Query 045359
Match_columns 249
No_of_seqs 230 out of 1392
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01471 PG_binding_1: Putativ 99.6 8E-15 1.7E-19 103.0 6.9 57 151-210 1-57 (57)
2 TIGR02869 spore_SleB spore cor 99.4 4.2E-13 9E-18 117.8 8.7 71 142-215 3-73 (201)
3 PRK10594 murein L,D-transpepti 99.0 3.1E-10 6.8E-15 113.8 5.0 85 142-226 231-356 (608)
4 COG3409 Putative peptidoglycan 98.9 1.8E-09 4E-14 90.0 6.8 71 142-215 35-107 (185)
5 COG2989 Uncharacterized protei 98.8 2.8E-09 6.1E-14 105.2 4.8 102 141-245 227-328 (561)
6 COG3409 Putative peptidoglycan 98.3 9.9E-07 2.2E-11 73.5 6.4 63 146-211 121-184 (185)
7 PF08823 PG_binding_2: Putativ 98.1 7.9E-06 1.7E-10 61.8 6.1 58 150-210 13-74 (74)
8 COG3023 ampD N-acetyl-anhydrom 97.3 0.00044 9.6E-09 63.4 5.7 56 152-212 197-253 (257)
9 PF09374 PG_binding_3: Predict 96.1 0.0054 1.2E-07 45.9 3.2 27 185-211 1-31 (72)
10 PF02344 Myc-LZ: Myc leucine z 82.5 3.6 7.8E-05 26.6 4.3 29 53-81 2-30 (32)
11 KOG1565 Gelatinase A and relat 80.8 2.8 6E-05 41.8 5.2 59 154-212 29-87 (469)
12 PF09374 PG_binding_3: Predict 80.7 1.7 3.8E-05 32.3 2.9 29 154-187 2-30 (72)
13 COG3926 zliS Lysozyme family p 71.0 4.4 9.5E-05 37.2 3.3 17 229-245 175-191 (252)
14 PF08232 Striatin: Striatin fa 53.8 18 0.00038 30.1 3.7 22 59-80 18-39 (134)
15 COG4458 SrfC Uncharacterized p 41.7 30 0.00065 36.3 3.8 93 142-247 177-314 (821)
16 PF11336 DUF3138: Protein of u 39.5 62 0.0013 32.6 5.4 20 62-81 28-47 (514)
17 COG3926 zliS Lysozyme family p 35.4 39 0.00084 31.2 3.1 37 152-193 94-130 (252)
18 PF11932 DUF3450: Protein of u 33.8 1.8E+02 0.0039 26.1 7.2 46 36-81 26-71 (251)
19 COG1828 PurS Phosphoribosylfor 29.5 43 0.00094 26.1 2.1 25 145-169 9-33 (83)
20 KOG3119 Basic region leucine z 28.9 4.6E+02 0.01 24.1 9.2 38 41-79 212-249 (269)
21 PF12808 Mto2_bdg: Micro-tubul 27.6 45 0.00097 23.8 1.8 26 54-79 10-35 (52)
22 PF08232 Striatin: Striatin fa 26.9 1.3E+02 0.0028 25.0 4.7 31 51-81 17-47 (134)
23 PF11336 DUF3138: Protein of u 25.5 48 0.001 33.3 2.2 21 176-196 144-164 (514)
24 PF04508 Pox_A_type_inc: Viral 24.7 46 0.001 20.1 1.2 15 67-81 2-16 (23)
25 COG4312 Uncharacterized protei 23.7 1.2E+02 0.0025 28.2 4.1 30 55-84 16-47 (247)
26 PF08898 DUF1843: Domain of un 23.7 93 0.002 22.4 2.8 24 58-81 30-53 (53)
27 PF05988 DUF899: Bacterial pro 21.9 1.3E+02 0.0027 27.4 3.9 23 56-78 11-33 (211)
28 PF06305 DUF1049: Protein of u 21.9 1.3E+02 0.0027 21.2 3.3 23 56-78 45-67 (68)
29 PF02700 PurS: Phosphoribosylf 21.1 96 0.0021 23.6 2.6 25 145-169 8-32 (80)
No 1
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=99.56 E-value=8e-15 Score=103.00 Aligned_cols=57 Identities=39% Similarity=0.595 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHH
Q 045359 151 EGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERL 210 (249)
Q Consensus 151 ~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L 210 (249)
+|++|..+|..|..+||+.+..||. ||..|..||+.||+.+||++||++|..||.+|
T Consensus 1 ~~~~v~~lq~~L~~~gy~~~~~~g~---~~~~t~~Av~~fQ~~~gL~~tG~~d~~T~~~L 57 (57)
T PF01471_consen 1 SGPDVKALQQYLNRLGYYPGPVDGI---FDPETREAVKAFQKANGLPVTGVVDPETWEAL 57 (57)
T ss_dssp BSHHHHHHHHHHHHTTTT-SSTTSB---SHHHHHHHHHHHHHHTTS-SSSSBCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCCCCCC---cCHHHHHHHHHHHHHcCcCCCCccCHHHHhcC
Confidence 4789999999999999999999998 89999999999999999999999999999987
No 2
>TIGR02869 spore_SleB spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.
Probab=99.43 E-value=4.2e-13 Score=117.85 Aligned_cols=71 Identities=28% Similarity=0.390 Sum_probs=66.3
Q ss_pred cCcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359 142 KRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR 215 (249)
Q Consensus 142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~ 215 (249)
..++|+.|+.+++|.+||++|..+||+.+.+||. ||..|..||+.||+++||++||++|..||.+|+....
T Consensus 3 ~~~~l~~G~~g~~V~~LQ~~L~~lG~~~g~idG~---fg~~T~~AV~~FQ~~~GL~~dG~vg~~T~~~L~~~~~ 73 (201)
T TIGR02869 3 AVQTYQRGSTGSDVIEIQRRLKAWGYYNGKVDGV---FGWLTYWAVRKFQSKNGLTVDGIVGPKTKAALGIATT 73 (201)
T ss_pred CcccCCCCCCcHHHHHHHHHHHHcCCCCCCCCCc---cCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHhCCccc
Confidence 3468999999999999999999999999999998 9999999999999999999999999999999976544
No 3
>PRK10594 murein L,D-transpeptidase; Provisional
Probab=99.00 E-value=3.1e-10 Score=113.79 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=69.8
Q ss_pred cCcccCCCCChHHHHHHHHHHHHcCCCCCCC---------CC--------------------------------ccCCCC
Q 045359 142 KRKALRVGSEGEDVKAMQEELLKLGFFSSEE---------DM--------------------------------EYSSFS 180 (249)
Q Consensus 142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~v---------DG--------------------------------~~~~Fd 180 (249)
....|++|+.+++|..|.++|...|+..... ++ ....||
T Consensus 231 ~~~~LrpG~~~~~V~~LR~RL~~~G~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~YD 310 (608)
T PRK10594 231 GKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYD 310 (608)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 4568999999999999999999999874210 00 012499
Q ss_pred HHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccCccccccCCCcc
Q 045359 181 TGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNAD 226 (249)
Q Consensus 181 ~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~~~~~~~~~n~~ 226 (249)
..+.+|||.||+.|||.+||+||+.|+.+||.+...++....+|+.
