Query 045357
Match_columns 244
No_of_seqs 137 out of 295
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.3E-45 2.9E-50 291.7 8.3 101 2-107 1-101 (101)
2 PF04706 Dickkopf_N: Dickkopf 19.6 52 0.0011 23.8 0.8 15 2-16 22-36 (52)
3 PF08158 NUC130_3NT: NUC130/3N 19.5 85 0.0018 22.6 1.9 22 48-69 20-45 (52)
4 PF14653 IGFL: Insulin growth 17.1 69 0.0015 25.8 1.0 15 10-24 42-56 (89)
5 PF15300 INT_SG_DDX_CT_C: INTS 16.1 89 0.0019 23.7 1.4 27 46-72 23-51 (65)
6 PF03242 LEA_3: Late embryogen 15.2 63 0.0014 25.9 0.4 20 68-87 58-77 (93)
7 PF05965 FYRC: F/Y rich C-term 13.6 1.3E+02 0.0028 22.5 1.7 22 39-60 53-76 (86)
8 PF00172 Zn_clus: Fungal Zn(2) 10.9 97 0.0021 20.3 0.3 14 2-15 2-15 (40)
9 PF14623 Vint: Hint-domain 10.7 72 0.0016 28.0 -0.5 38 39-82 122-159 (162)
10 PF13776 DUF4172: Domain of un 9.5 4.9E+02 0.011 20.3 3.7 47 21-71 9-56 (82)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.3e-45 Score=291.70 Aligned_cols=101 Identities=27% Similarity=0.544 Sum_probs=96.2
Q ss_pred CcccchhcccCCCCCCccccCCCCcCCChHHHHHHHHHHHHhccccHHHHHhcCCCCChHHHHHHHHHHhhccccCCCCC
Q 045357 2 SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISG 81 (244)
Q Consensus 2 ~CAACK~lRRrC~~dCilAPYFP~~~s~e~q~fa~~FvhKvFG~SNV~kmL~~lp~~~R~~A~~SLiYEA~aR~rDPVyG 81 (244)
+|||||||||+|+++|+|||||| ++++++|. +||||||++||+|||+++|+++|+++|+||+|||++|++|||||
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP---~~~~~~F~--~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G 75 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFP---ADQPQRFA--NVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG 75 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCC---hhHHHHHH--HHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence 79999999999999999999996 67778776 48999999999999999999999999999999999999999999
Q ss_pred chHHhhhchhHHHHHHHHHHHcCCCc
Q 045357 82 SVGLLWSGKWEQCQAAVDAVLKGKTI 107 (244)
Q Consensus 82 cvG~I~~Lq~qi~qaavE~vL~g~~I 107 (244)
|+|+||.|+|||+++++|+++.+++|
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999988876
No 2
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=19.65 E-value=52 Score=23.79 Aligned_cols=15 Identities=47% Similarity=0.902 Sum_probs=13.3
Q ss_pred CcccchhcccCCCCC
Q 045357 2 SCNGCRILRKGCGDD 16 (244)
Q Consensus 2 ~CAACK~lRRrC~~d 16 (244)
.|..||-+|++|..|
T Consensus 22 ~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 22 KCLPCRKRRKRCTRD 36 (52)
T ss_pred cChhhccCCCCCCCC
Confidence 489999999999976
No 3
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=19.46 E-value=85 Score=22.60 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=17.2
Q ss_pred HHHHHh----cCCCCChHHHHHHHHH
Q 045357 48 LINLIE----AGPQHLRPAIFKSLLY 69 (244)
Q Consensus 48 V~kmL~----~lp~~~R~~A~~SLiY 69 (244)
+..+|+ .++++.|...++||+-
T Consensus 20 L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 20 LIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHH
Confidence 455555 3899999999999974
No 4
>PF14653 IGFL: Insulin growth factor-like family
Probab=17.06 E-value=69 Score=25.81 Aligned_cols=15 Identities=33% Similarity=1.181 Sum_probs=13.3
Q ss_pred ccCCCCCCccccCCC
Q 045357 10 RKGCGDDCIIKPCLD 24 (244)
Q Consensus 10 RRrC~~dCilAPYFP 24 (244)
-++|..+|.|.|+|.
