BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045359
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FET|B Chain B, Catalytic Domain Of Germination-Specific Lytic
           Tansglycosylase Sleb From Bacillus Anthracis
 pdb|4FET|A Chain A, Catalytic Domain Of Germination-Specific Lytic
           Tansglycosylase Sleb From Bacillus Anthracis
          Length = 222

 Score = 33.9 bits (76), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           ++ G+ GEDV  +Q  L   GF++ + D     F  GT  A++ +Q   G+  DG+  ++
Sbjct: 7   IQRGASGEDVIELQSRLKYNGFYTGKVD---GVFGWGTYWALRNFQEKFGLPVDGLAGAK 63

Query: 206 LLERLYMEHRVEDTDTN 222
             + L    + + +  N
Sbjct: 64  TKQXLVKATKYDKSTAN 80


>pdb|1LBU|A Chain A, Hydrolase Metallo (zn) Dd-peptidase
          Length = 213

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           L  GS GE V+ +Q  +       ++  ++   F   T+ AV+ +Q+A G+  DGI    
Sbjct: 10  LSEGSSGEAVRQLQIRVAGYPGTGAQLAID-GQFGPATKAAVQRFQSAYGLAADGIAGPA 68

Query: 206 LLERLYMEHRVEDTDT 221
              ++Y   +++D D 
Sbjct: 69  TFNKIY---QLQDDDC 81


>pdb|4G54|A Chain A, Crystal Structure Of A Periplasmic Domain Of The Epsab
           Fusion Protein Of The Vibrio Vulnificus Type Ii
           Secretion System
          Length = 258

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           LR+G  GE ++ + + L K     ++E ++ + F+    + V+ +Q  + +TEDGI    
Sbjct: 138 LRLGMHGEAIEVLDQLLAK---ALNDEPLKTTQFNAELMQRVEWFQRWQAMTEDGIAGQR 194

Query: 206 LLERLYMEHRV 216
            L RL  +H V
Sbjct: 195 TLARL--QHMV 203


>pdb|3V08|A Chain A, Crystal Structure Of Equine Serum Albumin
 pdb|4F5T|A Chain A, Crystal Structure Of Equine Serum Albumin
 pdb|4F5U|A Chain A, Crystal Structure Of Equine Serum Albumin At 2.04
           Resolution
          Length = 583

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 157 AMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAK 194
           A++E +L     S++E ++ SSF    ERAVK W  A+
Sbjct: 183 ALKERIL---LSSAKERLKCSSFQNFGERAVKAWSVAR 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.125    0.333 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,549,064
Number of Sequences: 62578
Number of extensions: 131496
Number of successful extensions: 183
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 6
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)