02 Score=31.38 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCCC-C-ceeeeeccCC---cHHHHHHHHHcCC---cEEEcCH
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLPM-V-HPYYAVKCNP---EPAILETLAALGS---NFDCASP 105 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~~-~-~i~~avKan~---~~~v~~~l~~~G~---g~~VaS~ 105 (419)
|||.+ ++.+.+.+-++.+++.++- . ..-..+=+|+ ..+.++.+.+.|+ .+.|-|.
T Consensus 100 GTPs~-l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~ 162 (430)
T PRK08208 100 GTPTL-LNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSF 162 (430)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 45554 6788899999999887751 1 2235566776 4788999999884 4555554
No 130
>PRK14847 hypothetical protein; Provisional
Probab=51.03 E-value=2.5e+02 Score=27.75 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCC-cEEE----cCHHHHHHHHHC---CC--CCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHH
Q 045356 87 PAILETLAALGS-NFDC----ASPSEIQAVLAL---SV--SPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIR 156 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~V----aS~~E~~~a~~~---G~--~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~ 156 (419)
..+++.|.+.|+ -++| +|.+|.+..++. +. ....|...... ..++++.+++.+...
T Consensus 57 l~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~-~~~dId~a~e~~~~~------------- 122 (333)
T PRK14847 57 LRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQS-RPDLIARTFEALAGS------------- 122 (333)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecC-cHHHHHHHHHHhCCC-------------
Confidence 568888888885 4444 577776655554 31 11234433443 357777777664321
Q ss_pred hHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHhcCCeEEEE--EEeeCCCC---CCHHHHHHHHH
Q 045356 157 KWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLG----AAQASGLAVIGV--AFHIGSEA---TNLDAFHAAIA 227 (419)
Q Consensus 157 ~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~----~~~~~~l~l~Gl--h~H~gs~~---~~~~~~~~~~~ 227 (419)
+...|++-+.+. ......+||.+.+++.+.+. .+++.++...|. .+.++..+ .+.+...
T Consensus 123 ---~~~~Vhi~~p~S-----d~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~---- 190 (333)
T PRK14847 123 ---PRAIVHLYNPIA-----PQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAR---- 190 (333)
T ss_pred ---CCCEEEEEecCC-----HHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHH----
Confidence 122233332221 01112589999888765443 344444432232 34444322 2333332
Q ss_pred HHHHHHHHHH-HcCC--CcceEEEeCCCCCCCCCHHHHHHHHHH
Q 045356 228 EAKTVFETAA-RLGM--TKMRVLDIGGGFACNPGFHEAASIIKD 268 (419)
Q Consensus 228 ~~~~l~~~l~-~~g~--~~~~~ldiGGG~~~~~~~~~~~~~i~~ 268 (419)
++++.+. ..|. .....|++.--.|. ....++.+.|+.
T Consensus 191 ---~~~~~a~~~~ga~r~~a~~i~l~DTVG~-~~P~~~~~~i~~ 230 (333)
T PRK14847 191 ---EVCDAVSAIWGPTPQRKMIINLPATVES-STANVYADQIEW 230 (333)
T ss_pred ---HHHHHHHHHhCCCccCCcEEEeCCcccc-CCHHHHHHHHHH
Confidence 2333222 2231 12567888877776 333555554443
No 131
>PRK15447 putative protease; Provisional
Probab=50.83 E-value=1.9e+02 Score=28.02 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=64.6
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeee----ccCCc-HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc--CCC
Q 045356 56 LDLGVVISLYHQLISNLPMVHPYYAV----KCNPE-PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA--NAC 127 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~~~~i~~av----Kan~~-~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~--gp~ 127 (419)
+..+.+.+-++.++++ +.+++.++ +.+.. ..+.+ +.+.|. ++.|.+++++..+++.|++ ++.. -..
T Consensus 45 f~~~~l~e~v~~~~~~--gkkvyva~p~i~~~~~e~~~l~~-~l~~~~~~v~v~d~g~l~~~~e~~~~---l~~d~~lni 118 (301)
T PRK15447 45 LKVGDWLELAERLAAA--GKEVVLSTLALVEAPSELKELRR-LVENGEFLVEANDLGAVRLLAERGLP---FVAGPALNC 118 (301)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEecccccCHHHHHHHHH-HHhcCCCEEEEeCHHHHHHHHhcCCC---EEEeccccc
Confidence 5778888888887764 55665433 22222 33344 444554 8999999999999997663 4432 234
Q ss_pred CCHHHHHHHHHCCCcEEEec---CHHHHHHHHhHC
Q 045356 128 KPVSHIKYAASVGVNLTTFD---SIQELDKIRKWH 159 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vd---S~~el~~i~~~~ 159 (419)
.+...+++..+.|+..+++. |++|++.+.+..
T Consensus 119 ~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 119 YNAATLALLARLGATRWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred CCHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHhc
Confidence 56788888889998766664 456777776553
No 132
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=50.49 E-value=2.6e+02 Score=27.83 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=72.6
Q ss_pred EEeHHHHHHHHHHHHHhCCCCceeeeeccCCc-------HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEEEc--
Q 045356 55 VLDLGVVISLYHQLISNLPMVHPYYAVKCNPE-------PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRIIYA-- 124 (419)
Q Consensus 55 v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~-------~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii~~-- 124 (419)
.+..+.+++-++..+++ +.+++.++=+... ...++.+.+.|+ ++.++.++=+..+++.|-+ -+++++
T Consensus 45 nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~-l~ih~S~q 121 (347)
T COG0826 45 NFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPD-LPIHVSTQ 121 (347)
T ss_pred cCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCC-CcEEEeee
Confidence 35555666666666554 5667766655542 467788889998 9999999999999999832 356654
Q ss_pred CCCCCHHHHHHHHHCCCcEEEe---cCHHHHHHHHhHCC
Q 045356 125 NACKPVSHIKYAASVGVNLTTF---DSIQELDKIRKWHP 160 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~v---dS~~el~~i~~~~~ 160 (419)
....+.+.+++..+.|+..+++ -|.+|+..+.+..+
T Consensus 122 ~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 122 ANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred EecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCC
Confidence 2345788999999999765433 45777777777665
No 133
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=49.70 E-value=61 Score=32.10 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=14.7
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCc
Q 045356 120 RIIYANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~ 142 (419)
.|+-+|.+.+.+++.+.+..|+.
T Consensus 291 pIig~GGI~s~eda~e~l~aGAd 313 (344)
T PRK05286 291 PIIGVGGIDSAEDAYEKIRAGAS 313 (344)
T ss_pred CEEEECCCCCHHHHHHHHHcCCC
Confidence 35666666677776666666654
No 134
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=49.39 E-value=95 Score=30.94 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc------------CHHHHHHHHH-CCCCCCcEEEcCCCC
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA------------SPSEIQAVLA-LSVSPDRIIYANACK 128 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va------------S~~E~~~a~~-~G~~~~~Ii~~gp~k 128 (419)
++++.+++.++ +=..+|---+++-++.+.+.|+ +++|+ +..-+..+++ .+-+ -.|+..|.+.
T Consensus 215 ~~i~~~~~~~~---~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~-~~i~~dgGir 290 (356)
T PF01070_consen 215 DDIEWIRKQWK---LPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDD-IPIIADGGIR 290 (356)
T ss_dssp HHHHHHHHHCS---SEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTS-SEEEEESS--
T ss_pred HHHHHHhcccC---CceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCC-eeEEEeCCCC
Confidence 56777887764 2355888888999999999999 89998 3333333343 2322 4688999999
Q ss_pred CHHHHHHHHHCCCcEEEec
Q 045356 129 PVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vd 147 (419)
+..++-.|+..|...+.+.
T Consensus 291 ~g~Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 291 RGLDVAKALALGADAVGIG 309 (356)
T ss_dssp SHHHHHHHHHTT-SEEEES
T ss_pred CHHHHHHHHHcCCCeEEEc
Confidence 9999999999998864443
No 135
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=49.37 E-value=2.1e+02 Score=26.07 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHHCCCCCCcEE------------EcCCCCCHHHHHHHHHCCCcEEEecC
Q 045356 87 PAILETLAALGS-NFDCASPSEIQAVLALSVSPDRII------------YANACKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~~E~~~a~~~G~~~~~Ii------------~~gp~k~~~~l~~a~~~gi~~i~vdS 148 (419)
..+++...+.|+ ++.+.+.++++.+++.- . -.++ +.++ ..++++.+.+.|+..+.+|.
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~-~-~Pil~~~~~d~~~~~~~~~~--~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVV-D-VPIIGIIKRDYPDSEVYITP--TLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhC-C-CCEEEEEecCCCCCCceECC--CHHHHHHHHHcCCCEEEEeC
Confidence 567787888887 89999999999888752 1 1222 2232 45789999999988666543
No 136
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=48.84 E-value=2.1e+02 Score=30.05 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=9.7
Q ss_pred EEcCHHHHHHHHHCCC
Q 045356 101 DCASPSEIQAVLALSV 116 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~ 116 (419)
+|+|.++++.+.++|+
T Consensus 296 ~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 296 NVVTMYQAQNLIQAGV 311 (505)
T ss_pred cCCCHHHHHHHHHcCc
Confidence 4666666666666665
No 137
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=48.78 E-value=3.7e+02 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=14.6
Q ss_pred HHHHHHHHCCCcEE-EecCHHHHH
Q 045356 131 SHIKYAASVGVNLT-TFDSIQELD 153 (419)
Q Consensus 131 ~~l~~a~~~gi~~i-~vdS~~el~ 153 (419)
.+++.++++|+..+ ++|++.+++
T Consensus 101 ~~v~~a~~~Gid~~rifd~lnd~~ 124 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAMNDPR 124 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeCCcHH
Confidence 45777888888754 555555444
No 138
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=48.62 E-value=94 Score=32.00 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=31.4
Q ss_pred EeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC
Q 045356 56 LDLGVVISLYHQLISNLP-MVHPYYAVKCNP---EPAILETLAALGS 98 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~-~~~i~~avKan~---~~~v~~~l~~~G~ 98 (419)
++.+.+.+-++.+++.++ ....-+.+=+|+ +.+.++.+.+.|+
T Consensus 117 l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~ 163 (453)
T PRK13347 117 LNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGF 163 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCC
Confidence 567889999999988775 112234456776 5789999999985
No 139
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.34 E-value=2.5e+02 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
..|+++.++++.+++ .++ -.|+|+|
T Consensus 175 ~~P~~v~~lv~~l~~~~~~-~l~~H~H 200 (275)
T cd07937 175 LTPYAAYELVKALKKEVGL-PIHLHTH 200 (275)
T ss_pred CCHHHHHHHHHHHHHhCCC-eEEEEec
Confidence 378899999988875 353 4678888
No 140
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=48.13 E-value=1.8e+02 Score=29.24 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCeEEEEEE----ee----CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEE--eCCCCCCC--
Q 045356 190 EVAHLLGAAQASGLAVIGVAF----HI----GSE-ATNLDAFHAAIAEAKTVFETAARLGMTKMRVLD--IGGGFACN-- 256 (419)
Q Consensus 190 e~~~~l~~~~~~~l~l~Glh~----H~----gs~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ld--iGGG~~~~-- 256 (419)
++.++.+.+++.|+.+.++-. |- ||- ..|++.-+.+++.+++.++..+++| -+. ++ +|-|+..+
T Consensus 70 d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLG-a~~--I~iW~~DG~~~~g~ 146 (378)
T TIGR02635 70 DYEELARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTG-SKD--ISLWLADGTNYPGQ 146 (378)
T ss_pred CHHHHHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCe--EEEecCCcCcCCcc
Confidence 345555556778888886433 32 543 2455555677888888888888888 432 33 34554431
Q ss_pred CCHHHHHHHHHHHHHhhCCCccCCCccEEEEcC
Q 045356 257 PGFHEAASIIKDAIQTYFPNETAAGHLSVISEP 289 (419)
Q Consensus 257 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~Ep 289 (419)
.++....+.+.++|.+.+... .+..++.+||
T Consensus 147 ~~~~~a~~rl~esL~eI~~~~--~~~v~~~iE~ 177 (378)
T TIGR02635 147 DDFRSRKDRLEESLAEVYEHL--GADMRLLIEY 177 (378)
T ss_pred cCHHHHHHHHHHHHHHHHHhC--cCCCEEEEec
Confidence 122333355555665554321 1348999987
No 141
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.69 E-value=3.5e+02 Score=28.19 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-cEE-----
Q 045356 34 GLLEFMESIILKRQELDEPFYVLDLG-----VVISLYHQLISNLPMVHPYYAVKCN-PEPAILETLAALGS-NFD----- 101 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~v~d~~-----~l~~ni~~~~~~~~~~~i~~avKan-~~~~v~~~l~~~G~-g~~----- 101 (419)
...+.++.++. .+-..+++|.. .+.+-++++++.+|++.++. -| ...+-++.|.+.|+ .+.
T Consensus 225 ~~~~ra~~Lv~----aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 225 DVGGKAKALLD----AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred cHHHHHHHHHH----hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 34455555552 35555666653 56677788888777765543 33 35677777888876 555
Q ss_pred ---Ec-------------CHHHHHH-HHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 102 ---CA-------------SPSEIQA-VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 102 ---Va-------------S~~E~~~-a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
|. +..|+.. +.+.|+ .|+-.|.++++.++.+|+..|...+.+.++
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~---~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGG---HVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred CccccCccccCCCCchHHHHHHHHHHHHHcCC---cEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 21 1223322 233343 477788888889999998888876677664
No 142
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=47.58 E-value=1.6e+02 Score=30.23 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLPM-VHPYYAVKCNP---EPAILETLAALGS 98 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~~-~~i~~avKan~---~~~v~~~l~~~G~ 98 (419)
|||.+ ++.+.|.+-++.+++.++- ...-..+-+|+ ..+.++.+.+.|+
T Consensus 111 GtPs~-l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~ 162 (453)
T PRK09249 111 GTPTF-LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGF 162 (453)
T ss_pred ccccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCC
Confidence 46644 5889999999999888651 12345566777 4789999999985
No 143
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=46.81 E-value=2.1e+02 Score=27.60 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCCCcEEEcCCCC-CHHHHHHHHHCCCcEEEecCHHH------HHHHHhHCC--CCeEEEEEecCCCCCC---CCCCCCC
Q 045356 116 VSPDRIIYANACK-PVSHIKYAASVGVNLTTFDSIQE------LDKIRKWHP--KCELLIRIKSPVDGGA---RYPLDSK 183 (419)
Q Consensus 116 ~~~~~Ii~~gp~k-~~~~l~~a~~~gi~~i~vdS~~e------l~~i~~~~~--~~~v~lRv~~~~~~g~---~~~~~sR 183 (419)
+.++++++.|--. ++++.+++-+.|+..+..+.+.+ ++++.+..+ ...+.|-++++.-... ...+...
T Consensus 163 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPgv~tp~p 242 (300)
T TIGR01229 163 ISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPATGTPVV 242 (300)
T ss_pred cCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCCCCCCCC
Confidence 3556788877533 67788888888887655554433 122222221 1256776666542111 1234478
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q 045356 184 FGANPEEVAHLLGAAQASGLAVIGVAFH 211 (419)
Q Consensus 184 fGi~~ee~~~~l~~~~~~~l~l~Glh~H 211 (419)
.|++..|+..+++.+... -++.|+-+-
T Consensus 243 gGl~~~e~~~~l~~i~~~-~~v~g~Div 269 (300)
T TIGR01229 243 GGLTFREGLLIMEMLYET-GLLTALDVV 269 (300)
T ss_pred CCCCHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 999999999999887543 245555543
No 144
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=46.49 E-value=68 Score=32.18 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEE-------eHHHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCCcEEEcCHH
Q 045356 35 LLEFMESIILKRQELDEPFYVL-------DLGVVISLYHQLISNLPMVHPYYAVKCN-PEPAILETLAALGSNFDCASPS 106 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~tP~~v~-------d~~~l~~ni~~~~~~~~~~~i~~avKan-~~~~v~~~l~~~G~g~~VaS~~ 106 (419)
..+.+++++ +..+-|+.+. |.+.++.-++.+... +. +.|+.-.. ....++++..+.|+.+-|.|+.
T Consensus 176 ~a~~vk~V~---~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kp-LL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~ 249 (389)
T TIGR00381 176 AAKVLEDVL---QAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RC-LLASANLDLDYEKIANAAKKYGHVVLSWTIM 249 (389)
T ss_pred HHHHHHHHH---HhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--Cc-EEEecCchhhHHHHHHHHHHhCCeEEEEcCC
Confidence 344555554 3578899988 888888877666432 22 34444444 5678999999999999999966
Q ss_pred HHHHHHH-------CCCCCCcEEEcC
Q 045356 107 EIQAVLA-------LSVSPDRIIYAN 125 (419)
Q Consensus 107 E~~~a~~-------~G~~~~~Ii~~g 125 (419)
|+..+.. +|+++++|++-.
T Consensus 250 Din~ak~Ln~kL~~~Gv~~eDIVlDP 275 (389)
T TIGR00381 250 DINMQKTLNRYLLKRGLMPRDIVMDP 275 (389)
T ss_pred cHHHHHHHHHHHHHcCCCHHHEEEcC
Confidence 6655544 699988999863
No 145
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.48 E-value=1.4e+02 Score=27.73 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEeeCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC-CCCHHHH
Q 045356 191 VAHLLGAAQASGLAVIGVAFHIGSEA-------TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC-NPGFHEA 262 (419)
Q Consensus 191 ~~~~l~~~~~~~l~l~Glh~H~gs~~-------~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~-~~~~~~~ 262 (419)
+.++.+.+++.|+.+.+++...+... ..++...+..+.++++++.++..| . +.|.+..|... ..+.++.
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg-~--~~i~~~~g~~~~~~~~~~~ 117 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALG-C--PQVNCLAGKRPAGVSPEEA 117 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhC-C--CEEEECcCCCCCCCCHHHH
Confidence 34455556678999999876543210 111112233455666777788877 3 35555555322 2223333
Q ss_pred HHHHHHHH---HhhCCCccCCCccEEEEcCc
Q 045356 263 ASIIKDAI---QTYFPNETAAGHLSVISEPG 290 (419)
Q Consensus 263 ~~~i~~~l---~~~~~~~~~~~~~~li~EpG 290 (419)
.+.+.+.+ .++..+. | +++.+||.
T Consensus 118 ~~~~~~~l~~l~~~A~~~-g---i~l~lE~~ 144 (254)
T TIGR03234 118 RATLVENLRYAADALDRI-G---LTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHHHHHHhc-C---CEEEEEEC
Confidence 22222222 2333332 3 88999973
No 146
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=46.24 E-value=85 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=27.4
Q ss_pred cceEEEeCCCCCCCCCHHHHHHHHHHHHHhhCCCccCCCccEEEEc--Ccch
Q 045356 243 KMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISE--PGRF 292 (419)
Q Consensus 243 ~~~~ldiGGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~E--pGR~ 292 (419)
.+.-|.+|||.|+-.+ .+-.+.+...|.+.++. ..+..++-+| |+.+
T Consensus 87 ~v~ti~~GGGTPslL~-~~~l~~ll~~l~~~~~~--~~~~~EitiE~nP~~~ 135 (416)
T COG0635 87 EVKTIYFGGGTPSLLS-PEQLERLLKALRELFND--LDPDAEITIEANPGTV 135 (416)
T ss_pred eEEEEEECCCccccCC-HHHHHHHHHHHHHhccc--CCCCceEEEEeCCCCC
Confidence 4888999999998333 22334455566666631 1122455555 8853
No 147
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.06 E-value=62 Score=28.18 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=53.2
Q ss_pred CcccccccccccCccccCCcceeeecCCCCHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCCCCceee
Q 045356 5 PKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYY 79 (419)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~ 79 (419)
-|.||...-|.|-|-+++|--+..-. ++++.+-++.++++ ++.||++......++-++.|++ .+..++-
T Consensus 16 DkRiTTHV~LtARAfGA~gil~~~e~-De~v~esv~dVv~r---wGG~F~v~~~~nw~~~i~~wk~--gG~vvHL 84 (179)
T COG1303 16 DKRITTHVALTARAFGADGILLDGEE-DEKVVESVEDVVER---WGGPFFVKFGVNWRKVIREWKE--GGIVVHL 84 (179)
T ss_pred cccchhhhhhhhHhhCCceEEEcCcc-cHHHHHHHHHHHHh---cCCCEEEEEcccHHHHHHHhhc--CCEEEEE
Confidence 36788888899999988887665443 46777778888766 5999999999888888888887 4555543
No 148
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=45.56 E-value=1.8e+02 Score=24.38 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC
Q 045356 193 HLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 193 ~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~ 255 (419)
++++.+.+.+..+.|++...++.. ..+.++.+.+++.|+.++ .+=+||+..+
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~----------~~~~~~~~~l~~~gl~~v-~vivGG~~~i 92 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGE----------IDCKGLREKCDEAGLKDI-LLYVGGNLVV 92 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCH----------HHHHHHHHHHHHCCCCCC-eEEEECCCCC
Confidence 455555667889999988876532 223445667777772243 3556888765
No 149
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=45.03 E-value=2.7e+02 Score=26.25 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCC-cEEE--------cCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEec----CHHHHH
Q 045356 87 PAILETLAALGS-NFDC--------ASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFD----SIQELD 153 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~V--------aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd----S~~el~ 153 (419)
..+++...+.|+ ++-| .|++.+..+++. ++. .|+.-.-+.++.++..+...|...+.+. +.++++
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~i-Pvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~ 150 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSL-PVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLK 150 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCC-CEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHH
Confidence 577888888898 8999 999999999886 322 3554444456789999999998754332 345666
Q ss_pred HHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEE
Q 045356 154 KIRKWHP--KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVA 209 (419)
Q Consensus 154 ~i~~~~~--~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh 209 (419)
.+.+.+. ...+.+.++. .+|+. .+...+..+.|++
T Consensus 151 ~li~~a~~lGl~~lvevh~-----------------~~E~~----~A~~~gadiIgin 187 (260)
T PRK00278 151 ELLDYAHSLGLDVLVEVHD-----------------EEELE----RALKLGAPLIGIN 187 (260)
T ss_pred HHHHHHHHcCCeEEEEeCC-----------------HHHHH----HHHHcCCCEEEEC
Confidence 6665543 3445555553 23432 2335678899975
No 150
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.91 E-value=2.6e+02 Score=25.90 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=62.2
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHCCCCeEEEEEecCCCCCC---
Q 045356 101 DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDSIQELDKIRKWHPKCELLIRIKSPVDGGA--- 176 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~--- 176 (419)
.|-|.++++.+.++|- +.+++ |..+++-++.+.++|+..+ -+-+..|+....+.+-+. +++.|....|.
T Consensus 77 TVl~~e~a~~a~~aGA---~FiVs-P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~---vKlFPA~~~G~~~i 149 (222)
T PRK07114 77 SIVDAATAALYIQLGA---NFIVT-PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEI---VKLFPGSVYGPGFV 149 (222)
T ss_pred eCcCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCE---EEECcccccCHHHH
Confidence 4667888888888884 56665 6677888888888887644 677888888877765332 66666432220
Q ss_pred -----CC---CCCCCCCCCH--HHHHHHHHHHHhcCCeEEEEEEe
Q 045356 177 -----RY---PLDSKFGANP--EEVAHLLGAAQASGLAVIGVAFH 211 (419)
Q Consensus 177 -----~~---~~~sRfGi~~--ee~~~~l~~~~~~~l~l~Glh~H 211 (419)
.. ...---|+++ +.+.+.++ .|....|+-.-
T Consensus 150 kal~~p~p~i~~~ptGGV~~~~~n~~~yl~----aGa~avg~Gs~ 190 (222)
T PRK07114 150 KAIKGPMPWTKIMPTGGVEPTEENLKKWFG----AGVTCVGMGSK 190 (222)
T ss_pred HHHhccCCCCeEEeCCCCCcchhcHHHHHh----CCCEEEEEChh
Confidence 01 0112347776 56555543 56677776444
No 151
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=44.89 E-value=2.5e+02 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=13.3
Q ss_pred CHHHHHHHHHCCCcE--EEecCHHHHHHHHh
Q 045356 129 PVSHIKYAASVGVNL--TTFDSIQELDKIRK 157 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~--i~vdS~~el~~i~~ 157 (419)
+++.++.+-+.|+.+ .++++.++++++.+
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~ 220 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAEDAKRLIE 220 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 344444444444432 24555555555443
No 152
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.85 E-value=41 Score=32.15 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=17.6
Q ss_pred CHHHHHHHHHCCCcEEEecC--HHHHHHHHhH
Q 045356 129 PVSHIKYAASVGVNLTTFDS--IQELDKIRKW 158 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~ 158 (419)
+.+++..|++.|..++.+|+ ++|++++.+.
T Consensus 197 sle~~~eAl~agaDiImLDNm~~e~~~~av~~ 228 (280)
T COG0157 197 SLEEAEEALEAGADIIMLDNMSPEELKEAVKL 228 (280)
T ss_pred CHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 45666666666666666665 3455554443
No 153
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=44.55 E-value=94 Score=28.18 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=50.8
Q ss_pred cHHHHHHHHHc--CC--cE-EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHC
Q 045356 86 EPAILETLAAL--GS--NF-DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDSIQELDKIRKWH 159 (419)
Q Consensus 86 ~~~v~~~l~~~--G~--g~-~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~ 159 (419)
..++++.+.+. ++ |+ .|-+.++++.+.++|. +.+++ |..+++-++.+.++|+..+ -+-+..|+....+.+
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA---~FivS-P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G 121 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA---QFIVS-PGFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAG 121 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT----SEEEE-SS--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCC
Confidence 34555555532 22 22 3567788888888884 56765 5678888899999988654 688899999887775
Q ss_pred CCCeEEEEEecC
Q 045356 160 PKCELLIRIKSP 171 (419)
Q Consensus 160 ~~~~v~lRv~~~ 171 (419)
-+ .+++.|.
T Consensus 122 ~~---~vK~FPA 130 (196)
T PF01081_consen 122 AD---IVKLFPA 130 (196)
T ss_dssp -S---EEEETTT
T ss_pred CC---EEEEecc
Confidence 43 2777774
No 154
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=44.43 E-value=1e+02 Score=30.70 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=56.9
Q ss_pred CCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCC-----CHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecC
Q 045356 97 GSNFDCASPSEIQAVLALSVSPDRIIYANACK-----PVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 97 G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k-----~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
|+.++|...+++..+.++-..++-|+.+.+.. +...|..|-..|.++=+|.|.-++-++++.+|..++ +=+.++
T Consensus 61 GCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~SL~~ara~GadVriVYSpldAl~iA~~nP~k~v-VF~avG 139 (364)
T PRK15062 61 GCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGSKGSLLEAKAEGADVRIVYSPLDALKIARENPDKEV-VFFAIG 139 (364)
T ss_pred CCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCCcCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeE-EEEecC
Confidence 78999999999999999877666666553211 345788887788775589999999999999887654 334554
Q ss_pred CC
Q 045356 172 VD 173 (419)
Q Consensus 172 ~~ 173 (419)
++
T Consensus 140 FE 141 (364)
T PRK15062 140 FE 141 (364)
T ss_pred ch
Confidence 44
No 155
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.94 E-value=1.8e+02 Score=26.65 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 187 NPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 187 ~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
.|+++.++++.+++ ..-...|+|+|
T Consensus 164 ~P~~v~~lv~~~~~~~~~~~l~~H~H 189 (237)
T PF00682_consen 164 TPEDVAELVRALREALPDIPLGFHAH 189 (237)
T ss_dssp -HHHHHHHHHHHHHHSTTSEEEEEEB
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEec
Confidence 55566666665543 22134455555
No 156
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.59 E-value=1.9e+02 Score=24.35 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHCCCCCCcEEEcCCCCCHHHHHHH-HHCCCcEEEecC-----HHHHHHHHhHCCCCeE-EEEEecCCCCCCCCCCCC
Q 045356 110 AVLALSVSPDRIIYANACKPVSHIKYA-ASVGVNLTTFDS-----IQELDKIRKWHPKCEL-LIRIKSPVDGGARYPLDS 182 (419)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~~~~l~~a-~~~gi~~i~vdS-----~~el~~i~~~~~~~~v-~lRv~~~~~~g~~~~~~s 182 (419)
.++.+|| +++..|...+++++-.+ .+.++..+.+.+ ...+..+.+..+...+ .+.|-. |+
T Consensus 22 ~L~~~Gf---eVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv----------GG 88 (128)
T cd02072 22 AFTEAGF---NVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV----------GG 88 (128)
T ss_pred HHHHCCC---EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE----------EC
Confidence 4567787 47888888887777555 566776555444 3344443332211111 133333 24
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 045356 183 KFGANPEEVAHLLGAAQASGL 203 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~~l 203 (419)
-..++.++..+..+.+++.|+
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv 109 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGF 109 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCC
Confidence 444555555555555555555
No 157
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.34 E-value=27 Score=32.08 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHHHCCCcE---E---EecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 045356 134 KYAASVGVNL---T---TFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIG 207 (419)
Q Consensus 134 ~~a~~~gi~~---i---~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~G 207 (419)
..+.+.|... + -..+++|+..+++.+.+..+ .+.|. -||+.+.+.++++.+...++...
