Query 045358
Match_columns 200
No_of_seqs 131 out of 1045
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 2.3E-97 5E-102 670.8 21.2 194 3-200 4-197 (388)
2 PLN02243 S-adenosylmethionine 100.0 1.1E-96 2E-101 671.8 22.2 200 1-200 1-200 (386)
3 PRK12459 S-adenosylmethionine 100.0 1E-95 2E-100 666.0 21.9 194 1-200 1-196 (386)
4 PTZ00104 S-adenosylmethionine 100.0 3.8E-95 8E-100 663.8 21.9 197 2-200 9-206 (398)
5 PRK05250 S-adenosylmethionine 100.0 6.4E-95 1.4E-99 660.5 22.2 191 3-200 2-192 (384)
6 TIGR01034 metK S-adenosylmethi 100.0 7.6E-95 1.7E-99 658.3 21.4 189 5-200 1-189 (377)
7 KOG1506 S-adenosylmethionine s 100.0 4.6E-95 1E-99 643.5 18.3 198 1-200 3-200 (383)
8 PF00438 S-AdoMet_synt_N: S-ad 100.0 1.2E-53 2.7E-58 329.0 6.1 100 2-101 1-100 (100)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 7E-48 1.5E-52 305.3 9.4 81 117-200 2-82 (120)
10 PF01941 AdoMet_Synthase: S-ad 98.0 6.7E-05 1.4E-09 70.3 11.1 145 12-171 26-199 (396)
11 PRK04439 S-adenosylmethionine 97.8 0.00017 3.7E-09 67.7 10.9 145 12-171 26-199 (399)
12 COG1812 MetK Archaeal S-adenos 96.2 0.039 8.5E-07 51.8 9.8 146 11-171 25-200 (400)
13 PRK11023 outer membrane lipopr 66.8 11 0.00024 31.7 4.7 43 17-59 121-164 (191)
14 PF14084 DUF4264: Protein of u 63.5 1.8 3.9E-05 30.3 -0.6 39 98-142 11-49 (52)
15 PRK11198 LysM domain/BON super 58.2 19 0.0004 29.2 4.4 40 20-60 24-63 (147)
16 PF04566 RNA_pol_Rpb2_4: RNA p 57.4 25 0.00053 25.0 4.4 26 146-178 15-40 (63)
17 cd01269 PLX Pollux (PLX) Phosp 53.1 43 0.00094 27.5 5.6 82 51-135 6-94 (129)
18 PF04208 MtrA: Tetrahydrometha 50.4 21 0.00045 30.6 3.6 42 33-75 17-65 (176)
19 TIGR02889 spore_YpeB germinati 49.2 64 0.0014 31.0 7.1 97 38-141 262-371 (435)
20 PF02171 Piwi: Piwi domain; I 48.4 15 0.00032 32.0 2.5 22 134-155 279-300 (302)
21 COG5309 Exo-beta-1,3-glucanase 43.9 21 0.00046 32.9 2.8 85 16-108 110-194 (305)
22 PRK11023 outer membrane lipopr 39.5 1E+02 0.0022 25.9 6.1 42 18-60 44-88 (191)
23 COG4081 Uncharacterized protei 38.9 19 0.00041 30.0 1.6 23 129-151 9-31 (148)
24 PRK04964 hypothetical protein; 37.6 30 0.00065 25.3 2.2 24 116-151 13-36 (66)
25 PRK14053 methyltransferase; Pr 37.4 47 0.001 28.9 3.8 43 32-75 16-62 (194)
26 PF06786 UPF0253: Uncharacteri 35.8 34 0.00074 25.0 2.3 25 116-152 13-37 (66)
27 PRK00964 tetrahydromethanopter 34.7 46 0.001 29.6 3.4 43 32-75 19-69 (225)
28 PRK10568 periplasmic protein; 34.6 1.1E+02 0.0025 25.8 5.7 51 23-76 61-111 (203)
29 TIGR03315 Se_ygfK putative sel 31.1 36 0.00078 36.1 2.5 18 135-152 325-342 (1012)
30 cd04658 Piwi_piwi-like_Euk Piw 30.7 42 0.00091 31.5 2.7 28 126-153 420-447 (448)
31 PF00379 Chitin_bind_4: Insect 30.5 22 0.00048 23.7 0.6 20 158-178 28-47 (52)
32 PRK09819 alpha-mannosidase; Pr 30.3 16 0.00036 37.4 -0.1 62 13-76 41-108 (875)
33 PF05046 Img2: Mitochondrial l 27.2 1.2E+02 0.0025 22.7 4.0 39 32-78 49-87 (87)
34 COG2823 OsmY Predicted peripla 27.2 1E+02 0.0023 26.6 4.3 38 23-60 132-169 (196)
35 PF04972 BON: BON domain; Int 26.8 1.5E+02 0.0032 19.7 4.2 21 41-61 18-38 (64)
36 PF13986 DUF4224: Domain of un 26.5 75 0.0016 21.3 2.6 27 149-175 18-44 (47)
37 PF03645 Tctex-1: Tctex-1 fami 26.2 99 0.0021 22.8 3.5 32 17-48 26-59 (101)
38 PF12637 TSCPD: TSCPD domain; 26.2 71 0.0015 24.1 2.8 21 166-188 6-26 (95)
39 TIGR01111 mtrA N5-methyltetrah 25.8 81 0.0018 28.3 3.4 43 32-75 19-69 (238)
40 COG5086 Uncharacterized conser 25.7 79 0.0017 27.7 3.2 25 133-157 36-60 (218)
41 PF09001 DUF1890: Domain of un 25.4 21 0.00045 29.6 -0.3 20 131-150 6-25 (139)
42 PRK09853 putative selenate red 25.2 49 0.0011 35.2 2.3 18 135-152 327-344 (1019)
43 COG1596 Wza Periplasmic protei 24.7 1.6E+02 0.0035 25.6 5.1 60 18-77 93-156 (239)
44 cd04657 Piwi_ago-like Piwi_ago 23.9 59 0.0013 30.4 2.4 27 127-153 397-423 (426)
45 KOG3323 D-Tyr-tRNA (Tyr) deacy 23.6 1.2E+02 0.0025 25.5 3.7 42 44-85 21-63 (149)
46 cd02826 Piwi-like Piwi-like: P 22.9 65 0.0014 29.7 2.4 26 127-152 366-391 (393)
47 PHA01812 hypothetical protein 22.4 99 0.0021 24.4 3.0 54 119-181 55-109 (122)
48 PF08401 DUF1738: Domain of un 22.4 98 0.0021 24.3 3.0 25 144-168 4-28 (125)
49 TIGR03027 pepcterm_export puta 22.3 2.3E+02 0.0051 22.8 5.3 62 17-80 47-113 (165)
50 COG1646 Predicted phosphate-bi 22.2 2.3E+02 0.0049 25.6 5.5 57 47-108 41-108 (240)
51 PF13982 YbfN: YbfN-like lipop 21.9 54 0.0012 25.2 1.4 45 12-72 22-66 (89)
52 PRK05588 histidinol-phosphatas 21.9 70 0.0015 27.4 2.2 30 13-46 142-186 (255)
53 PF07293 DUF1450: Protein of u 21.4 2E+02 0.0044 21.4 4.3 49 25-76 17-72 (78)
54 PF01042 Ribonuc_L-PSP: Endori 21.0 2.2E+02 0.0047 21.6 4.6 38 35-76 9-52 (121)
55 COG0083 ThrB Homoserine kinase 20.5 39 0.00085 31.0 0.4 11 11-21 125-135 (299)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-97 Score=670.79 Aligned_cols=194 Identities=62% Similarity=0.976 Sum_probs=186.1
Q ss_pred cceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCCC
Q 045358 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSAD 82 (200)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 82 (200)
.+|||||||+|||||||||||||||||+||++||+|||||||++++|+|+|+|||+|+++||+++++|++|++|||++++
T Consensus 4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~ 83 (388)
T COG0192 4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD 83 (388)
T ss_pred cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 045358 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCP 162 (200)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~ 162 (200)
+|||+++|.|+++|++|||||+|||+...+ ..+++|||||||||||||||||+||||||+|||+|++|++++||+|.+|
T Consensus 84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~ 162 (388)
T COG0192 84 YGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP 162 (388)
T ss_pred cCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999997532 3457999999999999999999999999999999999999999999999
Q ss_pred cccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 163 ~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||+||||||+|+++ + +|+||+|||+||||+++
T Consensus 163 ~LrpD~KsQVtv~Y~~~-~--~p~~idtIvvStQH~~~ 197 (388)
T COG0192 163 WLRPDAKSQVTVEYEDN-G--KPVRIDTIVVSTQHDPD 197 (388)
T ss_pred ccCCCcceeEEEEEcCC-C--CceeEEEEEEEeccCcc
Confidence 99999999999999863 3 89999999999999874
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=1.1e-96 Score=671.81 Aligned_cols=200 Identities=94% Similarity=1.425 Sum_probs=188.1
Q ss_pred CCcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCC
Q 045358 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~ 80 (200)
|.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 045358 81 ADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGT 160 (200)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~ 160 (200)