T Consensus 311 ~~Lv~AVK~FQ~rhGL~~DGvIG~~T~~~LNvs~~~R~~~l~lNmE 356 (608)
T PRK10594 311 NELVEAVKRFQAWQGLGADGVIGPRTRDWLNVTPAQRAGVLALNIQ 356 (608)
T ss_pred HHHHHHHHHHHHHcCCCCCcCcCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777666666654
No 4
>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=1.8e-09 Score=90.03 Aligned_cols=71 Identities=27% Similarity=0.430 Sum_probs=65.0
Q ss_pred cCcccCCCCChHHHHHHHHHHHHcCCCC-CCCCCccCCCCHHHHHHHHHHHHHcCC-CCCcccCHHHHHHHhhccC
Q 045359 142 KRKALRVGSEGEDVKAMQEELLKLGFFS-SEEDMEYSSFSTGTERAVKTWQAAKGV-TEDGIMTSELLERLYMEHR 215 (249)
Q Consensus 142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~-g~vDG~~~~Fd~~T~~AVK~FQk~~GL-~~DGiVG~~T~~~L~~~~~ 215 (249)
.......+..++.|..||..|+.+||+. +.+||. ||+.|..||+.||+.+|| .+||++|+.|+.+|.....
T Consensus 35 ~~~~~~~~~~~~~v~~lq~~L~~~g~~~~~~~dg~---~g~~t~~av~~fQ~~~gl~~~dG~~g~~t~~al~~~~~ 107 (185)
T COG3409 35 IDPVLTLGAEGPSVRILQAALNALGYYPDGVIDGV---YGPETAAAVRAFQQKNGLSPVDGIVGPATRAALPSQLK 107 (185)
T ss_pred cccccccCCCCchHHHHHHHHHhcCCCCCCCccCc---cCcccHHHHHHHhhhcCcccccccccHHHHHHHHHHhh
Confidence 3456677789999999999999999999 999999 899999999999999999 8999999999999988553
No 5
>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=2.8e-09 Score=105.19 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=80.8
Q ss_pred ccCcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccCccccc
Q 045359 141 KKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTD 220 (249)
Q Consensus 141 ~~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~~~~~~ 220 (249)
+....|++|.++++|..|.++|...|-+.....+....||+.+..|||+||+.|||++||+||+.|+.+|+.+.+.+...
T Consensus 227 ~~~~~LrpG~~~~~v~aL~~~L~~~~~d~~~a~~~s~~yd~el~~avKrfQ~~~GL~~DGviG~~T~~aLn~s~~~Rl~~ 306 (561)
T COG2989 227 PAGALLRPGVTSPDVPALRARLARSGMDLPSAAGSSPAYDPELVEAVKRFQARHGLPADGVIGPATRAALNVSVQIRLAQ 306 (561)
T ss_pred CCccccCCCCCchhHHHHHHHHHhcCccchhhccCcccccHHHHHHHHHHHHHhCCCCCCcccHHHHHHhccCHHHHHHH
Confidence 45678999999999999999999999543233333245999999999999999999999999999999999988888888
Q ss_pred cCCCcccCCcccccccCCCcCCccc
Q 045359 221 TNMNADQKGIIQTIPRKNPALGLKV 245 (249)
Q Consensus 221 ~~~n~~~k~~~q~~~~~~~~~g~~v 245 (249)
...|+.. ...+|.-.+..|-+|
T Consensus 307 l~~n~eR---lR~lP~dl~~r~i~V 328 (561)
T COG2989 307 LALNLQR---LRWLPGDLGQRGIMV 328 (561)
T ss_pred HHHHHHH---HhhCccccCCceEEE
Confidence 8877753 334444444444443
No 6
>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=9.9e-07 Score=73.54 Aligned_cols=63 Identities=37% Similarity=0.441 Sum_probs=58.3
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCCC-CCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHh
Q 045359 146 LRVGSEGEDVKAMQEELLKLGFFSSE-EDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLY 211 (249)
Q Consensus 146 Lk~Gd~G~~V~~LQ~~L~~LGy~~g~-vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~ 211 (249)
...+..+..+..+|..+...||+.+. +||+ ||..|..+|+.||+.+||.+||++|..||..|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~---fg~~t~~~v~~~q~~~~l~~dgi~g~~t~~~l~ 184 (185)
T COG3409 121 PGLGLGGGDVATLQQPLPLLGYRSGIRVDGI---FGPQTEAAVKAFQRQYGLTVDGIVGPQTWAALR 184 (185)
T ss_pred cCccccccchHHHHHHHHhcccccCCCCCCc---ccHHHHHHHHHHHHHhCCCCCeeecHHHHHHhh