T Consensus 142 aml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~--~lEPT------------GGIdl~Nf~~I~~i~ldaGv~kv- 206 (236)
T TIGR03581 142 AMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF--YLEPT------------GGIDLDNFEEIVQIALDAGVEKV- 206 (236)
T ss_pred HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC--ccCCC------------CCccHHhHHHHHHHHHHcCCCee-
Confidence 3444566542 2 34678888888877544443 33432 37899999999998888887764
Q ss_pred EEEeeCCC
Q 045356 208 VAFHIGSE 215 (419)
Q Consensus 208 lh~H~gs~ 215 (419)
.=|+-|.
T Consensus 207 -iPHIYss 213 (236)
T TIGR03581 207 -IPHVYSS 213 (236)
T ss_pred -cccccee
Confidence 4454344
No 158
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.32 E-value=2.1e+02 Score=24.05 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=52.5
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHH---------HHHHHHCCCCCCcEEEcCC
Q 045356 57 DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCASPSE---------IQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 57 d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E---------~~~a~~~G~~~~~Ii~~gp 126 (419)
|...+..|+-...=...++++.+.-.-.+...+++...+.+. -+.++|..+ +..+++.|.+ +..++.|+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~-~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP-DILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC-CCEEEEeC
Confidence 334455554332211247787777776777788888888887 566666553 2223445753 34456665
Q ss_pred CCCHHHHHHHHHCCCcE
Q 045356 127 CKPVSHIKYAASVGVNL 143 (419)
Q Consensus 127 ~k~~~~l~~a~~~gi~~ 143 (419)
..++++.+...+.|+.-
T Consensus 92 ~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAE 108 (132)
T ss_pred CCChHhHHHHHHCCCCE
Confidence 56777788888889863
No 159
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=42.20 E-value=2.8e+02 Score=26.59 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEE----EeHHHHHHHHHHHHHh
Q 045356 33 GGLLEFMESIILKRQELDEPFYV----LDLGVVISLYHQLISN 71 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~tP~~v----~d~~~l~~ni~~~~~~ 71 (419)
.+++.+++++....++.+.|+.+ .+.+.+.+..++++++
T Consensus 74 ~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~a 116 (301)
T PRK07259 74 PGVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKA 116 (301)
T ss_pred cCHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhcc
Confidence 44555666554433344555544 3666666666666554
No 160
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=41.89 E-value=3.2e+02 Score=27.52 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEee--------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCC-CCCC--
Q 045356 191 VAHLLGAAQASGLAVIGVAFHI--------GS-EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFA-CNPG-- 258 (419)
Q Consensus 191 ~~~~l~~~~~~~l~l~Glh~H~--------gs-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~-~~~~-- 258 (419)
+.++-+.+++.||.+.++.+.+ |+ ...+.+..+.+++.+++.++.++++| -+ .+.+=+|.. .+++
T Consensus 70 ~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLG-a~--~v~v~~G~~g~~~~~~ 146 (382)
T TIGR02631 70 VRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELG-AE--TYVVWGGREGAEYDGA 146 (382)
T ss_pred HHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CC--EEEEccCCCCCcCccc
Confidence 3455556677899988766521 11 12355555677888888888888887 33 344444433 2222
Q ss_pred --HHHHHHHHHHHHHhh---CCCccCCCccEEEEcCc
Q 045356 259 --FHEAASIIKDAIQTY---FPNETAAGHLSVISEPG 290 (419)
Q Consensus 259 --~~~~~~~i~~~l~~~---~~~~~~~~~~~li~EpG 290 (419)
.++..+...+.|.+. ..+. | ..+++.+||=
T Consensus 147 ~d~~~a~~~~~e~L~~lae~A~~~-G-~GV~laLEp~ 181 (382)
T TIGR02631 147 KDVRAALDRMREALNLLAAYAEDQ-G-YGLRFALEPK 181 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhh-C-CCcEEEEccC
Confidence 233334444444333 2221 1 1278999973
No 161
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.89 E-value=3.1e+02 Score=25.96 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=39.2
Q ss_pred HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHH
Q 045356 149 IQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIA 227 (419)
Q Consensus 149 ~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~ 227 (419)
++.+..+.+.++...+.+++++. .-|+.+++.+.++++.+...+..-..+-=..|. ..|....+.++
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~--~~P~~v~~~~~ 177 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSE----------DSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGI--ATPRQVYELVR 177 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEE----------eeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC--CCHHHHHHHHH
Confidence 33344444444444555666663 346677888888888887777665555544443 45655444333
No 162
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.57 E-value=3.3e+02 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeeCC
Q 045356 189 EEVAHLLGAAQASGLAVIGVAFHIGS 214 (419)
Q Consensus 189 ee~~~~l~~~~~~~l~l~Glh~H~gs 214 (419)
.++.+++..++..++.+. +|.|+.+
T Consensus 266 ~~~~~~~~~a~~~gi~~~-~~~~~~~ 290 (316)
T cd03319 266 TEALRIADLARAAGLKVM-VGCMVES 290 (316)
T ss_pred HHHHHHHHHHHHcCCCEE-EECchhh
Confidence 356677777777777665 5677543
No 163
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.34 E-value=3.1e+02 Score=25.76 Aligned_cols=101 Identities=10% Similarity=-0.031 Sum_probs=52.9
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCCC---CceeeeeccCCc---HHHHHHHHHcCC-cEEEc----CHHHHHHHHHCCCCCC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLPM---VHPYYAVKCNPE---PAILETLAALGS-NFDCA----SPSEIQAVLALSVSPD 119 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~~---~~i~~avKan~~---~~v~~~l~~~G~-g~~Va----S~~E~~~a~~~G~~~~ 119 (419)
..+++.+.+. .+.++++++..|+ +.+.+.+..... ....+.+...|+ ++... +..=+..+.+.|..
T Consensus 149 ~~v~i~SF~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~Gl~-- 225 (265)
T cd08564 149 LQVHFSSFLH-YDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWTEEFVKKAHENGLK-- 225 (265)
T ss_pred CCEEEEecCc-hhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhhHHHHHHHHHcCCE--
Confidence 4555544433 2333455555554 566666544321 123344444444 33332 33335566667763
Q ss_pred cEEEcC-C-CCCHHHHHHHHHCCCcEEEecCHHHHHH
Q 045356 120 RIIYAN-A-CKPVSHIKYAASVGVNLTTFDSIQELDK 154 (419)
Q Consensus 120 ~Ii~~g-p-~k~~~~l~~a~~~gi~~i~vdS~~el~~ 154 (419)
-.+|+. + ..+.++++.+++.|+.-+..|..+.+..
T Consensus 226 v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p~~~~~ 262 (265)
T cd08564 226 VMTYFDEPVNDNEEDYKVYLELGVDCICPNDPVLLVN 262 (265)
T ss_pred EEEecCCCCCCCHHHHHHHHHcCCCEEEcCCHHHHHH
Confidence 345541 1 2356788888888887666776665544
No 164
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=41.19 E-value=2.7e+02 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=15.5
Q ss_pred ceeeeeccCCc-HHHHHHHHHcCCcEEE
Q 045356 76 HPYYAVKCNPE-PAILETLAALGSNFDC 102 (419)
Q Consensus 76 ~i~~avKan~~-~~v~~~l~~~G~g~~V 102 (419)
.+...+.+... +.+++++.+.|+.+-+
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~ 125 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVL 125 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence 34555555432 6677777777765444
No 165
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.90 E-value=1.4e+02 Score=29.56 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCC
Q 045356 161 KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSE 215 (419)
Q Consensus 161 ~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~ 215 (419)
...+.+|++.... ..-|++.++..++++.+++.++.+ ||+|.|+.
T Consensus 207 ~~~v~vRis~~d~--------~~~G~~~~e~~~i~~~l~~~gvD~--i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISASDY--------HPGGLTVQDYVQYAKWMKEQGVDL--IDVSSGAV 251 (337)
T ss_pred CCCeEEEeccccc--------CCCCCCHHHHHHHHHHHHHcCCCE--EEeCCCCC
Confidence 4578999997421 223888999999999888777655 67777763
No 166
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=40.64 E-value=3.1e+02 Score=27.21 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEcC---------------HHHHHHHHH-CCCCCCcEEEcC
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCAS---------------PSEIQAVLA-LSVSPDRIIYAN 125 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS---------------~~E~~~a~~-~G~~~~~Ii~~g 125 (419)
+.++.+++..+ +-..+|--.++..++.+.+.|+ ++.|+. +.|+..+.. .|-+ -.|+..|
T Consensus 203 ~~i~~l~~~~~---~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~-~~vi~~G 278 (344)
T cd02922 203 DDIKWLRKHTK---LPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDK-IEVYVDG 278 (344)
T ss_pred HHHHHHHHhcC---CcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCC-ceEEEeC
Confidence 34555555432 2345776667778888888887 777655 445544332 2311 3577778
Q ss_pred CCCCHHHHHHHHHCCCcEEEecC
Q 045356 126 ACKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 126 p~k~~~~l~~a~~~gi~~i~vdS 148 (419)
.+.+..++-+++..|...+.+.+
T Consensus 279 GIr~G~Dv~kalaLGA~aV~iG~ 301 (344)
T cd02922 279 GVRRGTDVLKALCLGAKAVGLGR 301 (344)
T ss_pred CCCCHHHHHHHHHcCCCEEEECH
Confidence 88888888888888877555543
No 167
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.59 E-value=1.4e+02 Score=27.20 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=42.8
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHCCCCeEEEEEecC
Q 045356 101 DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDSIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
.|-+.++++.+.++|- +.+++ |..+++-++.+.++|+..+ -+-+..|+....+.+-+. +++.|.
T Consensus 62 TVl~~e~a~~ai~aGA---~FivS-P~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~---vK~FPa 126 (201)
T PRK06015 62 TILNAKQFEDAAKAGS---RFIVS-PGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTV---LKFFPA 126 (201)
T ss_pred eCcCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCE---EEECCc
Confidence 4566777777777774 46654 5667777788888877543 666777777766664322 666664
No 168
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=40.13 E-value=2.4e+02 Score=27.74 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-cEEEcC
Q 045356 59 GVVISLYHQLISNLPMVHPYYAVKCN---PEPAILETLAALGS-NFDCAS 104 (419)
Q Consensus 59 ~~l~~ni~~~~~~~~~~~i~~avKan---~~~~v~~~l~~~G~-g~~VaS 104 (419)
+.+.++++.+++.++ + =..+|-. -....++.+.+.|+ +++|+.
T Consensus 165 ~~~le~i~~i~~~~~-v--PVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 165 KGWLEKIAEICSQLS-V--PVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHHhcC-C--CEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 445677888887652 1 1335644 35788888888887 777765
No 169
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=39.92 E-value=3.1e+02 Score=26.20 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEE----EeHHHHHHHHHHHHHh
Q 045356 33 GGLLEFMESIILKRQELDEPFYV----LDLGVVISLYHQLISN 71 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~tP~~v----~d~~~l~~ni~~~~~~ 71 (419)
.++..+++.+....+..+.|+.+ .+.+.+.+-.+++++.
T Consensus 72 ~g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~ 114 (296)
T cd04740 72 PGVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADA 114 (296)
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHc
Confidence 34455555554433334556544 3566666666666655
No 170
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.69 E-value=1.9e+02 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.0
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHC
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASV 139 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (419)
+-++|.|.+|+..+.++|. +.|.+-+ .++++++.+++.
T Consensus 211 IeVEv~sleea~ea~~~ga--DiI~LDn--~s~e~~~~av~~ 248 (296)
T PRK09016 211 VEVEVENLDELDQALKAGA--DIIMLDN--FTTEQMREAVKR 248 (296)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEeCC--CChHHHHHHHHh
Confidence 5789999999999999996 4455544 467999999763
No 171
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=39.66 E-value=2e+02 Score=28.25 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred EeHHHHHHHHHHHHHhCCC---CceeeeeccCCcH----------HHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEE
Q 045356 56 LDLGVVISLYHQLISNLPM---VHPYYAVKCNPEP----------AILETLAALGSNFDCASPSEIQAVLALSVSPDRII 122 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~~---~~i~~avKan~~~----------~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii 122 (419)
.+.+.+++.++++++...+ +.+++..+..... .+.+...+.+.. -...+..+.+.+ ++-++
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~v~ 118 (330)
T PF03060_consen 45 LTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVP----FEEQLDVALEAK--PDVVS 118 (330)
T ss_dssp SSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-S----HHHHHHHHHHS----SEEE
T ss_pred cChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcc----cccccccccccc--eEEEE
Confidence 4568899999999887642 2222221111111 234555566655 244456666664 35566
Q ss_pred EcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHHhHCCC
Q 045356 123 YANACKPVSHIKYAASVGVNLT-TFDSIQELDKIRKWHPK 161 (419)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~~~~~~ 161 (419)
+.....+++.++.+-+.|+.++ .+.|.+++.++.+...+
T Consensus 119 ~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D 158 (330)
T PF03060_consen 119 FGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGAD 158 (330)
T ss_dssp EESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-S
T ss_pred eecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCC
Confidence 6554444778888888898654 89999999998887644
No 172
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.60 E-value=2.1e+02 Score=23.37 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCCceeeeeccCCcHHHHHHHHHcCC-cEEEcCH--------HH-HHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCc
Q 045356 73 PMVHPYYAVKCNPEPAILETLAALGS-NFDCASP--------SE-IQAVLALSVSPDRIIYANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 73 ~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~--------~E-~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~ 142 (419)
.+.++.|.-...+...+++...+.+. -+.+++. .| ++.+++.|.+ +..++.|....+++.....+.|+.
T Consensus 26 ~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 26 AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHCCCC
Confidence 47888888888888899999998887 4455543 22 4455566764 333444444567778888899986
Q ss_pred E
Q 045356 143 L 143 (419)
Q Consensus 143 ~ 143 (419)
-
T Consensus 105 ~ 105 (122)
T cd02071 105 E 105 (122)
T ss_pred E
Confidence 3
No 173
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.54 E-value=3.5e+02 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhc--CCeEEEEEEe
Q 045356 187 NPEEVAHLLGAAQAS--GLAVIGVAFH 211 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~--~l~l~Glh~H 211 (419)
.|+++.++++.+++. ++. .++|+|
T Consensus 174 ~P~~v~~l~~~l~~~~~~~~-i~~H~H 199 (280)
T cd07945 174 SPFETYTYISDMVKRYPNLH-FDFHAH 199 (280)
T ss_pred CHHHHHHHHHHHHhhCCCCe-EEEEeC
Confidence 566666666665532 343 356666
No 174
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.51 E-value=2.2e+02 Score=25.53 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHCCCcEE--Ee-------cCHHHHHHHHhHCCC--CeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 045356 128 KPVSHIKYAASVGVNLT--TF-------DSIQELDKIRKWHPK--CELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLG 196 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i--~v-------dS~~el~~i~~~~~~--~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~ 196 (419)
++.++++.|++.|+..+ .. =|.+++..|.+..+. ..+++=+|. +++++.+++.
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~----------------~~~~i~~ia~ 70 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE----------------DLEEILEIAE 70 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC----------------CHHHHHHHHH
Confidence 45666666666665543 11 135566677766655 555554443 2344444433
Q ss_pred HHHhcCCeEEEEEEee
Q 045356 197 AAQASGLAVIGVAFHI 212 (419)
Q Consensus 197 ~~~~~~l~l~Glh~H~ 212 (419)
. +.+.|+|.|-
T Consensus 71 ---~--~~~d~Vqlhg 81 (203)
T cd00405 71 ---E--LGLDVVQLHG 81 (203)
T ss_pred ---h--cCCCEEEECC
Confidence 2 3567788883
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.94 E-value=3.9e+02 Score=26.32 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=6.8
Q ss_pred CCCCCCHHHHHHHH
Q 045356 182 SKFGANPEEVAHLL 195 (419)
Q Consensus 182 sRfGi~~ee~~~~l 195 (419)
+-+|+........+
T Consensus 198 nnlGla~ANslaAi 211 (337)
T PRK08195 198 NNLGLGVANSLAAV 211 (337)
T ss_pred CCcchHHHHHHHHH
Confidence 45565554444333
No 176
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=38.52 E-value=3.2e+02 Score=25.20 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=39.5
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEecCH----HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTFDSI----QELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLL 195 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~----~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l 195 (419)
++.+.|+..+.++++.+++.|+..+++.|. +.++.+.+..+..++.+-++.... ... ...-+.++.++.+.+
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~---~~~-~~~~~~~~~~~~~~~ 155 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGG---QLL-KPTDFIGPEELLRRL 155 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCC---eec-cccCcCCHHHHHHHH
Confidence 466667777777777777776543333332 445666665555566666665321 011 123455666554444
Q ss_pred H
Q 045356 196 G 196 (419)
Q Consensus 196 ~ 196 (419)
+
T Consensus 156 ~ 156 (233)
T cd04723 156 A 156 (233)
T ss_pred H
Confidence 3
No 177
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.21 E-value=4.5e+02 Score=26.75 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=34.9
Q ss_pred EEEEEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHHH
Q 045356 164 LLIRIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAIA 227 (419)
Q Consensus 164 v~lRv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~~ 227 (419)
+.-.++++..+|+. ....+| |.+.++..++++.+++. ++.+.. ++-+|--..+.+.+.+.++
T Consensus 239 ~~~~l~iglQSgsd~vLk~M~R-~~t~~~~~~~v~~lr~~~p~i~i~~-d~IvGfPgETeedf~~Tl~ 304 (420)
T PRK14339 239 ICKSIHMPLQSGSSEILKAMKR-GYTKEWFLNRAEKLRALVPEVSIST-DIIVGFPGESDKDFEDTMD 304 (420)
T ss_pred ccCceEeCCccCCHHHHHhccC-CCCHHHHHHHHHHHHHHCCCCEEEE-EEEEECCCCCHHHHHHHHH
Confidence 33456666554421 122345 66788888888888763 665443 4455654555565554443
No 178
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=38.18 E-value=2.3e+02 Score=29.09 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=40.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLP-MVHPYYAVKCNP---EPAILETLAALGS---NFDCASPSE 107 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan~---~~~v~~~l~~~G~---g~~VaS~~E 107 (419)
+||.+ ++.+.+.+-++.+++.++ ....-..+-+|+ ..+.++.+.+.|+ .++|-|.++
T Consensus 123 GTPs~-L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d 186 (449)
T PRK09058 123 GTPTA-LSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNT 186 (449)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCH
Confidence 35543 678899999999998876 212235577776 5788999999985 567777554
No 179
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=37.83 E-value=2.2e+02 Score=27.19 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=51.4
Q ss_pred ccCCcHHHHHHHHHcCCcEEE-------cCHHHHHHHHH----CCCCCCcEEEcCCCCCHHHHHHHHHCCCc---EEEec
Q 045356 82 KCNPEPAILETLAALGSNFDC-------ASPSEIQAVLA----LSVSPDRIIYANACKPVSHIKYAASVGVN---LTTFD 147 (419)
Q Consensus 82 Kan~~~~v~~~l~~~G~g~~V-------aS~~E~~~a~~----~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~---~i~vd 147 (419)
-.-+++.+++++...|..|-+ -+..++..... .|..+ ++=. |..++..++++++.|+. ...|+
T Consensus 24 ~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~--lVRv-p~~~~~~i~r~LD~GA~GIivP~V~ 100 (267)
T PRK10128 24 LSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQP--VIRP-VEGSKPLIKQVLDIGAQTLLIPMVD 100 (267)
T ss_pred ecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCe--EEEC-CCCCHHHHHHHhCCCCCeeEecCcC
Confidence 344678999999998864332 34555553332 35532 4433 45678999999998764 23899
Q ss_pred CHHHHHHHHhHCC
Q 045356 148 SIQELDKIRKWHP 160 (419)
Q Consensus 148 S~~el~~i~~~~~ 160 (419)
|.+|++++.+..+
T Consensus 101 saeeA~~~V~a~r 113 (267)
T PRK10128 101 TAEQARQVVSATR 113 (267)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999988754
No 180
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.55 E-value=2.5e+02 Score=26.46 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=53.7
Q ss_pred cCCcHHHHHHHHHcCCcEEE-------cCHHHHHHHH---H-CCCCCCcEEEcCCCCCHHHHHHHHHCCCc---EEEecC
Q 045356 83 CNPEPAILETLAALGSNFDC-------ASPSEIQAVL---A-LSVSPDRIIYANACKPVSHIKYAASVGVN---LTTFDS 148 (419)
Q Consensus 83 an~~~~v~~~l~~~G~g~~V-------aS~~E~~~a~---~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~---~i~vdS 148 (419)
.-+++.+++.+...|..|-+ .+.+++.... + .|.. .++=. |..++..++++++.|.. ...|+|
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~--~lVRv-p~~~~~~i~r~LD~Ga~giivP~v~t 102 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASA--PVVRV-PTNEPVIIKRLLDIGFYNFLIPFVET 102 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCC--cEEEC-CCCCHHHHHHHhCCCCCeeeecCcCC
Confidence 45678999999998864332 3444554333 2 3553 24433 55678999999998764 238899
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 045356 149 IQELDKIRKWHPKCELLIR 167 (419)
Q Consensus 149 ~~el~~i~~~~~~~~v~lR 167 (419)
.+|++.+.+..+-.+.+.|
T Consensus 103 ae~a~~~v~a~kypP~G~R 121 (256)
T PRK10558 103 AEEARRAVASTRYPPEGIR 121 (256)
T ss_pred HHHHHHHHHHcCCCCCCcC
Confidence 9999999887544333333
No 181
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=37.39 E-value=3.4e+02 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHhhcCC-CCCcEEE-E---eHHHHHHHHHHHHHh
Q 045356 32 DGGLLEFMESIILKRQE-LDEPFYV-L---DLGVVISLYHQLISN 71 (419)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-~~tP~~v-~---d~~~l~~ni~~~~~~ 71 (419)
+.++..+++++....+. .+.|+.+ + +.+.+.+.++.+.+.
T Consensus 79 ~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~ 123 (289)
T cd02810 79 NLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERA 123 (289)
T ss_pred CcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 34455555555433222 3556554 2 555555555555544
No 182
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.42 E-value=3.5e+02 Score=24.96 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeeC
Q 045356 184 FGANPEEVAHLLGAAQASGLAVIGVAFHIG 213 (419)
Q Consensus 184 fGi~~ee~~~~l~~~~~~~l~l~Glh~H~g 213 (419)
+..+.+++.++++.+..++ .|+.+-++
T Consensus 153 ~l~t~~~~~~li~~v~~~~---~~i~~D~~ 179 (254)
T TIGR03234 153 FLTTTEQALAVIDDVGREN---LKLQYDLY 179 (254)
T ss_pred hhcCHHHHHHHHHHhCCCC---EeEeeehh
Confidence 3446777777776654333 44444443
No 183
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=36.40 E-value=3.3e+02 Score=24.69 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHHC-CC----------CCCcEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 87 PAILETLAALGS-NFDCASPSEIQAVLAL-SV----------SPDRIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~~E~~~a~~~-G~----------~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
..+++.+.+.|+ .+.+.+.+.++.+++. .+ +...+ +.|+ +.++++.+++.|+..+.++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~-~ig~--~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEV-YITP--TIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCc-eeCC--CHHHHHHHHHcCCCEEEEe
Confidence 456777778888 7888999888888765 21 11111 1233 3468899999999866664
No 184
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=36.14 E-value=2.4e+02 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=10.8
Q ss_pred EEEcCCCCCHHHHHHHHHCCCc
Q 045356 121 IIYANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gi~ 142 (419)
++..|.+.++++...|++.|+.
T Consensus 178 VI~egGI~tpeda~~AmelGAd 199 (248)
T cd04728 178 VIVDAGIGTPSDAAQAMELGAD 199 (248)
T ss_pred EEEeCCCCCHHHHHHHHHcCCC
Confidence 4444444455555555555543
No 185
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=36.07 E-value=4.7e+02 Score=26.37 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=44.1
Q ss_pred CHHHHHHHHhHCCCCeEEEEEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHH
Q 045356 148 SIQELDKIRKWHPKCELLIRIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAA 225 (419)
Q Consensus 148 S~~el~~i~~~~~~~~v~lRv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~ 225 (419)
+.+.++.+.+.+-+ ||+++..+... ...-+| +.+.+++.+.++.+++.++.-..+.+-+|-...+.+.+.+.
T Consensus 114 t~e~l~~l~~~Gvn-----rislGvQS~~d~~L~~l~R-~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~t 187 (400)
T PRK07379 114 DLEQLQGYRSLGVN-----RVSLGVQAFQDELLALCGR-SHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQAS 187 (400)
T ss_pred CHHHHHHHHHCCCC-----EEEEEcccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHH
Confidence 34556666554321 55554432110 111134 46788888999888888887667777777655566666554
Q ss_pred HHH
Q 045356 226 IAE 228 (419)
Q Consensus 226 ~~~ 228 (419)
++.
T Consensus 188 l~~ 190 (400)
T PRK07379 188 LEA 190 (400)
T ss_pred HHH
Confidence 443
No 186
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.83 E-value=71 Score=30.60 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHHHHhC--CCCceeeeeccCCcH-HHHHHHHHc-CC-----cEE------------EcCHHHHHHHHHCCCCC-C
Q 045356 62 ISLYHQLISNL--PMVHPYYAVKCNPEP-AILETLAAL-GS-----NFD------------CASPSEIQAVLALSVSP-D 119 (419)
Q Consensus 62 ~~ni~~~~~~~--~~~~i~~avKan~~~-~v~~~l~~~-G~-----g~~------------VaS~~E~~~a~~~G~~~-~ 119 (419)
....+++.+.+ ++++++-.=|+.|-. .+.+..... |. |.. ..+..|+....+...+. .