+++|||+++|.|++.|++|||||++||+.+.++..+++|||||||||||||||||+||||||+|||||++||+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985433223458999999999999999999999999999999999999999999
Q ss_pred CCcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 161 CPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 161 ~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
+|||||||||||||+|+++.+.++|+||+|||+|+||+++
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~ 200 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDET 200 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCC
Confidence 9999999999999999764353459999999999999874
No 3
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=1e-95 Score=666.03 Aligned_cols=194 Identities=62% Similarity=0.989 Sum_probs=183.3
Q ss_pred CCcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCC
Q 045358 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~ 80 (200)
|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+|+|||++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhhcccCCCC--CCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 045358 81 ADVGLDADHCKVLVNIEQQSPDIAQGVHGHLT--KRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKN 158 (200)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~ 158 (200)
++|||+++|.|+++|++|||||++||+.+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999974321 1124689999999999999999999999999999999999999999
Q ss_pred CCCCcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 159 GTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 159 g~~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|.+|||||||||||||+|+++ +|+||+|||||+||+++
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~~----~P~rv~tivvS~QH~~~ 196 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYEDG----RPVRVDTIVVSAQHDES 196 (386)
T ss_pred CCCCeecCCCceEEEEEeeCC----ceeEEEEEEEeeccCCC
Confidence 999999999999999999753 89999999999999874
No 4
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=3.8e-95 Score=663.81 Aligned_cols=197 Identities=74% Similarity=1.137 Sum_probs=185.4
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++|||++|||++|++|||+++
T Consensus 9 ~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~ 88 (398)
T PTZ00104 9 GHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDT 88 (398)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 045358 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||+++|.|++.|++|||||++||+.. +..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 89 ~~gfd~~t~~v~~~i~~QSpDIa~gV~~~--~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~ 166 (398)
T PTZ00104 89 EKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGIL 166 (398)
T ss_pred ccCcCCCceEEEecCCCCChhHhhccccc--cccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999843 1124589999999999999999999999999999999999999999999
Q ss_pred CcccCCccceEEEEEecCC-CeeeeeEEeEEEEeeeeCCC
Q 045358 162 PWLRPDGKTQVTVEYYNEN-GAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KsQVtv~Y~~~~-~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||||||||||+|+++. +.|+|+||+|||+|+||+++
T Consensus 167 ~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~ 206 (398)
T PTZ00104 167 PWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEG 206 (398)
T ss_pred CeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCC
Confidence 9999999999999997531 12589999999999999874
No 5
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=6.4e-95 Score=660.46 Aligned_cols=191 Identities=63% Similarity=0.983 Sum_probs=183.7
Q ss_pred cceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCCC
Q 045358 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSAD 82 (200)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 82 (200)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 045358 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCP 162 (200)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~ 162 (200)
+|||+++|.|+++|++|||||+|||+.. ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2346899999999999999999999999999999999999999999999
Q ss_pred cccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 163 ~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||||+|+++ +|+||++||||+||+++
T Consensus 159 ~l~PD~KtQVtv~Y~~~----~p~~i~tiviS~QH~~~ 192 (384)
T PRK05250 159 YLRPDAKSQVTVEYENG----KPVRIDTIVVSTQHDPD 192 (384)
T ss_pred eecCCCceEEEEEEECC----ceeeEEEEEEeccCCCC
Confidence 99999999999999753 79999999999999974
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=7.6e-95 Score=658.26 Aligned_cols=189 Identities=64% Similarity=0.982 Sum_probs=181.6
Q ss_pred eeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCCCCC
Q 045358 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVG 84 (200)
Q Consensus 5 lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~~g 84 (200)
|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 045358 85 LDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWL 164 (200)
Q Consensus 85 fd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~l 164 (200)
||+++|.|+++|++|||||+|||+++. .+++||||||||||||||||||||||||+|||+|++||+++||+|.+|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~~---~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKAN---PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccCc---cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 999999999999999999999998431 23589999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 165 RPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 165 rPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||+|+++ +|+||+|||||+||+++
T Consensus 158 ~PD~KtQVtveY~~~----~P~rv~tivvS~QH~~~ 189 (377)
T TIGR01034 158 RPDGKSQVTVQYEDN----KPVRVDTIVLSTQHDPD 189 (377)
T ss_pred cCCCceEEEEEEECC----ceeEEEEEEEecCCCCC
Confidence 999999999999753 79999999999999874
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.6e-95 Score=643.47 Aligned_cols=198 Identities=72% Similarity=1.113 Sum_probs=192.5
Q ss_pred CCcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCC
Q 045358 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~ 80 (200)
+.+||||||||+||||||+|||||||||||||+|||+|+|||||..++|||+++|||||+|.|||+++||++++.|||++
T Consensus 3 ~~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGydd 82 (383)
T KOG1506|consen 3 METFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDD 82 (383)
T ss_pred CceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 045358 81 ADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGT 160 (200)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~ 160 (200)
+..|||++||+|+++|++|||||||||+- ++..+++||||||+|||||||||||+|||++.|||||..+|+++||+|.