Confidence 44578899999999999999999876 9998 999999999999999999999999999999985
No 7
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=98.11 E-value=7.9e-06 Score=61.80 Aligned_cols=58 Identities=28% Similarity=0.583 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcC----CCCCcccCHHHHHHH
Q 045359 150 SEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKG----VTEDGIMTSELLERL 210 (249)
Q Consensus 150 d~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~G----L~~DGiVG~~T~~~L 210 (249)
..++.+..||..|..+|||.+.++|. ||.+|.+|++.|+...+ +..||.||+.++.-|
T Consensus 13 l~~~~~~evq~~L~~lGyy~g~~~g~---~d~a~~~Al~~~~g~ENfE~R~~~~~~ID~~VL~~L 74 (74)
T PF08823_consen 13 LDGDVAREVQEALKRLGYYKGEADGV---WDEATEDALRAWAGTENFEERIRGDGKIDPVVLAYL 74 (74)
T ss_pred CcHHHHHHHHHHHHHcCCccCCCCCc---ccHHHHHHHHHHHHHhhHHhhcCCCCccCHHHHhhC
Confidence 46889999999999999999999999 89999999999998776 478898999988653
No 8
>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.00044 Score=63.40 Aligned_cols=56 Identities=30% Similarity=0.332 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCC-CCCcccCHHHHHHHhh
Q 045359 152 GEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGV-TEDGIMTSELLERLYM 212 (249)
Q Consensus 152 G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL-~~DGiVG~~T~~~L~~ 212 (249)
+..|..||..|...||... . |. ||..|+.+|+.||..++- ..||+.|.+|...|..
T Consensus 197 ~~~v~~lq~~L~~YGY~v~-~-~~---~d~~t~~vv~aFQ~hfrp~~~dg~~d~et~a~l~a 253 (257)
T COG3023 197 GEDVAALQEMLARYGYGVE-I-GV---FDQETQQVVRAFQMHFRPGLYDGEADVETIAILQA 253 (257)
T ss_pred cCCHHHHHHHHHHhCcCCC-c-ch---hhHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHH
Confidence 3999999999999999984 4 77 899999999999999975 6999999999887764
No 9
>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain. ; PDB: 2IKB_B 2IS5_A 2NR7_A.
Probab=96.13 E-value=0.0054 Score=45.89 Aligned_cols=27 Identities=44% Similarity=0.551 Sum_probs=18.9
Q ss_pred HHHHHHHHHcC----CCCCcccCHHHHHHHh
Q 045359 185 RAVKTWQAAKG----VTEDGIMTSELLERLY 211 (249)
Q Consensus 185 ~AVK~FQk~~G----L~~DGiVG~~T~~~L~ 211 (249)
.|||..|+..| +.+||+||+.|+.+|.
T Consensus 1 rAik~LQ~alg~~~~v~~DG~iGp~Tl~Al~ 31 (72)
T PF09374_consen 1 RAIKFLQRALGLGADVAVDGIIGPKTLAALN 31 (72)
T ss_dssp HHHHHHHHHHT----S--SS--SHHHHHHHH
T ss_pred CHHHHHHHHHccCCccCCCCCcCHHHHHHHh
Confidence 47888888888 8888888888888883
No 10
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=82.46 E-value=3.6 Score=26.64 Aligned_cols=29 Identities=38% Similarity=0.574 Sum_probs=23.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045359 53 EEQRWIRERESLLREISELKLQIKALENR 81 (249)
Q Consensus 53 ~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 81 (249)
||+|-..|-+.|.+..+.|+..++.|.|+
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888999999999999999999876
No 11
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=80.81 E-value=2.8 Score=41.80 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359 154 DVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM 212 (249)
Q Consensus 154 ~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~ 212 (249)
.+..++..|...||.....-...+..+..+.+|++.||.-.||.++|.+|..|+..|..