T Consensus 104 AT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~ 183 (273)
T PRK05848 104 ATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTA 183 (273)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCc
Confidence 33444455444 357777777887742 233333322 21 111 23566655555555543 3
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEecC--HHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTFDS--IQELDKIRKWHP--KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLL 195 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~--~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l 195 (419)
.|.. -..+-++...|++.|+..+.+|+ +++++++.+..+ ..++.+-.. -|++++++.+.+
T Consensus 184 ~I~V--Ev~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAs--------------GgIt~~ni~~ya 247 (273)
T PRK05848 184 KIEI--ECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEAS--------------GNITLENINAYA 247 (273)
T ss_pred eEEE--EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEE--------------CCCCHHHHHHHH
Confidence 3443 23578999999999998878886 566776666422 123333222 267888777664
Q ss_pred H
Q 045356 196 G 196 (419)
Q Consensus 196 ~ 196 (419)
+
T Consensus 248 ~ 248 (273)
T PRK05848 248 K 248 (273)
T ss_pred H
Confidence 3
No 187
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.74 E-value=2.6e+02 Score=25.90 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCCceeeeeccCC---cHHHHHHHHHcCC-cEEEcC----HHHHHHHHH----CCCCCCcEEE-cCCCCCHHHHHHHHH
Q 045356 72 LPMVHPYYAVKCNP---EPAILETLAALGS-NFDCAS----PSEIQAVLA----LSVSPDRIIY-ANACKPVSHIKYAAS 138 (419)
Q Consensus 72 ~~~~~i~~avKan~---~~~v~~~l~~~G~-g~~VaS----~~E~~~a~~----~G~~~~~Ii~-~gp~k~~~~l~~a~~ 138 (419)
+.+.++.+++.... ..++++.+.+.|+ -+|+.- ..|....+. ..+ | ++++ .|...+.++.+.|++
T Consensus 12 l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~-p-~~~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 12 MKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKEL-P-GMILGVGSIVDAATAALYIQ 89 (222)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhC-C-CeEEeeEeCcCHHHHHHHHH
Confidence 33457888888777 4678889999998 788764 444333332 222 2 4555 477789999999999
Q ss_pred CCCcEE
Q 045356 139 VGVNLT 144 (419)
Q Consensus 139 ~gi~~i 144 (419)
.|..++
T Consensus 90 aGA~Fi 95 (222)
T PRK07114 90 LGANFI 95 (222)
T ss_pred cCCCEE
Confidence 999853
No 188
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.62 E-value=64 Score=31.17 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCCceeeeeccCCcHH-HHHHHHHcC-Cc---EE--------------EcCHHHHHHHHHCCCC-CCcEEEcCCCCCHHH
Q 045356 73 PMVHPYYAVKCNPEPA-ILETLAALG-SN---FD--------------CASPSEIQAVLALSVS-PDRIIYANACKPVSH 132 (419)
Q Consensus 73 ~~~~i~~avKan~~~~-v~~~l~~~G-~g---~~--------------VaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~ 132 (419)
|++++.--=|+-|-.. +.+.....| .. +. +.+..++....+...+ ...|.+=- .+.++
T Consensus 132 ~~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv--~tlee 209 (290)
T PRK06559 132 DRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEV--ESLAA 209 (290)
T ss_pred CCeEEEeecCCCCcchHHHHHHHHhcCCcccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEEC--CCHHH
Confidence 4577777778887432 333333322 11 11 2256565554444333 24566643 57789
Q ss_pred HHHHHHCCCcEEEecC--HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC--CeEEEE
Q 045356 133 IKYAASVGVNLTTFDS--IQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASG--LAVIGV 208 (419)
Q Consensus 133 l~~a~~~gi~~i~vdS--~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~--l~l~Gl 208 (419)
+..|++.|+..+.+|+ ++++.++.+..+. ++.+..+ -|++++.+.+.++ .| +-..|-
T Consensus 210 a~~a~~agaDiImLDnmspe~l~~av~~~~~-~~~leaS--------------GGI~~~ni~~yA~----tGVD~Is~ga 270 (290)
T PRK06559 210 AEEAAAAGADIIMLDNMSLEQIEQAITLIAG-RSRIECS--------------GNIDMTTISRFRG----LAIDYVSSGS 270 (290)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHhcC-ceEEEEE--------------CCCCHHHHHHHHh----cCCCEEEeCc
Confidence 9999999988888886 5677777665432 3444333 2677777666543 33 344555
Q ss_pred EEe
Q 045356 209 AFH 211 (419)
Q Consensus 209 h~H 211 (419)
-+|
T Consensus 271 lth 273 (290)
T PRK06559 271 LTH 273 (290)
T ss_pred ccc
Confidence 556
No 189
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=35.57 E-value=2.9e+02 Score=25.97 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred ccCCcHHHHHHHHHcCCcEEE-------cCHHHHHHHH---H-CCCCCCcEEEcCCCCCHHHHHHHHHCCCc---EEEec
Q 045356 82 KCNPEPAILETLAALGSNFDC-------ASPSEIQAVL---A-LSVSPDRIIYANACKPVSHIKYAASVGVN---LTTFD 147 (419)
Q Consensus 82 Kan~~~~v~~~l~~~G~g~~V-------aS~~E~~~a~---~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~---~i~vd 147 (419)
-.-+++.+++++...|..|-+ .+..++..+. + .|.+ .++=. |..++..++++++.|+. ...|+
T Consensus 18 ~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~--~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~ 94 (249)
T TIGR03239 18 SALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASA--PVVRP-PWNEPVIIKRLLDIGFYNFLIPFVE 94 (249)
T ss_pred EcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCC--cEEEC-CCCCHHHHHHHhcCCCCEEEecCcC
Confidence 345678999999998863322 3444544444 3 3553 24433 55678999999998865 23889
Q ss_pred CHHHHHHHHhHCCCCeEEEE
Q 045356 148 SIQELDKIRKWHPKCELLIR 167 (419)
Q Consensus 148 S~~el~~i~~~~~~~~v~lR 167 (419)
|.+|++++.+..+-.+.+.|
T Consensus 95 taeea~~~v~a~kypP~G~R 114 (249)
T TIGR03239 95 SAEEAERAVAATRYPPEGIR 114 (249)
T ss_pred CHHHHHHHHHHcCCCCCCcC
Confidence 99999999887543333333
No 190
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=35.19 E-value=4.3e+02 Score=25.73 Aligned_cols=146 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhhcCCC------CCcEEEEeHHHHHHHHHHHHHhCCCCceeeeecc---CC---cHHHHHHHHHcC-
Q 045356 31 KDGGLLEFMESIILKRQEL------DEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKC---NP---EPAILETLAALG- 97 (419)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~------~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKa---n~---~~~v~~~l~~~G- 97 (419)
+.+.+.++++.+..+..-. |.|+.. +.+.|.+-++++++.-.-.++....++ |+ ..++++.|.+.|
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~-~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVL-SPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccC-CHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Q ss_pred ---CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcE---EEe-----cCHHHHHHHHhHCCCCeEE-
Q 045356 98 ---SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNL---TTF-----DSIQELDKIRKWHPKCELL- 165 (419)
Q Consensus 98 ---~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~---i~v-----dS~~el~~i~~~~~~~~v~- 165 (419)
++++.....|+ .....+-++.+.+.|+.+ .++ |+.+++..+.+...+.++.
T Consensus 199 ~v~i~l~~~h~~el-----------------~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 199 TVYVALHANHAREL-----------------TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred cEEEEecCCChhhc-----------------CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCee
Q ss_pred --EEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 045356 166 --IRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA 200 (419)
Q Consensus 166 --lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~ 200 (419)
+-.-..... ...|.++.++..++++.++.
T Consensus 262 yyl~~~~p~~g------~~~f~~~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 262 YYLHHLDLAPG------TAHFRVTIEEGQALVRALRG 292 (321)
T ss_pred EEEEecCCCCC------cccccCcHHHHHHHHHHHHH
No 191
>PF11181 YflT: Heat induced stress protein YflT
Probab=35.07 E-value=77 Score=25.27 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHC-CCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 045356 108 IQAVLALSVSPDRIIYANACKPVSHIKYAASV-GVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGA 186 (419)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~-gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi 186 (419)
++.++..|+..++|.+.. +....+....+. ++..+........+.+..... ...+. ......++|+
T Consensus 16 I~~L~~~Gy~~ddI~Vva--~d~~~~~~l~~~t~~~~~~~~~~~~~d~~~~~f~---------~~~d~--~~~~l~~lGl 82 (103)
T PF11181_consen 16 IEELKAQGYSEDDIYVVA--KDKDRTERLADQTDTNTVGASEESFWDKIKNFFT---------SGGDE--LRSKLESLGL 82 (103)
T ss_pred HHHHHHcCCCcccEEEEE--cCchHHHHHHHhcCCceeccccccHHHHHHHhcc---------CCcHH--HHHHHHHcCC
Confidence 455566799999998876 444555555433 444334444555666655432 11100 0001268999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 045356 187 NPEEVAHLLGAAQASGL 203 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~~l 203 (419)
+.+++...-+.+..-.+
T Consensus 83 ~~~ea~~y~~~l~~Gki 99 (103)
T PF11181_consen 83 SEDEAERYEEELDQGKI 99 (103)
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 99998887777655433
No 192
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.78 E-value=3.3e+02 Score=24.25 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHc--CC--cEE--EcCHH--HHHHHHHCCCCCCcEEEcCCCC---CHHHHHHHHHCCCcEE-EecCH----H
Q 045356 87 PAILETLAAL--GS--NFD--CASPS--EIQAVLALSVSPDRIIYANACK---PVSHIKYAASVGVNLT-TFDSI----Q 150 (419)
Q Consensus 87 ~~v~~~l~~~--G~--g~~--VaS~~--E~~~a~~~G~~~~~Ii~~gp~k---~~~~l~~a~~~gi~~i-~vdS~----~ 150 (419)
..+++.+.+. +. .++ +..++ +++.+.++|. +-|++.+... ..+.++.+-++|+... .+-+. +
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga--d~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~ 117 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA--DIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVK 117 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC--CEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHH
Confidence 6778778765 32 333 44555 7899999996 4455554321 1345566667887542 22232 5
Q ss_pred HHHHHHhHCCCCeEEEEEecCC
Q 045356 151 ELDKIRKWHPKCELLIRIKSPV 172 (419)
Q Consensus 151 el~~i~~~~~~~~v~lRv~~~~ 172 (419)
++..+.+.... .+.++++.
T Consensus 118 ~~~~~~~~g~d---~v~~~pg~ 136 (206)
T TIGR03128 118 RAKELKELGAD---YIGVHTGL 136 (206)
T ss_pred HHHHHHHcCCC---EEEEcCCc
Confidence 55555554332 34666543
No 193
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.63 E-value=76 Score=30.51 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHCCCcEEEecC--HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 045356 128 KPVSHIKYAASVGVNLTTFDS--IQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLL 195 (419)
Q Consensus 128 k~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l 195 (419)
.+-+++..|++.|+..+.+|+ .+++++..+..+. +..+..+ -|++++.+.+.+
T Consensus 201 ~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~~-~~~leaS--------------GgI~~~ni~~yA 255 (281)
T PRK06543 201 DRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVDG-RAIVEAS--------------GNVNLNTVGAIA 255 (281)
T ss_pred CCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhCC-CeEEEEE--------------CCCCHHHHHHHH
Confidence 456777777777777667775 4566665554332 2233333 267777766654
No 194
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.36 E-value=2.6e+02 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=10.7
Q ss_pred EEEcCCCCCHHHHHHHHHCCCc
Q 045356 121 IIYANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gi~ 142 (419)
++..|.+.++++...|++.|+.
T Consensus 178 VIveaGI~tpeda~~AmelGAd 199 (250)
T PRK00208 178 VIVDAGIGTPSDAAQAMELGAD 199 (250)
T ss_pred EEEeCCCCCHHHHHHHHHcCCC
Confidence 4444444455555555555543
No 195
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.34 E-value=1.6e+02 Score=26.89 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCCcEEEEeH--HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcC---HHHHHHHHHCCCCCCcEEE
Q 045356 49 LDEPFYVLDL--GVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCAS---PSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 49 ~~tP~~v~d~--~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS---~~E~~~a~~~G~~~~~Ii~ 123 (419)
.+-+++++.. +.-.+.++++++.+|+ +.--.=+=-+++-++...+.|..|-|+- .+=++.+++.|+ .+
T Consensus 32 ~Gi~~iEit~~t~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i-----~~ 104 (204)
T TIGR01182 32 GGLRVLEVTLRTPVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGI-----PI 104 (204)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC-----cE
Confidence 3445555433 3445556666666653 2222222234555566666666555542 222333333333 22
Q ss_pred cCCCCCHHHHHHHHHCCCc
Q 045356 124 ANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~ 142 (419)
...+.++.|+..|.++|..
T Consensus 105 iPG~~TptEi~~A~~~Ga~ 123 (204)
T TIGR01182 105 IPGVATPSEIMLALELGIT 123 (204)
T ss_pred ECCCCCHHHHHHHHHCCCC
Confidence 2334566666666666654
No 196
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.28 E-value=1.2e+02 Score=26.00 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=41.1
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCC-cEEEcCHHH---------HHHHHHCCCCCCcEE-EcCCCCCHHHHHHHHHCCCc
Q 045356 74 MVHPYYAVKCNPEPAILETLAALGS-NFDCASPSE---------IQAVLALSVSPDRII-YANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 74 ~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS~~E---------~~~a~~~G~~~~~Ii-~~gp~k~~~~l~~a~~~gi~ 142 (419)
++++.|.-=--+-.++++...+... .+.++|.+. .+.+++.|.. +|+ +.|+.++++++....++|+.
T Consensus 40 GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~--~i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 40 GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVE--DILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCc--ceEEeecCccCchhHHHHHHhCcc
Confidence 4555443222223466666666666 666776543 3455667874 444 77777888887777778775
No 197
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.06 E-value=80 Score=30.38 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCceeeeeccCCcH-HHHHHHHHcC------CcEE------------EcCHHHHHHHHHCCCC-CCcEEEcCCCCCHHHH
Q 045356 74 MVHPYYAVKCNPEP-AILETLAALG------SNFD------------CASPSEIQAVLALSVS-PDRIIYANACKPVSHI 133 (419)
Q Consensus 74 ~~~i~~avKan~~~-~v~~~l~~~G------~g~~------------VaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~l 133 (419)
++++.--=|+.|-. .+.+.....| .|.. ..+..++....+...+ ...|.+- ..+-+++
T Consensus 130 ~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVE--v~tleea 207 (281)
T PRK06106 130 KAKVVCTRKTTPGLRALEKYAVRAGGGMNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVE--VDTLDQL 207 (281)
T ss_pred CeEEEEeCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEE--eCCHHHH
Confidence 56777777888743 3333333322 1221 3356666655554443 2335443 2467899
Q ss_pred HHHHHCCCcEEEecCH--HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 045356 134 KYAASVGVNLTTFDSI--QELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLL 195 (419)
Q Consensus 134 ~~a~~~gi~~i~vdS~--~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l 195 (419)
..|++.|+..+.+|+. +++++..+..+.. ..+..+ -|++++.+.+..
T Consensus 208 ~ea~~~gaDiI~LDn~s~e~l~~av~~~~~~-~~leaS--------------GGI~~~ni~~yA 256 (281)
T PRK06106 208 EEALELGVDAVLLDNMTPDTLREAVAIVAGR-AITEAS--------------GRITPETAPAIA 256 (281)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHhCCC-ceEEEE--------------CCCCHHHHHHHH
Confidence 9999999988888886 7787776654322 223222 267877776654
No 198
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=34.05 E-value=4.5e+02 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 88 AILETLAALGS--NFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 88 ~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
++++.+++.|+ -..|.|.+|++.+.++|+ +-|++.|
T Consensus 100 ~~i~~lk~~g~~v~~~v~s~~~a~~a~~~Ga--D~Ivv~g 137 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVASVALAKRMEKAGA--DAVIAEG 137 (307)
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHHHHHHcCC--CEEEEEC
Confidence 48888998886 568999999999999997 4566644
No 199
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=34.02 E-value=4.2e+02 Score=29.05 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=41.9
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCC---------------------------CcEEEc-CCCCCHHHHHH
Q 045356 86 EPAILETLAALGS--NFDCASPSEIQAVLALSVSP---------------------------DRIIYA-NACKPVSHIKY 135 (419)
Q Consensus 86 ~~~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~---------------------------~~Ii~~-gp~k~~~~l~~ 135 (419)
...+++...+.|. =++|.+.+|++.++++|.+- +.++++ ++++++++++.
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHH
Confidence 3566666777886 58999999999999986321 123233 55677888888
Q ss_pred HHHCCCcEEEe
Q 045356 136 AASVGVNLTTF 146 (419)
Q Consensus 136 a~~~gi~~i~v 146 (419)
+.+.|++-+-|
T Consensus 229 l~~~G~davLI 239 (695)
T PRK13802 229 YARAGADAVLV 239 (695)
T ss_pred HHHCCCCEEEE
Confidence 87777654333
No 200
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.99 E-value=3.9e+02 Score=25.65 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHh---CC---CCce----eeeeccCCc-----HHHHHHHHHcC----CcEEEcCHHHHH
Q 045356 49 LDEPFYVLDLGVVISLYHQLISN---LP---MVHP----YYAVKCNPE-----PAILETLAALG----SNFDCASPSEIQ 109 (419)
Q Consensus 49 ~~tP~~v~d~~~l~~ni~~~~~~---~~---~~~i----~~avKan~~-----~~v~~~l~~~G----~g~~VaS~~E~~ 109 (419)
.+++..+++...-.=-++.+.++ .. +.|+ ..-+|-|.. ...++.+.+.. +-++|.|.+|+.
T Consensus 117 ~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv~~leea~ 196 (278)
T PRK08385 117 VNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEVESLEDAL 196 (278)
T ss_pred cCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEeCCHHHHH
Confidence 46677777765433333333322 11 1111 235788872 22233333332 589999999999
Q ss_pred HHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 110 AVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
.+.++|. +.|.+-+ .++++++.+++
T Consensus 197 ~a~~aga--DiI~LDn--~~~e~l~~~v~ 221 (278)
T PRK08385 197 KAAKAGA--DIIMLDN--MTPEEIREVIE 221 (278)
T ss_pred HHHHcCc--CEEEECC--CCHHHHHHHHH
Confidence 9999997 4555654 47889988865
No 201
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.98 E-value=2.5e+02 Score=28.62 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCC---cHHHHHHHHHcCC---cEEEcCHH
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLP--MVHPYYAVKCNP---EPAILETLAALGS---NFDCASPS 106 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~--~~~i~~avKan~---~~~v~~~l~~~G~---g~~VaS~~ 106 (419)
|||.+ ++.+.|++-+..+++.++ ....-..+=+|+ ...-++.+.+.|+ .+.|.|.+
T Consensus 96 GTPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~ 159 (416)
T COG0635 96 GTPSL-LSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFN 159 (416)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCC
Confidence 56653 678899999999998883 322456688898 4778888999985 67776654
No 202
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.89 E-value=4.4e+02 Score=25.42 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=29.1
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
++++|.|.+|+..+.++|. + ++..++ .++++++.+++
T Consensus 199 I~VEv~tleea~eA~~~Ga--D-~I~LDn-~~~e~l~~av~ 235 (288)
T PRK07428 199 IEVETETLEQVQEALEYGA--D-IIMLDN-MPVDLMQQAVQ 235 (288)
T ss_pred EEEECCCHHHHHHHHHcCC--C-EEEECC-CCHHHHHHHHH
Confidence 4889999999999999986 3 554454 57799988875
No 203
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=33.83 E-value=3.7e+02 Score=26.64 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=30.2
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-cEEEcC
Q 045356 57 DLGVVISLYHQLISNLPMVHPYYAVKCN---PEPAILETLAALGS-NFDCAS 104 (419)
Q Consensus 57 d~~~l~~ni~~~~~~~~~~~i~~avKan---~~~~v~~~l~~~G~-g~~VaS 104 (419)
|.+.+.++++.+++.++ +- ..+|-. -....++.+.+.|+ +++|+.
T Consensus 170 ~f~~~le~i~~i~~~~~-vP--VivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 170 DFRGWLDNIAEIVSALP-VP--VIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred cHHHHHHHHHHHHHhhC-CC--EEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 44556688888887652 11 336655 35788888989988 777755
No 204
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.83 E-value=1.6e+02 Score=29.07 Aligned_cols=143 Identities=12% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCcceeeecCCCCHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHH-HhCCCCc--eeeeeccCCcHHHHHHHHHcCC
Q 045356 22 RGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLI-SNLPMVH--PYYAVKCNPEPAILETLAALGS 98 (419)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~-~~~~~~~--i~~avKan~~~~v~~~l~~~G~ 98 (419)
.|+-+.+.++.-.+..++++.+.-..+++|=.+-+-.|+..+-++++- +++++++ +.-+---.++.-|.+.+.+.|.
T Consensus 59 q~eahr~leg~~~id~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~ 138 (431)
T COG4408 59 QGEAHRQLEGSVTIDCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGR 138 (431)
T ss_pred ccHHHHhhcCceehhHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCC
Confidence 344466788888888888888766567888888888888888877754 3355443 2222223345567888889999
Q ss_pred cEEEcCHHHHHHH------------HHCCCCCCcEEEcC---CCCCHHHHHHHH-HCCCcEEEecCHHHHHHHHhHCCCC
Q 045356 99 NFDCASPSEIQAV------------LALSVSPDRIIYAN---ACKPVSHIKYAA-SVGVNLTTFDSIQELDKIRKWHPKC 162 (419)
Q Consensus 99 g~~VaS~~E~~~a------------~~~G~~~~~Ii~~g---p~k~~~~l~~a~-~~gi~~i~vdS~~el~~i~~~~~~~ 162 (419)
.++|-|..-.... +.-+++ ++|.+.+ ..+..+.+...+ +.||.+..++|..+++. .
T Consensus 139 daeViS~SsY~~dTk~id~~~p~~alTkavK-kriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEt-------r 210 (431)
T COG4408 139 DAEVISLSSYYADTKYIDAEQPNRALTKAVK-KRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAET-------R 210 (431)
T ss_pred CceEEEeehhcccceeecccCcchHHHHHHh-HheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhh-------c
Confidence 9999887654322 222343 3555532 233445554443 57887778888876654 3
Q ss_pred eEEEEEecCC
Q 045356 163 ELLIRIKSPV 172 (419)
Q Consensus 163 ~v~lRv~~~~ 172 (419)
++.+=||++.
T Consensus 211 nit~YVHpPl 220 (431)
T COG4408 211 NITLYVHPPL 220 (431)
T ss_pred ccceeecCcc
Confidence 4666777753
No 205
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=33.77 E-value=4.8e+02 Score=25.84 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCcEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-cEEEc------------------C
Q 045356 50 DEPFYVLDLG-----VVISLYHQLISNLPMVHPYYAVKCN-PEPAILETLAALGS-NFDCA------------------S 104 (419)
Q Consensus 50 ~tP~~v~d~~-----~l~~ni~~~~~~~~~~~i~~avKan-~~~~v~~~l~~~G~-g~~Va------------------S 104 (419)
+--++++|.. .+.+-++.+++.+|+. ..+|-| ..++-++.|.+.|+ ++-|. .
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~---~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEH---TIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCC---eEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCH
Confidence 3457788874 5777888999988863 567886 47888888989887 55544 1
Q ss_pred HHHHHHHHH-CCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecC
Q 045356 105 PSEIQAVLA-LSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 105 ~~E~~~a~~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS 148 (419)
+.-+..+.+ ++-..-.|+.-|.++..-++-.|+..|...+.+.+
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~ 242 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGG 242 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECH
Confidence 111111111 12112358888999999999999999988777773
No 206
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.76 E-value=3.6e+02 Score=26.42 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=54.4
Q ss_pred ecCHHHHHHHHhHCCCCe-EEEEEecCCCCCCCCCCC--CCCCCCHH-HH----HHHHHHHHhcCCeEEEEEEeeCCCC-
Q 045356 146 FDSIQELDKIRKWHPKCE-LLIRIKSPVDGGARYPLD--SKFGANPE-EV----AHLLGAAQASGLAVIGVAFHIGSEA- 216 (419)
Q Consensus 146 vdS~~el~~i~~~~~~~~-v~lRv~~~~~~g~~~~~~--sRfGi~~e-e~----~~~l~~~~~~~l~l~Glh~H~gs~~- 216 (419)
..|+..+.++.+.+.... -..|++.+. ++.. ..+|.... .+ .++-+.+++.++++ .+|.+..+
T Consensus 48 ~~Nl~~l~~~L~~n~~~~I~f~RisS~l-----~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRL---S~Hp~qfi~ 119 (312)
T TIGR00629 48 KANLRDTMKTLHWNIGHGIPFYRFSSSI-----FPFASHPDVGYDLVTFAQKELREIGELAKTHQHRL---TFHPGQFTQ 119 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCccc-----cCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEE---EECCCcccc
Confidence 445555555555432212 246777653 1222 24455443 33 33334445567776 58876642
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHcCCC------cceEEEeCCCCCC
Q 045356 217 ---TNLDAFHAAIAEAKTVFETAARLGMT------KMRVLDIGGGFAC 255 (419)
Q Consensus 217 ---~~~~~~~~~~~~~~~l~~~l~~~g~~------~~~~ldiGGG~~~ 255 (419)
.+++.....++.+..-.+.+...|.. ..-+|++||.++.
T Consensus 120 LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gd 167 (312)
T TIGR00629 120 FTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGN 167 (312)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCC
Confidence 45666777777666555555555521 2335788988853
No 207
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=33.67 E-value=3.4e+02 Score=25.28 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=49.7
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHcCC-cEEEcC---------HHHHHHHHHCCCC
Q 045356 54 YVLDLGVVISLYHQLISNLPMVHPYYAVKCNP------EPAILETLAALGS-NFDCAS---------PSEIQAVLALSVS 117 (419)
Q Consensus 54 ~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~------~~~v~~~l~~~G~-g~~VaS---------~~E~~~a~~~G~~ 117 (419)
+.-|++.+.+-++.+++. +.-+. +|--. ...+++.+.+.|+ ++.|.. .+-+..+++. ++
T Consensus 116 Ll~dp~~l~~iv~av~~~--~~PVs--vKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-~~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMKEL--NKPIF--VKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE-FN 190 (231)
T ss_pred hcCCHHHHHHHHHHHHcC--CCcEE--EEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-cC
Confidence 456888888888888743 22222 33222 3578888889987 665532 1122233322 11
Q ss_pred CCcEEEcCCCCCHHHHHHHHHCCCcEEEe
Q 045356 118 PDRIIYANACKPVSHIKYAASVGVNLTTF 146 (419)
Q Consensus 118 ~~~Ii~~gp~k~~~~l~~a~~~gi~~i~v 146 (419)
.-.|+-+|...+.++..++++.|+..+.+
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 12356666677777777777666654433
No 208
>PRK09389 (R)-citramalate synthase; Provisional
Probab=33.53 E-value=5.8e+02 Score=26.64 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEe
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFH 211 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H 211 (419)
..|+++.++++.+++ .++ ..|+|+|
T Consensus 169 ~~P~~~~~lv~~l~~~~~v-~l~~H~H 194 (488)
T PRK09389 169 LTPEKTYELFKRLSELVKG-PVSIHCH 194 (488)
T ss_pred cCHHHHHHHHHHHHhhcCC-eEEEEec
Confidence 478888888888765 354 4589998
No 209
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.52 E-value=1.3e+02 Score=23.91 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCceeeeeccCCcHHHHHHH-HHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCC-CHHHHHHHHHCCCc
Q 045356 65 YHQLISNLPMVHPYYAVKCNPEPAILETL-AALGSNFDCASPSEIQAVLALSVSPDRIIYANACK-PVSHIKYAASVGVN 142 (419)
Q Consensus 65 i~~~~~~~~~~~i~~avKan~~~~v~~~l-~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k-~~~~l~~a~~~gi~ 142 (419)
+..+++..++.++... ++.++.-.+.+ .+.|+. ...|.+|+...- .+ +-+++..|.. -.+.+..+++.|..