T Consensus 83 sskGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~ 160 (383)
T KOG1506|consen 83 SSKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGT 160 (383)
T ss_pred cccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCc
Confidence 99999999999999999999999999994 4566789999999999999999999999999999999999999999999
Q ss_pred CCcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 161 CPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 161 ~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
+||||||+|+|||++|.+++|++.|.||||||||+||+++
T Consensus 161 l~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~ 200 (383)
T KOG1506|consen 161 LPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSED 200 (383)
T ss_pred ccccccCCcceEEEEEecCCCceeeeEEEEEEEecccCcc
Confidence 9999999999999999999999999999999999999874
No 8
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=1.2e-53 Score=328.98 Aligned_cols=100 Identities=60% Similarity=1.044 Sum_probs=93.2
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++||+++||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCCh
Q 045358 82 DVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~ 101 (200)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=7e-48 Score=305.33 Aligned_cols=81 Identities=72% Similarity=1.162 Sum_probs=74.4
Q ss_pred CCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCccceEEEEEecCCCeeeeeEEeEEEEeee
Q 045358 117 EIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQ 196 (200)
Q Consensus 117 ~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~Q 196 (200)
++|||||||||||||||||+||||||+|||+|++||+++|++|.+|||||||||||||+|+++ + +|+||+|||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 3 8999999999999
Q ss_pred eCCC
Q 045358 197 HDET 200 (200)
Q Consensus 197 H~~~ 200 (200)
|+++
T Consensus 79 H~~~ 82 (120)
T PF02772_consen 79 HDED 82 (120)
T ss_dssp E-TT
T ss_pred CCCC
Confidence 9874
No 10
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=97.99 E-value=6.7e-05 Score=70.32 Aligned_cols=145 Identities=23% Similarity=0.273 Sum_probs=96.0
Q ss_pred CCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEEEeee--------CeEEEEEEEeece---eccHHH
Q 045358 12 NEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACETCTKT--------NMVMVFGEITTKA---NVDYEK 67 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~~--------~~V~v~GEitt~a---~vD~~~ 67 (200)
+-||||-|||-|++++=-++ |++ |+-.-||-+..-+- =.++++|..|+.. .+.+.+
T Consensus 26 GiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~~ 105 (396)
T PF01941_consen 26 GIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVDE 105 (396)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHHH
Confidence 67999999999999875442 222 77777777765442 2488999988764 678888
Q ss_pred HHHHHHHhcCCCCCCCCCCCC-ceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHH
Q 045358 68 IVRDTCRSIGFTSADVGLDAD-HCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLAT 146 (200)
Q Consensus 68 ivR~~i~~IGY~~~~~gfd~~-~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh 146 (200)
|+.++.|+- ....--.||.+ ...|...+.+-|+|+..-..+. ..-.+|-|-.+..|||- | .-.-
T Consensus 106 Ia~~aak~~-l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~----~~vp~ANDTS~gVGyAP--------l--S~~E 170 (396)
T PF01941_consen 106 IAIEAAKEW-LRENLRFLDPERHVIIDCRIGPGSPDLVDVFERG----KKVPLANDTSFGVGYAP--------L--SETE 170 (396)
T ss_pred HHHHHHHHH-HHHhcccCCccccEEEEEeeCCCChHHHHHhccc----ccccccCCccceeccCC--------c--cHHH
Confidence 866665541 11112345655 4788888999999998765532 11358999999999983 3 2233
Q ss_pred HHHHHHHHHHHc----CCCCcccCCccce
Q 045358 147 KLGAKLTEVRKN----GTCPWLRPDGKTQ 171 (200)
Q Consensus 147 ~L~~rl~~~Rk~----g~~~~lrPD~KsQ 171 (200)
+|+..++..-.+ ..+||.+.|-|.-
T Consensus 171 ~~Vl~~Er~lns~~fk~~~p~~GeDiKVM 199 (396)
T PF01941_consen 171 KLVLETERYLNSPEFKKKFPEVGEDIKVM 199 (396)
T ss_pred HHHHHHHHHhccccccccCCCcCCCeEEE
Confidence 333343333221 3589999999973
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=97.83 E-value=0.00017 Score=67.74 Aligned_cols=145 Identities=22% Similarity=0.277 Sum_probs=93.1
Q ss_pred CCCCCcchhhhhhHHHHHH----Hhhc---------CCCCeEEEEEEeee--C------eEEEEEEEeece---eccHHH
Q 045358 12 NEGHPDKLCDQVSDAVLDA----CLAQ---------DPDSKVACETCTKT--N------MVMVFGEITTKA---NVDYEK 67 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa----~L~~---------Dp~arVA~E~~v~~--~------~V~v~GEitt~a---~vD~~~ 67 (200)
+-||||-|||-|++++=-+ ||++ |+-.-||-+..-+- | .++++|..|+.. .+.+.+
T Consensus 26 GiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~~ 105 (399)
T PRK04439 26 GIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVGE 105 (399)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHHH
Confidence 6799999999999987544 3332 77777777765442 2 357899888754 378888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCc-eEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHH
Q 045358 68 IVRDTCRSIGFTSADVGLDADH-CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLAT 146 (200)
Q Consensus 68 ivR~~i~~IGY~~~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh 146 (200)
|+.++.|+- ....--.||.+. ..|...|.+-|+|+..-..+. ..-.+|-|-.+..|||- |+ ---
T Consensus 106 Ia~~Aak~~-L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~----~~vp~ANDTS~gVGyAP--------lS--~~E 170 (399)
T PRK04439 106 IAIEAAKEY-LRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE----SIVPLANDTSFGVGYAP--------LS--ETE 170 (399)
T ss_pred HHHHHHHHH-HHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC----CCccccccccceeecCC--------CC--HHH
Confidence 875555441 111122355543 677888999999998654421 11358999999999983 32 223
Q ss_pred HHHHHHHHHHHc----CCCCcccCCccce
Q 045358 147 KLGAKLTEVRKN----GTCPWLRPDGKTQ 171 (200)
Q Consensus 147 ~L~~rl~~~Rk~----g~~~~lrPD~KsQ 171 (200)
+|+..++..-.+ ..+||.+.|-|.-
T Consensus 171 ~~Vl~~E~~lns~~~k~~~P~~GeDiKVM 199 (399)
T PRK04439 171 RLVLETERYLNSEEFKKRFPEVGEDIKVM 199 (399)
T ss_pred HHHHHHHHHhcCcchhhcCCCcCCCeEEE
Confidence 333333333221 3689999999973
No 12
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.039 Score=51.76 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=83.7
Q ss_pred CCCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEE--------EeeeCeEEEEEEEeec---eeccHH
Q 045358 11 VNEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACET--------CTKTNMVMVFGEITTK---ANVDYE 66 (200)
Q Consensus 11 V~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~--------~v~~~~V~v~GEitt~---a~vD~~ 66 (200)
=+-||||-|||-|+.+|=-++ |+. |.---||-+. ++..=.+++.|.-|.. ..+++.