T Consensus 29 ~~~~~~~yl~~~~y~~~~~~~~~~~~~~~~~~al~~~q~~~~l~~tG~lD~~Tl~~m~~ 87 (469)
T KOG1565|consen 29 DKVALQDYLECYGYLPPTDLTATRASQNVLEDALKMMQDFFGLPVTGKLDNATLALMNK 87 (469)
T ss_pred chhHHHHHhhhcccCCCccccccccCchhhHHHHHhhhhhcCccccCCcchhhhhhccC
Confidence 67788999999999874321111124889999999999999999999999999997765
No 12
>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain. ; PDB: 2IKB_B 2IS5_A 2NR7_A.
Probab=80.75 E-value=1.7 Score=32.33 Aligned_cols=29 Identities=21% Similarity=-0.031 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHH
Q 045359 154 DVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAV 187 (249)
Q Consensus 154 ~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AV 187 (249)
.|+.||+.|. .|....+||. +|+.|..|+
T Consensus 2 Aik~LQ~alg--~~~~v~~DG~---iGp~Tl~Al 30 (72)
T PF09374_consen 2 AIKFLQRALG--LGADVAVDGI---IGPKTLAAL 30 (72)
T ss_dssp HHHHHHHHHT------S--SS-----SHHHHHHH
T ss_pred HHHHHHHHHc--cCCccCCCCC---cCHHHHHHH
Confidence 5889999996 3444589999 899999999
No 13
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=71.02 E-value=4.4 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=11.0
Q ss_pred CcccccccCCCcCCccc
Q 045359 229 GIIQTIPRKNPALGLKV 245 (249)
Q Consensus 229 ~~~q~~~~~~~~~g~~v 245 (249)
+.+|.+|.-.+..|++|
T Consensus 175 ~~~~p~~~~~~~~~ka~ 191 (252)
T COG3926 175 QVPQPAPFPNGGQGKAV 191 (252)
T ss_pred cCCCCCCCCCCCCCCce
Confidence 55666666666666665
No 14
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.79 E-value=18 Score=30.12 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 045359 59 RERESLLREISELKLQIKALEN 80 (249)
Q Consensus 59 ~~~~~~~~e~~~~~~~~~~~~~ 80 (249)
++|..|..|++.|+.+|..||+
T Consensus 18 rdR~~WeiERaEmkarIa~LEG 39 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEG 39 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 4556666666666666666553
No 15
>COG4458 SrfC Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=41.72 E-value=30 Score=36.32 Aligned_cols=93 Identities=25% Similarity=0.170 Sum_probs=61.1
Q ss_pred cCcccCCCCChHHHHHHHHHHHHc--CCCCCCCCCccCC------------------------CCHHHHH----------
Q 045359 142 KRKALRVGSEGEDVKAMQEELLKL--GFFSSEEDMEYSS------------------------FSTGTER---------- 185 (249)
Q Consensus 142 ~~~~Lk~Gd~G~~V~~LQ~~L~~L--Gy~~g~vDG~~~~------------------------Fd~~T~~---------- 185 (249)
..+.+.+|-..++|..||..+... |-.....+|.|+. |++-|..
