Query 045359
Match_columns 249
No_of_seqs 230 out of 1392
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkh_A Phikz144, lytic transgl 99.5 4.4E-14 1.5E-18 127.1 8.9 70 143-215 9-78 (268)
2 1lbu_A Muramoyl-pentapeptide c 99.5 6.3E-14 2.2E-18 120.9 7.7 68 144-214 8-77 (213)
3 4fet_B Spore cortex-lytic enzy 99.4 7E-15 2.4E-19 129.8 0.0 70 143-215 4-73 (222)
4 3d2y_A N-acetylmuramoyl-L-alan 99.0 4.6E-10 1.6E-14 100.6 6.3 60 148-212 193-253 (261)
5 1l6j_A Matrix metalloproteinas 97.1 0.00052 1.8E-08 65.7 5.5 58 153-213 21-78 (425)
6 1slm_A Stromelysin-1; hydrolas 97.0 0.00071 2.4E-08 60.2 5.3 59 154-212 13-72 (255)
7 1eak_A 72 kDa type IV collagen 96.9 0.0016 5.3E-08 62.3 7.0 54 154-213 15-69 (421)
8 2ikb_A Hypothetical protein NM 96.4 0.0027 9.4E-08 53.5 4.3 32 182-213 89-120 (167)
9 1su3_A Interstitial collagenas 96.3 0.0033 1.1E-07 60.0 5.0 63 151-213 8-71 (450)
10 1ck7_A Protein (gelatinase A); 96.1 0.0069 2.4E-07 60.5 6.1 54 153-212 16-70 (631)
11 2nr7_A Secretion activator pro 95.9 0.005 1.7E-07 53.3 3.7 29 184-212 103-131 (195)
12 1lbu_A Muramoyl-pentapeptide c 80.1 0.55 1.9E-05 39.7 1.3 49 163-213 124-175 (213)
13 3ra3_B P2F; coiled coil domain 45.4 31 0.0011 20.5 3.7 19 61-79 9-27 (28)
14 2ikb_A Hypothetical protein NM 39.1 23 0.00078 29.4 3.4 30 152-190 91-120 (167)
15 4dzn_A Coiled-coil peptide CC- 38.1 35 0.0012 20.9 3.2 15 64-78 7-21 (33)
16 1a93_A Coiled coil, LZ, MYC pr 37.6 48 0.0016 20.9 3.9 26 53-78 8-33 (34)
17 2nr7_A Secretion activator pro 36.6 30 0.001 29.5 3.9 33 146-189 99-131 (195)
18 4ath_A MITF, microphthalmia-as 26.9 1.2E+02 0.004 22.6 5.2 21 61-81 58-78 (83)
19 3he5_B Synzip2; heterodimeric 22.2 91 0.0031 20.8 3.4 23 59-81 24-46 (52)
20 1nkp_A C-MYC, MYC proto-oncoge 20.5 1.3E+02 0.0045 22.0 4.4 25 56-80 63-87 (88)
No 1
>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*
Probab=99.49 E-value=4.4e-14 Score=127.13 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=66.3
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359 143 RKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR 215 (249)
Q Consensus 143 ~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~ 215 (249)
.++|+.|++|++|..||.+|+.+||+.+.+||. ||+.|++||+.||+++||++||+||+.||.+|+....
T Consensus 9 ~~~l~~G~~g~~V~~lQ~~L~~~Gy~~g~~DG~---fg~~T~~AV~~FQ~~~gL~~dGivg~~T~~~L~~~~~ 78 (268)
T 3bkh_A 9 MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGI---FGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYS 78 (268)
T ss_dssp SCCBCTTCBSHHHHHHHHHHHTTTCCCCSCCSB---CCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHCC
T ss_pred cccCcCCCchHHHHHHHHHHHHcCCCCCCCCCc---cCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhhc
Confidence 467999999999999999999999999999999 9999999999999999999999999999999987554
No 2
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=99.47 E-value=6.3e-14 Score=120.92 Aligned_cols=68 Identities=28% Similarity=0.391 Sum_probs=63.5
Q ss_pred cccCCCCChHHHHHHHHHHHHcCCCC--CCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhcc
Q 045359 144 KALRVGSEGEDVKAMQEELLKLGFFS--SEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEH 214 (249)
Q Consensus 144 ~~Lk~Gd~G~~V~~LQ~~L~~LGy~~--g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~ 214 (249)
+.|++|++|++|..||.+|+.+||+. +.+||. ||+.|++||++||+++||++||++|+.||.+|+...
