Query 045358
Match_columns 200
No_of_seqs 131 out of 1045
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 7E-101 2E-105 700.8 16.9 197 2-200 21-217 (415)
2 3iml_A S-adenosylmethionine sy 100.0 1.3E-99 5E-104 690.2 19.1 194 2-200 7-200 (399)
3 2p02_A S-adenosylmethionine sy 100.0 2E-99 7E-104 689.1 18.3 197 2-200 17-213 (396)
4 3s82_A S-adenosylmethionine sy 100.0 1.4E-99 5E-104 692.1 16.2 195 2-200 8-212 (407)
5 1p7l_A S-adenosylmethionine sy 100.0 1.4E-98 5E-103 681.4 18.9 191 3-200 2-192 (383)
6 4hpv_A S-adenosylmethionine sy 97.4 0.00018 6.3E-09 66.3 6.0 139 12-171 29-206 (407)
7 2gjh_A Designed protein; oblig 69.6 4 0.00014 27.8 3.1 38 64-101 18-55 (62)
8 2w42_A PIWI, putative uncharac 61.0 6.2 0.00021 35.8 3.7 29 135-163 384-412 (427)
9 1qys_A TOP7; alpha-beta, novel 54.0 4.9 0.00017 29.9 1.4 38 64-101 62-99 (106)
10 1kjn_A MTH0777; hypotethical p 31.0 14 0.00047 30.1 0.7 22 130-151 14-35 (157)
11 4afi_A AP-3 complex subunit de 25.3 60 0.002 26.0 3.6 48 28-78 44-91 (173)
12 2fm8_A Surface presentation of 24.6 61 0.0021 25.3 3.4 45 62-108 3-48 (135)
13 3noh_A Putative peptide bindin 23.0 45 0.0016 26.3 2.4 33 120-155 55-87 (139)
14 3b84_A Zinc finger and BTB dom 22.0 33 0.0011 24.5 1.3 44 138-195 2-45 (119)
15 3ho1_A Argonaute; argonaute, p 21.7 49 0.0017 32.3 2.8 23 133-155 647-669 (685)
16 2yhb_A QDE-2, post-transcripti 20.4 51 0.0018 29.9 2.5 22 134-155 377-398 (437)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=6.5e-101 Score=700.78 Aligned_cols=197 Identities=61% Similarity=1.005 Sum_probs=181.1
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 045358 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||.|+++|++|||||+|||+.+ ++.+++||||||||||||||||||||||||+|||||++||+++||+|.+
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999863 2345799999999999999999999999999999999999999999999
Q ss_pred CcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||+||||||+|++++|+++|+||+||||||||+++
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~ 217 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADN 217 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTT
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCC
Confidence 999999999999999876678899999999999999874
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.3e-99 Score=690.21 Aligned_cols=194 Identities=55% Similarity=0.857 Sum_probs=168.1
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 045358 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||.|+++|++|||||+|||+.+. .+.+++||||||||||||||||||||||||+|||||++||+++||+|.+
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999631 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||+||||||+|+++ +|+||+||||||||+++
T Consensus 166 ~~LrPD~KtQVTveY~~~----~P~rv~tvViStQH~~~ 200 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVDG----KPHSIDTVVLSTQHAPE 200 (399)
T ss_dssp TTEEEEEEEEEEEEEETT----EEEEEEEEEEEEEECTT
T ss_pred CeecCCCceEEEEEEECC----ceeeEEEEEEEeecCCC
Confidence 999999999999999853 89999999999999874
No 3
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=2e-99 Score=689.09 Aligned_cols=197 Identities=66% Similarity=1.059 Sum_probs=187.2
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 17 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~ 96 (396)
T 2p02_A 17 GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS 96 (396)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 045358 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||.|+++|++|||||+|||+... + .+++||||||||||||||||||||||||+|||||++||+++||+|.+
T Consensus 97 ~~gfd~~tc~Vl~~i~~QSpDIaqGV~~~~-~-~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l 174 (396)
T 2p02_A 97 SKGFDYKTCNVLVALEQQSPDIAQGVHLDR-N-EEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTL 174 (396)
T ss_dssp GGTEETTTSEEEEEEECCCHHHHHHHTTTC-C-GGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCCCceEEEEecccCChhhhhcccccc-c-ccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999531 1 13699999999999999999999999999999999999999999999
Q ss_pred CcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||||||||||+|++++|.|+|+||+|||||+||+++
T Consensus 175 ~~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~ 213 (396)
T 2p02_A 175 PWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213 (396)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSS
T ss_pred CccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCC
Confidence 999999999999999854466789999999999999874
No 4
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=1.4e-99 Score=692.08 Aligned_cols=195 Identities=57% Similarity=0.853 Sum_probs=171.7
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeec---eeccHHHHHHHHHHhcCC
Q 045358 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK---ANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~---a~vD~~~ivR~~i~~IGY 78 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++|||++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeecCCChhhhhcccCCCC-------CCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHH
Q 045358 79 TSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLT-------KRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 79 ~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~r 151 (200)
+++++|||++||.|+++|++|||||+|||+...+ +..+++||||||||||||||||||||||||+|||||++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 152 LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 152 l~~~Rk~g~~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|+++||+|.+||||||+||||||+|+++ +|+||+||||||||+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~~----~P~rv~tvViStQH~~~ 212 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFEDD----VPVRLDTVVISTQHAAD 212 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEETT----EEEEEEEEEEEEEECTT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEECC----ceeeEEEEEEEeecCCC
Confidence 9999999999999999999999999853 89999999999999874
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=1.4e-98 Score=681.39 Aligned_cols=191 Identities=60% Similarity=0.891 Sum_probs=184.0
Q ss_pred cceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCCCCCC
Q 045358 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSAD 82 (200)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 82 (200)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 045358 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCP 162 (200)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~ 162 (200)
+|||++||.|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||||++||+++||+|.+|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 235999999999999999999999999999999999999999999999
Q ss_pred cccCCccceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 045358 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 163 ~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||||+|++ | +|+||+|||||+||+++
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~ 192 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEE 192 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTT
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCC
Confidence 9999999999999985 3 89999999999999874
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00018 Score=66.29 Aligned_cols=139 Identities=23% Similarity=0.256 Sum_probs=85.6
Q ss_pred CCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEEeece---e----c
Q 045358 12 NEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACETCTK--------TNMVMVFGEITTKA---N----V 63 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~V~v~GEitt~a---~----v 63 (200)
+-||||-|||-|++++=-++ |+. |+---||-+..-+ .=.|+++|..|+.. . +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999875442 322 6655566555433 22478899887642 2 7
Q ss_pred cHHHHHH----HHHHhcCCCCCCCCCCCC-ceEEEEeecCCChhhhhcccCCCCCCCCCCCCCcccceeeeeCCCCCCCC
Q 045358 64 DYEKIVR----DTCRSIGFTSADVGLDAD-HCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELM 138 (200)
Q Consensus 64 D~~~ivR----~~i~~IGY~~~~~gfd~~-~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~M 138 (200)
.+.+|+. +.|++. --.+|.+ ...|...|.+-|+|+..-..+. ..--.|-|-....|||-
T Consensus 109 Pv~~Ia~~AAk~~l~~~-----l~~lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyAP------- 172 (407)
T 4hpv_A 109 PVGTIIIESVKEWIRNN-----FRYLDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFAP------- 172 (407)
T ss_dssp CHHHHHHHHHHHHHHHH-----CSSCCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEES-------
T ss_pred CHHHHHHHHHHHHHHHh-----cccCCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccCC-------
Confidence 7777764 444442 1124544 3677788999999987654421 11347999999999993
Q ss_pred CcHHHHHHHHHHHHH------HHHHcCCCCcccCCccce
Q 045358 139 PLSHVLATKLGAKLT------EVRKNGTCPWLRPDGKTQ 171 (200)
Q Consensus 139 Pl~i~lAh~L~~rl~------~~Rk~g~~~~lrPD~KsQ 171 (200)
|+- .-+|+..++ +++ ..+||.+.|-|.-
T Consensus 173 -lS~--~E~~Vl~~E~~Lns~~~k--~~~P~~GeDIKVM 206 (407)
T 4hpv_A 173 -LTK--LEKLVYETERHLNSKQFK--AKLPEVGEDIKVM 206 (407)
T ss_dssp -CCH--HHHHHHHHHHHHHSHHHH--HHCTTEEEEEEEE
T ss_pred -CCH--HHHHHHHHHHHhcchhhh--hhCcccCCceEEE
Confidence 322 222332222 333 3599999999974
No 7
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=69.57 E-value=4 Score=27.84 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEeecCCCh
Q 045358 64 DYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 64 D~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (200)
.+..|.-++..+.||++-..-+|.++++|.-.++.-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 46678889999999999999999999999888876653
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=61.00 E-value=6.2 Score=35.76 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 045358 135 PELMPLSHVLATKLGAKLTEVRKNGTCPW 163 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~ 163 (200)
..-+|.|+.+||+|+.++.++..-+..||
T Consensus 384 ~v~vPap~~YAhklA~l~~~~~~~~~~~~ 412 (427)