T Consensus 177 rsp~~vpGvn~eDV~diqd~fa~~~~g~~~~~l~gayW~~aa~LaPyLsI~dRA~lfSlLWGe~~elTd~yl~lAh~Lq~ 256 (821)
T COG4458 177 RSPVAVPGVNEEDVWDIQDYFAKQFAGMPNIELLGAYWEEAAILAPYLSIADRAELFSLLWGEFGELTDVYLELAHALQK 256 (821)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHhccccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 356788899999999999966543 3222233444321 3332221
Q ss_pred ---------HHHHHHHHcCCCCCcccCHHHHHHHhhccCccccccCCCcccCCcccccccCCCcCCccccc
Q 045359 186 ---------AVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPALGLKVSA 247 (249)
Q Consensus 186 ---------AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~~~~~~~~~n~~~k~~~q~~~~~~~~~g~~v~~ 247 (249)
-+...=.+.||+++||++..|+..|+.... +.+.+-|.+.+.+|.+||+
T Consensus 257 lg~a~~lyapLsalVd~t~lpA~simnv~tL~~lgtp~d-------------e~i~VrP~kgg~~~~aVsL 314 (821)
T COG4458 257 LGHAKDLYAPLSALVDRTGLPARSIMNVETLLGLGTPGD-------------EEILVRPMKGGRLLPAVSL 314 (821)
T ss_pred hCCchhhcccHHHhccccccchhhhhhHHHHhccCCCCc-------------CceeeeeccCCccCcceee
Confidence 122222355788999999999988876554 5667888888888888875
No 16
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=39.51 E-value=62 Score=32.61 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 045359 62 ESLLREISELKLQIKALENR 81 (249)
Q Consensus 62 ~~~~~e~~~~~~~~~~~~~~ 81 (249)
+.|++|+.+|+.|+.+||..
T Consensus 28 ~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 28 KALQAQLQALQDQVNELRAK 47 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777654
No 17
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=35.41 E-value=39 Score=31.24 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHH
Q 045359 152 GEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAA 193 (249)
Q Consensus 152 G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~ 193 (249)
+..+++||+.|... +...+||. .|..|..||+++-..
T Consensus 94 ~rAa~~LQkal~~~--~~v~~DGv---IG~~TLaAl~~~~~~ 130 (252)
T COG3926 94 GRAAKWLQKALGPA--YTVRVDGV---IGAQTLAALKKDPAN 130 (252)
T ss_pred chHHHHHHHHhccC--CcccccCc---ccHHHHHHHHhccch
Confidence 56777888887654 44577887 788888888877543
No 18
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.85 E-value=1.8e+02 Score=26.07 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045359 36 WLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENR 81 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 81 (249)
.....+.|...++.==.+...|..|++.|..|+..|..|+..|+..
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888777766777889999999999999999999888644
No 19
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=29.50 E-value=43 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=23.3
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCC
Q 045359 145 ALRVGSEGEDVKAMQEELLKLGFFS 169 (249)
Q Consensus 145 ~Lk~Gd~G~~V~~LQ~~L~~LGy~~ 169 (249)
+||.|.-.+.-..++..|..+||..
T Consensus 9 ~lK~~VlDPqG~ti~~aL~~lg~~~ 33 (83)
T COG1828 9 TLKPGVLDPEGETIEKALHRLGYNE 33 (83)
T ss_pred EeCCcccCchhHHHHHHHHHcCCcc
Confidence 6899999999999999999999983
No 20
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.91 E-value=4.6e+02 Score=24.15 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 045359 41 QRWLREEQRWLREEQRWIRERESLLREISELKLQIKALE 79 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~ 79 (249)
.|=.++.+.|.|-..- -+|.+.|.+++..|+.+|..|-
T Consensus 212 ~~k~~~~e~~~r~~~l-eken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAEL-EKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554332 3566666677777777665553
No 21
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.57 E-value=45 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 045359 54 EQRWIRERESLLREISELKLQIKALE 79 (249)
Q Consensus 54 ~~r~~~~~~~~~~e~~~~~~~~~~~~ 79 (249)
|.+|.+||+.=..+..+...+|..|+
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~ 35 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLE 35 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHH
Confidence 77888888776666666667776664
No 22
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=26.86 E-value=1.3e+02 Score=24.99 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045359 51 LREEQRWIRERESLLREISELKLQIKALENR 81 (249)
Q Consensus 51 ~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 81 (249)
=|+-..|.-||..|.+.|+.|.-+...+|+-
T Consensus 17 ErdR~~WeiERaEmkarIa~LEGE~r~~e~l 47 (134)
T PF08232_consen 17 ERDRNQWEIERAEMKARIAFLEGERRGQENL 47 (134)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778899999999999999988887776654
No 23
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.54 E-value=48 Score=33.33 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=12.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCC
Q 045359 176 YSSFSTGTERAVKTWQAAKGV 196 (249)
Q Consensus 176 ~~~Fd~~T~~AVK~FQk~~GL 196 (249)
|++|++..=.++.+|+|..|.