T Consensus 25 KGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip~~ 104 (400)
T COG1812 25 KGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIPVG 104 (400)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeeccch
Confidence 367999999999988875443 222 3333333332 1222246777776643 346666
Q ss_pred HHHHHHHHhcCCCC-CCCCCCCCc-eEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHH
Q 045358 67 KIVRDTCRSIGFTS-ADVGLDADH-CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVL 144 (200)
Q Consensus 67 ~ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~l 144 (200)
.|+-++.|+ |=. .---+|.++ +-+-..|.+-|.|+..-..+.. ..-..|-|-..+.||| ||+.
T Consensus 105 ~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~---~~VplANDTSfgVG~A--------PLs~-- 169 (400)
T COG1812 105 SIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAK---EEVPLANDTSFGVGFA--------PLSE-- 169 (400)
T ss_pred HHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhcc---cCCcccccccceeccC--------CCcH--
Confidence 665444443 111 112356664 4566778888999875444321 1235899999999998 3332
Q ss_pred HHHHHHH----HHHHHHcCCCCcccCCccce
Q 045358 145 ATKLGAK----LTEVRKNGTCPWLRPDGKTQ 171 (200)
Q Consensus 145 Ah~L~~r----l~~~Rk~g~~~~lrPD~KsQ 171 (200)
..+|+.. |...--...+|..+.|-|.-
T Consensus 170 tErlV~etEr~lns~~~k~~~P~vGeDIKVM 200 (400)
T COG1812 170 TERLVLETERYLNSPEFKKKLPAVGEDIKVM 200 (400)
T ss_pred HHHHHHHHHHHhcChhhcccCCCcCCceEEE
Confidence 2333332 22222224689999999974
No 13
>PRK11023 outer membrane lipoprotein; Provisional
Probab=66.83 E-value=11 Score=31.72 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=32.7
Q ss_pred cchhhh-hhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEee
Q 045358 17 DKLCDQ-VSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITT 59 (200)
Q Consensus 17 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt 59 (200)
+...|. |+..|-.+++..+.-..-.+.+-+.+|.|++.|+++.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 444554 7778888888776666666788888999999999953
No 14
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=63.47 E-value=1.8 Score=30.30 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHH
Q 045358 98 QQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSH 142 (200)
Q Consensus 98 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i 142 (200)
+-++|+-.-||. + +.---|+++|||.+-||-++=|-++|
T Consensus 11 ~~~~dlYKvVDf-L-----NktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDF-L-----NKTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHH-H-----hhhhhhccEEEEEeecCcCCEEEEEE
Confidence 346777777763 1 12356889999999987777665544
No 15
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=58.23 E-value=19 Score=29.16 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeec
Q 045358 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60 (200)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~ 60 (200)
..+|+|+|+.++-++...+.- +.+-+.+|.|.+.|.+.+.
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 489999999998888665544 6788889999999998874
No 16
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=57.36 E-value=25 Score=24.97 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCCCcccCCccceEEEEEec
Q 045358 146 TKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 178 (200)
Q Consensus 146 h~L~~rl~~~Rk~g~~~~lrPD~KsQVtv~Y~~ 178 (200)
.+|++.|.++|++|.++ .+|++.|+.
T Consensus 15 ~~l~~~lr~~RR~g~i~-------~~vsi~~~~ 40 (63)
T PF04566_consen 15 EELVKTLRNLRRSGKIS-------KEVSIVYDI 40 (63)
T ss_dssp HHHHHHHHHHHHTTSS--------TTSEEEEET
T ss_pred HHHHHHHHHHhhccCCc-------ceeEEEEec
Confidence 47889999999999877 367887764
No 17
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=53.09 E-value=43 Score=27.46 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=49.5
Q ss_pred EEEEEEEeeceeccHHHHHHHHHHhcCCCCCCCCCCCCceEEEEee---cCCChhhhhcccCCCCCCCCCCCCCccc---
Q 045358 51 VMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNI---EQQSPDIAQGVHGHLTKRPEEIGAGDQG--- 124 (200)
Q Consensus 51 V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i---~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 124 (200)
|+..|.+|-.-+---+.++|+.|++.++.+....-+.+|...++.- .-.|||=.+-+.. ....+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~---k~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLE---KNFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEe---cCccccchhhcCCCC
Confidence 6677888765444568899999999999988777788875443321 1234544443321 111111111111
Q ss_pred -ceeeeeCCCCC
Q 045358 125 -HMFGYATDETP 135 (200)
Q Consensus 125 -imfGYA~dET~ 135 (200)
=-|||-|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 25999999997
No 18
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=50.36 E-value=21 Score=30.65 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=32.8
Q ss_pred hcCCCCeEEEEEEeeeCe-------EEEEEEEeeceeccHHHHHHHHHHh
Q 045358 33 AQDPDSKVACETCTKTNM-------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~-------V~v~GEitt~a~vD~~~ivR~~i~~ 75 (200)
--||.|+||+=||.+... .-|+|-..|. ++=+++++++++..