T Consensus 16 ~~~~~~~~~~~~v~~v--~d~~~~~~~~~~~~~~~~-~~~~~~~ll~~~--~~--D~V~I~tp~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAV--CDPDPERAEAFAEKYGIP-VYTDLEELLADE--DV--DAVIIATPPSSHAEIAKKALEAGKH 88 (120)
T ss_dssp HHHHHHTTTTEEEEEE--ECSSHHHHHHHHHHTTSE-EESSHHHHHHHT--TE--SEEEEESSGGGHHHHHHHHHHTTSE
T ss_pred HHHHHhcCCCcEEEEE--EeCCHHHHHHHHHHhccc-chhHHHHHHHhh--cC--CEEEEecCCcchHHHHHHHHHcCCE
Confidence 3455555466666655 34444444443 456777 667777665322 33 4444444433 35566777888875
Q ss_pred EEEe-----cCHHHHHHHHhHC
Q 045356 143 LTTF-----DSIQELDKIRKWH 159 (419)
Q Consensus 143 ~i~v-----dS~~el~~i~~~~ 159 (419)
+ .+ .+.++++++.+.+
T Consensus 89 v-~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 89 V-LVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp E-EEESSSSSSHHHHHHHHHHH
T ss_pred E-EEEcCCcCCHHHHHHHHHHH
Confidence 3 34 3666766666543
No 210
>PLN02535 glycolate oxidase
Probab=33.27 E-value=3.5e+02 Score=27.11 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=42.9
Q ss_pred eeeccCCcHHHHHHHHHcCC-cEEEc------------CHHHHHHHHHC-CCCCCcEEEcCCCCCHHHHHHHHHCCCcEE
Q 045356 79 YAVKCNPEPAILETLAALGS-NFDCA------------SPSEIQAVLAL-SVSPDRIIYANACKPVSHIKYAASVGVNLT 144 (419)
Q Consensus 79 ~avKan~~~~v~~~l~~~G~-g~~Va------------S~~E~~~a~~~-G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i 144 (419)
..+|---++.-++.+.+.|+ ++.|+ +..-+..++++ +-. -.|+..|.+.+..++-.|+..|...+
T Consensus 226 vivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~-ipVi~dGGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 226 ILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGR-VPVLLDGGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcC-CCEEeeCCCCCHHHHHHHHHcCCCEE
Confidence 45775566666777778887 66664 23444444332 211 34777777778888888888887655
Q ss_pred EecC
Q 045356 145 TFDS 148 (419)
Q Consensus 145 ~vdS 148 (419)
.+.+
T Consensus 305 ~vGr 308 (364)
T PLN02535 305 LVGR 308 (364)
T ss_pred EECH
Confidence 5544
No 211
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.23 E-value=3e+02 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=12.3
Q ss_pred HHHHHHCCCcEE-EecCHHHHHHHHhH
Q 045356 133 IKYAASVGVNLT-TFDSIQELDKIRKW 158 (419)
Q Consensus 133 l~~a~~~gi~~i-~vdS~~el~~i~~~ 158 (419)
++.+-+.|+.++ .+-|..++.+..+.
T Consensus 96 ~~~lk~~Gi~v~~~v~s~~~A~~a~~~ 122 (320)
T cd04743 96 ARALEAIGISTYLHVPSPGLLKQFLEN 122 (320)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 444444554432 45555555554443
No 212
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.22 E-value=76 Score=30.70 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=49.3
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecC--HHHHHHHHhHCCCCeEEEEEecCCCCCCCCC
Q 045356 102 CASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS--IQELDKIRKWHPKCELLIRIKSPVDGGARYP 179 (419)
Q Consensus 102 VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~ 179 (419)
+.+..|+....+.-.+...|.+= ..+-+++..|++.|+..+.+|+ .+++++..+..+. ++.+..+
T Consensus 189 ~G~i~~av~~~r~~~~~~kIeVE--vetleea~eA~~aGaDiImLDnmspe~l~~av~~~~~-~~~lEaS---------- 255 (294)
T PRK06978 189 AGGVGAALDAAFALNAGVPVQIE--VETLAQLETALAHGAQSVLLDNFTLDMMREAVRVTAG-RAVLEVS---------- 255 (294)
T ss_pred hCCHHHHHHHHHHhCCCCcEEEE--cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcC-CeEEEEE----------
Confidence 34666655444432222345543 2467888888888888777776 4566666554332 3333333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC--eEEEEEEe
Q 045356 180 LDSKFGANPEEVAHLLGAAQASGL--AVIGVAFH 211 (419)
Q Consensus 180 ~~sRfGi~~ee~~~~l~~~~~~~l--~l~Glh~H 211 (419)
-|++++.+.+..+ .|+ -..|--+|
T Consensus 256 ----GGIt~~ni~~yA~----tGVD~IS~galth 281 (294)
T PRK06978 256 ----GGVNFDTVRAFAE----TGVDRISIGALTK 281 (294)
T ss_pred ----CCCCHHHHHHHHh----cCCCEEEeCcccc
Confidence 2677777665543 343 34455555
No 213
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=33.22 E-value=1.4e+02 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=28.4
Q ss_pred EEEcC-CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHh
Q 045356 121 IIYAN-ACKPVSHIKYAASVGVNLTTFDSIQELDKIRK 157 (419)
Q Consensus 121 Ii~~g-p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~ 157 (419)
++++| .+-+.++|+.++++|+.-++||+.-++.....
T Consensus 207 lVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~a 244 (286)
T COG0191 207 LVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAA 244 (286)
T ss_pred EEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHH
Confidence 77764 45678999999999997788888777666544
No 214
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=33.14 E-value=3.1e+02 Score=23.44 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=20.3
Q ss_pred CcEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 119 DRIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 119 ~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
-.|+..|...+++.+..+++.|+..+.+.
T Consensus 171 ~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 171 VPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred CCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 45777777777688888877777655543
No 215
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=32.84 E-value=5.6e+02 Score=26.28 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=57.4
Q ss_pred CcEEEcCCCC---CHHHHHHHHH---C------CCcEEEec------CHHHHHHHHhHCCCCeEEEEEecCCCCCCC--C
Q 045356 119 DRIIYANACK---PVSHIKYAAS---V------GVNLTTFD------SIQELDKIRKWHPKCELLIRIKSPVDGGAR--Y 178 (419)
Q Consensus 119 ~~Ii~~gp~k---~~~~l~~a~~---~------gi~~i~vd------S~~el~~i~~~~~~~~v~lRv~~~~~~g~~--~ 178 (419)
..|.|.|+.. +++++...++ . ++. ++++ +.+.++.+.+.+- -||.++..+... .
T Consensus 104 ~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~e-itie~np~~l~~e~l~~lk~~G~-----~risiGvqS~~~~~l 177 (455)
T TIGR00538 104 SQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAE-ISIEIDPRYITKDVIDALRDEGF-----NRLSFGVQDFNKEVQ 177 (455)
T ss_pred EEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCe-EEEEeccCcCCHHHHHHHHHcCC-----CEEEEcCCCCCHHHH
Confidence 5677766533 3566655542 1 222 3343 4566777766642 255655443210 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 045356 179 PLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAE 228 (419)
Q Consensus 179 ~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~ 228 (419)
+.-+| +.+.+++.+.++.+++.++.-..+.+.+|-...+.+.+.+.++.
T Consensus 178 ~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~ 226 (455)
T TIGR00538 178 QAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEK 226 (455)
T ss_pred HHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHH
Confidence 11244 35678888888888888876556666666555566666555443
No 216
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=32.80 E-value=3.8e+02 Score=24.35 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEec
Q 045356 87 PAILETLAALGS-NFDCASP-----------SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd 147 (419)
.++++.+.+.|+ .+-+.+. +-++.+.+. .+ -+++..|...+.++++.+.+.|+.-+.+-
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~-ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TG-IPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cC-CCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 356666666665 4444432 223333333 11 34677777777777777777776544444
No 217
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=1e+02 Score=26.81 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHhcCCeEEEEEEe-eCCCC
Q 045356 162 CELLIRIKSPVDGGARYPLDSKFGANP--EEVAHLLGAAQASGLAVIGVAFH-IGSEA 216 (419)
Q Consensus 162 ~~v~lRv~~~~~~g~~~~~~sRfGi~~--ee~~~~l~~~~~~~l~l~Glh~H-~gs~~ 216 (419)
-+|+|=||+. ||.|+++ +.++.+.+..+..|+.+.|+=|. ++.|.
T Consensus 25 GkVlLIVNtA----------SkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QE 72 (162)
T COG0386 25 GKVLLIVNTA----------SKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQE 72 (162)
T ss_pred CcEEEEEEcc----------cccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCC
Confidence 4688888873 9999998 46777888888889999998776 34443
No 218
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=32.67 E-value=68 Score=27.06 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHc----CCCcceEEEeCCCCCC
Q 045356 224 AAIAEAKTVFETAARL----GMTKMRVLDIGGGFAC 255 (419)
Q Consensus 224 ~~~~~~~~l~~~l~~~----g~~~~~~ldiGGG~~~ 255 (419)
++++++.++++.+.+. . ....++|+|+|.|.
T Consensus 4 ~Ei~~~~~~i~~~~~~~~~~~-~~~~vvD~GsG~Gy 38 (141)
T PF13679_consen 4 HEIERMAELIDSLCDSVGESK-RCITVVDLGSGKGY 38 (141)
T ss_pred HHHHHHHHHHHHHHHHhhccC-CCCEEEEeCCChhH
Confidence 4556666666543322 3 46789999999885
No 219
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.67 E-value=6.2e+02 Score=26.73 Aligned_cols=144 Identities=12% Similarity=0.156 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCCCCcE--EEcCCCC---CHHHHHHHHHC---CCcEEE----e-cCHHHHHHHHhHCCCCeEEEEEecC
Q 045356 105 PSEIQAVLALSVSPDRI--IYANACK---PVSHIKYAASV---GVNLTT----F-DSIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 105 ~~E~~~a~~~G~~~~~I--i~~gp~k---~~~~l~~a~~~---gi~~i~----v-dS~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
..++.++.+.|-+.+.| ++.|+.. +.+.....++. -.+-+. . ++++++..+++.+....+++.|.+.
T Consensus 121 ~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtR 200 (522)
T TIGR01211 121 TARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETR 200 (522)
T ss_pred HHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEc
Confidence 44577778888665544 6665533 34444333321 010000 1 1488899998887666677777653
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHH-----HHHHHHHHHHHHHHcCCCcceE
Q 045356 172 VDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHA-----AIAEAKTVFETAARLGMTKMRV 246 (419)
Q Consensus 172 ~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~~~ 246 (419)
.+ .++.+ .++.+++.|.. .+.+|-+..+.+.... ..+...+.++.+++.| +.+ .
T Consensus 201 PD-----------~i~~e----~L~~L~~~G~~----rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G-~~v-~ 259 (522)
T TIGR01211 201 PD-----------YCREE----HIDRMLKLGAT----RVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAG-LKV-V 259 (522)
T ss_pred CC-----------cCCHH----HHHHHHHcCCC----EEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC-CeE-E
Confidence 32 12333 34444555553 3455666555554432 2445556677778888 553 3
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHH
Q 045356 247 LDIGGGFACNPGFHEAASIIKDAI 270 (419)
Q Consensus 247 ldiGGG~~~~~~~~~~~~~i~~~l 270 (419)
+|+==|+|. .+.+...+.+...+
T Consensus 260 ~~LM~GLPg-qt~e~~~~t~~~l~ 282 (522)
T TIGR01211 260 YHIMPGLPG-SSFERDLEMFREIF 282 (522)
T ss_pred EEeecCCCC-CCHHHHHHHHHHHH
Confidence 455556665 44555544444433
No 220
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=32.60 E-value=2.1e+02 Score=25.17 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=46.3
Q ss_pred eeeecCC---CCHHHHHHHHHhhcCCCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHH-HcCC-cE
Q 045356 26 VPTITKD---GGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLA-ALGS-NF 100 (419)
Q Consensus 26 ~~~~~~~---~~~~~~~~~~~~~~~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~-~~G~-g~ 100 (419)
++.+.++ +.+.+.++++..-.++++.|+++=|--.+... +.--.++..-+.. ...-++.+. .... |.
T Consensus 29 v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~-------~~~dGvHl~~~~~-~~~~~r~~~~~~~~ig~ 100 (180)
T PF02581_consen 29 VQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALE-------LGADGVHLGQSDL-PPAEARKLLGPDKIIGA 100 (180)
T ss_dssp EEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHH-------CT-SEEEEBTTSS-SHHHHHHHHTTTSEEEE
T ss_pred EEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHh-------cCCCEEEeccccc-chHHhhhhcccceEEEe
Confidence 4445544 34445555554444456677776663333211 2101222222222 233334433 3343 99
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEcCCC
Q 045356 101 DCASPSEIQAVLALSVSPDRIIYANAC 127 (419)
Q Consensus 101 ~VaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (419)
.|-|.+|+..+.+.|. +.++.||.
T Consensus 101 S~h~~~e~~~a~~~g~---dYv~~gpv 124 (180)
T PF02581_consen 101 SCHSLEEAREAEELGA---DYVFLGPV 124 (180)
T ss_dssp EESSHHHHHHHHHCTT---SEEEEETS
T ss_pred ecCcHHHHHHhhhcCC---CEEEECCc
Confidence 9999999999988886 34555665
No 221
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=32.54 E-value=5.7e+02 Score=26.26 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=69.0
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc--HHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCH
Q 045356 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPE--PAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPV 130 (419)
Q Consensus 53 ~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~--~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (419)
+|-=|.+.-.+-+.++... .+.+-..-.|++.+ ..+-+.|.+.|+-+--..++|+..-+. +-+|.-|+.-.-.++.
T Consensus 82 y~A~~aedA~~ii~~iv~~-k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~-~~~PsHIV~PAlH~~r 159 (459)
T COG1139 82 YFAKDAEDAREIIGEIVGE-KNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLA-GEPPSHIVAPALHKNR 159 (459)
T ss_pred EEeCCHHHHHHHHHHHHhh-ccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhc-CCCCcceeccccccCH
Confidence 3334444444444444432 14455555666665 346788889999888888999998777 5567778876667899
Q ss_pred HHHHHHHHCCCcEEEecCHHHHHHHHhH
Q 045356 131 SHIKYAASVGVNLTTFDSIQELDKIRKW 158 (419)
Q Consensus 131 ~~l~~a~~~gi~~i~vdS~~el~~i~~~ 158 (419)
+++..+++.......-|+.+++.+.++.
T Consensus 160 eqIa~if~ekl~~~~~~~~eel~~~aR~ 187 (459)
T COG1139 160 EQIAEIFKEKLGYEGEDTPEELTAAARE 187 (459)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 9999998643221223888888876653
No 222
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.53 E-value=95 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=12.7
Q ss_pred CHHHHHHHHHCCCcEEEecC--HHHHHHHH
Q 045356 129 PVSHIKYAASVGVNLTTFDS--IQELDKIR 156 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS--~~el~~i~ 156 (419)
+.+++..|++.|+..+.+|+ .++++++.
T Consensus 89 ~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v 118 (169)
T PF01729_consen 89 NLEEAEEALEAGADIIMLDNMSPEDLKEAV 118 (169)
T ss_dssp SHHHHHHHHHTT-SEEEEES-CHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEecCcCHHHHHHHH
Confidence 34555555555554444443 33444433
No 223
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.52 E-value=4.5e+02 Score=25.06 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=61.2
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHHhHC-CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEE
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIRKWH-PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGV 208 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~~~~-~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Gl 208 (419)
+.-++.+.+.|++. +.-..-.++.+.... .+..++++++....- .... .. +.+..-++.+-+.+..=.|.
T Consensus 46 e~~v~~v~~~g~da-v~~~~G~~~~~~~~y~~dvplivkl~~~t~l----~~~~---~~-~~~~~~ve~ai~lgadAV~~ 116 (265)
T COG1830 46 ENIVAKVAEAGADA-VAMTPGIARSVHRGYAHDVPLIVKLNGSTSL----SPDP---ND-QVLVATVEDAIRLGADAVGA 116 (265)
T ss_pred HHHHHHHHhcCCCE-EEecHhHHhhcCccccCCcCEEEEecccccc----CCCc---cc-ceeeeeHHHHHhCCCcEEEE
Confidence 45567777888874 566677777766543 478889999875221 1111 11 11111122222457778888
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 045356 209 AFHIGSEATNLDAFHAAIAEAKTVFETAARLGM 241 (419)
Q Consensus 209 h~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~ 241 (419)
|..+||... .++++.+.++++.+.++|+
T Consensus 117 ~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gm 144 (265)
T COG1830 117 TVYVGSETE-----REMIENISQVVEDAHELGM 144 (265)
T ss_pred EEecCCcch-----HHHHHHHHHHHHHHHHcCC
Confidence 888998543 5677788888888999994
No 224
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.43 E-value=5.5e+02 Score=26.69 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCCceeeeec
Q 045356 63 SLYHQLISNLPMVHPYYAVK 82 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avK 82 (419)
+.++.+++.+|++++.--..
T Consensus 73 erlr~~r~~~~nt~lqmLlR 92 (468)
T PRK12581 73 ERLRTLKKGLPNTRLQMLLR 92 (468)
T ss_pred HHHHHHHHhCCCCceeeeec
Confidence 57788888888766543333
No 225
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=31.88 E-value=5e+02 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHCC--CCCCcEEEcCCCCCHHHHHHHHHCCC
Q 045356 106 SEIQAVLALS--VSPDRIIYANACKPVSHIKYAASVGV 141 (419)
Q Consensus 106 ~E~~~a~~~G--~~~~~Ii~~gp~k~~~~l~~a~~~gi 141 (419)
+++..+..+| |.|-=-+|.....++++|+.|.+.|+
T Consensus 58 ~rIl~a~p~~~~F~PLMtlYLtd~~~peel~~a~~~g~ 95 (344)
T COG0418 58 ERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGV 95 (344)
T ss_pred HHHHHhCcCCCCCceeEEEEecCCCCHHHHHHHHhcCc
Confidence 4455555555 44322334455578899999888774
No 226
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.79 E-value=4.7e+02 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=26.3
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
++++|.|.+|+..+.+.|. +.|.+. + .+.++++.+.+
T Consensus 191 Igvsv~tleea~~A~~~ga--DyI~lD-~-~~~e~l~~~~~ 227 (277)
T PRK08072 191 IEVETETEEQVREAVAAGA--DIIMFD-N-RTPDEIREFVK 227 (277)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEEC-C-CCHHHHHHHHH
Confidence 3888888888888888776 445553 3 46778887765
No 227
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=31.77 E-value=1.9e+02 Score=28.80 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=56.0
Q ss_pred cCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCC-----CCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEec
Q 045356 96 LGSNFDCASPSEIQAVLALSVSPDRIIYANAC-----KPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 96 ~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~-----k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~ 170 (419)
=|+.++|...+++..+.+.-..++-|+.+.+. -+...|..|-..|..+-.|.|.-++-++++.+|...+ +=+.+
T Consensus 66 PGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~SL~~ara~GadVriVYSpldAl~iA~~nPdk~V-VF~av 144 (369)
T TIGR00075 66 PGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPGSGGSLLQARAEGADVRIVYSPMDALKIAKENPDRKV-VFFAI 144 (369)
T ss_pred CCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCCCCCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeE-EEEec
Confidence 37899999999999999986556666655221 1345678887788775589999999999999887654 44455
Q ss_pred CCC
Q 045356 171 PVD 173 (419)
Q Consensus 171 ~~~ 173 (419)
+++
T Consensus 145 GFE 147 (369)
T TIGR00075 145 GFE 147 (369)
T ss_pred Cch
Confidence 544
No 228
>PRK09989 hypothetical protein; Provisional
Probab=31.22 E-value=3.6e+02 Score=25.04 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCeEEEEEEeeC-----CC--CCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC-CCCCCCHHHHHH
Q 045356 193 HLLGAAQASGLAVIGVAFHIG-----SE--ATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG-FACNPGFHEAAS 264 (419)
Q Consensus 193 ~~l~~~~~~~l~l~Glh~H~g-----s~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG-~~~~~~~~~~~~ 264 (419)
++.+.+++.|+.+.++++-.+ .. ..++....+..+.+.+.++.+++.| -+ ++.+..| .+...+.++..+
T Consensus 44 ~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg-~~--~v~v~~g~~~~~~~~~~~~~ 120 (258)
T PRK09989 44 QIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALN-CE--QVHVMAGVVPAGEDAERYRA 120 (258)
T ss_pred HHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhC-cC--EEEECccCCCCCCCHHHHHH
Confidence 344455678999998875321 10 0112112233455666777777877 33 3444333 322233333333
Q ss_pred HHHHHHHh---hCCCccCCCccEEEEcC
Q 045356 265 IIKDAIQT---YFPNETAAGHLSVISEP 289 (419)
Q Consensus 265 ~i~~~l~~---~~~~~~~~~~~~li~Ep 289 (419)
.+.+.|++ +..+. + .++.+||
T Consensus 121 ~~~~~l~~l~~~a~~~-g---v~l~lE~ 144 (258)
T PRK09989 121 VFIDNLRYAADRFAPH-G---KRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHHhc-C---CEEEEEe
Confidence 33333322 33322 3 7888887
No 229
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=31.14 E-value=4.3e+02 Score=26.31 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEc------------CHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCA------------SPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~Va------------S~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
+.++.+++..+ . -..+|---++..++.+.+.|+ ++.|+ +..-+..+.++--..-.|+..|.+.+
T Consensus 211 ~~l~~lr~~~~-~--PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISG-L--PVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhC-C--cEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 34455555432 1 244664456667777777777 66662 12222222222111135667777777
Q ss_pred HHHHHHHHHCCCcEEEecC
Q 045356 130 VSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS 148 (419)
..++-.++..|...+.+..
T Consensus 288 g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 288 GEHVFKALASGADAVAVGR 306 (351)
T ss_pred HHHHHHHHHcCCCEEEECH
Confidence 7777777777776545544
No 230
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.91 E-value=4.4e+02 Score=24.47 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=49.7
Q ss_pred cccccccCccccC--CcceeeecC---CCCHHHHHHHHHhhcCCCCCcEEEE-eHHHHHHHHH----HHHHhCCCCceee
Q 045356 10 CTLDLNAPALVVR--GERVPTITK---DGGLLEFMESIILKRQELDEPFYVL-DLGVVISLYH----QLISNLPMVHPYY 79 (419)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~tP~~v~-d~~~l~~ni~----~~~~~~~~~~i~~ 79 (419)
.-+.||.|++++. |..++.-.. +.++.++++++- +....|+++. ...-+..+.. ++++.=.+ -+..
T Consensus 32 d~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr---~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gad-gvii 107 (244)
T PRK13125 32 DILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVR---KDVSVPIILMTYLEDYVDSLDNFLNMARDVGAD-GVLF 107 (244)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHh---ccCCCCEEEEEecchhhhCHHHHHHHHHHcCCC-EEEE
Confidence 3467899998884 666553221 112234555553 2356787532 1111233333 33332111 1222
Q ss_pred e---eccC-CcHHHHHHHHHcCC--cEEEcC---HHHHHHHHHC
Q 045356 80 A---VKCN-PEPAILETLAALGS--NFDCAS---PSEIQAVLAL 114 (419)
Q Consensus 80 a---vKan-~~~~v~~~l~~~G~--g~~VaS---~~E~~~a~~~ 114 (419)
+ +.+. ....+++.+.+.|. ++.+.. .++++.+.+.
T Consensus 108 ~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 108 PDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL 151 (244)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 2 2222 23467777788886 666665 5566666655
No 231
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=30.85 E-value=5.1e+02 Score=25.21 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=45.5
Q ss_pred EEEEeHHHHHHHHHHHHHhCC-CCceeeeeccC-------CcHHHHHHHHHcCC-cEEEcC-------------HHHHHH
Q 045356 53 FYVLDLGVVISLYHQLISNLP-MVHPYYAVKCN-------PEPAILETLAALGS-NFDCAS-------------PSEIQA 110 (419)
Q Consensus 53 ~~v~d~~~l~~ni~~~~~~~~-~~~i~~avKan-------~~~~v~~~l~~~G~-g~~VaS-------------~~E~~~ 110 (419)
.+.-+++.+.+-++++++..+ +.. ..+|.. ....+++.+.+.|+ .+.|.. .+.+..
T Consensus 111 ~Ll~~~~~~~eiv~avr~~~~~~~p--VsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ 188 (312)
T PRK10550 111 TLLKDPELIYQGAKAMREAVPAHLP--VTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGE 188 (312)
T ss_pred HhhcCHHHHHHHHHHHHHhcCCCcc--eEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHH
Confidence 345566777788888887764 222 224422 13567888888887 666632 122233
Q ss_pred HHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 111 VLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+++. ++ -.++.+|.+++.++...+++
T Consensus 189 ik~~-~~-iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 189 IRQR-LT-IPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred HHhh-cC-CcEEEeCCcCCHHHHHHHHh
Confidence 3332 11 23566666666666666653
No 232
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=30.53 E-value=3.8e+02 Score=26.99 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHhCC---CCceeeeeccCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 045356 50 DEPFYVLDLGVVISLYHQLISNLP---MVHPYYAVKCNP---EPAILETLAALGS---NFDCASPSE 107 (419)
Q Consensus 50 ~tP~~v~d~~~l~~ni~~~~~~~~---~~~i~~avKan~---~~~v~~~l~~~G~---g~~VaS~~E 107 (419)
|||. +++.+.+.+-++.+++.++ ..+ ..+=+|+ +.+.++.+.+.|+ .++|-|.++
T Consensus 71 GTPs-~l~~~~l~~ll~~i~~~~~~~~~~e--itiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d 134 (390)
T PRK06582 71 GTPS-LMNPVIVEGIINKISNLAIIDNQTE--ITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKE 134 (390)
T ss_pred Cccc-cCCHHHHHHHHHHHHHhCCCCCCCE--EEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCH
Confidence 4773 4778889988888888653 233 5677788 4788999999995 678888766
No 233
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=30.32 E-value=3.6e+02 Score=27.60 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 182 SKFGANPEEVAHLLGAAQA--SGLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~--~~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
+| +.+.++..+.++.+++ +++.+.+ .+-+|--..+.+.+.+.+
T Consensus 275 ~r-~~~~~~~~~~i~~lr~~~~~i~i~t-~~IvGfPgET~edf~~tl 319 (440)
T PRK14862 275 KR-PASVEKTLERIKKWREICPDLTIRS-TFIVGFPGETEEDFQMLL 319 (440)
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCceecc-cEEEECCCCCHHHHHHHH
Confidence 45 5577788888887765 4666554 444565455566555443
No 234
>PRK09875 putative hydrolase; Provisional
Probab=30.13 E-value=4.1e+02 Score=25.67 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCCCCCcEEEcCC--CCCHHHHHHHHHCCCcEEEecC
Q 045356 105 PSEIQAVLALSVSPDRIIYANA--CKPVSHIKYAASVGVNLTTFDS 148 (419)
Q Consensus 105 ~~E~~~a~~~G~~~~~Ii~~gp--~k~~~~l~~a~~~gi~~i~vdS 148 (419)
.+.++.+.+.|++++++++... ..+.+.++.+++.|+- +-+|+
T Consensus 166 ~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~-l~fD~ 210 (292)
T PRK09875 166 LEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY-VQFDT 210 (292)
T ss_pred HHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCE-EEecc
Confidence 3447888888999999998754 2467888888999974 56654
No 235
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=29.92 E-value=7.2e+02 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHh-cCCeEEEEEEeeC
Q 045356 186 ANPEEVAHLLGAAQA-SGLAVIGVAFHIG 213 (419)
Q Consensus 186 i~~ee~~~~l~~~~~-~~l~l~Glh~H~g 213 (419)
..|.++.++++.+++ .++ -.|+|+|-.