T Consensus 8 ~~l~~G~~g~~V~~lQ~~L~~~~~~~~~~~~dG~---fg~~t~~AV~~FQ~~~gL~~dG~vg~~T~~~L~~~~ 77 (213)
T 1lbu_A 8 GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQ---FGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQ 77 (213)
T ss_dssp SCBCTTCBSHHHHHHHHHTTTCSCTTCCCCCSSB---CCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHB
T ss_pred ccCCCCCccHHHHHHHHHHHhcCCcCCCCCCCCC---cCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHh
Confidence 47999999999999999999999873 688998 999999999999999999999999999999998754
No 3
>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis}
Probab=99.45 E-value=7e-15 Score=129.84 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=0.0
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359 143 RKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR 215 (249)
Q Consensus 143 ~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~ 215 (249)
.++|++|++|++|..||.+|+.+||+.+.+||. ||+.|++||+.||+++||++||++|+.||.+|+....
T Consensus 4 ~~~L~~G~~g~~V~~lQ~~L~~lGy~~g~~DG~---fG~~T~~AV~~FQ~~~GL~~DGivg~~T~~aL~~~~~ 73 (222)
T 4fet_B 4 NQVIQRGASGEDVIELQSRLKYNGFYTGKVDGV---FGWGTYWALRNFQEKFGLPVDGLAGAKTKQMLVKATK 73 (222)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCcccCCCCcHHHHHHHHHHHHcCCCCCCCCCC---cCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhccc
Confidence 468999999999999999999999999999999 8999999999999999999999999999999987553
No 4
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=98.98 E-value=4.6e-10 Score=100.63 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHc-CCCCCcccCHHHHHHHhh
Q 045359 148 VGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAK-GVTEDGIMTSELLERLYM 212 (249)
Q Consensus 148 ~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~-GL~~DGiVG~~T~~~L~~ 212 (249)
.|+.+++|..||.+|+.+||+. +||. ||..|++||++||+++ |+.+||++|++|+..|..
T Consensus 193 ~~~~g~~v~~lq~~L~~~GY~~--~dg~---~~~~t~~aV~aFQ~~~r~l~~dGi~d~~T~~~L~~ 253 (261)
T 3d2y_A 193 APHTPVDTASLLELLARYGYDV--KPDM---TPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEA 253 (261)
T ss_dssp CTTCBCCHHHHHHHHHHHTCCC--CSSC---CHHHHHHHHHHHHHHHCTTCCSCCCBHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCC--CCCc---cCHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 4788999999999999999997 8998 9999999999999999 999999999999999975
No 5
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=97.07 E-value=0.00052 Score=65.69 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359 153 EDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME 213 (249)
Q Consensus 153 ~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~ 213 (249)
.++...|..|...||........ ++..++.||+.||+.+||+++|++|..|+..|...
T Consensus 21 ~~~~~a~~yL~~yGYl~~~~~~~---~~~~l~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P 78 (425)
T 1l6j_A 21 TDRQLAEEYLYRYGYTRVAEMRG---ESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP 78 (425)
T ss_dssp CHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC
T ss_pred ccHHHHHHHHHHcCCCCCccccc---chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence 34666799999999987432223 57889999999999999999999999999999873
No 6
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=96.99 E-value=0.00071 Score=60.24 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcc-CCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359 154 DVKAMQEELLKLGFFSSEEDMEY-SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM 212 (249)
Q Consensus 154 ~V~~LQ~~L~~LGy~~g~vDG~~-~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~ 212 (249)
++..+|..|...||......... ..++..+..||+.||+-+||+++|++|..|+..|..
T Consensus 13 ~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~ 72 (255)
T 1slm_A 13 SMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRK 72 (255)
T ss_dssp ---CHHHHHHHHSCCCCC---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTS
T ss_pred hHHHHHHHHHHcCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence 37889999999999964322110 026889999999999999999999999999998875
No 7
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=96.89 E-value=0.0016 Score=62.33 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHHHHHHHHH-cCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359 154 DVKAMQEELLK-LGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME 213 (249)
Q Consensus 154 ~V~~LQ~~L~~-LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~ 213 (249)
++...|..|.. .||.... + ++..++.||+.||+-+||+++|++|..|+..|...