T Consensus 17 vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 17 VGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred ECCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 359999999999988655 4556655554 77899999999765
No 19
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=49.23 E-value=64 Score=31.04 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=61.4
Q ss_pred CeEEEEEEeeeCeEE--EEEEEeeceeccHH---HHHHHHHHhcCCCCCC--CCCCCCceEEEEeecCCChhhhhcccCC
Q 045358 38 SKVACETCTKTNMVM--VFGEITTKANVDYE---KIVRDTCRSIGFTSAD--VGLDADHCKVLVNIEQQSPDIAQGVHGH 110 (200)
Q Consensus 38 arVA~E~~v~~~~V~--v~GEitt~a~vD~~---~ivR~~i~~IGY~~~~--~gfd~~~~~v~~~i~~QS~dIa~gV~~~ 110 (200)
..+-|++-.++|.++ +-..-..+..++.+ +++++.|+++||.+-. +--.++...+++.+..|. ||.-
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~i- 335 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRV- 335 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEE-
Confidence 457899999999776 33322234566654 4799999999997643 112234456666666664 4431
Q ss_pred CCCCCCCC-CCCcccceeee-----eCCCCCCCCCcH
Q 045358 111 LTKRPEEI-GAGDQGHMFGY-----ATDETPELMPLS 141 (200)
Q Consensus 111 ~~~~~~~~-GAGDQGimfGY-----A~dET~e~MPl~ 141 (200)
-.+.-++ -|-|.|=+.|| -+++++.=+|-|
T Consensus 336 -Ypd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 336 -YPDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred -cCCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 0111122 38899999999 788887656776
No 20
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=48.41 E-value=15 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 045358 134 TPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 134 T~e~MPl~i~lAh~L~~rl~~~ 155 (200)
.+--+|.|+.+||+|++|..+.
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4666999999999999998754
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=43.89 E-value=21 Score=32.89 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=56.8
Q ss_pred CcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCCCCCCCCCceEEEEe
Q 045358 16 PDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVN 95 (200)
Q Consensus 16 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~ 95 (200)
-|++.|-+.+.||-+++.+...-.|.- +.-+|-++-.|+.|..--+++-.-||.++++.||+-+- -..++..+..
T Consensus 110 tdd~~~~~~~til~ay~~~~~~d~v~~--v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV--~T~dsw~~~~- 184 (305)
T COG5309 110 TDDIHDAVEKTILSAYLPYNGWDDVTT--VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPV--TTVDSWNVVI- 184 (305)
T ss_pred ccchhhhHHHHHHHHHhccCCCCceEE--EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCce--eecccceeee-
Confidence 378889998999999999977665542 22234455566666655567777899999999998762 1122223322
Q ss_pred ecCCChhhhhccc
Q 045358 96 IEQQSPDIAQGVH 108 (200)
Q Consensus 96 i~~QS~dIa~gV~ 108 (200)
. .|++.+..|
T Consensus 185 --~-np~l~~~SD 194 (305)
T COG5309 185 --N-NPELCQASD 194 (305)
T ss_pred --C-ChHHhhhhh
Confidence 2 688877665
No 22
>PRK11023 outer membrane lipoprotein; Provisional
Probab=39.50 E-value=1e+02 Score=25.91 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=29.5
Q ss_pred chhhh-hhHHHHHHHhhcCCCCe--EEEEEEeeeCeEEEEEEEeec
Q 045358 18 KLCDQ-VSDAVLDACLAQDPDSK--VACETCTKTNMVMVFGEITTK 60 (200)
Q Consensus 18 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~V~v~GEitt~ 60 (200)
++-|+ |+-.|..+ |.+||..+ -.+.+-+..|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444454 55577554 468888999999999999885
No 23
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.89 E-value=19 Score=29.96 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred eeCCCCCCCCCcHHHHHHHHHHH
Q 045358 129 YATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 129 YA~dET~e~MPl~i~lAh~L~~r 151 (200)
.-|-|.|-..|..|+|+|||-+|
T Consensus 9 lGCPeiP~qissaiYls~klkkk 31 (148)
T COG4081 9 LGCPEIPPQISSAIYLSHKLKKK 31 (148)
T ss_pred ecCCCCCccchHHHHHHHHhhcc
Confidence 44999999999999999999988
No 24
>PRK04964 hypothetical protein; Provisional
Probab=37.58 E-value=30 Score=25.26 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.1
Q ss_pred CCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHH
Q 045358 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 116 ~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~r 151 (200)
.+||.|||| |+|-+|..|-|-...
T Consensus 13 a~IgSGd~g------------YiP~Ai~ca~k~L~~ 36 (66)
T PRK04964 13 AEIGSGDLG------------YVPDALGCVLKALNE 36 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHHHHHH
Confidence 368999998 589988887654443
No 25
>PRK14053 methyltransferase; Provisional
Probab=37.36 E-value=47 Score=28.94 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=33.9
Q ss_pred hhcCCCCeEEEEEEeeeCe----EEEEEEEeeceeccHHHHHHHHHHh
Q 045358 32 LAQDPDSKVACETCTKTNM----VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~----V~v~GEitt~a~vD~~~ivR~~i~~ 75 (200)
.--||.|+||+=||.+.-. .-++|-..|. ++=+++++++++.+
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 4459999999999998644 5667766554 77899999999765
No 26
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=35.77 E-value=34 Score=24.97 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=18.5
Q ss_pred CCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHH
Q 045358 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKL 152 (200)
Q Consensus 116 ~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl 152 (200)
.+||.|||| |+|-+|..|-|-...+
T Consensus 13 a~IgSGd~g------------YiP~Ai~calk~Ln~i 37 (66)
T PF06786_consen 13 AQIGSGDQG------------YIPDAIGCALKTLNDI 37 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHHHHHHH
Confidence 368999998 5899888876644433
No 27
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=34.65 E-value=46 Score=29.60 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=32.9
Q ss_pred hhcCCCCeEEEEEEeeeCe--------EEEEEEEeeceeccHHHHHHHHHHh
Q 045358 32 LAQDPDSKVACETCTKTNM--------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~--------V~v~GEitt~a~vD~~~ivR~~i~~ 75 (200)
.--||+|.||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 19 ~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 19 VVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred EeCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 3469999999999998765 3456655554 77899999999765
No 28
>PRK10568 periplasmic protein; Provisional
Probab=34.57 E-value=1.1e+02 Score=25.85 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhc
Q 045358 23 VSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSI 76 (200)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~I 76 (200)
|...|-.+++..+....-.+.+-+.+|.|.|.|++.+.+. ...+.++.+.+
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v 111 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGV 111 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhC
Confidence 4444445544432232345777788999999999987532 22344444444
No 29
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=31.11 E-value=36 Score=36.08 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=15.7
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 045358 135 PELMPLSHVLATKLGAKL 152 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl 152 (200)
..|.||+|.||.+|.+..
T Consensus 325 ~~l~~~~~~~~~~l~~~f 342 (1012)
T TIGR03315 325 RALFPLSINLAAKLSREF 342 (1012)
T ss_pred CccccchHHHHHhhHHhh
Confidence 457899999999999887
No 30
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=30.69 E-value=42 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=22.1
Q ss_pred eeeeeCCCCCCCCCcHHHHHHHHHHHHH
Q 045358 126 MFGYATDETPELMPLSHVLATKLGAKLT 153 (200)
Q Consensus 126 mfGYA~dET~e~MPl~i~lAh~L~~rl~ 153 (200)
-|-|+---.+--+|.|+.+||+|++++.