T Consensus 175 ~~P~~v~~lv~~lk~~~~~-pi~~H~Hnt 202 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFGL-PVHLHSHAT 202 (582)
T ss_pred cCHHHHHHHHHHHHHhCCC-ceEEEecCC
Confidence 478899999988875 354 357888843
No 236
>PRK01722 formimidoylglutamase; Provisional
Probab=29.84 E-value=5.2e+02 Score=25.12 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred CCCCcEEEcCCCC---CHHHHHHHHHCCCcEEEecCHHH--HH----HHHhHCC-CCeEEEEEecCCCCCC---CCCCCC
Q 045356 116 VSPDRIIYANACK---PVSHIKYAASVGVNLTTFDSIQE--LD----KIRKWHP-KCELLIRIKSPVDGGA---RYPLDS 182 (419)
Q Consensus 116 ~~~~~Ii~~gp~k---~~~~l~~a~~~gi~~i~vdS~~e--l~----~i~~~~~-~~~v~lRv~~~~~~g~---~~~~~s 182 (419)
+.+.+++..|.-. ++++.+++-+.|+..+..+.+.+ ++ .+.+..+ ...|.|-++++.-... -..+..
T Consensus 182 ~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~ 261 (320)
T PRK01722 182 IRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPA 261 (320)
T ss_pred CCCCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCc
Confidence 3456777776432 45778888888886554444432 11 2222212 3456666666531100 122346
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q 045356 183 KFGANPEEVAHLLGAAQASGLAVIGVAFH 211 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~~l~l~Glh~H 211 (419)
..|++..|+.++++.+.+. -++.|+.+-
T Consensus 262 pgGls~~e~~~il~~l~~~-~~vvg~Div 289 (320)
T PRK01722 262 AGGVPLETLLRAIEPICRS-GKLQAADLV 289 (320)
T ss_pred CCCCCHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 7899999999999887443 356666654
No 237
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=29.30 E-value=4.4e+02 Score=24.02 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHHCCCCCCcEEEcCCCCCHHHHHH-HHHCCCcEEEec
Q 045356 87 PAILETLAALGS-NFDCASP-----------SEIQAVLALSVSPDRIIYANACKPVSHIKY-AASVGVNLTTFD 147 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~-a~~~gi~~i~vd 147 (419)
.++++.+.+.|+ .+.+.+. +.++.+++. .+ -+++..|...+.+++.. +.+.|+.-+.+.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~-~~-ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDA-VS-IPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhh-CC-CCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 456677777776 5555552 223333332 22 35777777777777777 445666544443
No 238
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.03 E-value=4.9e+02 Score=24.39 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCC-cEEEc
Q 045356 87 PAILETLAALGS-NFDCA 103 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~Va 103 (419)
.+.++.+++.|. ++++.
T Consensus 24 ~e~~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMS 41 (283)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 345555555665 55553
No 239
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.90 E-value=1.3e+02 Score=26.72 Aligned_cols=34 Identities=6% Similarity=-0.023 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCH-HHHHHHHhH
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSI-QELDKIRKW 158 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~-~el~~i~~~ 158 (419)
|+..-...++.+.+.+..++.+.+- +.++++.+.
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~ 67 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVK 67 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 4333344455555566555555443 344455444
No 240
>PRK08445 hypothetical protein; Provisional
Probab=28.63 E-value=4.3e+02 Score=26.17 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=46.8
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc------HHHHHHHHHcC--CcEEEcCHHHHHHHHHCCCCCCcEEE
Q 045356 52 PFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPE------PAILETLAALG--SNFDCASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 52 P~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~------~~v~~~l~~~G--~g~~VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
..|.++.+.|.+.+++.++. ...+++.+-.-++. ..+++.+.+.. +.+...|..|.....+.+..
T Consensus 69 ~~y~l~~eeI~~~~~~a~~~-g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~------ 141 (348)
T PRK08445 69 DAYILSFEEIDKKIEELLAI-GGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKI------ 141 (348)
T ss_pred CCeeCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCC------
Confidence 45677889999988887764 22355444444443 56777777765 35555566666654443210
Q ss_pred cCCCCCHHHHHHHHHCCCc
Q 045356 124 ANACKPVSHIKYAASVGVN 142 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~ 142 (419)
..+++++...+.|+.
T Consensus 142 ----~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 142 ----SIKEVLERLQAKGLS 156 (348)
T ss_pred ----CHHHHHHHHHHcCCC
Confidence 014566666666654
No 241
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.57 E-value=4.6e+02 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=29.9
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+-++|.|.+|+..+.++|. +.|.+-+ .++++++.+++
T Consensus 197 IeVEv~tleea~ea~~~ga--DiI~LDn--~s~e~l~~av~ 233 (281)
T PRK06106 197 IEVEVDTLDQLEEALELGV--DAVLLDN--MTPDTLREAVA 233 (281)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEeCC--CCHHHHHHHHH
Confidence 4799999999999999996 4555554 57899999976
No 242
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=28.52 E-value=4.5e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=28.1
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcE-EEecCHHHHHHHHhH
Q 045356 102 CASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNL-TTFDSIQELDKIRKW 158 (419)
Q Consensus 102 VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~-i~vdS~~el~~i~~~ 158 (419)
|-+.+.++.++++|. +.+++ |..+.+.++.+.+.|+.. +-+.+.+|+....+.
T Consensus 70 V~~~~~~~~a~~aGA---~fivs-p~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~ 123 (206)
T PRK09140 70 VLSPEQVDRLADAGG---RLIVT-PNTDPEVIRRAVALGMVVMPGVATPTEAFAALRA 123 (206)
T ss_pred cCCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHc
Confidence 556666666666664 34444 334445555555555432 255566665554443
No 243
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=28.43 E-value=9.8e+02 Score=27.72 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHHh
Q 045356 31 KDGGLLEFMESIIL 44 (419)
Q Consensus 31 ~~~~~~~~~~~~~~ 44 (419)
+++++.+++++++.
T Consensus 515 d~~~L~~i~~~l~~ 528 (1042)
T PLN02819 515 DKEVLDQIIDSLTR 528 (1042)
T ss_pred cHHHHHHHHHHHHH
Confidence 47788888887754
No 244
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.33 E-value=5.1e+02 Score=24.46 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=36.2
Q ss_pred HHHHHHHHHc-CC--cEEEcCHHHHHHHHHC--CCCCCcEEEcCCC---CCHHHHHHHHHCCCcEE
Q 045356 87 PAILETLAAL-GS--NFDCASPSEIQAVLAL--SVSPDRIIYANAC---KPVSHIKYAASVGVNLT 144 (419)
Q Consensus 87 ~~v~~~l~~~-G~--g~~VaS~~E~~~a~~~--G~~~~~Ii~~gp~---k~~~~l~~a~~~gi~~i 144 (419)
.++++.+.+. ++ .+|..+++-++.++++ |. .|+-.-.. +.++-++.+.++|+.++
T Consensus 58 ~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~---~iINsIs~~~~~~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 58 EWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGP---PLINSVSAEGEKLEVVLPLVKKYNAPVV 120 (261)
T ss_pred HHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCC---CEEEeCCCCCccCHHHHHHHHHhCCCEE
Confidence 4567767653 53 8999999999999998 73 45543222 13445666778887654
No 245
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=28.32 E-value=1.4e+02 Score=27.86 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 106 SEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 106 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
.|+..+++.-. ...+++.|++.+.+..+.+++.|...+++.+.
T Consensus 171 ~~v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 171 EEVIAAVKKLS-DIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp HHHHHHHHHSS-SSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred HHHHHHHHhcC-CccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 66666665533 35788888888888888888888887777764
No 246
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.03 E-value=4.2e+02 Score=25.57 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.7
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+-++|.|.+|+..+.++|. +.|.+-+ .++++++++++
T Consensus 202 IeVEv~tl~ea~eal~~ga--DiI~LDn--m~~e~vk~av~ 238 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEGA--ELVLLDN--FPVWQTQEAVQ 238 (289)
T ss_pred EEEEcCCHHHHHHHHHcCC--CEEEeCC--CCHHHHHHHHH
Confidence 5799999999999999996 4455543 57899999984
No 247
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=27.99 E-value=3.9e+02 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=29.5
Q ss_pred EcCCCCCHHHHHHHHHCCCcE---EEec------CHHHHHHHHhHCCC-CeEEEEEec
Q 045356 123 YANACKPVSHIKYAASVGVNL---TTFD------SIQELDKIRKWHPK-CELLIRIKS 170 (419)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gi~~---i~vd------S~~el~~i~~~~~~-~~v~lRv~~ 170 (419)
++| .++.+++..|.+.|+.. |... |.+++++|.+..+. ..|++-++.
T Consensus 6 ICG-lt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~ 62 (208)
T COG0135 6 ICG-LTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNE 62 (208)
T ss_pred ECC-CCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCC
Confidence 455 46778888888877653 2333 47788888887663 445554443
No 248
>PRK07094 biotin synthase; Provisional
Probab=27.76 E-value=5.6e+02 Score=24.70 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHCCCCCCcEEEcCC---CCCHHHHHHHH----H-CCCcE-EEe--cCHHHHHHHHhHCCCCeEEEEEecCCCCC
Q 045356 107 EIQAVLALSVSPDRIIYANA---CKPVSHIKYAA----S-VGVNL-TTF--DSIQELDKIRKWHPKCELLIRIKSPVDGG 175 (419)
Q Consensus 107 E~~~a~~~G~~~~~Ii~~gp---~k~~~~l~~a~----~-~gi~~-i~v--dS~~el~~i~~~~~~~~v~lRv~~~~~~g 175 (419)
|++.+.+.|+ ..+.+.|. ....+.+..++ + .++.+ +++ -+.++++.+.+.+-. .+.+.+....+
T Consensus 78 ~~~~~~~~g~--~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~-~v~~glEs~~~-- 152 (323)
T PRK07094 78 CAKKAYELGY--RTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGAD-RYLLRHETADK-- 152 (323)
T ss_pred HHHHHHHCCC--CEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCC-EEEeccccCCH--
Confidence 3455556677 46777643 22344443332 2 24431 222 346777777765422 23332222110
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHH
Q 045356 176 ARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFH 223 (419)
Q Consensus 176 ~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~ 223 (419)
.....-++ +.+.++..+.++.+++.|+. .+.++-+|-...+.+.+.
T Consensus 153 ~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~ 198 (323)
T PRK07094 153 ELYAKLHP-GMSFENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLA 198 (323)
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHH
Confidence 00111134 67888888999988888886 455666665334444443
No 249
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=27.54 E-value=4.9e+02 Score=23.92 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred cCCcHHHHHHHHHc-C---CcE-EEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-EecCHHHHHHHH
Q 045356 83 CNPEPAILETLAAL-G---SNF-DCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-TFDSIQELDKIR 156 (419)
Q Consensus 83 an~~~~v~~~l~~~-G---~g~-~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~vdS~~el~~i~ 156 (419)
+-...+.++.+.++ + +|. .|-+.+.++.+.++| .+.+++ |..+++-++.|.++|+.++ -+-+..|+....
T Consensus 48 sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG---a~fiVs-P~~~~ev~~~a~~~~ip~~PG~~TptEi~~Al 123 (211)
T COG0800 48 TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG---AQFIVS-PGLNPEVAKAANRYGIPYIPGVATPTEIMAAL 123 (211)
T ss_pred CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC---CCEEEC-CCCCHHHHHHHHhCCCcccCCCCCHHHHHHHH
Confidence 33334455555542 2 122 456677788888887 467765 5567788888888887543 677788888777
Q ss_pred hHCCCCeEEEEEecCCCCCC-------C-----CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEE
Q 045356 157 KWHPKCELLIRIKSPVDGGA-------R-----YPLDSKFGANPEEVAHLLGAAQASGLAVIGV 208 (419)
Q Consensus 157 ~~~~~~~v~lRv~~~~~~g~-------~-----~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Gl 208 (419)
+.+-.. +++.|....|. . ....=.-|++++.+.+.+. .++.-.|+
T Consensus 124 e~G~~~---lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla----~gv~avG~ 180 (211)
T COG0800 124 ELGASA---LKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLDNAADYLA----AGVVAVGL 180 (211)
T ss_pred HcChhh---eeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHHHHHHHHh----CCceEEec
Confidence 764322 45555433321 0 0001234788876655543 34555554
No 250
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.51 E-value=2.1e+02 Score=26.04 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeH--HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcC---HHHHH
Q 045356 35 LLEFMESIILKRQELDEPFYVLDL--GVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCAS---PSEIQ 109 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~tP~~v~d~--~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS---~~E~~ 109 (419)
..++.+.++ +-+-+.+++-. ..-.+.++++++.+|+ +.--.=+=-+++-++...+.|..|-|+- .+=++
T Consensus 18 a~~ia~al~----~gGi~~iEit~~tp~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~ 91 (201)
T PRK06015 18 AVPLARALA----AGGLPAIEITLRTPAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLA 91 (201)
T ss_pred HHHHHHHHH----HCCCCEEEEeCCCccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 345555555 34555555433 4456677888877775 2222333346677888889999988874 34444
Q ss_pred HHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-E--ec---CHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCC
Q 045356 110 AVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-T--FD---SIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSK 183 (419)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-~--vd---S~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sR 183 (419)
.+++.|+ .+.....++.|+..|.++|...+ . .+ ....++.+..-.|. +++.+.
T Consensus 92 ~a~~~~i-----~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~----~~l~pt------------ 150 (201)
T PRK06015 92 AANDSDV-----PLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAG----TFFCPT------------ 150 (201)
T ss_pred HHHHcCC-----CEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCC----CcEEec------------
Confidence 4555553 44445678999999999997643 1 12 24556666555553 455542
Q ss_pred CCCCHHHHHHHHH
Q 045356 184 FGANPEEVAHLLG 196 (419)
Q Consensus 184 fGi~~ee~~~~l~ 196 (419)
-|++++.+.+.++
T Consensus 151 GGV~~~n~~~~l~ 163 (201)
T PRK06015 151 GGISLKNARDYLS 163 (201)
T ss_pred CCCCHHHHHHHHh
Confidence 2788877766653
No 251
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.17 E-value=5.3e+02 Score=24.25 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccCC-----cHHHHHHHHHcCC
Q 045356 59 GVVISLYHQLISNLPMVHPYYAVKCNP-----EPAILETLAALGS 98 (419)
Q Consensus 59 ~~l~~ni~~~~~~~~~~~i~~avKan~-----~~~v~~~l~~~G~ 98 (419)
+.+.+.++++++..+++.+..-+..|+ ....++.+.+.|+
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGv 116 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGV 116 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCC
Confidence 344444555554322333334455554 1234444555554
No 252
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=27.06 E-value=3e+02 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=34.2
Q ss_pred eeeeeccCCcHHHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 77 PYYAVKCNPEPAILETLAALGS--NFDCASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 77 i~~avKan~~~~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
+....--++...+++.+++.|+ -..|.|+.|++.+.+.|. +-|+.-|+
T Consensus 116 ~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~--D~iv~qG~ 165 (330)
T PF03060_consen 116 VVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGA--DAIVAQGP 165 (330)
T ss_dssp EEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT---SEEEEE-T
T ss_pred EEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCC--CEEEEecc
Confidence 3333334556789999999997 789999999999999996 45666653
No 253
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.99 E-value=5e+02 Score=23.86 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=34.6
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEec-----CHHHHHHHHhHCCCCeEEEEEec
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTFD-----SIQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~vd-----S~~el~~i~~~~~~~~v~lRv~~ 170 (419)
+++..|...+.++++.+++.|+..+.+. +.+.+..+.+.....++.+-++.
T Consensus 73 pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~ 128 (243)
T cd04731 73 PLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDA 128 (243)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEe
Confidence 5888888889999999888887544443 45566666665543345555554
No 254
>PRK09234 fbiC FO synthase; Reviewed
Probab=26.91 E-value=2.6e+02 Score=31.42 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=35.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHc--CCcEEEcCHHHHHH
Q 045356 51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNP------EPAILETLAAL--GSNFDCASPSEIQA 110 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~------~~~v~~~l~~~--G~g~~VaS~~E~~~ 110 (419)
.+.|.++.+.|.+.+++..+. .-.+++-.---++ ...+++.+.+. ++.+.+.|+.|+..
T Consensus 552 ~~~y~Ls~eeI~~~a~ea~~~-G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~ 618 (843)
T PRK09234 552 ADAYTLSLDEVADRAWEAWVA-GATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVN 618 (843)
T ss_pred CCcccCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHH
Confidence 346777888888888777653 2233443333333 34556666664 45777777766664
No 255
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.75 E-value=1.1e+02 Score=29.48 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=60.8
Q ss_pred CCCCceeeeeccCCcHH-HHHHHHHcC--C--cE---EEc--------------CHHHHHHHHHCCCCCCcEEEcCCCCC
Q 045356 72 LPMVHPYYAVKCNPEPA-ILETLAALG--S--NF---DCA--------------SPSEIQAVLALSVSPDRIIYANACKP 129 (419)
Q Consensus 72 ~~~~~i~~avKan~~~~-v~~~l~~~G--~--g~---~Va--------------S~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (419)
-|++++..--|+-|-.. +.+.....| . .+ |.. ++.++....+.-.+...|.+= ..+
T Consensus 121 ~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVE--v~t 198 (284)
T PRK06096 121 YPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVE--ADT 198 (284)
T ss_pred CCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEE--CCC
Confidence 36778888888887433 333333433 1 11 221 444444444433333445553 246
Q ss_pred HHHHHHHHHCCCcEEEecC--HHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 045356 130 VSHIKYAASVGVNLTTFDS--IQELDKIRKWHP--KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLG 196 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~--~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~ 196 (419)
.+++..|++.|+..+.+|+ .++++++.+..+ ..++.+.+. -|++++.+.+..+
T Consensus 199 leqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaS--------------GGI~~~ni~~yA~ 255 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLA--------------GGINLNTLKNYAD 255 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEE--------------CCCCHHHHHHHHh
Confidence 7899999999988777876 556666665432 233433333 2677777666543
No 256
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=26.65 E-value=6.3e+02 Score=24.88 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeEEEEEEeeCC
Q 045356 159 HPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASG-LAVIGVAFHIGS 214 (419)
Q Consensus 159 ~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~-l~l~Glh~H~gs 214 (419)
.+...+.+|++.... ..-|++.++..++++.+++.+ +.+ ||.|.|+
T Consensus 206 g~~~~v~iRl~~~~~--------~~~G~~~~e~~~~~~~l~~~G~vd~--i~vs~g~ 252 (343)
T cd04734 206 GPDFIVGIRISGDED--------TEGGLSPDEALEIAARLAAEGLIDY--VNVSAGS 252 (343)
T ss_pred CCCCeEEEEeehhhc--------cCCCCCHHHHHHHHHHHHhcCCCCE--EEeCCCC
Confidence 355678999987421 234788999889988888776 565 5555444
No 257
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.54 E-value=3.8e+02 Score=24.88 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCeEEEEEEeeCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeC-CCCCCCCCHHHHH
Q 045356 192 AHLLGAAQASGLAVIGVAFHIGSEA-------TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIG-GGFACNPGFHEAA 263 (419)
Q Consensus 192 ~~~l~~~~~~~l~l~Glh~H~gs~~-------~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiG-GG~~~~~~~~~~~ 263 (419)
.++.+.+++.||.+...+...+... .+++.-....+.+.++++.+++.| .+ +|.+. |..+.+..-++..
T Consensus 43 ~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg-a~--~i~~~~g~~~~~~~~~~~~ 119 (258)
T PRK09997 43 EELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALG-NK--KINCLVGKTPAGFSSEQIH 119 (258)
T ss_pred HHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhC-CC--EEEECCCCCCCCCCHHHHH
Confidence 3444445678899876433222111 111111223455666777777877 33 34433 3332222223332
Q ss_pred HHHHHHHHh---hCCCccCCCccEEEEcC
Q 045356 264 SIIKDAIQT---YFPNETAAGHLSVISEP 289 (419)
Q Consensus 264 ~~i~~~l~~---~~~~~~~~~~~~li~Ep 289 (419)
+.+.+.+.+ +..+. | +++.+||
T Consensus 120 ~~~~~~l~~l~~~a~~~-G---v~l~lE~ 144 (258)
T PRK09997 120 ATLVENLRYAANMLMKE-D---ILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHHc-C---CEEEEEe
Confidence 333333322 22222 3 8899997
No 258
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.52 E-value=1.3e+02 Score=28.96 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCceeeeeccCCcH-HHHHHHHHcC-C---cEE-------------EcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHH
Q 045356 73 PMVHPYYAVKCNPEP-AILETLAALG-S---NFD-------------CASPSEIQAVLALSVSPDRIIYANACKPVSHIK 134 (419)
Q Consensus 73 ~~~~i~~avKan~~~-~v~~~l~~~G-~---g~~-------------VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~ 134 (419)
++++++-.=|+.|-. .+.+.....| . .+. ..+..++....+.-.+...|.+=- .+.+++.
T Consensus 119 ~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv--~~leea~ 196 (278)
T PRK08385 119 PKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEV--ESLEDAL 196 (278)
T ss_pred CCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEe--CCHHHHH
Confidence 467888888888743 2333333332 1 112 125556554444433334566543 4789999
Q ss_pred HHHHCCCcEEEecC--HHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 045356 135 YAASVGVNLTTFDS--IQELDKIRKWH----PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLG 196 (419)
Q Consensus 135 ~a~~~gi~~i~vdS--~~el~~i~~~~----~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~ 196 (419)
.|++.|+..+.+|+ .+++.++.+.. .+.++.+..+- |++++.+.+.++
T Consensus 197 ~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSG--------------GI~~~ni~~yA~ 250 (278)
T PRK08385 197 KAAKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSG--------------GITPENIEEYAK 250 (278)
T ss_pred HHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEEC--------------CCCHHHHHHHHH
Confidence 99999998778887 45666555532 12334443332 677777766543
No 259
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.36 E-value=1.1e+02 Score=29.64 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHhC--CCCceeeeeccCCcH-HHHHHHHHcC--C----cEE------------EcCHHHHHHHHHCCCCCC-cEE
Q 045356 65 YHQLISNL--PMVHPYYAVKCNPEP-AILETLAALG--S----NFD------------CASPSEIQAVLALSVSPD-RII 122 (419)
Q Consensus 65 i~~~~~~~--~~~~i~~avKan~~~-~v~~~l~~~G--~----g~~------------VaS~~E~~~a~~~G~~~~-~Ii 122 (419)
.+++.+.. +++++..-=|+-|-. .+.+.....| . +.. ..+..++....+.-+++. .|-
T Consensus 121 T~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~ 200 (288)
T PRK07428 121 TRQYVEKIADLPTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIE 200 (288)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEE
Confidence 33444444 357777777888742 2223222221 1 211 345666655555444322 344
Q ss_pred EcCCCCCHHHHHHHHHCCCcEEEecC--HHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 045356 123 YANACKPVSHIKYAASVGVNLTTFDS--IQELDKIRKWHP--KCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLL 195 (419)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~--~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l 195 (419)
+. ..+.+++..|++.|+..+.+|+ .++++++.+..+ ..++.+-.. -|++.+.+.+++
T Consensus 201 VE--v~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAs--------------GGIt~~ni~~ya 261 (288)
T PRK07428 201 VE--TETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEAS--------------GNITLETIRAVA 261 (288)
T ss_pred EE--CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEE--------------CCCCHHHHHHHH
Confidence 43 3578999999999998888886 467777665422 223333222 267877777664
No 260
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=26.35 E-value=5.2e+02 Score=23.84 Aligned_cols=69 Identities=28% Similarity=0.309 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCC
Q 045356 183 KFGANPEEVAHLLGAAQASGLAVIGVAFHIGS-EATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGG 252 (419)
Q Consensus 183 RfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG 252 (419)
.+..+.++..++.+.++..++.+.++..+... -..+.....+.++.+++.++.+.+.| .+.-++..|+.
T Consensus 39 ~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg-~~~vv~~~g~~ 108 (274)
T COG1082 39 LFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG-AKVVVVHPGLG 108 (274)
T ss_pred cCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC-CCeEEeecccC
Confidence 33434334556666677789999998888652 23444444667777777888888887 44433344433
No 261
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.35 E-value=5.1e+02 Score=23.72 Aligned_cols=50 Identities=4% Similarity=0.131 Sum_probs=30.9
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEecCHH-----HHHHHHhHCCCCeEEEEEe
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTFDSIQ-----ELDKIRKWHPKCELLIRIK 169 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~-----el~~i~~~~~~~~v~lRv~ 169 (419)
.+++.|...+.++++.+++.|+..+++.+.. .+.++.+..+..++.+-++
T Consensus 78 ~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid 132 (241)
T PRK13585 78 PVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLD 132 (241)
T ss_pred cEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEE
Confidence 4677777777788888887777655665533 3555555544444544444
No 262
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.31 E-value=5.2e+02 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.1
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+-++|.|.+|+..+.++|. +.|.+-+ .++++++.+++
T Consensus 196 IeVEv~slee~~ea~~~ga--DiImLDn--~s~e~l~~av~ 232 (281)
T PRK06543 196 VEVEVDRLDQIEPVLAAGV--DTIMLDN--FSLDDLREGVE 232 (281)
T ss_pred EEEEeCCHHHHHHHHhcCC--CEEEECC--CCHHHHHHHHH
Confidence 4789999999999999986 4455544 57899988875
No 263
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.21 E-value=5.1e+02 Score=26.33 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=33.7
Q ss_pred EEEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 166 IRIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 166 lRv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
-.++++..+|+. ....+| |.+.++..++++.+++. ++.+ +..+-+|--..+.+.+.+.+
T Consensus 235 ~~l~lglQSgsd~vLk~M~R-~~~~~~~~~~i~~lr~~~pgi~i-~~d~IvGfPGET~edf~~tl 297 (418)
T PRK14336 235 RSLSLPVQAGDDTILAAMRR-GYTNQQYRELVERLKTAMPDISL-QTDLIVGFPSETEEQFNQSY 297 (418)
T ss_pred CceecCCCcCCHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCCEE-EEEEEEECCCCCHHHHHHHH
Confidence 456666554321 112244 66788899999888764 7755 34555565444555554433
No 264
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.14 E-value=2.1e+02 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=33.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCC
Q 045356 160 PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGS 214 (419)
Q Consensus 160 ~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs 214 (419)
+...|.+|++... ..+-|++.++..++++.+++.++.+ |++|.|+
T Consensus 215 ~d~~v~vris~~~--------~~~~g~~~eea~~ia~~Le~~Gvd~--iev~~g~ 259 (338)
T cd04733 215 PGFPVGIKLNSAD--------FQRGGFTEEDALEVVEALEEAGVDL--VELSGGT 259 (338)
T ss_pred CCCeEEEEEcHHH--------cCCCCCCHHHHHHHHHHHHHcCCCE--EEecCCC
Confidence 4568999998632 2456788999989999888888766 6777665
No 265
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=26.13 E-value=5.1e+02 Score=25.81 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHcCC---cEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-----EecC-HHHHHHHHhHCC
Q 045356 90 LETLAALGS---NFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-----TFDS-IQELDKIRKWHP 160 (419)
Q Consensus 90 ~~~l~~~G~---g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-----~vdS-~~el~~i~~~~~ 160 (419)
++.|.++|+ .+.|-+.++++.+...--....=++.--..+....-.|+++|+.-+ ++.+ .+.++.+.+.++
T Consensus 48 i~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak 127 (360)
T PRK00366 48 IKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAK 127 (360)
T ss_pred HHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHH
Q ss_pred CCeEEEEEecCCCCCCCCCCC--CCCCC-CH----HHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHH
Q 045356 161 KCELLIRIKSPVDGGARYPLD--SKFGA-NP----EEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEA 229 (419)
Q Consensus 161 ~~~v~lRv~~~~~~g~~~~~~--sRfGi-~~----ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~ 229 (419)
..++.+||=.+.++ .+.. .|+|- ++ +.+.+-++.+++.+..=.=++.-...-....+.|+...+++
T Consensus 128 ~~~ipIRIGvN~GS---L~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~ 200 (360)
T PRK00366 128 DYGIPIRIGVNAGS---LEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRC 200 (360)
T ss_pred HCCCCEEEecCCcc---ChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcC
No 266
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.82 E-value=1.2e+02 Score=29.32 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=69.1
Q ss_pred HHHHHHhC--CCCceeeeeccCCcH-HHHHHHHHcC--C----cE-E-----------EcCHHHHHHHHHCCCCCCcEEE
Q 045356 65 YHQLISNL--PMVHPYYAVKCNPEP-AILETLAALG--S----NF-D-----------CASPSEIQAVLALSVSPDRIIY 123 (419)
Q Consensus 65 i~~~~~~~--~~~~i~~avKan~~~-~v~~~l~~~G--~----g~-~-----------VaS~~E~~~a~~~G~~~~~Ii~ 123 (419)
-+++.+.+ +++++.--=|+-|-. .+.+.....| . |. | ..+..++....+.-.+...|.+
T Consensus 134 T~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeV 213 (296)
T PRK09016 134 VRRYVELLAGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEV 213 (296)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEE
Confidence 33444443 457787777888743 3333333322 1 11 1 2356565544443333344555
Q ss_pred cCCCCCHHHHHHHHHCCCcEEEecC--HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 045356 124 ANACKPVSHIKYAASVGVNLTTFDS--IQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQAS 201 (419)
Q Consensus 124 ~gp~k~~~~l~~a~~~gi~~i~vdS--~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~ 201 (419)
- .-+.+++..|++.|+..+.+|+ .++++++.+..+. ++.+..+ -|++++.+.+.. ..
