Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>045359
LHRTTSSPPPLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQRWIRE
RESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAEK
EKFEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFS
TGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPA
LGLKVSAYY

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045359
        (249 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119475 - symbol:PTAC5 "plastid transcriptiona...   317  1.9e-28   1


>TAIR|locus:2119475 [details] [associations]
            symbol:PTAC5 "plastid transcriptionally active 5"
            species:3702 "Arabidopsis thaliana" [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0031072 "heat shock protein binding" evidence=IEA] [GO:0051082
            "unfolded protein binding" evidence=IEA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009295 "nucleoid" evidence=IDA]
            [GO:0009508 "plastid chromosome" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] InterPro:IPR001305
            InterPro:IPR002477 Pfam:PF01471 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009941 GO:GO:0008152 GO:GO:0009535
            SUPFAM:SSF47090 Gene3D:2.10.230.10 SUPFAM:SSF57938
            Gene3D:1.10.101.10 GO:GO:0009508 EMBL:BT029541 IPI:IPI00537075
            RefSeq:NP_193103.2 UniGene:At.33352 ProteinModelPortal:A1A6M1
            SMR:A1A6M1 PaxDb:A1A6M1 PRIDE:A1A6M1 EnsemblPlants:AT4G13670.1
            GeneID:827001 KEGG:ath:AT4G13670 TAIR:At4g13670 eggNOG:NOG288829
            HOGENOM:HOG000116609 InParanoid:A1A6M1 OMA:WLREEQR PhylomeDB:A1A6M1
            ProtClustDB:CLSN2690906 Genevestigator:A1A6M1 Uniprot:A1A6M1
        Length = 387

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 80/173 (46%), Positives = 103/173 (59%)

Query:    72 KLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAXXXXXXXXXXXXX 131
             +L+I++LE+RN   G S+   DTISNIA LLQ+LKEKN I+E    A             
Sbjct:    90 QLRIQSLESRNSQLGNSIP--DTISNIAALLQVLKEKNRISESGLSATPMVLESTREQIV 147

Query:   132 XXXXXXXXXXXXXA----------------LRVGSEGEDVKAMQEELLKLGFFSSEEDME 175
                                           L+VGSEG+DV+A+QE LLKLGF+S EEDME
Sbjct:   148 EEVEEEEKRVIIAEEKVRVSEPVKKIKRRILKVGSEGDDVQALQEALLKLGFYSGEEDME 207

Query:   176 YSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQK 228
             +SSFS+GT  AVKTWQA+ GV EDG+MT+ELL+RL+M+  VE TD +  +  K
Sbjct:   208 FSSFSSGTASAVKTWQASLGVREDGVMTAELLQRLFMDEDVE-TDKDEASTMK 259

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/87 (63%), Positives = 71/87 (81%)

Query:   146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
             L+VGSEG+DV+A+QE LLKLGF+S EEDME+SSFS+GT  AVKTWQA+ GV EDG+MT+E
Sbjct:   178 LKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAE 237

Query:   206 LLERLYMEHRVE-DTD--TNMNADQKG 229
             LL+RL+M+  VE D D  + M  ++ G
Sbjct:   238 LLQRLFMDEDVETDKDEASTMKKEEAG 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       183   0.00076  110 3  10 23  0.36    33
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  184 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.98u 0.12s 20.10t   Elapsed:  00:00:01
  Total cpu time:  19.98u 0.12s 20.10t   Elapsed:  00:00:01
  Start:  Sat May 11 14:08:02 2013   End:  Sat May 11 14:08:03 2013

Back to top