T Consensus 144 Y~Y~NS~fG~~ylDikK~~~~ 164 (514)
T PF11336_consen 144 YNYDNSTFGDAYLDIKKTFGV 164 (514)
T ss_pred cccccccccceeEEeeeccCC
Confidence 344555555666666666653
No 24
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.72 E-value=46 Score=20.08 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhcc
Q 045359 67 EISELKLQIKALENR 81 (249)
Q Consensus 67 e~~~~~~~~~~~~~~ 81 (249)
|+..|+.+|..||++
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566667777766654
No 25
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.71 E-value=1.2e+02 Score=28.16 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=22.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--hccCCC
Q 045359 55 QRWIRERESLLREISELKLQIKAL--ENRNLS 84 (249)
Q Consensus 55 ~r~~~~~~~~~~e~~~~~~~~~~~--~~~~~~ 84 (249)
+.|++-|++||++.-+|.+.+.+| |+|.++
T Consensus 16 e~w~~AR~~lL~kEkeLtR~rd~vaaeRR~LP 47 (247)
T COG4312 16 EEWLAAREALLAKEKELTRARDAVAAERRALP 47 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357788889998888888888776 555543
No 26
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=23.70 E-value=93 Score=22.42 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 045359 58 IRERESLLREISELKLQIKALENR 81 (249)
Q Consensus 58 ~~~~~~~~~e~~~~~~~~~~~~~~ 81 (249)
+.+...+....+.|+.||..||.|
T Consensus 30 L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 30 LAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HccchHHHHHHHHHHHHHHHHhcC
Confidence 345667778888899999999975
No 27
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=21.92 E-value=1.3e+02 Score=27.39 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 045359 56 RWIRERESLLREISELKLQIKAL 78 (249)
Q Consensus 56 r~~~~~~~~~~e~~~~~~~~~~~ 78 (249)
-|++.|+.|+++..+|.+++.+|
T Consensus 11 ew~~Ar~~LL~~EKeltR~~dal 33 (211)
T PF05988_consen 11 EWLAARDALLAREKELTRARDAL 33 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888888776
No 28
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.87 E-value=1.3e+02 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 045359 56 RWIRERESLLREISELKLQIKAL 78 (249)
Q Consensus 56 r~~~~~~~~~~e~~~~~~~~~~~ 78 (249)
|++++-.++.+|++.+..++++|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566667777777777777654
No 29
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=21.13 E-value=96 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.3
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCC
Q 045359 145 ALRVGSEGEDVKAMQEELLKLGFFS 169 (249)
Q Consensus 145 ~Lk~Gd~G~~V~~LQ~~L~~LGy~~ 169 (249)
.+|+|...+.-..++..|..+||..
T Consensus 8 ~~K~gvlDPqG~ai~~al~~lG~~~ 32 (80)
T PF02700_consen 8 TLKPGVLDPQGEAIKRALHRLGYDG 32 (80)
T ss_dssp EE-TTS--HHHHHHHHHHHHTT-TT
T ss_pred EECCCCcCcHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999984
Done!