T Consensus 214 E--v~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~~~-~~~ieaS--------------GGI~~~ni~~yA----~t 272 (296)
T PRK09016 214 E--VENLDELDQALKAGADIIMLDNFTTEQMREAVKRTNG-RALLEVS--------------GNVTLETLREFA----ET 272 (296)
T ss_pred E--eCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhcC-CeEEEEE--------------CCCCHHHHHHHH----hc
Confidence 3 2468999999999998888887 4566666554332 3433333 267777766654 34
Q ss_pred CCeE--EEEEEe
Q 045356 202 GLAV--IGVAFH 211 (419)
Q Consensus 202 ~l~l--~Glh~H 211 (419)
|+.+ .|--+|
T Consensus 273 GVD~Is~galth 284 (296)
T PRK09016 273 GVDFISVGALTK 284 (296)
T ss_pred CCCEEEeCcccc
Confidence 4444 444455
No 267
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=25.68 E-value=5.8e+02 Score=24.15 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCC-cEEEcC-----HHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecC---------HHH
Q 045356 87 PAILETLAALGS-NFDCAS-----PSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDS---------IQE 151 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS-----~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS---------~~e 151 (419)
.++++...+.|+ .+.+.. .+-++.+.+. .. -.+.+.|...+ +.++..++.|+..+++.| .+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~~n~~~i~~i~~~-~~-~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~ 117 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGPNNDDAAKEALHA-YP-GGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKR 117 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcHHHHHHHHHh-CC-CCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHH
Confidence 456676777775 444432 2223333332 11 36888888775 999999999998788877 457
Q ss_pred HHHHHhHCCCCeEEEEEec
Q 045356 152 LDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 152 l~~i~~~~~~~~v~lRv~~ 170 (419)
++.+.+.....++.+-|+.
T Consensus 118 ~~~i~~~fG~~~IvvsiD~ 136 (253)
T TIGR02129 118 LKEIVSLVGKDRLIVDLSC 136 (253)
T ss_pred HHHHHHHhCCCCEEEEEEE
Confidence 7777776644566666665
No 268
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.67 E-value=4e+02 Score=24.11 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=43.4
Q ss_pred CcHHHHHHHHH-cCC--cEEEcCHHHHHHHHHCCCCCCcEEEcC----------CCCCHHHHHHHHHC-CCcEEE---ec
Q 045356 85 PEPAILETLAA-LGS--NFDCASPSEIQAVLALSVSPDRIIYAN----------ACKPVSHIKYAASV-GVNLTT---FD 147 (419)
Q Consensus 85 ~~~~v~~~l~~-~G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~g----------p~k~~~~l~~a~~~-gi~~i~---vd 147 (419)
....+++.+.+ .+. ..++.|.+|+..+.++|++ -|.++. .....+.++.+.+. ++.++. +.
T Consensus 106 ~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d--~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~ 183 (221)
T PRK01130 106 TLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFD--FIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRIN 183 (221)
T ss_pred CHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCC--EEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC
Confidence 34578888888 675 5788899999999999973 233211 00112344444332 444333 45
Q ss_pred CHHHHHHHHhHC
Q 045356 148 SIQELDKIRKWH 159 (419)
Q Consensus 148 S~~el~~i~~~~ 159 (419)
+.++++.+.+.+
T Consensus 184 t~~~~~~~l~~G 195 (221)
T PRK01130 184 TPEQAKKALELG 195 (221)
T ss_pred CHHHHHHHHHCC
Confidence 667777766553
No 269
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=25.67 E-value=6e+02 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=25.4
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-cEE
Q 045356 56 LDLGVVISLYHQLISNLPMVHPYYAVKCNPE----PAILETLAALGS-NFD 101 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~~~~i~~avKan~~----~~v~~~l~~~G~-g~~ 101 (419)
-|++.+.+-++.+++... +-..+|--++ ..+++.+.+.|+ ++.
T Consensus 151 ~~~~~~~~iv~~v~~~~~---~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 151 QDPELVEEICRWVREAVK---IPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred cCHHHHHHHHHHHHHhcC---CCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 455666666677766431 2233555543 367787778887 554
No 270
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=25.51 E-value=4.6e+02 Score=24.59 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEE-EcCCCCCHHHHHHHHHCCCcEEEec---
Q 045356 72 LPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRII-YANACKPVSHIKYAASVGVNLTTFD--- 147 (419)
Q Consensus 72 ~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii-~~gp~k~~~~l~~a~~~gi~~i~vd--- 147 (419)
.+++++..++-.++...- + ..+.|+. ...++.|+ ++ ++ +-++ ++.|....+.+..|+++|+.++.--
T Consensus 24 ~~~~elvav~d~~~~~~~-~-~~~~~i~-~~~dl~~l---l~-~~--DvVid~t~p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 24 AEDLELVAAVDRPGSPLV-G-QGALGVA-ITDDLEAV---LA-DA--DVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CCCCEEEEEEecCCcccc-c-cCCCCcc-ccCCHHHh---cc-CC--CEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 467777776665543211 1 1112221 23455554 32 33 4344 5665555667788899998754222
Q ss_pred CHHHHHHHHhHCCCCeEEEEEecC
Q 045356 148 SIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 148 S~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
|.++++.+.+.+.+.+ +-+.++
T Consensus 95 s~~~~~~l~~aa~~~~--v~~s~n 116 (257)
T PRK00048 95 TEEQLAELEEAAKKIP--VVIAPN 116 (257)
T ss_pred CHHHHHHHHHHhcCCC--EEEECc
Confidence 5888888888654444 444443
No 271
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.45 E-value=7.1e+02 Score=25.08 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=32.3
Q ss_pred CcEEEEeHHHHHHHHHHHHHhCC---CCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcC
Q 045356 51 EPFYVLDLGVVISLYHQLISNLP---MVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYAN 125 (419)
Q Consensus 51 tP~~v~d~~~l~~ni~~~~~~~~---~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~g 125 (419)
||.+. +.+.+.+-++.+++.++ +.+ ..+=+|+.. .+.+.++.++++|+ ++|.+.-
T Consensus 76 Tps~l-~~~~l~~ll~~i~~~~~~~~~~e--it~E~~P~~---------------lt~e~l~~l~~~Gv--nrislGv 133 (400)
T PRK07379 76 TPSLL-SVEQLERILTTLDQRFGIAPDAE--ISLEIDPGT---------------FDLEQLQGYRSLGV--NRVSLGV 133 (400)
T ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCCCE--EEEEeCCCc---------------CCHHHHHHHHHCCC--CEEEEEc
Confidence 55543 77888888888877664 223 334455421 14556666667776 4666643
No 272
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=25.27 E-value=4.1e+02 Score=24.67 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCc-EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeEE
Q 045356 130 VSHIKYAASVGVN-LTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA--SGLAVI 206 (419)
Q Consensus 130 ~~~l~~a~~~gi~-~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~--~~l~l~ 206 (419)
-+-|+.|.+.+.. +-.|+|.+|+....+.+.+. +-.|.+...|. ..+.|-|++.+++.++++.+.+ .+++-.
T Consensus 146 vemlr~A~~k~l~t~~yV~s~~eAqa~~~aGadi---iv~hmg~ttgG--~Igar~~~Sl~~~vel~~~~~~aar~v~kd 220 (276)
T COG5564 146 VEMLREAHAKDLLTTPYVFSFEEAQAMTKAGADI---IVAHMGLTTGG--LIGARSALSLADCVELIELAAEAARGVRKD 220 (276)
T ss_pred HHHHHHHHhccccccceecCHHHHHHHHHcCcce---eeecccccccc--eeccccccCHHHHHHHHHHHHHHHhhhhhc
Confidence 3455666666643 34899999999988876432 22233222211 1147888888888887776533 244332
Q ss_pred E-EEEeeCCCCCCHHH
Q 045356 207 G-VAFHIGSEATNLDA 221 (419)
Q Consensus 207 G-lh~H~gs~~~~~~~ 221 (419)
- .-+| |.-+.+++.
T Consensus 221 ~i~l~~-GGPi~~p~d 235 (276)
T COG5564 221 VIPLCH-GGPISMPED 235 (276)
T ss_pred eeeecc-CCCcCCchh
Confidence 2 2355 444666654
No 273
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.22 E-value=8.8e+02 Score=26.10 Aligned_cols=170 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceeeee-------ccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEE--EcCCCCCHHHH
Q 045356 63 SLYHQLISNLPMVHPYYAV-------KCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRII--YANACKPVSHI 133 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~av-------Kan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii--~~gp~k~~~~l 133 (419)
+.++.+++.+|++++---+ =.+....|++.. ++.+.+.|++-=||. ++-.-.....+
T Consensus 64 erl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~--------------v~~a~~~Gidv~Rifd~lnd~~n~~~~i 129 (596)
T PRK14042 64 SRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF--------------VKLAVNNGVDVFRVFDALNDARNLKVAI 129 (596)
T ss_pred HHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH--------------HHHHHHcCCCEEEEcccCcchHHHHHHH
Q ss_pred HHHHHCCCcEEEe--------cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCCe
Q 045356 134 KYAASVGVNLTTF--------DSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGA-NPEEVAHLLGAAQASGLA 204 (419)
Q Consensus 134 ~~a~~~gi~~i~v--------dS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi-~~ee~~~~l~~~~~~~l~ 204 (419)
+.+.+.|...... .+++.+..+++......+. +|.+. --.|+ .|+++.++++.+++.-=.
T Consensus 130 ~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad-~I~Ik----------DtaG~l~P~~v~~lv~alk~~~~i 198 (596)
T PRK14042 130 DAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD-SIAIK----------DMAGLLTPTVTVELYAGLKQATGL 198 (596)
T ss_pred HHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEeC----------CcccCCCHHHHHHHHHHHHhhcCC
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCCCHHHHHHHHHH
Q 045356 205 VIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKD 268 (419)
Q Consensus 205 l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~~~~~~~~~i~~ 268 (419)
-.++|+| .+.......+..+++.-.+. ++..+--+|||-+- +..+.+...+..
T Consensus 199 pi~~H~H-nt~Gla~an~laAieaGad~---------iD~ai~glGg~tGn-~~tE~lv~~L~~ 251 (596)
T PRK14042 199 PVHLHSH-STSGLASICHYEAVLAGCNH---------IDTAISSFSGGASH-PPTEALVAALTD 251 (596)
T ss_pred EEEEEeC-CCCCcHHHHHHHHHHhCCCE---------EEeccccccCCCCc-HhHHHHHHHHHh
No 274
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=25.15 E-value=3.2e+02 Score=27.53 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCcccccccccccCccccCCcceeeecCCCCHHHHHHHHHhhcC-C-------CCCcEEEEeHHHHHHHHHHHHHhC-CC
Q 045356 4 LPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQ-E-------LDEPFYVLDLGVVISLYHQLISNL-PM 74 (419)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~tP~~v~d~~~l~~ni~~~~~~~-~~ 74 (419)
.|....|.||-.-==...+...-+ +-+++.++++++.++.... . -|.|++. ...+-+.+..+++.. .+
T Consensus 12 kpt~~~CNL~C~YC~~~~~~~~~~-~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~--~~~f~~~~~~l~~k~~~~ 88 (378)
T COG0641 12 KPTGFECNLDCKYCFYLEKESLQR-IMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLA--GLDFYRKAVALQQKYANG 88 (378)
T ss_pred CcccCccCCCCCeeCcccCCCCCC-CCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccc--hHHHHHHHHHHHHHHhcC
Confidence 355555666543211122222222 6778999999999987752 1 1455533 233444444444444 37
Q ss_pred CceeeeeccCC---cHHHHHHHHHcCC--cEEEcCHHHHH
Q 045356 75 VHPYYAVKCNP---EPAILETLAALGS--NFDCASPSEIQ 109 (419)
Q Consensus 75 ~~i~~avKan~---~~~v~~~l~~~G~--g~~VaS~~E~~ 109 (419)
.++..++-+|. +.+.++.+.+.+. |+-.-.+.|+-
T Consensus 89 ~~i~~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp~eih 128 (378)
T COG0641 89 KTISNALQTNGTLLNDEWAEFLAEHDFLIGISIDGPEEIH 128 (378)
T ss_pred CeeEEEEEEcccccCHHHHHHHHhcCceEEEeccCchHhc
Confidence 88999999999 6888999988886 44444454543
No 275
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.12 E-value=6.5e+02 Score=25.04 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=57.7
Q ss_pred HHHHHHHHHCCCcEEEecCHHHHHHHH-hHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEE
Q 045356 130 VSHIKYAASVGVNLTTFDSIQELDKIR-KWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGV 208 (419)
Q Consensus 130 ~~~l~~a~~~gi~~i~vdS~~el~~i~-~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Gl 208 (419)
.+.++.+++.|++- .+-..-.++... ....+.++.||++.....-......+..=.+.+ ++ -+.+-.=.|+
T Consensus 94 ~~~i~~a~~~g~dA-v~~~~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVe---dA----lrLGAdAV~~ 165 (348)
T PRK09250 94 ENIVKLAIEAGCNA-VASTLGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVE---DA----LRLGAVAVGA 165 (348)
T ss_pred HHHHHHHHhcCCCE-EEeCHHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHH---HH----HHCCCCEEEE
Confidence 44667778888875 455566666643 234567799999864211000000011111222 22 2356667888
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 045356 209 AFHIGSEATNLDAFHAAIAEAKTVFETAARLGM 241 (419)
Q Consensus 209 h~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~ 241 (419)
|..+||.. + .++++.+.++.+++.++|+
T Consensus 166 tvy~Gs~~---E--~~ml~~l~~i~~ea~~~Gl 193 (348)
T PRK09250 166 TIYFGSEE---S--RRQIEEISEAFEEAHELGL 193 (348)
T ss_pred EEecCCHH---H--HHHHHHHHHHHHHHHHhCC
Confidence 88888632 1 4678888888899999994
No 276
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.85 E-value=1.3e+02 Score=28.99 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 100 FDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 100 ~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+||.|.+|+..+.++|. +.|++.+ .++++++.+++
T Consensus 193 VEv~tleea~ea~~~Ga--DiI~lDn--~~~e~l~~~v~ 227 (277)
T TIGR01334 193 VEADTIEQALTVLQASP--DILQLDK--FTPQQLHHLHE 227 (277)
T ss_pred EECCCHHHHHHHHHcCc--CEEEECC--CCHHHHHHHHH
No 277
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.79 E-value=7.3e+02 Score=25.00 Aligned_cols=59 Identities=8% Similarity=0.183 Sum_probs=34.1
Q ss_pred EEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEEEEeeCCCCCCHHHHHHHHH
Q 045356 167 RIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQA--SGLAVIGVAFHIGSEATNLDAFHAAIA 227 (419)
Q Consensus 167 Rv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~--~~l~l~Glh~H~gs~~~~~~~~~~~~~ 227 (419)
.++++..+++. ....+| +.+.++..++++.+++ +++.+.+ .+-+|--..+.+.+.+.++
T Consensus 250 ~l~lglESgs~~vLk~m~R-~~~~~~~~~~v~~l~~~~~gi~i~~-~~IvG~PgET~ed~~~tl~ 312 (414)
T TIGR01579 250 HLHLSLQSGSDRVLKRMRR-KYTRDDFLKLVNKLRSVRPDYAFGT-DIIVGFPGESEEDFQETLR 312 (414)
T ss_pred CeEECCCcCChHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCeeee-eEEEECCCCCHHHHHHHHH
Confidence 45555544321 112234 4677889999998887 6776543 4555654555666655443
No 278
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=24.58 E-value=5.7e+02 Score=23.68 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=10.4
Q ss_pred CHHHHHHHHHCCCcEEEecCHH
Q 045356 129 PVSHIKYAASVGVNLTTFDSIQ 150 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS~~ 150 (419)
++++++.+++.|+.-+..|..+
T Consensus 219 ~~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 219 DPARARELLRWGVDCICTDRID 240 (249)
T ss_pred CHHHHHHHHHcCCCEEEeCChH
Confidence 3445555555555444444443
No 279
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.47 E-value=5.6e+02 Score=23.62 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=14.6
Q ss_pred CHHHHHHHHHCCCcE--EEecCHHHHHHHHh
Q 045356 129 PVSHIKYAASVGVNL--TTFDSIQELDKIRK 157 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~--i~vdS~~el~~i~~ 157 (419)
+++.++.+-+.|+.+ .++++.++++.+.+
T Consensus 220 ~~~~i~~~~~~G~~v~vwtvn~~~~~~~~~~ 250 (263)
T cd08567 220 TKELVDEAHALGLKVVPWTVNDPEDMARLID 250 (263)
T ss_pred CHHHHHHHHHCCCEEEEecCCCHHHHHHHHH
Confidence 445555555555432 25555555555443
No 280
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.45 E-value=1.4e+02 Score=28.90 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=66.9
Q ss_pred HHHHHhC--CCCceeeeeccCCcH-HHHHHHHHcC--C--cEE--------------EcCHHHHHHHHHCCCCCCcEEEc
Q 045356 66 HQLISNL--PMVHPYYAVKCNPEP-AILETLAALG--S--NFD--------------CASPSEIQAVLALSVSPDRIIYA 124 (419)
Q Consensus 66 ~~~~~~~--~~~~i~~avKan~~~-~v~~~l~~~G--~--g~~--------------VaS~~E~~~a~~~G~~~~~Ii~~ 124 (419)
+++.+.. ++++++.-=|+.|-. .+.+.....| . .+. +.+..++....+.-.+...|.+-
T Consensus 126 ~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVE 205 (289)
T PRK07896 126 AAWVDAVAGTKAKIRDTRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVE 205 (289)
T ss_pred HHHHHHhcCCCeEEEecCCCCCcchHHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEE
Confidence 3344443 467888888888843 3333333322 1 111 22555554444433333445553
Q ss_pred CCCCCHHHHHHHHHCCCcEEEecCH--HHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 045356 125 NACKPVSHIKYAASVGVNLTTFDSI--QELDKIRKWH--PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQA 200 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~~i~vdS~--~el~~i~~~~--~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~ 200 (419)
..+-+++..|++.|+..+.+|+. +++++..+.. ...++.+.++ -|++++.+.+..+
T Consensus 206 --v~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaS--------------GGI~~~ni~~yA~---- 265 (289)
T PRK07896 206 --VDSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESS--------------GGLTLDTAAAYAE---- 265 (289)
T ss_pred --cCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEE--------------CCCCHHHHHHHHh----
Confidence 24678999999999988888874 5566555432 1233434333 2678777766543
Q ss_pred cCCeEEEE
Q 045356 201 SGLAVIGV 208 (419)
Q Consensus 201 ~~l~l~Gl 208 (419)
.|+.+..+
T Consensus 266 tGvD~Is~ 273 (289)
T PRK07896 266 TGVDYLAV 273 (289)
T ss_pred cCCCEEEe
Confidence 45555443
No 281
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.28 E-value=5.7e+02 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=25.8
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEe-----cCHHHHHHHHhHCCCCeEEEEEec
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTF-----DSIQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~v-----dS~~el~~i~~~~~~~~v~lRv~~ 170 (419)
.+.+.|...+.++++.+++.|+..+++ .+.+.++.+.+.....++.+-++.
T Consensus 75 ~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~ 130 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDY 130 (232)
T ss_pred CEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 355555555556666666555543333 334455555554433345554444
No 282
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.22 E-value=3.1e+02 Score=26.82 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=27.5
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----------cHHHHHHHHHcCC-cEEEc
Q 045356 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNP----------EPAILETLAALGS-NFDCA 103 (419)
Q Consensus 53 ~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~----------~~~v~~~l~~~G~-g~~Va 103 (419)
.+.-+++.+.+-++++++..+ .. ..+|.-. ...+++.+.+.|+ .+.|.
T Consensus 103 ~Ll~~p~~~~~iv~av~~~~~-~P--VsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvH 161 (318)
T TIGR00742 103 CLMGNADLVADCVKAMQEAVN-IP--VTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVH 161 (318)
T ss_pred HhhcCHHHHHHHHHHHHHHhC-CC--eEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEe
Confidence 345577777778888877652 11 2233311 1356777777887 44443
No 283
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=24.22 E-value=5.5e+02 Score=23.38 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhhcCCCCCcEE----EEeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCCcEE---Ec
Q 045356 34 GLLEFMESIILKRQELDEPFY----VLDLGVVISLYHQLISNLPMVHPYYAVKCNPE---PAILETLAALGSNFD---CA 103 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~----v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~---~~v~~~l~~~G~g~~---Va 103 (419)
.+.++++++.+.. +.|.. -.|.+.+.+..+.+.+..++ ..+|--.. ...++.|.+.|+... |-
T Consensus 38 ~~~~~~~~i~~~~---~~~v~~qv~~~~~e~~i~~a~~l~~~~~~----~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~ 110 (211)
T cd00956 38 DFEAVLKEICEII---DGPVSAQVVSTDAEGMVAEARKLASLGGN----VVVKIPVTEDGLKAIKKLSEEGIKTNVTAIF 110 (211)
T ss_pred CHHHHHHHHHHhc---CCCEEEEEEeCCHHHHHHHHHHHHHhCCC----EEEEEcCcHhHHHHHHHHHHcCCceeeEEec
Confidence 4667777776442 34443 35677888888888776664 33454433 567888888887444 88
Q ss_pred CHHHHHHHHHCCC
Q 045356 104 SPSEIQAVLALSV 116 (419)
Q Consensus 104 S~~E~~~a~~~G~ 116 (419)
|...+..+.++|.
T Consensus 111 s~~Qa~~Aa~AGA 123 (211)
T cd00956 111 SAAQALLAAKAGA 123 (211)
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999985
No 284
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.20 E-value=4.7e+02 Score=22.65 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEEeeC---CC--CCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC-CCCHHH
Q 045356 188 PEEVAHLLGAAQASGLAVIGVAFHIG---SE--ATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC-NPGFHE 261 (419)
Q Consensus 188 ~ee~~~~l~~~~~~~l~l~Glh~H~g---s~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~-~~~~~~ 261 (419)
.+.+.+.++.++..+... +.+|.| .. ....+.+....+.+.++.+.+++.| ..+.+=+.++.... ....++
T Consensus 70 ~~~~~~~i~~a~~lg~~~--i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-v~i~lE~~~~~~~~~~~~~~~ 146 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKY--IVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYG-VRIALENHPGPFSETPFSVEE 146 (213)
T ss_dssp HHHHHHHHHHHHHHTBSE--EEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHT-SEEEEE-SSSSSSSEESSHHH
T ss_pred HHHHHHHHHHHHHhCCCc--eeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhc-ceEEEecccCccccchhhHHH
Confidence 345566666666667666 445655 22 2234566677778888888888888 67665565555532 111233
Q ss_pred HHHHHHHHHHhhCCCccCCCccEEEEcCcchhcc
Q 045356 262 AASIIKDAIQTYFPNETAAGHLSVISEPGRFLAD 295 (419)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~ 295 (419)
+...+++.-. +...+++.+|.+...
T Consensus 147 ----~~~~l~~~~~-----~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 147 ----IYRLLEEVDS-----PNVGICFDTGHLIMA 171 (213)
T ss_dssp ----HHHHHHHHTT-----TTEEEEEEHHHHHHT
T ss_pred ----HHHHHhhcCC-----CcceEEEehHHHHHc
Confidence 3334444432 237888888877655
No 285
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.13 E-value=7.3e+02 Score=24.77 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=39.3
Q ss_pred EEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCH-HHH----HHHHHHHHHHHHHHHHcC
Q 045356 166 IRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNL-DAF----HAAIAEAKTVFETAARLG 240 (419)
Q Consensus 166 lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~-~~~----~~~~~~~~~l~~~l~~~g 240 (419)
+||||+.-. .......|=..+.+.++++.+++.++-+. +-...||-..+. +.| ....+.+.+-++.+++.+
T Consensus 98 iRINPGNi~---~~~~~~~g~~~~~~~~vv~~ake~~ipIR-IGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~ 173 (359)
T PF04551_consen 98 IRINPGNIV---DEFQEELGSIREKVKEVVEAAKERGIPIR-IGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELG 173 (359)
T ss_dssp EEE-TTTSS-------SS-SS-HHHHHHHHHHHHHHT-EEE-EEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEECCCccc---ccccccccchHHHHHHHHHHHHHCCCCEE-EecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCC
Confidence 899996310 00111124346788899998888776553 556666643221 111 233444555566677888
Q ss_pred CCcceEEE
Q 045356 241 MTKMRVLD 248 (419)
Q Consensus 241 ~~~~~~ld 248 (419)
+.--+++
T Consensus 174 -f~~iviS 180 (359)
T PF04551_consen 174 -FDDIVIS 180 (359)
T ss_dssp --GGEEEE
T ss_pred -CCcEEEE
Confidence 3444455
No 286
>PRK13774 formimidoylglutamase; Provisional
Probab=23.94 E-value=4.5e+02 Score=25.53 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHCCCCCCcEEEcCCC---CCHHHHHHHHHCCCcEEEecCHHH-----HHHHH-hHC-CCCeEEEEEecCCCCCC-
Q 045356 108 IQAVLALSVSPDRIIYANAC---KPVSHIKYAASVGVNLTTFDSIQE-----LDKIR-KWH-PKCELLIRIKSPVDGGA- 176 (419)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~---k~~~~l~~a~~~gi~~i~vdS~~e-----l~~i~-~~~-~~~~v~lRv~~~~~~g~- 176 (419)
+..+.+.+. +.+++..|-- .+.++.+++-+.|+..+..+.+.+ ++.+. ... ....+.|-++++.-..+
T Consensus 172 ~~~i~e~~~-~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~ 250 (311)
T PRK13774 172 FRQILEEDE-NTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAF 250 (311)
T ss_pred HHHHHhcCC-CCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhh
Confidence 444555442 2355544432 246778888888886555555433 22222 221 12357666666531100
Q ss_pred --CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q 045356 177 --RYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFH 211 (419)
Q Consensus 177 --~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H 211 (419)
-..+....|++..|+.++++.+... -++.|+.+-
T Consensus 251 aPGtgtP~pgGLt~~e~l~il~~l~~~-~~v~g~Div 286 (311)
T PRK13774 251 APGVSAPAVLGLYPHTVLELAKRIIPS-DKVSSVSIA 286 (311)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 1233478999999999999876443 356676554
No 287
>PRK06852 aldolase; Validated
Probab=23.92 E-value=6.8e+02 Score=24.37 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred CHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHh--cCCe
Q 045356 129 PVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARY--PLDSKFGANPEEVAHLLGAAQA--SGLA 204 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~--~~~sRfGi~~ee~~~~l~~~~~--~~l~ 204 (419)
..+.++.+++.|++- .+-+.-.++......+...+.||++.......+. +..+..=.+.+ +.++.-.. .+..
