RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045358
(200 letters)
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 160 bits (407), Expect = 5e-52
Identities = 70/106 (66%), Positives = 85/106 (80%)
Query: 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET KT M+++ GEIT++A
Sbjct: 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61
Query: 63 VDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 108
VDY+K+VR+ + IG+ + G D C VLV +EQQSPDIAQGVH
Sbjct: 62 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 146 bits (370), Expect = 1e-46
Identities = 64/100 (64%), Positives = 77/100 (77%)
Query: 4 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANV 63
LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET KT MV+V GEITT A V
Sbjct: 3 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWV 62
Query: 64 DYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDI 103
D E+I R+T R IG+ +D+G DA+ C VL I +QSPDI
Sbjct: 63 DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 127 bits (321), Expect = 9e-39
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
E+IGAGDQG MFGYATDET E MPL+ VLA KL AKL E+R+NGT PWLRPD KTQVTV+
Sbjct: 3 EDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQ 62
Query: 176 YYNENGAMVPVRVHTVLISTQHDE 199
Y + GA++P+RVHT++IS QHDE
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDE 86
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 119 bits (299), Expect = 2e-35
Identities = 46/87 (52%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 113 KRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQV 172
P E GAGDQG MFGYAT+ET LMP A +L + EVRKNGT PWLRPD K+QV
Sbjct: 2 ADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQV 61
Query: 173 TVEYYNENGAMVPVRVHTVLISTQHDE 199
T +Y + V + V++STQH E
Sbjct: 62 TFQYDDGK----IVGIDAVVLSTQHSE 84
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 28.7 bits (64), Expect = 0.32
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 22 QVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEI-TTKANVDYEKIVRDTCRSIGFTS 80
Q C A C+ T VF I T + + C +
Sbjct: 63 QFKVVGAAKCFAFLGKGTTDCKDTDHT----VFNLIPTNTGAFLIKDALLGFCIT-SHDF 117
Query: 81 ADVGLD---ADHCKVLVNIEQQ 99
D+ L+ ++ Q
Sbjct: 118 DDLKLEPCGGSVSGRTFSLAYQ 139
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 56
Score = 25.7 bits (56), Expect = 0.83
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 14 GHPDKLCDQVSDAVLDACLAQDPDS 38
G K ++ +D VLD L +D
Sbjct: 15 GFAAKQAEEATDQVLDGELGKDGAV 39
>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 107
Score = 26.3 bits (58), Expect = 1.3
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFT 79
CD VS V D A D K V V E+ +V + CR+
Sbjct: 6 CDSVSVWVGDKTTATD----------IKGKEVTVLAEVNINNSVFRQYFFETKCRASNPV 55
Query: 80 -SADVGLDADH 89
S G+D+ H
Sbjct: 56 ESGCRGIDSKH 66
>d1twfh_ b.40.4.8 (H:) RNA polymerase subunit RBP8 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 145
Score = 25.8 bits (57), Expect = 2.8
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 54 FGEITTKANVD---YEKIVRDTCRSIGFTSADVGLDADHCKVLVNIE 97
F +I + VD Y K+ R S + LD +N+E
Sbjct: 5 FDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLD-------INVE 44
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.9 bits (56), Expect = 4.1
Identities = 13/77 (16%), Positives = 26/77 (33%)
Query: 30 ACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADH 89
L DPD +A + +T + ++K + G + V ++ D
Sbjct: 314 VALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDF 373
Query: 90 CKVLVNIEQQSPDIAQG 106
V I+ + D+
Sbjct: 374 FDVHQWIKNEGVDLLIS 390
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 26.0 bits (57), Expect = 4.2
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 10 SVNEGHPDKLCDQVSDAVLDACL--AQDPDSKVACE-TCTKTNMVMVFGEITTKANVDYE 66
SV HP V++A L ++ KV E T N V FG T D+
Sbjct: 18 SVCSAHPL---------VIEAALAFDRNSTRKVLIEATS---NQVNQFGGYTGMTPADFR 65
Query: 67 KIVRDTCRSIGFTSADVGLDADHC 90
+ V +GF + L DH
Sbjct: 66 EFVFAIADKVGFARERIILGGDHL 89
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 25.7 bits (56), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 154 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVR 187
E+ + P+ + G T VE+ N N A+ P R
Sbjct: 15 EILNSPGYPFWKRQG-TMAAVEWCNTNYAL-PTR 46
>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 24.4 bits (53), Expect = 5.6
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIG-F 78
CD S V D A D + + V V GEI T+ + + C+
Sbjct: 7 CDSESLWVTDKSSAID----------IRGHQVTVLGEIKTQNSPVKQYFYETRCKEARPV 56
Query: 79 TSADVGLDADH 89
+ G+D H
Sbjct: 57 KNGCRGIDDKH 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 731,661
Number of extensions: 32398
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 13
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)