T Consensus 420 c~~y~~~~~~vs~P~p~~yA~~~a~~~g 447 (448)
T cd04658 420 CHLYYNWSGSIRVPAPCQYAHKLAFLVG 447 (448)
T ss_pred hhcccCCCCCCccCHHHHHHHHHHHHhc
Confidence 3566655566779999999999999873
No 31
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=30.54 E-value=22 Score=23.65 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=16.6
Q ss_pred cCCCCcccCCccceEEEEEec
Q 045358 158 NGTCPWLRPDGKTQVTVEYYN 178 (200)
Q Consensus 158 ~g~~~~lrPD~KsQVtv~Y~~ 178 (200)
.|...|+.|||+ +++|.|.-
T Consensus 28 ~GsY~y~~pdG~-~~~V~Y~A 47 (52)
T PF00379_consen 28 RGSYSYIDPDGQ-TRTVTYVA 47 (52)
T ss_pred EEEEEEECCCCC-EEEEEEEC
Confidence 488899999998 57899964
No 32
>PRK09819 alpha-mannosidase; Provisional
Probab=30.27 E-value=16 Score=37.39 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCCCcchh----hhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEE-ee-ceeccHHHHHHHHHHhc
Q 045358 13 EGHPDKLC----DQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEI-TT-KANVDYEKIVRDTCRSI 76 (200)
Q Consensus 13 eGHPDKic----DqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEi-tt-~a~vD~~~ivR~~i~~I 76 (200)
+=+||-.. -|. ++|+.+|+..|.-+-.+.-+|+.|.++++|-. -+ ...+..+.++|+.+--.
T Consensus 41 e~~p~~~f~~~d~q~--~~l~~~~~~~Pe~~~~ik~lV~~Grl~~G~W~v~~D~~l~sgEsliRqll~G~ 108 (875)
T PRK09819 41 EQDNDYKYYVLDGQT--SLLEDYLAVKPEDKERVKKLVQAGKLIIGPWYTQTDQLVVSGESIVRNLLYGI 108 (875)
T ss_pred HhCCCcceEEEchhH--HHHHHHHHhChHHHHHHHHHHHcCCEeECcEEeecccccCCHHHHHHHHHHHH
Confidence 34677432 254 68999999999888778889999999888873 23 34568899999986543
No 33
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=27.19 E-value=1.2e+02 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=26.9
Q ss_pred hhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCC
Q 045358 32 LAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY 78 (200)
|...+.....+.+--.+|.|.|-| |+..-+++.|.+.||
T Consensus 49 l~~~~~~~~~~~V~~~~g~i~IkG--------~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 49 LGEKPKKKIDVRVNELTGHIEIKG--------DHVEEVKKWLLEKGF 87 (87)
T ss_pred hhhhcCCCcceEEeecCCEEEEcC--------ccHHHHHHHHHHCcC
Confidence 443333455667777888888877 456668888888776
No 34
>COG2823 OsmY Predicted periplasmic or secreted lipoprotein [General function prediction only]
Probab=27.18 E-value=1e+02 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeec
Q 045358 23 VSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60 (200)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~ 60 (200)
|...|=+++|..+.---.=+++.+.+|.|++.|.+.|.
T Consensus 132 iTt~Vka~Ll~~~~v~s~~IkV~t~~g~V~L~G~V~s~ 169 (196)
T COG2823 132 ITTKVKAALLGDDNVKSSNIKVETENGEVYLSGLVDSQ 169 (196)
T ss_pred HHHHHHHHhccCCCCCcceEEEEEECCEEEEEEEeCCH
Confidence 44444555555554322337888899999999999664
No 35
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=26.78 E-value=1.5e+02 Score=19.70 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.1
Q ss_pred EEEEEeeeCeEEEEEEEeece
Q 045358 41 ACETCTKTNMVMVFGEITTKA 61 (200)
Q Consensus 41 A~E~~v~~~~V~v~GEitt~a 61 (200)
-+++.+.+|.|+|.|++.+..
T Consensus 18 ~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 18 NISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp TEEEEEECTEEEEEEEESSCH
T ss_pred eEEEEEECCEEEEEeeCcHHH
Confidence 367777899999999997753
No 36
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=26.53 E-value=75 Score=21.27 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCcccCCccceEEEE
Q 045358 149 GAKLTEVRKNGTCPWLRPDGKTQVTVE 175 (200)
Q Consensus 149 ~~rl~~~Rk~g~~~~lrPD~KsQVtv~ 175 (200)
.+..+-||++|..-+.+|||+--|+-.
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G~p~V~r~ 44 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADGRPIVTRS 44 (47)
T ss_pred HHHHHHHHHCCCeeEECCCCCEEeeHH
Confidence 456778999998778889998887643
No 37
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=26.24 E-value=99 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=24.9
Q ss_pred cchhhhhhHHHHHHHhhc--CCCCeEEEEEEeee
Q 045358 17 DKLCDQVSDAVLDACLAQ--DPDSKVACETCTKT 48 (200)
Q Consensus 17 DKicDqISDaILDa~L~~--Dp~arVA~E~~v~~ 48 (200)
+..+..|++.|++++-+. .|.-|+.+-+++..
T Consensus 26 ~~~~~~I~~~i~~~lk~~~~~~ryK~iv~~~I~q 59 (101)
T PF03645_consen 26 QQWSKEISDEILERLKKLGYSKRYKFIVQVTIGQ 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHCC--T-SCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEe
Confidence 356888999999998888 68888888877654
No 38
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=26.20 E-value=71 Score=24.07 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=16.6
Q ss_pred CCccceEEEEEecCCCeeeeeEE
Q 045358 166 PDGKTQVTVEYYNENGAMVPVRV 188 (200)
Q Consensus 166 PD~KsQVtv~Y~~~~~~~~p~rv 188 (200)
++||..|||.+++++| +|..|
T Consensus 6 ~~g~~yvtv~~d~d~g--~p~Ev 26 (95)
T PF12637_consen 6 GCGKLYVTVNFDEDNG--RPFEV 26 (95)
T ss_pred cccceEEEEEeeCCCC--cceEE
Confidence 7899999999986645 67664
No 39
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=25.84 E-value=81 Score=28.30 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=32.1
Q ss_pred hhcCCCCeEEEEEEeeeCe--------EEEEEEEeeceeccHHHHHHHHHHh
Q 045358 32 LAQDPDSKVACETCTKTNM--------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~--------V~v~GEitt~a~vD~~~ivR~~i~~ 75 (200)
.--||+|.||+=|+.++.. .-++|-..|. ++=+++++++++.+
T Consensus 19 ~vGd~~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TE-NlGIEKvIaNvisN 69 (238)
T TIGR01111 19 VVGDPESPVLVVTLGSHIEEQIILDAGAAIAGPCKTE-NLGIEKVVANIISN 69 (238)
T ss_pred EecCCCCceEEEEccccccccchhhcCceeecccccc-ccCHHHHHHHHhcC
Confidence 4459999999999988754 3345554443 77899999999764
No 40
>COG5086 Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=79 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHH
Q 045358 133 ETPELMPLSHVLATKLGAKLTEVRK 157 (200)
Q Consensus 133 ET~e~MPl~i~lAh~L~~rl~~~Rk 157 (200)
-||+++|.|..|-.++..|+++-|.