T Consensus 61 p~~~i~~~~~~g~da-v~~~~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVe---eAvrlG~~~~~~Ad 136 (304)
T PRK06852 61 PEHLFRIASKAKIGV-FATQLGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVE---QVVEFKENSGLNIL 136 (304)
T ss_pred HHHHHHHHHhcCCCE-EEeCHHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHH---HHHhcCCccCCCce
Confidence 344667777878875 4555666666555556678999998643211000 01111111223 33321111 2245
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 045356 205 VIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKM 244 (419)
Q Consensus 205 l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 244 (419)
=.|+|..+|+. .+ .++++.+.++.+.+.++| .++
T Consensus 137 AV~v~v~~Gs~---~E--~~ml~~l~~v~~ea~~~G-lPl 170 (304)
T PRK06852 137 GVGYTIYLGSE---YE--SEMLSEAAQIIYEAHKHG-LIA 170 (304)
T ss_pred EEEEEEecCCH---HH--HHHHHHHHHHHHHHHHhC-CcE
Confidence 56666666742 12 467888888889999999 453
No 288
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=23.91 E-value=3e+02 Score=32.19 Aligned_cols=132 Identities=8% Similarity=0.104 Sum_probs=70.0
Q ss_pred ecCCCCHHHHHHHHHhhcCCC-CCcEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccC----CcHHHHHHHHHcCCcEE
Q 045356 29 ITKDGGLLEFMESIILKRQEL-DEPFYV--LDLGVVISLYHQLISNLPMVHPYYAVKCN----PEPAILETLAALGSNFD 101 (419)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~tP~~v--~d~~~l~~ni~~~~~~~~~~~i~~avKan----~~~~v~~~l~~~G~g~~ 101 (419)
++.++.+..++..+... ... +.|+-+ .+.+.++.-++.+ ++.-+.=.+-.- ....+++++.+.|+.+-
T Consensus 394 vd~~eem~rvv~~i~~~-~~~~~vPlsIDS~~~~v~eaaLk~~----~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV 468 (1178)
T TIGR02082 394 LDGVAAMKRFLNLLASE-PDISTVPLMLDSSEWAVLEAGLKCI----QGKCIVNSISLKDGEERFIETAKLIKEYGAAVV 468 (1178)
T ss_pred CCHHHHHHHHHHHHHhc-cCCCCCeEEEeCCcHHHHHHHHHhc----CCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEE
Confidence 33345556666655432 112 566533 4445555555443 233333333332 23468888889998777
Q ss_pred EcCHHH-----------------HHHHHH-CCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCe
Q 045356 102 CASPSE-----------------IQAVLA-LSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCE 163 (419)
Q Consensus 102 VaS~~E-----------------~~~a~~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~ 163 (419)
+...+| ++.+.+ +|+++++|++-....+-..=.. +++. -.++.++.++.+.+..|..+
T Consensus 469 ~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~--e~n~--~~~~~le~i~~ik~~~pg~~ 544 (1178)
T TIGR02082 469 VMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIFDPNILTIATGIE--EHRR--YAINFIEAIRWIKEELPDAK 544 (1178)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCccccccCch--HHHH--HHHHHHHHHHHHHHhCCCCc
Confidence 666532 344555 8999999998744332100000 1111 13455666777766666666
Q ss_pred EEEEEe
Q 045356 164 LLIRIK 169 (419)
Q Consensus 164 v~lRv~ 169 (419)
+.+-++
T Consensus 545 ~~~GlS 550 (1178)
T TIGR02082 545 ISGGVS 550 (1178)
T ss_pred eEEEec
Confidence 666554
No 289
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=23.87 E-value=3.4e+02 Score=26.40 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHcCCcEEEc----C---HHHHHHHHHCCCCCCcEEEcCC--CCCHHHHHHHHHCCCcEEEecCH
Q 045356 89 ILETLAALGSNFDCA----S---PSEIQAVLALSVSPDRIIYANA--CKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 89 v~~~l~~~G~g~~Va----S---~~E~~~a~~~G~~~~~Ii~~gp--~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
.+++..+.|+.+-+- + .+.++.+.+.|++++++++..- ..+...++.+++.|+. +.+|.+
T Consensus 147 aa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~-l~~D~~ 215 (308)
T PF02126_consen 147 AARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVY-LEFDTI 215 (308)
T ss_dssp HHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-E-EEETTT
T ss_pred HHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCE-EEecCC
Confidence 334444456544333 2 5677788889999999998632 2345677788888875 688877
No 290
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.73 E-value=6e+02 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEE
Q 045356 160 PKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVA 209 (419)
Q Consensus 160 ~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh 209 (419)
++..|++|++.... -.-|++.++..++++.+.+.++.+..++
T Consensus 214 ~~~~v~~R~s~~~~--------~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 214 KDFILGYRFSPEEP--------EEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred CCceEEEEECcccc--------cCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 56789999987421 2237888999899998888887764443
No 291
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.53 E-value=5.9e+02 Score=24.66 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=48.9
Q ss_pred EEEeHHHHHHHHHHHHHhCC---CCceeeeeccCC--cHHHHHHHHHcCC-cEEE------------cCHHHHHHHHHCC
Q 045356 54 YVLDLGVVISLYHQLISNLP---MVHPYYAVKCNP--EPAILETLAALGS-NFDC------------ASPSEIQAVLALS 115 (419)
Q Consensus 54 ~v~d~~~l~~ni~~~~~~~~---~~~i~~avKan~--~~~v~~~l~~~G~-g~~V------------aS~~E~~~a~~~G 115 (419)
++-|++.+.+-++++++..+ .++++--..-+. ...+++.+.+.|+ .+.| +..+.+..+++.
T Consensus 103 Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~- 181 (309)
T PF01207_consen 103 LLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEA- 181 (309)
T ss_dssp GGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-
T ss_pred hhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhc-
Confidence 34577888888899988765 122222222112 3678888888997 5555 445555555554
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHC-CCc
Q 045356 116 VSPDRIIYANACKPVSHIKYAASV-GVN 142 (419)
Q Consensus 116 ~~~~~Ii~~gp~k~~~~l~~a~~~-gi~ 142 (419)
++ -.++.+|.+.+.+++...++. |+.
T Consensus 182 ~~-ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 182 LP-IPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp -T-SEEEEESS--SHHHHHHHCCCH-SS
T ss_pred cc-ceeEEcCccCCHHHHHHHHHhcCCc
Confidence 33 367788888888888877654 444
No 292
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=23.41 E-value=1.8e+02 Score=25.72 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=11.0
Q ss_pred cEEEcCHHHHHHHHHCCC
Q 045356 99 NFDCASPSEIQAVLALSV 116 (419)
Q Consensus 99 g~~VaS~~E~~~a~~~G~ 116 (419)
+..|.|..|+..+.+.|.
T Consensus 100 g~s~h~~~e~~~a~~~g~ 117 (196)
T TIGR00693 100 GVSTHNLEELAEAEAEGA 117 (196)
T ss_pred EEeCCCHHHHHHHhHcCC
Confidence 666666666666655554
No 293
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=23.35 E-value=7e+02 Score=25.09 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=61.1
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCC-cEEEcCH-----------------------HHH
Q 045356 56 LDLGVVISLYHQLISNLPMVHPYYAVKCNPE---PAILETLAALGS-NFDCASP-----------------------SEI 108 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~~~~~~~i~~avKan~~---~~v~~~l~~~G~-g~~VaS~-----------------------~E~ 108 (419)
.+.+.+.+.++.+++..++.. ..+|-... ..+++.+...|+ .+.|+.. .|+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~p--V~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKP--IGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCce--EEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 567789999999999876433 33777764 567777766656 4555443 133
Q ss_pred HHHH-HCCCC-CCcEEEcCCCCCHHHHHHHHHCCCcEEEecCH
Q 045356 109 QAVL-ALSVS-PDRIIYANACKPVSHIKYAASVGVNLTTFDSI 149 (419)
Q Consensus 109 ~~a~-~~G~~-~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~ 149 (419)
..++ +.|.. .-.|+..|.+.+..++..++..|...+.+-+.
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~ 316 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA 316 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechH
Confidence 3322 22322 13578889999999999999999876666554
No 294
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.31 E-value=1.9e+02 Score=27.61 Aligned_cols=133 Identities=23% Similarity=0.264 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHH
Q 045356 60 VVISLYHQLISNLPMVHPYYAVKCNPE----PAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKY 135 (419)
Q Consensus 60 ~l~~ni~~~~~~~~~~~i~~avKan~~----~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~ 135 (419)
++....+++++.-.+.=+-|.+-..++ .++++.|.+.|+. +++.|++-++=+.-||.- ..--.+
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD-----------~iELGvPfSDPvADGP~I-q~A~~r 70 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGAD-----------ILELGVPFSDPVADGPTI-QAAHLR 70 (265)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCC-----------EEEecCCCCCcCccCHHH-HHHHHH
Confidence 355666666655444556788888874 5677777788885 367888877777778743 344466
Q ss_pred HHHCCCcEEEecCHHHHHHHHhHCCCCeEEEE--EecCCCCC--CCCCCCCCCCC--------CHHHHHHHHHHHHhcCC
Q 045356 136 AASVGVNLTTFDSIQELDKIRKWHPKCELLIR--IKSPVDGG--ARYPLDSKFGA--------NPEEVAHLLGAAQASGL 203 (419)
Q Consensus 136 a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lR--v~~~~~~g--~~~~~~sRfGi--------~~ee~~~~l~~~~~~~l 203 (419)
|++.|+++ -+.++.++.+.+.+.+.++.|= .|+-...| .....-.+-|+ ++|+..++.+.+++.++
T Consensus 71 AL~~g~t~--~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 71 ALAAGVTL--EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHCCCCH--HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
Confidence 78888752 4556666666655555444332 23321111 00000122232 34666666666666777
Q ss_pred eEE
Q 045356 204 AVI 206 (419)
Q Consensus 204 ~l~ 206 (419)
.+.
T Consensus 149 ~~I 151 (265)
T COG0159 149 DPI 151 (265)
T ss_pred cEE
Confidence 765
No 295
>PRK01362 putative translaldolase; Provisional
Probab=23.30 E-value=5.8e+02 Score=23.37 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhhcCCCCCcEEE----EeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCCcEE---Ec
Q 045356 34 GLLEFMESIILKRQELDEPFYV----LDLGVVISLYHQLISNLPMVHPYYAVKCNPE---PAILETLAALGSNFD---CA 103 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~v----~d~~~l~~ni~~~~~~~~~~~i~~avKan~~---~~v~~~l~~~G~g~~---Va 103 (419)
.+.++++++.+- .+.|+.+ .|.+.+.+..+++++..++ ..+|--.. ...++.|.+.|+..- |.
T Consensus 38 ~~~~~~~~i~~~---i~g~vs~qv~~~d~~~m~~~a~~l~~~~~~----i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vf 110 (214)
T PRK01362 38 DFEEVIKEICSI---VDGPVSAEVIALDAEGMIKEGRELAKIAPN----VVVKIPMTPEGLKAVKALSKEGIKTNVTLIF 110 (214)
T ss_pred CHHHHHHHHHHh---cCCCEEEEEeeCCHHHHHHHHHHHHHhCCC----EEEEeCCCHHHHHHHHHHHHCCCceEEeeec
Confidence 355777777644 2344432 4678888888888887775 34565554 567788888897544 88
Q ss_pred CHHHHHHHHHCCC
Q 045356 104 SPSEIQAVLALSV 116 (419)
Q Consensus 104 S~~E~~~a~~~G~ 116 (419)
|..-+..+.++|.
T Consensus 111 s~~Qa~~Aa~aGa 123 (214)
T PRK01362 111 SANQALLAAKAGA 123 (214)
T ss_pred CHHHHHHHHhcCC
Confidence 9999999999986
No 296
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=23.14 E-value=1.3e+02 Score=29.88 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCC-----CHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecC
Q 045356 97 GSNFDCASPSEIQAVLALSVSPDRIIYANACK-----PVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSP 171 (419)
Q Consensus 97 G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k-----~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~ 171 (419)
|+.+.|.+.+++..+.+.--.++-|+.+.+.. +...|..+-..|..+-+|.|.-++-++++.+|...+ +=+.++
T Consensus 56 GCPVCVtp~~~ID~ai~LA~~~~vil~TfGDm~RVPGs~~SL~~ara~GadVriVySp~dAl~iA~~nP~k~v-VF~avG 134 (355)
T PF01924_consen 56 GCPVCVTPQGDIDAAIELAKRPGVILATFGDMMRVPGSRGSLAEARAEGADVRIVYSPLDALKIAKENPDKEV-VFFAVG 134 (355)
T ss_dssp --TTTTS-HHHHHHHHHHHTT--EEEEE-TTGGG---TT--HHHHHHTT-EEEE-SSHHHHHHHHHH-TTSEE-EEEEEE
T ss_pred CCccEECcHHHHHHHHHHhCCCCeEEEeCcccccCCCCCCCHHHHHhCCCCEEEEeCHHHHHHHHHhCCCCce-EEEEeC
Confidence 78889999999999998865666666553211 345788887888775589999999999999887655 334443
No 297
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=23.12 E-value=1.9e+02 Score=27.56 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=16.1
Q ss_pred HHHHHHHHHc-CCCcceEEEeCCCCCCCCCHHHHHHHH
Q 045356 230 KTVFETAARL-GMTKMRVLDIGGGFACNPGFHEAASII 266 (419)
Q Consensus 230 ~~l~~~l~~~-g~~~~~~ldiGGG~~~~~~~~~~~~~i 266 (419)
.+.+..+.+. | +. ++||+|.|+|...+..+.+..+
T Consensus 57 ~RaVr~la~~~G-Ir-QFLDlGsGlPT~~nvHevAq~~ 92 (267)
T PF04672_consen 57 RRAVRYLAEEAG-IR-QFLDLGSGLPTAGNVHEVAQRV 92 (267)
T ss_dssp HHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH
T ss_pred HHHHHHHHHhcC-cc-eEEEcccCCCCCCCHhHHHHhh
Confidence 3344444444 7 33 7899999999865555555433
No 298
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.11 E-value=6.5e+02 Score=23.84 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCC-cEEEcC--HHHHH----HHHHCCCCCCcEEEcCCCCCHHHHHHHHHC
Q 045356 87 PAILETLAALGS-NFDCAS--PSEIQ----AVLALSVSPDRIIYANACKPVSHIKYAASV 139 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~VaS--~~E~~----~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (419)
...++.+.+.|+ |+-+.- .+|.. .+++.|+ +.|.+..|..+.+.++...+.
T Consensus 109 e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi--~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNI--ELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCC--CEEEEECCCCCHHHHHHHHHh
Confidence 345666677776 554432 34443 3445677 456677776666777766554
No 299
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=22.88 E-value=8.1e+02 Score=24.85 Aligned_cols=43 Identities=9% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 182 SKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
+| |.+.++..+.++.+++. ++.+. .++-+|--..+.+.+.+.+
T Consensus 264 ~k-~~~~~~~~~~i~~l~~~~~~i~i~-~~~I~G~PgET~e~~~~t~ 308 (430)
T TIGR01125 264 RR-PGSGEQQLDFIERLREKCPDAVLR-TTFIVGFPGETEEDFQELL 308 (430)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCeEe-EEEEEECCCCCHHHHHHHH
Confidence 45 67788888888888765 45443 3444565445555555444
No 300
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.73 E-value=7.6e+02 Score=24.49 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=65.4
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHc-CC-cEEEcCH---------HHHHHHHHCCCC
Q 045356 53 FYVLDLGVVISLYHQLISNLPMVHPYYAVKCNP----EPAILETLAAL-GS-NFDCASP---------SEIQAVLALSVS 117 (419)
Q Consensus 53 ~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~----~~~v~~~l~~~-G~-g~~VaS~---------~E~~~a~~~G~~ 117 (419)
=|++|.+.+.++++++.+ +.+--+-.++-.-. +|.+.+++.++ +. +.++.|+ .-++++.++|.+
T Consensus 138 dy~Vd~eyLl~w~~kVa~-~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLd 216 (414)
T COG2100 138 DYVVDPEYLLEWFEKVAR-FKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLD 216 (414)
T ss_pred ceEecHHHHHHHHHHHHh-hhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCc
Confidence 489999999999988765 33222223333332 45565555542 33 6665553 234455556763
Q ss_pred CCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 045356 118 PDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGA 197 (419)
Q Consensus 118 ~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~ 197 (419)
+|=++=...+++..+.. .|+.... .+.+..+++.....++-+=|.|- ==+|+..+|++++++.
T Consensus 217 --RiNlSv~aLDpk~Ak~L--~G~~dYd---v~kvle~aE~i~~a~idvlIaPv----------~lPG~ND~E~~~iIe~ 279 (414)
T COG2100 217 --RINLSVDALDPKLAKML--AGRKDYD---VKKVLEVAEYIANAGIDVLIAPV----------WLPGVNDDEMPKIIEW 279 (414)
T ss_pred --eEEeecccCCHHHHHHh--cCccccC---HHHHHHHHHHHHhCCCCEEEeee----------ecCCcChHHHHHHHHH
Confidence 44333222343333322 2332222 22333333322223333444442 2367788888888877
Q ss_pred HHh
Q 045356 198 AQA 200 (419)
Q Consensus 198 ~~~ 200 (419)
+.+
T Consensus 280 A~~ 282 (414)
T COG2100 280 ARE 282 (414)
T ss_pred HHH
Confidence 643
No 301
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.66 E-value=2.5e+02 Score=25.75 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=19.7
Q ss_pred eeccCCcHHHHHHHHHcCC--cEEEcCHHHHHHHHHCCC
Q 045356 80 AVKCNPEPAILETLAALGS--NFDCASPSEIQAVLALSV 116 (419)
Q Consensus 80 avKan~~~~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~ 116 (419)
.|=-|-++++++...+.|+ -=.|+|+.|+..|+++|.
T Consensus 89 iVsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~ 127 (211)
T COG0800 89 IVSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALELGA 127 (211)
T ss_pred EECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcCh
Confidence 3444445555555555554 334555555555555554
No 302
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.53 E-value=7.3e+02 Score=24.25 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=59.1
Q ss_pred CCCCCC---CHHHHHHHHHHHHhcCCeEEEEEEeeCCCC------CCHHHHH----HH-----HHHHHHHHHHHHHcCCC
Q 045356 181 DSKFGA---NPEEVAHLLGAAQASGLAVIGVAFHIGSEA------TNLDAFH----AA-----IAEAKTVFETAARLGMT 242 (419)
Q Consensus 181 ~sRfGi---~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~------~~~~~~~----~~-----~~~~~~l~~~l~~~g~~ 242 (419)
++.+|- +.+.+.++.++++..++++. +-||.+-.= ..+.+|. ++ .+.-+..+..+++.| .
T Consensus 93 gn~yggGnnD~~k~ieiakRAk~~GmKVl-~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eG-i 170 (403)
T COG3867 93 GNGYGGGNNDLKKAIEIAKRAKNLGMKVL-LDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEG-I 170 (403)
T ss_pred CCccCCCcchHHHHHHHHHHHHhcCcEEE-eeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 355654 44556667777777788765 678864321 1233443 12 233344566677788 7
Q ss_pred cceEEEeC----CCCC---CC-CCHHHHHHHHHHHHHhhCCCccCCCccEEEE
Q 045356 243 KMRVLDIG----GGFA---CN-PGFHEAASIIKDAIQTYFPNETAAGHLSVIS 287 (419)
Q Consensus 243 ~~~~ldiG----GG~~---~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~ 287 (419)
.+.++-+| |||- .+ .+|+.++..++++++..-.- .|.+++++
T Consensus 171 ~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev---~p~ikv~l 220 (403)
T COG3867 171 LPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV---SPTIKVAL 220 (403)
T ss_pred CccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc---CCCceEEE
Confidence 88888887 4544 12 27788777777665543221 23466655
No 303
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.51 E-value=1.8e+02 Score=25.03 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHCCCCCCcEEEcCCCCCHHHHHHH-HHCCCcEEEecCHH
Q 045356 108 IQAVLALSVSPDRIIYANACKPVSHIKYA-ASVGVNLTTFDSIQ 150 (419)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a-~~~gi~~i~vdS~~ 150 (419)
...++.+|| +.++.|...+++|+-.+ ++.++..+.++|++
T Consensus 33 a~~l~d~Gf---eVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~ 73 (143)
T COG2185 33 ARALADAGF---EVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD 73 (143)
T ss_pred HHHHHhCCc---eEEecCCcCCHHHHHHHHHhcCCCEEEEEecc
Confidence 455667787 36777777777766444 57777766666643
No 304
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=22.23 E-value=4.2e+02 Score=24.40 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcC-----CeEEEEEEeeCCCCCC
Q 045356 188 PEEVAHLLGAAQASG-----LAVIGVAFHIGSEATN 218 (419)
Q Consensus 188 ~ee~~~~l~~~~~~~-----l~l~Glh~H~gs~~~~ 218 (419)
.+++.++++.+++.+ -. .|+|+|++....+
T Consensus 91 ~~~i~~~~~~lr~~~~~~~~~s-cg~HVHv~~~~~~ 125 (252)
T PF12224_consen 91 LEEIDKVLEALRRNGAIGTNDS-CGFHVHVGPEPPS 125 (252)
T ss_pred HHHHHHHHHHHHHcCCccccCC-eeEEEEECCCCCC
Confidence 566777777765532 23 8999999876443
No 305
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.21 E-value=1.7e+02 Score=26.59 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEEEeH--HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCH---HH
Q 045356 33 GGLLEFMESIILKRQELDEPFYVLDL--GVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASP---SE 107 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~tP~~v~d~--~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~---~E 107 (419)
+...++.+.+++ -+-+.+++-. ..-.+-++++++.+|+.. --.=+=-+.+-++...+.|+.|-|+-. +=
T Consensus 20 ~~a~~~~~al~~----gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~--vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v 93 (196)
T PF01081_consen 20 EDAVPIAEALIE----GGIRAIEITLRTPNALEAIEALRKEFPDLL--VGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEV 93 (196)
T ss_dssp GGHHHHHHHHHH----TT--EEEEETTSTTHHHHHHHHHHHHTTSE--EEEES--SHHHHHHHHHHT-SEEEESS--HHH
T ss_pred HHHHHHHHHHHH----CCCCEEEEecCCccHHHHHHHHHHHCCCCe--eEEEeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 344555665553 3445555433 233455666666666532 223333356667777777777776532 22
Q ss_pred HHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEE---ecC---HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 045356 108 IQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTT---FDS---IQELDKIRKWHPKCELLIRIKSPVDGGARYPLD 181 (419)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~---vdS---~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~ 181 (419)
++.+++.|+ .+.....++.|+..|.++|...+= .+. ...++.|..-.|. +++.+.
T Consensus 94 ~~~~~~~~i-----~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~----~~~~pt---------- 154 (196)
T PF01081_consen 94 IEYAREYGI-----PYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPD----LPFMPT---------- 154 (196)
T ss_dssp HHHHHHHTS-----EEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-----EEEEB----------
T ss_pred HHHHHHcCC-----cccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCC----CeEEEc----------
Confidence 333344433 333335677777777777765431 232 4455555544444 355542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEE
Q 045356 182 SKFGANPEEVAHLLGAAQASGLAVIGV 208 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~~~l~l~Gl 208 (419)
-|++++.+.+.++ .+-...|+
T Consensus 155 --GGV~~~N~~~~l~----ag~~~vg~ 175 (196)
T PF01081_consen 155 --GGVNPDNLAEYLK----AGAVAVGG 175 (196)
T ss_dssp --SS--TTTHHHHHT----STTBSEEE
T ss_pred --CCCCHHHHHHHHh----CCCEEEEE
Confidence 2566666655543 34444454
No 306
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.20 E-value=8.7e+02 Score=24.95 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHC--CCCCCcEEEcCCCCC------HHHHHHHHHCCCcEEEec----CHHHHHHHHhHCCCCeEEEEEecCC
Q 045356 105 PSEIQAVLAL--SVSPDRIIYANACKP------VSHIKYAASVGVNLTTFD----SIQELDKIRKWHPKCELLIRIKSPV 172 (419)
Q Consensus 105 ~~E~~~a~~~--G~~~~~Ii~~gp~k~------~~~l~~a~~~gi~~i~vd----S~~el~~i~~~~~~~~v~lRv~~~~ 172 (419)
.+|++.+.+. |+ ..|.|...... .+-++...+.|+....-- +.+.++.+.+.+-. +|..+.
T Consensus 233 ~~Ei~~~~~~~~~~--~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~-----~v~iGi 305 (472)
T TIGR03471 233 IEEVKYALENFPEV--REFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLR-----LLLVGY 305 (472)
T ss_pred HHHHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCC-----EEEEcC
Q ss_pred CCCCC--CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 045356 173 DGGAR--YPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTV 232 (419)
Q Consensus 173 ~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l 232 (419)
++++. ....+| |.+.++..+.++.+++.|+. ....+-+|--..+.+.+.+.++.+.++
T Consensus 306 ES~s~~~L~~~~K-~~~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 306 ESGDQQILKNIKK-GLTVEIARRFTRDCHKLGIK-VHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHHHHHHHHHHHhc
No 307
>PRK08508 biotin synthase; Provisional
Probab=22.13 E-value=6.8e+02 Score=23.73 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=10.2
Q ss_pred EeHHHHHHHHHHHHH
Q 045356 56 LDLGVVISLYHQLIS 70 (419)
Q Consensus 56 ~d~~~l~~ni~~~~~ 70 (419)
++++.|.+.+++.++
T Consensus 40 ~s~eeI~~~a~~a~~ 54 (279)
T PRK08508 40 KDIEQIVQEAKMAKA 54 (279)
T ss_pred CCHHHHHHHHHHHHH
Confidence 577777777766555
No 308
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.97 E-value=9.2e+02 Score=25.15 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHH
Q 045356 187 NPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEA 229 (419)
Q Consensus 187 ~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~ 229 (419)
+++-+.++++.+.+.+..-..|.=-.| ...|..+.+.++.+
T Consensus 141 ~~~~l~~~~~~~~~~Ga~~i~l~DTvG--~~~P~~~~~lv~~l 181 (488)
T PRK09389 141 DLDFLKELYKAGIEAGADRICFCDTVG--ILTPEKTYELFKRL 181 (488)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCC--CcCHHHHHHHHHHH
Confidence 567777888877776766655543333 34566665555443
No 309
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=21.92 E-value=7.3e+02 Score=25.05 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-cEEEcC------------HHHHHHHHHC-CCCCCcEEEcCCCC
Q 045356 63 SLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS-NFDCAS------------PSEIQAVLAL-SVSPDRIIYANACK 128 (419)
Q Consensus 63 ~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~-g~~VaS------------~~E~~~a~~~-G~~~~~Ii~~gp~k 128 (419)
++++.+++..+ +-..+|---+..-++.+.+.|+ ++.|+. ..-+..++++ +- .-.|+..|.+.