T Consensus 15 ~~~~a~~yL~~~yGyl~~~-~-----~~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P 69 (421)
T 1eak_A 15 DKELAVQYLNTFYGCPKES-C-----NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 69 (421)
T ss_dssp HHHHHHHHHHHHTCCCSSC-C-----CHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC
T ss_pred cHHHHHHHHHHhcCCCCCC-C-----chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence 56677999999 9998632 2 47899999999999999999999999999999873
No 8
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=96.37 E-value=0.0027 Score=53.49 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359 182 GTERAVKTWQAAKGVTEDGIMTSELLERLYME 213 (249)
Q Consensus 182 ~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~ 213 (249)
....|||.||+..||.+||+||+.|+.+|+..
T Consensus 89 G~~~Avk~lQ~~lgl~~DGiiGp~Tl~al~~~ 120 (167)
T 2ikb_A 89 GYGNAARMLQRAAGVPDDGVIGAVSLKAINSL 120 (167)
T ss_dssp CHHHHHHHHHHHTTSCCSSCCCHHHHHHHHHS
T ss_pred cHHHHHHHHHHHcCCCcCCCcCHHHHHHHHhc
Confidence 46789999999999999999999999999964
No 9
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=96.32 E-value=0.0033 Score=60.02 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCcc-CCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359 151 EGEDVKAMQEELLKLGFFSSEEDMEY-SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME 213 (249)
Q Consensus 151 ~G~~V~~LQ~~L~~LGy~~g~vDG~~-~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~ 213 (249)
...++..+|..|...||......+.. ..++..+..||+.||+-.||+++|+++..|+..|...
T Consensus 8 ~~~~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~p 71 (450)
T 1su3_A 8 QEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP 71 (450)
T ss_dssp -----CHHHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC
T ss_pred chhhHHHHHHHHHHhCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCC
Confidence 34567888999999999964222210 0157789999999999999999999999999998763
No 10
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=96.09 E-value=0.0069 Score=60.46 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHH-cCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359 153 EDVKAMQEELLK-LGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM 212 (249)
Q Consensus 153 ~~V~~LQ~~L~~-LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~ 212 (249)
.++..+|..|.. .||.... + ++..++.||+.||+.+||+++|++|..|+..|..
T Consensus 16 ~~~~~~~~yL~~~ygyl~~~-~-----~~~~~~~al~~~Q~~~gL~~TG~lD~~T~~~m~~ 70 (631)
T 1ck7_A 16 TDKELAVQYLNTFYGCPKES-C-----NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRK 70 (631)
T ss_dssp CHHHHHHHHHHHHTCCCTTT-C-----SHHHHHHHHHHHHHHHTCCSCSSCCHHHHHHTTS
T ss_pred ccHHHHHHHHHHhcCCCCCC-C-----chHHHHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence 356677999998 9998632 1 4789999999999999999999999999999886
No 11
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=95.90 E-value=0.005 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359 184 ERAVKTWQAAKGVTEDGIMTSELLERLYM 212 (249)
Q Consensus 184 ~~AVK~FQk~~GL~~DGiVG~~T~~~L~~ 212 (249)
..||+.||+.+||.+||+||+.|+.+|+.
T Consensus 103 ~~Avk~LQr~lgl~~DGiiGp~TlaAl~~ 131 (195)
T 2nr7_A 103 KYGIVIPQRILGVQADGIVGNKTLQAVNS 131 (195)
T ss_dssp THHHHHHHHHHTSCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCcCHHHHHHHHc
Confidence 67999999999999999999999999996
No 12
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=80.08 E-value=0.55 Score=39.67 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=37.3
Q ss_pred HHcCCCCCCCCCccCCCCHHHHHHH---HHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359 163 LKLGFFSSEEDMEYSSFSTGTERAV---KTWQAAKGVTEDGIMTSELLERLYME 213 (249)
Q Consensus 163 ~~LGy~~g~vDG~~~~Fd~~T~~AV---K~FQk~~GL~~DGiVG~~T~~~L~~~ 213 (249)
..+|+....+++.| -.+.+-++| +.||..+|+.+|++|+..|+..|...