T Consensus 36 ~tp~LLPya~~li~r~LdrIs~q~e 60 (218)
T COG5086 36 STPRLLPYALHLIDRFLDRISEQTE 60 (218)
T ss_pred cCccccCcHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999988765
No 41
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=25.44 E-value=21 Score=29.61 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.8
Q ss_pred CCCCCCCCCcHHHHHHHHHH
Q 045358 131 TDETPELMPLSHVLATKLGA 150 (200)
Q Consensus 131 ~dET~e~MPl~i~lAh~L~~ 150 (200)
|-|.|-..|+.++|+|+|-+
T Consensus 6 CPe~Pvq~p~alYl~~~Lk~ 25 (139)
T PF09001_consen 6 CPEVPVQTPSALYLSYKLKK 25 (139)
T ss_dssp -S-STTHHHHHHHHHHHHHC
T ss_pred CCCCcchhHHHHHHHHHHHh
Confidence 88999999999999999865
No 42
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=25.23 E-value=49 Score=35.19 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=15.8
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 045358 135 PELMPLSHVLATKLGAKL 152 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl 152 (200)
..|.||+|.||.+|.+..
T Consensus 327 ~~l~pl~i~~a~~l~~~f 344 (1019)
T PRK09853 327 RALFPLSINLAAKLSREF 344 (1019)
T ss_pred CcccceeHHHHHhhHHhh
Confidence 457899999999999887
No 43
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
Probab=24.67 E-value=1.6e+02 Score=25.57 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=37.3
Q ss_pred chhhhhhHHHHHHHhhcCCCCeEEEEEEeeeC-eEEEEEEEeeceeccHH---HHHHHHHHhcC
Q 045358 18 KLCDQVSDAVLDACLAQDPDSKVACETCTKTN-MVMVFGEITTKANVDYE---KIVRDTCRSIG 77 (200)
Q Consensus 18 KicDqISDaILDa~L~~Dp~arVA~E~~v~~~-~V~v~GEitt~a~vD~~---~ivR~~i~~IG 77 (200)
|-.-|+...|.+.+-+.=.+-.|.+|+.-... .|+|.||+.+...+.+. ..+.++|...|
T Consensus 93 ~T~~el~~~I~~~L~~~~~~P~v~V~v~~~rp~~v~V~GeV~~PG~y~~~~~~~tv~~ai~~AG 156 (239)
T COG1596 93 KTLEELQSEIADRLAGYLVNPQVSVEVAQYRPQKVFVSGEVKTPGQYPLTPRGLTVLDAIALAG 156 (239)
T ss_pred CCHHHHHHHHHHHHHhhccCCCeEEEEcccCCcEEEEeeecCCCceEEecCCccHHHHHHHHcC
Confidence 33445555555554443233356666665544 59999999877665543 46888888775
No 44
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=23.90 E-value=59 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeeeCCCCCCCCCcHHHHHHHHHHHHH
Q 045358 127 FGYATDETPELMPLSHVLATKLGAKLT 153 (200)
Q Consensus 127 fGYA~dET~e~MPl~i~lAh~L~~rl~ 153 (200)
|-|+---.+--+|.|+++||+|+.|-.
T Consensus 397 ~~y~~~~~~vsip~p~~yA~~la~r~r 423 (426)
T cd04657 397 YTYARCTRSVSIPPPAYYAHLAAARAR 423 (426)
T ss_pred hcccccCCCcccchHHHHHHHHHHHHh
Confidence 345444455569999999999999864
No 45
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=23.60 E-value=1.2e+02 Score=25.48 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=30.7
Q ss_pred EEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC-CCCC
Q 045358 44 TCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGL 85 (200)
Q Consensus 44 ~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~-~~gf 85 (200)
.-+..|++++-|=-.....-|++.++|++|+--=|+++ ..|+
T Consensus 21 s~I~~Gl~vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es~k~w 63 (149)
T KOG3323|consen 21 SEIGRGLCVLVGISKDDTEEDLEKMVRKILNLRLFEDESGKGW 63 (149)
T ss_pred eeecCceEEEEEEccCCCHHHHHHHHHHHhheeeccccccCcc
Confidence 44678999999955555678999999999986556543 3444
No 46
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=22.93 E-value=65 Score=29.75 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.0
Q ss_pred eeeeCCCCCCCCCcHHHHHHHHHHHH
Q 045358 127 FGYATDETPELMPLSHVLATKLGAKL 152 (200)
Q Consensus 127 fGYA~dET~e~MPl~i~lAh~L~~rl 152 (200)
|-|+---.+--+|.|+.+||++++|.
T Consensus 366 ~~y~~~~~~vslP~p~~yA~~~a~r~ 391 (393)
T cd02826 366 LTHQNVYSPISLPAPLYYAHKLAKRG 391 (393)
T ss_pred hcccccCCCcccChHHHHHHHHHHhh
Confidence 34555555667999999999999985
No 47
>PHA01812 hypothetical protein
Probab=22.41 E-value=99 Score=24.35 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCccceEEE-EEecCCC
Q 045358 119 GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTV-EYYNENG 181 (200)
Q Consensus 119 GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KsQVtv-~Y~~~~~ 181 (200)
.-|.||++. +|.-. .-|-+.|..-+.++|.....--+---|..|.|+ +|++..|
T Consensus 55 kfgeqgviv---tddyn------vnlpnhltelikemradedvvdiinagevqftiyeyenkkg 109 (122)
T PHA01812 55 KFGEQGVIV---TDDYN------VNLPNHLTELIKEMRADEDVVDIINAGEVQFTIYEYENKKG 109 (122)
T ss_pred cccccceEE---ecCcc------cCCchHHHHHHHHHhccchHhhhcccceEEEEEEeeeccCC
Confidence 568899886 23222 222345566677777755444444568899887 6776544
No 48
>PF08401 DUF1738: Domain of unknown function (DUF1738); InterPro: IPR013610 This region is found in a number of bacterial hypothetical proteins. Some members are annotated as being similar to replication primases, and in fact this region is often found together with the Toprim domain (IPR006171 from INTERPRO).
