Query 045357
Match_columns 244
No_of_seqs 137 out of 295
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lrv_A LRV, leucine-rich repea 15.5 62 0.0021 27.7 1.8 75 2-99 13-96 (244)
2 2csf_A DNA-binding protein SAT 11.6 1E+02 0.0034 24.4 1.7 19 35-53 37-57 (101)
3 2jr2_A UPF0352 protein CPS_261 10.1 85 0.0029 23.7 0.8 20 48-67 41-60 (76)
4 1erp_A Pheromone ER-10; NMR {E 9.3 65 0.0022 21.3 -0.1 9 81-89 26-34 (38)
5 3dzy_D Peroxisome proliferator 9.1 77 0.0026 29.0 0.3 19 1-19 68-96 (419)
6 1bh4_A Circulin A; cyclic pept 7.9 1.7E+02 0.0057 18.5 1.4 11 13-23 1-11 (30)
7 1erc_A Pheromone ER-1; NMR {Eu 7.5 91 0.0031 20.8 0.0 8 81-88 27-34 (40)
8 1r1f_A Palicourein; cyclotide, 7.4 1.5E+02 0.0052 19.6 1.1 14 12-25 2-17 (37)
9 2hj3_A Sulfhydryl oxidase ERV1 7.3 5E+02 0.017 20.1 4.3 43 39-82 47-99 (125)
10 1wyu_A Glycine dehydrogenase ( 7.2 2.1E+02 0.0071 24.9 2.3 32 23-57 1-32 (438)
No 1
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=15.54 E-value=62 Score=27.72 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=42.9
Q ss_pred Ccccchhcc-----cCCCCC--CccccCCCCcCCChHHHHHHHHHHHHhccc--cHHHHHhcCCCCChHHHHHHHHHHhh
Q 045357 2 SCNGCRILR-----KGCGDD--CIIKPCLDWIKSSDAQANATLFLAKFYGRA--GLINLIEAGPQHLRPAIFKSLLYEAC 72 (244)
Q Consensus 2 ~CAACK~lR-----RrC~~d--CilAPYFP~~~s~e~q~fa~~FvhKvFG~S--NV~kmL~~lp~~~R~~A~~SLiYEA~ 72 (244)
.|+.|.|+- -+|.++ |+..+|=.. +-+||... -+..++++-.++-|..+++.|
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~r-------------i~~~~~~~p~l~~~ll~d~~~~VR~~AA~~l----- 74 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVESGRQ-------------IDRFFRNNPHLAVQYLADPFWERRAIAVRYS----- 74 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSCHHH-------------HHHHHHHCGGGGGGGTTCSSHHHHHHHHTTS-----
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCcHHH-------------HHHHHcCCHHHHHHHhcCCCHHHHHHHHHhC-----
Confidence 699999998 789966 999887631 34444221 222333333445677777654
Q ss_pred ccccCCCCCchHHhhhchhHHHHHHHH
Q 045357 73 GRIVDPISGSVGLLWSGKWEQCQAAVD 99 (244)
Q Consensus 73 aR~rDPVyGcvG~I~~Lq~qi~qaavE 99 (244)
|+.....++..-++.+...+++
T Consensus 75 -----~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 75 -----PVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp -----CGGGGGGGTTCSSHHHHHHHHT
T ss_pred -----CHHHHHHHccCcCHHHHHHHHH
Confidence 3333444444445555554443
No 2
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=11.61 E-value=1e+02 Score=24.37 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHhcc--ccHHHHHh
Q 045357 35 ATLFLAKFYGR--AGLINLIE 53 (244)
Q Consensus 35 a~~FvhKvFG~--SNV~kmL~ 53 (244)
+++|+.++|++ ..+..||+
T Consensus 37 Qa~FAk~vlnRsQGtLSelLR 57 (101)
T 2csf_A 37 QALFAKVAANKSQGWLCELLR 57 (101)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHh
Confidence 35688999999 57888887
No 3
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=10.12 E-value=85 Score=23.67 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCChHHHHHHH
Q 045357 48 LINLIEAGPQHLRPAIFKSL 67 (244)
Q Consensus 48 V~kmL~~lp~~~R~~A~~SL 67 (244)
++++|+.+++.||..++++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56778899999999887764
No 4
>1erp_A Pheromone ER-10; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=9.34 E-value=65 Score=21.31 Aligned_cols=9 Identities=33% Similarity=1.228 Sum_probs=7.6
Q ss_pred CchHHhhhc
Q 045357 81 GSVGLLWSG 89 (244)