T Consensus 42 T~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 42 TRKCGPNCTFWPCFE 56 (89)
T ss_pred ccccCCCCCccCccc
Confidence 378999999999995
No 5
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=16.06 E-value=89 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=23.1
Q ss_pred ccHHHHHhcC--CCCChHHHHHHHHHHhh
Q 045357 46 AGLINLIEAG--PQHLRPAIFKSLLYEAC 72 (244)
Q Consensus 46 SNV~kmL~~l--p~~~R~~A~~SLiYEA~ 72 (244)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3688889875 78899999999999995
No 6
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=15.20 E-value=63 Score=25.89 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHhhccccCCCCCchHHhh
Q 045357 68 LYEACGRIVDPISGSVGLLW 87 (244)
Q Consensus 68 iYEA~aR~rDPVyGcvG~I~ 87 (244)
-++-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56778899999999986544
No 7
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=13.59 E-value=1.3e+02 Score=22.53 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.6
Q ss_pred HHHHhcccc--HHHHHhcCCCCCh
Q 045357 39 LAKFYGRAG--LINLIEAGPQHLR 60 (244)
Q Consensus 39 vhKvFG~SN--V~kmL~~lp~~~R 60 (244)
-+.+||.++ |.++|++||-.++
T Consensus 53 G~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 53 GPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred HhHhcCCCCHHHHHHHHhCCCcch
Confidence 478899875 8999999997543
No 8
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=10.95 E-value=97 Score=20.30 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=10.6
Q ss_pred CcccchhcccCCCC
Q 045357 2 SCNGCRILRKGCGD 15 (244)
Q Consensus 2 ~CAACK~lRRrC~~ 15 (244)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 68999999999986
No 9
>PF14623 Vint: Hint-domain
Probab=10.72 E-value=72 Score=28.04 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred HHHHhccccHHHHHhcCCCCChHHHHHHHHHHhhccccCCCCCc
Q 045357 39 LAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGS 82 (244)
Q Consensus 39 vhKvFG~SNV~kmL~~lp~~~R~~A~~SLiYEA~aR~rDPVyGc 82 (244)
+|.|||...|.+=|..|+.-.- =+.+...-.|||..|-
T Consensus 122 aH~fFG~~~V~~~L~~L~~~~~------G~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 122 AHAFFGDNAVVRDLASLPGFAN------GVVECRGVKRDPETGL 159 (162)
T ss_pred eecccCcHHHHHHHHhCCCCCC------CEEEecceEECccccc
Confidence 6999999999999999987421 1445556688887764
No 10
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=9.50 E-value=4.9e+02 Score=20.32 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=24.5
Q ss_pred cCCCCcCCChHHHHHHHHHHHHhccccHHHHHhcCCCCCh-HHHHHHHHHHh
Q 045357 21 PCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR-PAIFKSLLYEA 71 (244)
Q Consensus 21 PYFP~~~s~e~q~fa~~FvhKvFG~SNV~kmL~~lp~~~R-~~A~~SLiYEA 71 (244)
|.|.|. ..+.......-.+...-|+-.+..+....| +..+++|.-|+
T Consensus 9 P~F~wd----~~~l~~~l~~~~~~~G~LlG~~~~l~~~~~~~~~l~~l~~e~ 56 (82)
T PF13776_consen 9 PNFRWD----SSALEPLLAEVRLRQGRLLGKMSHLGFDLRQEAILDTLTAEI 56 (82)
T ss_pred CCCEEc----HHHHHHHHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 788772 222222112222334456667788886554 45556666554
Done!