Probab=22.40 E-value=98 Score=24.26 Aligned_cols=25 Identities=28% Similarity=0.633 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcccCCc
Q 045358 144 LATKLGAKLTEVRKNGTCPWLRPDG 168 (200)
Q Consensus 144 lAh~L~~rl~~~Rk~g~~~~lrPD~ 168 (200)
+..+++.++-+.-++|..||-+|=.
T Consensus 4 ~~~~it~~ii~~le~g~~pW~kpW~ 28 (125)
T PF08401_consen 4 IYQEITDKIIEALEKGTAPWQKPWS 28 (125)
T ss_pred HHHHHHHHHHHHHHhCCCCccCccc
Confidence 3456777777777779999988865
No 49
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.27 E-value=2.3e+02 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.318 Sum_probs=36.3
Q ss_pred cchhhhhhHHHHHHHhhcCCCCeEEEEEEee--eCeEEEEEEEeeceeccHHH--HHHHHHHhcC-CCC
Q 045358 17 DKLCDQVSDAVLDACLAQDPDSKVACETCTK--TNMVMVFGEITTKANVDYEK--IVRDTCRSIG-FTS 80 (200)
Q Consensus 17 DKicDqISDaILDa~L~~Dp~arVA~E~~v~--~~~V~v~GEitt~a~vD~~~--ivR~~i~~IG-Y~~ 80 (200)
+-+..+|.+++- .++ .+|...|-+.-++. .+.|.|.||+.....+.+.. -+.++|...| ++.
T Consensus 47 ~e~~~~I~~~l~-~~~-~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~ 113 (165)
T TIGR03027 47 TQLARDIEEKLA-KYV-RNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVGGLTD 113 (165)
T ss_pred HHHHHHHHHHHH-Hhc-cCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCc
Confidence 334455555542 223 46766666665553 57899999998765444332 3556666654 554
No 50
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=22.20 E-value=2.3e+02 Score=25.58 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=30.9
Q ss_pred eeCeEEEEEEEeeceeccHHHHHHHHHHhcC--CCCCCCCC---------CCCceEEEEeecCCChhhhhccc
Q 045358 47 KTNMVMVFGEITTKANVDYEKIVRDTCRSIG--FTSADVGL---------DADHCKVLVNIEQQSPDIAQGVH 108 (200)
Q Consensus 47 ~~~~V~v~GEitt~a~vD~~~ivR~~i~~IG--Y~~~~~gf---------d~~~~~v~~~i~~QS~dIa~gV~ 108 (200)
.|+-|+|+|-. .++.++ ++++++.|- |+-+-.-| ..+-..+++.+++-++.---|-+
T Consensus 41 GTDaImIGGS~----gvt~~~-~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq 108 (240)
T COG1646 41 GTDAIMIGGSD----GVTEEN-VDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQ 108 (240)
T ss_pred CCCEEEECCcc----cccHHH-HHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccchh
Confidence 67889999932 223222 344444443 32221111 23346788888888877655543
No 51
>PF13982 YbfN: YbfN-like lipoprotein
Probab=21.94 E-value=54 Score=25.21 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=27.2
Q ss_pred CCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHH
Q 045358 12 NEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDT 72 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~ 72 (200)
++|.||||.- .-+||+- |++++.- +.+++. | |....||+..+..+
T Consensus 22 aeG~peKv~~--CqsvLnv-lKqek~h----q~fa~~-------E--tVrvlDYQ~CIqAa 66 (89)
T PF13982_consen 22 AEGSPEKVEA--CQSVLNV-LKQEKAH----QQFASQ-------E--TVRVLDYQQCIQAA 66 (89)
T ss_pred ccCChHHHHH--HHHHHHH-HHhhHHH----Hhhhcc-------c--cchhccHHHHHHHH
Confidence 4899999854 4567776 7877621 112221 1 22356898877655
No 52
>PRK05588 histidinol-phosphatase; Provisional
Probab=21.89 E-value=70 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCCCcch---------------hhhhhHHHHHHHhhcCCCCeEEEEEEe
Q 045358 13 EGHPDKL---------------CDQVSDAVLDACLAQDPDSKVACETCT 46 (200)
Q Consensus 13 eGHPDKi---------------cDqISDaILDa~L~~Dp~arVA~E~~v 46 (200)
-||||.+ ++...+.||+++-+. .+++|+=.
T Consensus 142 lgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~----g~~lEINt 186 (255)
T PRK05588 142 LGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEK----EKVLEINT 186 (255)
T ss_pred ccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHc----CCEEEEEC
Confidence 5899955 233445566665554 56777544
No 53
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.37 E-value=2e+02 Score=21.39 Aligned_cols=49 Identities=33% Similarity=0.585 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCeEE-------EEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhc
Q 045358 25 DAVLDACLAQDPDSKVA-------CETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSI 76 (200)
Q Consensus 25 DaILDa~L~~Dp~arVA-------~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~I 76 (200)
|.+++. |++||+..|- |......-..+|-||+-+ --+-++++.++.+.|
T Consensus 17 ~~~~~~-Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~--A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 17 DQVYEK-LEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVA--AETAEELLEKIKEKI 72 (78)
T ss_pred HHHHHH-HhcCCCccEEEcChhhhCcCCCCCccEEECCEEEe--cCCHHHHHHHHHHHH
Confidence 455555 6789998764 555666778999999865 335566666666654
No 54
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=20.96 E-value=2.2e+02 Score=21.55 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCeEEEEEEeeeCeEEEEEEEeece------eccHHHHHHHHHHhc
Q 045358 35 DPDSKVACETCTKTNMVMVFGEITTKA------NVDYEKIVRDTCRSI 76 (200)
Q Consensus 35 Dp~arVA~E~~v~~~~V~v~GEitt~a------~vD~~~ivR~~i~~I 76 (200)
-|+|+ |+. .+++|+++|-+.... .-|+++=+|.+++++
T Consensus 9 ~~Ys~-av~---~g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni 52 (121)
T PF01042_consen 9 GPYSQ-AVR---AGDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNI 52 (121)
T ss_dssp SSSBS-EEE---ETTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHH
T ss_pred CCCCC-EEE---ECCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhh
Confidence 46777 666 789999999876532 457666555554444
No 55
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=20.46 E-value=39 Score=31.01 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=8.3
Q ss_pred CCCCCCcchhh
Q 045358 11 VNEGHPDKLCD 21 (200)
Q Consensus 11 V~eGHPDKicD 21 (200)
-.|||||.++=
T Consensus 125 ~~EgHpDNVap 135 (299)
T COG0083 125 EIEGHPDNVAP 135 (299)
T ss_pred HhcCCCchHHH
Confidence 35999998654
Done!