Q Consensus 81 GcvG~I~~L 89 (244)
||+|+||+-
T Consensus 26 gc~~~v~~~ 34 (38)
T 1erp_A 26 GCLGMVWNP 34 (38)
T ss_dssp HHHHHHTST
T ss_pred CeEEEEecc
Confidence 999999863
No 5
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=9.06 E-value=77 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.815 Sum_probs=12.9
Q ss_pred CCcccchh------cc----cCCCCCCcc
Q 045357 1 MSCNGCRI------LR----KGCGDDCII 19 (244)
Q Consensus 1 ~~CAACK~------lR----RrC~~dCil 19 (244)
++|.|||. ++ .+|..+|.+
T Consensus 68 ~~C~~C~~FFrR~~~~~~~~~~c~~~C~~ 96 (419)
T 3dzy_D 68 HACEGCKGFFRRTIRLKLIYDRCDLNCRI 96 (419)
T ss_dssp BCCHHHHHHHHHHHTTTCCCCCCCSCCCC
T ss_pred ccchhhhHHHccchhcccccccccCCCCc
Confidence 37999982 11 268888976
No 6
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=7.87 E-value=1.7e+02 Score=18.52 Aligned_cols=11 Identities=45% Similarity=1.630 Sum_probs=9.4
Q ss_pred CCCCCccccCC
Q 045357 13 CGDDCIIKPCL 23 (244)
Q Consensus 13 C~~dCilAPYF 23 (244)
|.+.|++-|+|
T Consensus 1 CGEsCv~~pC~ 11 (30)
T 1bh4_A 1 CGESCVWIPCI 11 (30)
T ss_dssp CCCCCSSSCCS
T ss_pred CCcceeeeEcc
Confidence 77889998887
No 7
>1erc_A Pheromone ER-1; NMR {Euplotes raikovi} SCOP: a.10.1.1 PDB: 2erl_A*
Probab=7.48 E-value=91 Score=20.80 Aligned_cols=8 Identities=25% Similarity=0.467 Sum_probs=7.2
Q ss_pred CchHHhhh
Q 045357 81 GSVGLLWS 88 (244)
Q Consensus 81 GcvG~I~~ 88 (244)
||+|+||+
T Consensus 27 GC~~~i~~ 34 (40)
T 1erc_A 27 GCYMYIYS 34 (40)
T ss_dssp HHHHHHHH
T ss_pred CeEEEEec
Confidence 99999986
No 8
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=7.40 E-value=1.5e+02 Score=19.58 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=11.0
Q ss_pred CCCCCCcccc-C-CCC
Q 045357 12 GCGDDCIIKP-C-LDW 25 (244)
Q Consensus 12 rC~~dCilAP-Y-FP~ 25 (244)
-|.+.|++-| | |.|
T Consensus 2 pCGEsCv~iP~Ct~t~ 17 (37)
T 1r1f_A 2 FCGETCRVIPVCTYSA 17 (37)
T ss_dssp CCSSCCSSSCSCSSGG
T ss_pred CcccceEEcccccccc
Confidence 4889999999 7 743
No 9
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=7.30 E-value=5e+02 Score=20.14 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHhc----cccHHHHHhcCCC--CChHHHHHHHHHH----hhccccCCCCCc
Q 045357 39 LAKFYG----RAGLINLIEAGPQ--HLRPAIFKSLLYE----ACGRIVDPISGS 82 (244)
Q Consensus 39 vhKvFG----~SNV~kmL~~lp~--~~R~~A~~SLiYE----A~aR~rDPVyGc 82 (244)
+.+||+ +....+|++..|+ .-|.+++.= +++ -|.|+.+|.+-|
T Consensus 47 ~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lW-Lw~~HN~VN~rL~Kp~f~c 99 (125)
T 2hj3_A 47 LSRMYPCRECADHFKEILRSNPAQAGSQEEFSQW-LCHVHNTVNRSLGKLVFPC 99 (125)
T ss_dssp HHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHH-HHHHHHHHHHHTTCCCCCT
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHHHHHHhhCCCCCCH
Confidence 577766 4567788888765 356665544 444 488999999988
No 10
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=7.25 E-value=2.1e+02 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=20.0
Q ss_pred CCCcCCChHHHHHHHHHHHHhccccHHHHHhcCCC
Q 045357 23 LDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQ 57 (244)
Q Consensus 23 FP~~~s~e~q~fa~~FvhKvFG~SNV~kmL~~lp~ 57 (244)
||||+..+.+... +-+..|+..|-.++.++|+
T Consensus 1 ~~~~~~~~~~~~~---ml~~~g~~~~~~~~~~~p~ 32 (438)
T 1wyu_A 1 MDYTPHTEEEIRE---MLRRVGAASLEDLFAHLPK 32 (438)
T ss_dssp CCCCCCCHHHHHH---HHHHHTCSSTGGGGTTSCG
T ss_pred CCCCCcCHHHHHH---HHHHcCCCCHHHHHHhCcH
Confidence 3444454444322 5778899999888776654
Done!