T 2w42_A 384 SRNLPVTVNYPKLVAGIIANVNRYGGYPI 412 (427)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCcCcchHhHHHHHHHHhhhhhcCCCcc
Confidence 34689999999999999999987554333
No 9
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=53.98 E-value=4.9 Score=29.87 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEeecCCCh
Q 045358 64 DYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 64 D~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (200)
.+..|.-++..+.||++-..-||.++++|.-.++.-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46678889999999999999999999999888776654
No 10
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=30.96 E-value=14 Score=30.06 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.0
Q ss_pred eCCCCCCCCCcHHHHHHHHHHH
Q 045358 130 ATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 130 A~dET~e~MPl~i~lAh~L~~r 151 (200)
-|-|.|-..|+.++|+|+|-++
T Consensus 14 GCPE~Pvq~p~~lYl~~~Lk~~ 35 (157)
T 1kjn_A 14 GCPESPVQIPLAIYTSHKLKKK 35 (157)
T ss_dssp CCSCSTTHHHHHHHHHHHHHHT
T ss_pred cCCCCcchhhHHHHHHHHHHhc
Confidence 4999999999999999999776
No 11
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=25.33 E-value=60 Score=25.96 Aligned_cols=48 Identities=4% Similarity=-0.033 Sum_probs=34.9
Q ss_pred HHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeceeccHHHHHHHHHHhcCC
Q 045358 28 LDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 28 LDa~L~~Dp~arVA~E~~v~~~~V~v~GEitt~a~vD~~~ivR~~i~~IGY 78 (200)
+|.+|++|-+-- .+=.+|..|.++|+ |-++. .-|+..++|++|+++.=
T Consensus 44 ~~~y~~~~~~M~-I~Ya~VArg~tiLA-E~t~~-~gnf~~va~~iL~kip~ 91 (173)
T 4afi_A 44 SDQYVKLEEAMA-ILFAVVARGTTILA-KHAWC-GGNFLEVTEQILAKIPS 91 (173)
T ss_dssp CSSEEESSCCCC-EEEEEEEETTEEEE-EEESS-CCCHHHHHHHHHTTSCS
T ss_pred hhHHHhhhcccc-EEEEEEECCCEEEE-EccCC-CCCHHHHHHHHHHhCCC
Confidence 567777776554 45566788888876 55543 35899999999999853
No 12
>2fm8_A Surface presentation of antigens protein SPAK; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=24.62 E-value=61 Score=25.32 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=34.2
Q ss_pred eccHHHHHHHHHHhcCCCCC-CCCCCCCceEEEEeecCCChhhhhccc
Q 045358 62 NVDYEKIVRDTCRSIGFTSA-DVGLDADHCKVLVNIEQQSPDIAQGVH 108 (200)
Q Consensus 62 ~vD~~~ivR~~i~~IGY~~~-~~gfd~~~~~v~~~i~~QS~dIa~gV~ 108 (200)
++|+.+++|+++.++|-.+. --++|.-+ +|...++ -.|+|.-...
T Consensus 3 ~~di~~Lv~~~L~~~Gc~~~li~~Ld~HS-tI~L~l~-d~P~I~I~~~ 48 (135)
T 2fm8_A 3 HLDIAELVRSALEVSGCDPSLIGGIDSHS-TIVLDLF-ALPSICISVK 48 (135)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGBCCCCSSS-EEEEEES-SSCCEEEEEE
T ss_pred cchHHHHHHHHHHHcCCChhHhhccCCcC-cEEeecC-CCCCeeEEec
Confidence 47999999999999995543 22366655 8888888 7899976654
No 13
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=23.01 E-value=45 Score=26.34 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCcccceeeeeCCCCCCCCCcHHHHHHHHHHHHHHH
Q 045358 120 AGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 120 AGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~ 155 (200)
-||.-+-|-.+..||+ -|| +.+|.+|++||+..
T Consensus 55 ~tdtel~~~l~v~etd--y~L-~~YA~~Lc~RL~~A 87 (139)
T 3noh_A 55 RTDTELSFDIYVSETD--YAL-IRYADSLCERLNDA 87 (139)
T ss_dssp CCSSCCEEEEEEETTC--HHH-HHHHHHHHHHHHHT
T ss_pred ccccceeeEEEEeccc--hHH-HHHHHHHHHHHHhc
Confidence 4566677888888888 567 88999999999765
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=22.02 E-value=33 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcccCCccceEEEEEecCCCeeeeeEEeEEEEee
Q 045358 138 MPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLIST 195 (200)
Q Consensus 138 MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KsQVtv~Y~~~~~~~~p~rv~tiviS~ 195 (200)
||.+ ..+..|...|.++|++|.+. | |++.-+ | +.+++|..|+++
T Consensus 2 ~~~~-~h~~~l~~~l~~l~~~~~~~----D----v~l~v~---~--~~f~aHk~vLaa 45 (119)
T 3b84_A 2 MSFV-QHSVRVLQELNKQREKGQYC----D----ATLDVG---G--LVFKAHWSVLAC 45 (119)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHTCSC----C----EEEEET---T--EEEEECHHHHHH
T ss_pred cccc-hHHHHHHHHHHHHHhcCCCc----c----eEEEEC---C--EEEEeeHHHHhh
Confidence 4555 45778899999999998765 5 666542 2 568888777654
No 15
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=21.72 E-value=49 Score=32.28 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHH
Q 045358 133 ETPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 133 ET~e~MPl~i~lAh~L~~rl~~~ 155 (200)
....-+|.|+.+||+++++++.+
T Consensus 647 ~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 647 FAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcChHHHHHHHHHHHHHHh
Confidence 36677999999999999988877
No 16
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=20.36 E-value=51 Score=29.93 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 045358 134 TPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 134 T~e~MPl~i~lAh~L~~rl~~~ 155 (200)
.+--+|.|.++||++++|....
T Consensus 377 ~sVsipaP~yYAh~~a~R~r~~ 398 (437)
T 2yhb_A 377 KAVSICPPAYYADLVCDRARIH 398 (437)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHH
Confidence 3455899999999999986544
Done!