T Consensus 243 ~~i~~lr~~~~---~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~-~~~vi~dGGIr 318 (383)
T cd03332 243 EDLAFLREWTD---LPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGD-RLTVLFDSGVR 318 (383)
T ss_pred HHHHHHHHhcC---CCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCcC
Confidence 45566666542 2255777777777888888887 666542 2333333332 21 13577778888
Q ss_pred CHHHHHHHHHCCCcEEEec
Q 045356 129 PVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 129 ~~~~l~~a~~~gi~~i~vd 147 (419)
+..++-.|+..|...+.+.
T Consensus 319 ~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 319 TGADIMKALALGAKAVLIG 337 (383)
T ss_pred cHHHHHHHHHcCCCEEEEc
Confidence 8888888888887654443
No 310
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.90 E-value=1.6e+02 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=0.0
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
++++|.|.+|+..+.++|. +++..++ .++++++.+++
T Consensus 185 Igvev~s~eea~~A~~~ga---DyI~ld~-~~~e~l~~~~~ 221 (268)
T cd01572 185 IEVEVETLEQLKEALEAGA---DIIMLDN-MSPEELREAVA 221 (268)
T ss_pred EEEEECCHHHHHHHHHcCC---CEEEECC-cCHHHHHHHHH
No 311
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=21.89 E-value=4.3e+02 Score=27.06 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=10.5
Q ss_pred cCCCcceEEEeCCCCCC
Q 045356 239 LGMTKMRVLDIGGGFAC 255 (419)
Q Consensus 239 ~g~~~~~~ldiGGG~~~ 255 (419)
.+ .++..|.+|||.|+
T Consensus 98 ~~-~~~~siy~GGGTPs 113 (433)
T PRK08629 98 LG-YDFESMYVGGGTTT 113 (433)
T ss_pred cC-CceEEEEECCCccc
Confidence 45 45666777777766
No 312
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.84 E-value=4.7e+02 Score=24.64 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHHCCCCCCcEEEcC----CCC-CHHHHHHHHHC---CCcEE---EecCHHHH
Q 045356 86 EPAILETLAALGS--NFDCASPSEIQAVLALSVSPDRIIYAN----ACK-PVSHIKYAASV---GVNLT---TFDSIQEL 152 (419)
Q Consensus 86 ~~~v~~~l~~~G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~g----p~k-~~~~l~~a~~~---gi~~i---~vdS~~el 152 (419)
...+++...+.|. =+||.+.+|++.+.++|. +.|-+++ ... +.+....+++. ++..+ -+.+.+++
T Consensus 149 l~~li~~a~~lGl~~lvevh~~~E~~~A~~~ga--diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~ 226 (260)
T PRK00278 149 LKELLDYAHSLGLDVLVEVHDEEELERALKLGA--PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDL 226 (260)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC--CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHH
Confidence 3456666667776 578999999999999986 4444553 111 22333333332 22223 34567788
Q ss_pred HHHHhHC
Q 045356 153 DKIRKWH 159 (419)
Q Consensus 153 ~~i~~~~ 159 (419)
..+.+.+
T Consensus 227 ~~~~~~G 233 (260)
T PRK00278 227 KRLAKAG 233 (260)
T ss_pred HHHHHcC
Confidence 8877664
No 313
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.78 E-value=6.2e+02 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhhcCCCCCcEEE
Q 045356 34 GLLEFMESIILKRQELDEPFYV 55 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~tP~~v 55 (419)
...+.++++.+ ..+.|+.+
T Consensus 63 ~~~~~i~~i~~---~~~~~l~v 81 (241)
T PRK13585 63 KNAEAIEKIIE---AVGVPVQL 81 (241)
T ss_pred ccHHHHHHHHH---HcCCcEEE
Confidence 33455666553 35667776
No 314
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.75 E-value=5.9e+02 Score=22.88 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCC-cEEEc--------CHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEec----CHHHHH
Q 045356 87 PAILETLAALGS-NFDCA--------SPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFD----SIQELD 153 (419)
Q Consensus 87 ~~v~~~l~~~G~-g~~Va--------S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vd----S~~el~ 153 (419)
..+++...+.|+ ++-|. +.+.++.+++. +. -.|++.+...++++++.+.+.|+..+.+. +.++++
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~-iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~ 111 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VS-LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLK 111 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cC-CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 478888889998 88885 88888888876 22 24677666677789999999998755432 235555
Q ss_pred HHHhHC
Q 045356 154 KIRKWH 159 (419)
Q Consensus 154 ~i~~~~ 159 (419)
.+.+..
T Consensus 112 ~~~~~~ 117 (217)
T cd00331 112 ELYELA 117 (217)
T ss_pred HHHHHH
Confidence 555443
No 315
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=5.6e+02 Score=25.26 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcC------CCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCC
Q 045356 88 AILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYAN------ACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPK 161 (419)
Q Consensus 88 ~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~g------p~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~ 161 (419)
+-+++++-=|+.++|....++..+.++--.++.|+.+- |+ +...|-.+-..|.+.=.|.|..+..+|++.+|.
T Consensus 54 eNi~~i~GPGCPVCVtp~~~id~aiela~~~~~i~~TfGDm~RVPg-s~~SL~~~ka~G~DVRiVYS~~dal~iA~enpd 132 (364)
T COG0409 54 ENVEFIHGPGCPVCVTPMGRIDTAIELASSKDVIFCTFGDMMRVPG-SPGSLLDAKAEGADVRIVYSPMDALKIAKENPD 132 (364)
T ss_pred cceEEecCCCCCeEeeEHHHHHHHHHHhCCCCcEEEeccceeecCC-CCcchhhhhcCCccEEEEecHHHHHHHHhhCCC
Confidence 33444444489999999999999999854444444331 22 234555555667553379999999999998877
Q ss_pred CeEEEEEecCCC
Q 045356 162 CELLIRIKSPVD 173 (419)
Q Consensus 162 ~~v~lRv~~~~~ 173 (419)
.+| +-+.++++
T Consensus 133 k~V-VffaiGFE 143 (364)
T COG0409 133 KKV-VFFAIGFE 143 (364)
T ss_pred Cce-EEEeCccc
Confidence 654 44555544
No 316
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=21.67 E-value=7.3e+02 Score=23.91 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHCCC-CCCcEEEcCCCC---CHHHHHHHHHCCCcEEEecCHHH-----HHH-HHhHC-CCCeEEEEEecCCCCC
Q 045356 107 EIQAVLALSV-SPDRIIYANACK---PVSHIKYAASVGVNLTTFDSIQE-----LDK-IRKWH-PKCELLIRIKSPVDGG 175 (419)
Q Consensus 107 E~~~a~~~G~-~~~~Ii~~gp~k---~~~~l~~a~~~gi~~i~vdS~~e-----l~~-i~~~~-~~~~v~lRv~~~~~~g 175 (419)
-+..+++.+. .+.+++..|.-. +.++.+++-++|+..+..+.+.+ +.. +.... ....+.|-++++.-..
T Consensus 165 ~~~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDp 244 (307)
T TIGR01227 165 PFRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDA 244 (307)
T ss_pred HHHHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccCh
Confidence 3555565543 334677765432 45778888889986555554433 222 22221 2235666666653110
Q ss_pred C---CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q 045356 176 A---RYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFH 211 (419)
Q Consensus 176 ~---~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H 211 (419)
+ ...+....|++..|+.++++.+... -++.|+.+-
T Consensus 245 s~aPgtg~p~pgGLt~~e~~~il~~l~~~-~~vvg~Dvv 282 (307)
T TIGR01227 245 AHAPGVSAPAPGGLYPDELLELVKRIAAS-DKVRGAEIA 282 (307)
T ss_pred hhCCCCCCCCCCCCCHHHHHHHHHHHhcC-CCEEEEEEE
Confidence 0 1223467899999999999877433 356776665
No 317
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=21.57 E-value=3.7e+02 Score=24.05 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=18.6
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEcCC
Q 045356 102 CASPSEIQAVLALSVSPDRIIYANA 126 (419)
Q Consensus 102 VaS~~E~~~a~~~G~~~~~Ii~~gp 126 (419)
-.+..|+..+.+.+++.--|++++.
T Consensus 88 ~m~~~eL~Ta~~~~lpviivV~NN~ 112 (202)
T cd02006 88 QFMIEELAVGAQHRIPYIHVLVNNA 112 (202)
T ss_pred hccHHHHHHHHHhCCCeEEEEEeCc
Confidence 3568999999999987665566544
No 318
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.37 E-value=7.3e+02 Score=23.77 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 045356 186 ANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAE 228 (419)
Q Consensus 186 i~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~ 228 (419)
.+++.+.++++.+.+.|.....|.=..|. ..|....+.++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~--~~P~~v~~lv~~ 192 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGV--GTPGQVRAVLEA 192 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCc--cCHHHHHHHHHH
Confidence 46777888888887778777666555443 456555444433
No 319
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.32 E-value=8.3e+02 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=29.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeE
Q 045356 159 HPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASG-LAV 205 (419)
Q Consensus 159 ~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~-l~l 205 (419)
.+...|++|+++... ...-|.+.++..++++.+++.+ +.+
T Consensus 214 g~~~~vg~Rls~~d~-------~~~~g~~~~e~~~la~~L~~~G~~d~ 254 (363)
T COG1902 214 GADFPVGVRLSPDDF-------FDGGGLTIEEAVELAKALEEAGLVDY 254 (363)
T ss_pred CCCceEEEEECcccc-------CCCCCCCHHHHHHHHHHHHhcCCccE
Confidence 344569999998532 1334899999999999998887 455
No 320
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.27 E-value=6.5e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=30.0
Q ss_pred CcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHH
Q 045356 98 SNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAAS 138 (419)
Q Consensus 98 ~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (419)
+-++|.|.+|+..+.++|. +.|.+-+ .++++++.+++
T Consensus 200 IeVEv~tleea~~a~~aga--DiImLDn--mspe~l~~av~ 236 (290)
T PRK06559 200 VEVEVESLAAAEEAAAAGA--DIIMLDN--MSLEQIEQAIT 236 (290)
T ss_pred EEEECCCHHHHHHHHHcCC--CEEEECC--CCHHHHHHHHH
Confidence 4789999999999999996 4555544 57899999976
No 321
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.08 E-value=5e+02 Score=25.01 Aligned_cols=82 Identities=9% Similarity=0.124 Sum_probs=0.0
Q ss_pred CHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHH
Q 045356 148 SIQELDKIRKWHPKCELLIRIKSPVDGGARYPLD--SKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAA 225 (419)
Q Consensus 148 S~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~--sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~ 225 (419)
+.+.++.+.++ .+..+-++|.++..++...... +| |.+.++..+.++.+++.++. ...|+-+|-...+.+.+.+.
T Consensus 122 ~~e~l~~L~~l-~~~G~~~~i~lGlQS~~d~~L~~i~R-g~t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t 198 (302)
T TIGR01212 122 PDEVLDLLAEY-VERGYEVWVELGLQTAHDKTLKKINR-GHDFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMET 198 (302)
T ss_pred CHHHHHHHHHh-hhCCceEEEEEccCcCCHHHHHHHcC-cChHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHH
Q ss_pred HHHHHHH
Q 045356 226 IAEAKTV 232 (419)
Q Consensus 226 ~~~~~~l 232 (419)
++.+.++
T Consensus 199 ~~~l~~l 205 (302)
T TIGR01212 199 AKIVSLL 205 (302)
T ss_pred HHHHHhc
No 322
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.93 E-value=9.1e+02 Score=24.70 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=35.3
Q ss_pred EEEEEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 164 LLIRIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 164 v~lRv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
+.-+++++..+|+. ....+| |.+.++..++++.+++. ++.+ +..+-+|--..+.+.+.+.+
T Consensus 264 ~~~~l~igiQSgsd~vLk~m~R-~~t~e~~~~~i~~lr~~~p~i~i-~~d~IvGfPgET~edf~~tl 328 (448)
T PRK14333 264 VCEHFHIPFQSGDNEILKAMAR-GYTHEKYRRIIDKIREYMPDASI-SADAIVGFPGETEAQFENTL 328 (448)
T ss_pred ccccccCCCccCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCcEE-EeeEEEECCCCCHHHHHHHH
Confidence 34566776655421 122244 56888999999888765 5554 34455565445555554443
No 323
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.91 E-value=7.3e+02 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=34.9
Q ss_pred CcEEEcCCCCCHHHHHHHHHCCCcEEEecC---------HHHHHHHHhHCCCCeEEEEEec
Q 045356 119 DRIIYANACKPVSHIKYAASVGVNLTTFDS---------IQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 119 ~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS---------~~el~~i~~~~~~~~v~lRv~~ 170 (419)
-.|-+.|...+ ++++.+++.|+..+++.| .+.++.+.+.....++.+-|+.
T Consensus 84 ~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 84 GGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 46788888764 888888999888777765 5566666665533455555554
No 324
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=20.91 E-value=4.6e+02 Score=24.56 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=54.1
Q ss_pred eeccCCcHHHHHHHHHcCCcEE-------EcCHHHHHHHHHC----CCCCCcEEEcCCCCCHHHHHHHHHCCCc---EEE
Q 045356 80 AVKCNPEPAILETLAALGSNFD-------CASPSEIQAVLAL----SVSPDRIIYANACKPVSHIKYAASVGVN---LTT 145 (419)
Q Consensus 80 avKan~~~~v~~~l~~~G~g~~-------VaS~~E~~~a~~~----G~~~~~Ii~~gp~k~~~~l~~a~~~gi~---~i~ 145 (419)
..-.-+++.+++.+...|..+- +.+..++..+..+ |. ..++=. |..++..++.+++.|+. +..
T Consensus 16 ~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~--~~~VRv-~~~~~~~i~~~Ld~Ga~gIivP~ 92 (249)
T TIGR02311 16 LWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPS--SPVVRP-AIGDPVLIKQLLDIGAQTLLVPM 92 (249)
T ss_pred EEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCC--CcEEEC-CCCCHHHHHHHhCCCCCEEEecC
Confidence 3344567888998888875332 2355555554443 43 334433 34567899999988764 238
Q ss_pred ecCHHHHHHHHhHCCCCeEEEE
Q 045356 146 FDSIQELDKIRKWHPKCELLIR 167 (419)
Q Consensus 146 vdS~~el~~i~~~~~~~~v~lR 167 (419)
|+|.+|++.+.+..+-.+.+.|
T Consensus 93 v~s~e~a~~~v~~~~y~P~G~R 114 (249)
T TIGR02311 93 IETAEQAEAAVAATRYPPMGIR 114 (249)
T ss_pred cCCHHHHHHHHHHcCCCCCCcC
Confidence 8999999999887653333344
No 325
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=20.88 E-value=5e+02 Score=22.34 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHCCCCCCcEEEcCCCC----------------------CHHHHHHHHHCCCcEEEecCHHHHHHHHhHC-
Q 045356 103 ASPSEIQAVLALSVSPDRIIYANACK----------------------PVSHIKYAASVGVNLTTFDSIQELDKIRKWH- 159 (419)
Q Consensus 103 aS~~E~~~a~~~G~~~~~Ii~~gp~k----------------------~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~- 159 (419)
.+.+|+..+.+.+.+.--|++++... ..+..+.|...|+....+++.+|++...+.+
T Consensus 80 ~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~ 159 (172)
T cd02004 80 FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRAL 159 (172)
T ss_pred CCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH
Confidence 36899999999888654555554321 1112233445666556777877777544431
Q ss_pred -CCCeEEEEEe
Q 045356 160 -PKCELLIRIK 169 (419)
Q Consensus 160 -~~~~v~lRv~ 169 (419)
.+....|.+.
T Consensus 160 ~~~~p~liev~ 170 (172)
T cd02004 160 ASGKPALINVI 170 (172)
T ss_pred HcCCCEEEEEE
Confidence 2234455544
No 326
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=20.86 E-value=8.8e+02 Score=24.53 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=29.2
Q ss_pred cEEEEeHHHHHHH----HHHHHHhCCCCceeeeeccCCcHHH-HHHHHHcCC
Q 045356 52 PFYVLDLGVVISL----YHQLISNLPMVHPYYAVKCNPEPAI-LETLAALGS 98 (419)
Q Consensus 52 P~~v~d~~~l~~n----i~~~~~~~~~~~i~~avKan~~~~v-~~~l~~~G~ 98 (419)
.++.+-..-+.+. ++++++..++..++..+|.+--+.. ++.+.+.|+
T Consensus 200 ~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGA 251 (391)
T PRK13307 200 IIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATA 251 (391)
T ss_pred eEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCC
Confidence 3555666555443 6666665566667777777765544 666666665
No 327
>PRK08444 hypothetical protein; Provisional
Probab=20.67 E-value=4.5e+02 Score=26.15 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=48.7
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHc--CCcEEEcCHHHHHHHHH-CCCCCCcEEEc
Q 045356 54 YVLDLGVVISLYHQLISNLPMVHPYYAVKCNP------EPAILETLAAL--GSNFDCASPSEIQAVLA-LSVSPDRIIYA 124 (419)
Q Consensus 54 ~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~------~~~v~~~l~~~--G~g~~VaS~~E~~~a~~-~G~~~~~Ii~~ 124 (419)
|.++.+.|.+.+++.++. .-.+++...=-++ ...+++.+.+. ++.+.+-|+.|+..+.+ .|.
T Consensus 78 y~ls~eeI~~~a~~a~~~-G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~-------- 148 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKR-GIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGK-------- 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHC-CCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCC--------
Confidence 678999999999887663 2234443332222 35677777764 56888888888877663 332
Q ss_pred CCCCCHHHHHHHHHCCCc
Q 045356 125 NACKPVSHIKYAASVGVN 142 (419)
Q Consensus 125 gp~k~~~~l~~a~~~gi~ 142 (419)
-..+.++...+.|+.
T Consensus 149 ---~~~e~l~~LkeAGl~ 163 (353)
T PRK08444 149 ---SYEEVLEDMLEYGVD 163 (353)
T ss_pred ---CHHHHHHHHHHhCcc
Confidence 124666666677764
No 328
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.65 E-value=7.2e+02 Score=23.44 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=4.6
Q ss_pred HHHHHHHcCC
Q 045356 89 ILETLAALGS 98 (419)
Q Consensus 89 v~~~l~~~G~ 98 (419)
+++.+.+.|+
T Consensus 109 f~~~~~~aGv 118 (258)
T PRK13111 109 FAADAAEAGV 118 (258)
T ss_pred HHHHHHHcCC
Confidence 4444444444
No 329
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=20.45 E-value=7.2e+02 Score=24.24 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=27.6
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHH
Q 045356 102 CASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKI 155 (419)
Q Consensus 102 VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i 155 (419)
..+...++.+++.|++ -..|+- .++++++.+++.|+.-+.-|..+.+..+
T Consensus 232 ~l~~~~v~~~~~~G~~--v~vWTV--Nd~~~~~~l~~~GVDgIiTD~P~~l~~~ 281 (315)
T cd08609 232 DLSALEIKELRKDNVS--VNLWVV--NEPWLFSLLWCSGVSSVTTNACQLLKDM 281 (315)
T ss_pred cCCHHHHHHHHHCCCE--EEEECC--CCHHHHHHHHhcCCCEEEcCCHHHHHHh
Confidence 3455566666666652 233432 3456666666666665556665555544
No 330
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.45 E-value=7e+02 Score=23.21 Aligned_cols=51 Identities=6% Similarity=0.145 Sum_probs=34.3
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCcEEEe-----cCHHHHHHHHhHCCCCeEEEEEec
Q 045356 120 RIIYANACKPVSHIKYAASVGVNLTTF-----DSIQELDKIRKWHPKCELLIRIKS 170 (419)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gi~~i~v-----dS~~el~~i~~~~~~~~v~lRv~~ 170 (419)
++.+.|...+.++++.++..|+..+.+ .+.+.++++.+..+..++.+-++.
T Consensus 76 pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~ 131 (254)
T TIGR00735 76 PLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDA 131 (254)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEe
Confidence 577788888888888888877664444 445566666666654556666654
No 331
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=20.44 E-value=9.8e+02 Score=24.93 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHHHhHCCCCeEEEEEecCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 149 IQELDKIRKWHPKCELLIRIKSPVDGGA--RYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 149 ~~el~~i~~~~~~~~v~lRv~~~~~~g~--~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
.+.++.+.+.+-. ||+++..+.. ....-+| +.+.+++.+.++.+++.++.-..+.+-+|-...+.+.+.+.+
T Consensus 269 ~e~L~~Lk~~Gv~-----RISIGvQS~~d~vLk~igR-~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl 342 (488)
T PRK08207 269 EEKLEVLKKYGVD-----RISINPQTMNDETLKAIGR-HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTL 342 (488)
T ss_pred HHHHHHHHhcCCC-----eEEEcCCcCCHHHHHHhCC-CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 4555555554321 5665544321 0111134 357888888898888888865666667776555666665544
Q ss_pred HH
Q 045356 227 AE 228 (419)
Q Consensus 227 ~~ 228 (419)
+.
T Consensus 343 ~~ 344 (488)
T PRK08207 343 EE 344 (488)
T ss_pred HH
Confidence 43
No 332
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.28 E-value=7.8e+02 Score=24.38 Aligned_cols=137 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHcCC---cEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEE-----EecCHHHHHHHHhHCCC
Q 045356 90 LETLAALGS---NFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLT-----TFDSIQELDKIRKWHPK 161 (419)
Q Consensus 90 ~~~l~~~G~---g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i-----~vdS~~el~~i~~~~~~ 161 (419)
++.|.++|+ .+.|-+.++++.+...--..+-=++.--..+....-.+++.|+.-+ ++.+.+.++.+.+.+++
T Consensus 40 I~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~ 119 (346)
T TIGR00612 40 IRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARD 119 (346)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHH
Q ss_pred CeEEEEEecCCCCCCCCCCC--CCCC-CCH----HHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHH
Q 045356 162 CELLIRIKSPVDGGARYPLD--SKFG-ANP----EEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEA 229 (419)
Q Consensus 162 ~~v~lRv~~~~~~g~~~~~~--sRfG-i~~----ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~ 229 (419)
.++.+||=.+.++ .+.. .|+| ..+ +.+.+-++.+++.+..=.=++.-...-....++|+...+++
T Consensus 120 ~~ipIRIGVN~GS---L~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~ 191 (346)
T TIGR00612 120 HGKAMRIGVNHGS---LERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERS 191 (346)
T ss_pred CCCCEEEecCCCC---CcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhC
No 333
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=20.24 E-value=2.2e+02 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHh------cCCeEEEE-EEeeCCC
Q 045356 182 SKFGANPEEVAHLLGAAQA------SGLAVIGV-AFHIGSE 215 (419)
Q Consensus 182 sRfGi~~ee~~~~l~~~~~------~~l~l~Gl-h~H~gs~ 215 (419)
.||-+++++...+.+.++. .++.+.|+ |+|.++.
T Consensus 62 ~r~eidPee~~~a~~ea~~~~~~~~rgl~vVGwYHSHP~~~ 102 (244)
T cd08068 62 DRVEISPEQLSAASTEAERLTEETGRPMRVVGWYHSHPHIT 102 (244)
T ss_pred ceEEeCHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCCC
Confidence 6899999987776666655 68999997 7776554
No 334
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.24 E-value=1e+03 Score=24.92 Aligned_cols=114 Identities=13% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCCCCcEEEcCCCC--------CHHHHHHH---H-H-CCCcEEEec-------CHHHHHHHHhHCCCCeEE
Q 045356 106 SEIQAVLALSVSPDRIIYANACK--------PVSHIKYA---A-S-VGVNLTTFD-------SIQELDKIRKWHPKCELL 165 (419)
Q Consensus 106 ~E~~~a~~~G~~~~~Ii~~gp~k--------~~~~l~~a---~-~-~gi~~i~vd-------S~~el~~i~~~~~~~~v~ 165 (419)
+|++.+.+.|+ ..|.|.+... ....+..+ + + .|+..+-+. +.+.++.+.+..+ +.
T Consensus 193 ~Ei~~l~~~g~--~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~---~~ 267 (502)
T PRK14326 193 AEVQALVDEGV--LEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPN---VC 267 (502)
T ss_pred HHHHHHHHCCC--ceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCC---cC
Confidence 57777777786 4676655421 22222222 2 1 133222222 2344444444321 22
Q ss_pred EEEecCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeeCCCCCCHHHHHHHH
Q 045356 166 IRIKSPVDGGAR--YPLDSKFGANPEEVAHLLGAAQAS--GLAVIGVAFHIGSEATNLDAFHAAI 226 (419)
Q Consensus 166 lRv~~~~~~g~~--~~~~sRfGi~~ee~~~~l~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~~ 226 (419)
..++++..+++. ....+| |.+.++..++++.+++. ++.+. .++-+|--..+.+.+.+.+
T Consensus 268 ~~l~lglQSgsd~iLk~m~R-~~t~~~~~~~v~~lr~~~~~i~i~-~~~IvGfPgET~edf~~Tl 330 (502)
T PRK14326 268 PQLHMPLQSGSDRVLRAMRR-SYRSERFLGILEKVRAAMPDAAIT-TDIIVGFPGETEEDFQATL 330 (502)
T ss_pred CcEEeccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCeEE-EEEEEECCCCCHHHHHHHH
Confidence 355555544321 112345 57888999999888763 55544 4566676555556555443
No 335
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.12 E-value=4.6e+02 Score=26.06 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHH
Q 045356 185 GANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIA 227 (419)
Q Consensus 185 Gi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~ 227 (419)
+.+.+++.+.++.+++.++....+++.+|-...+.+.+.+.++
T Consensus 132 ~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~ 174 (377)
T PRK08599 132 THNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLA 174 (377)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHH
Confidence 4567888888888888887656667777765556666655443
No 336
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=20.10 E-value=7.3e+02 Score=23.31 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHHc-CC--cEEEcCHHHHHHHHHCCCCCCcEEEcCCCC-CHHHHHHHHHCCCcEEEec
Q 045356 87 PAILETLAAL-GS--NFDCASPSEIQAVLALSVSPDRIIYANACK-PVSHIKYAASVGVNLTTFD 147 (419)
Q Consensus 87 ~~v~~~l~~~-G~--g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k-~~~~l~~a~~~gi~~i~vd 147 (419)
.++++.+.+. ++ .+|..+++.++.++++|. .|+-..... .++-++.+.++|+.++...
T Consensus 64 ~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~---~iINsis~~~~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 64 VPVIKALRDQPDVPISVDTYRAEVARAALEAGA---DIINDVSGGQDPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCchhHHHHHHcCCcEEEEe
Confidence 3556666654 64 889999999999999985 355543322 4556677777887654443
No 337
>PRK08508 biotin synthase; Provisional
Probab=20.09 E-value=7.5e+02 Score=23.44 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=28.2
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC
Q 045356 57 DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGS 98 (419)
Q Consensus 57 d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~ 98 (419)
+.+.+.+-++.+++..|++.+..+. ...+.+.++.|.++|+
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i~~s~-G~~~~e~l~~Lk~aGl 113 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHLIACN-GTASVEQLKELKKAGI 113 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEEEecC-CCCCHHHHHHHHHcCC
Confidence 4567788888888877765543221 2226788888988886
Done!