T Consensus 124 ~~~g~~~i~V~sgy--R~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~~~~l~~~ 175 (213)
T 1lbu_A 124 HAMGDKPITVNGGF--RSVTCNSNVGGASNSRHMYGHAADLGAGSQGFCALAQA 175 (213)
T ss_dssp HHTTSCCCCEEECC--CCHHHHHHHTCCTTCGGGGTCEEEECCTTTCHHHHHHH
T ss_pred HhcCCCCeEecccc--CCHHHccccCCCCCCCCCCceEeeeCCCCcCHHHHHHH
Confidence 36785455667662 345666777 89999999999999999999888664
No 13
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.38 E-value=31 Score=20.45 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 045359 61 RESLLREISELKLQIKALE 79 (249)
Q Consensus 61 ~~~~~~e~~~~~~~~~~~~ 79 (249)
-.+|..||++|.-+|.+||
T Consensus 9 narlkqeiaaleyeiaale 27 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 4578889999999998886
No 14
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=39.07 E-value=23 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHH
Q 045359 152 GEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTW 190 (249)
Q Consensus 152 G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~F 190 (249)
+..|+.||+.|. ..+||. +|+.|..|++.+
T Consensus 91 ~~Avk~lQ~~lg------l~~DGi---iGp~Tl~al~~~ 120 (167)
T 2ikb_A 91 GNAARMLQRAAG------VPDDGV---IGAVSLKAINSL 120 (167)
T ss_dssp HHHHHHHHHHTT------SCCSSC---CCHHHHHHHHHS
T ss_pred HHHHHHHHHHcC------CCcCCC---cCHHHHHHHHhc
Confidence 358899999883 358999 899999999976
No 15
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=38.12 E-value=35 Score=20.89 Aligned_cols=15 Identities=53% Similarity=0.643 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 045359 64 LLREISELKLQIKAL 78 (249)
Q Consensus 64 ~~~e~~~~~~~~~~~ 78 (249)
|..||++|+.+|.+|
T Consensus 7 lkqeiaalkkeiaal 21 (33)
T 4dzn_A 7 LKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 16
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=37.55 E-value=48 Score=20.87 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045359 53 EEQRWIRERESLLREISELKLQIKAL 78 (249)
Q Consensus 53 ~~~r~~~~~~~~~~e~~~~~~~~~~~ 78 (249)
+|++=+.|.+.+......|+..|+.|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777888877765
No 17
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=36.57 E-value=30 Score=29.52 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHH
Q 045359 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKT 189 (249)
Q Consensus 146 Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~ 189 (249)
+--| +..|+.||+.|. ..+||. +|+.|.+|++.
T Consensus 99 VN~G--~~Avk~LQr~lg------l~~DGi---iGp~TlaAl~~ 131 (195)
T 2nr7_A 99 WGSG--KYGIVIPQRILG------VQADGI---VGNKTLQAVNS 131 (195)
T ss_dssp HHHB--THHHHHHHHHHT------SCCCSC---CCHHHHHHHHH
T ss_pred hhch--HHHHHHHHHHhC------CCcCCC---cCHHHHHHHHc
Confidence 3446 789999999975 368999 89999999996
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.92 E-value=1.2e+02 Score=22.64 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 045359 61 RESLLREISELKLQIKALENR 81 (249)
Q Consensus 61 ~~~~~~e~~~~~~~~~~~~~~ 81 (249)
..++-..-..|..+|+.||..
T Consensus 58 ~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 58 QKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 455666677899999999854
No 19
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.22 E-value=91 Score=20.79 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 045359 59 RERESLLREISELKLQIKALENR 81 (249)
Q Consensus 59 ~~~~~~~~e~~~~~~~~~~~~~~ 81 (249)
+.++-|..=|++|+.+|..||+.
T Consensus 24 rdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 24 RDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHHH
Confidence 44566777789999999999876
No 20
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.53 E-value=1.3e+02 Score=21.99 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 045359 56 RWIRERESLLREISELKLQIKALEN 80 (249)
Q Consensus 56 r~~~~~~~~~~e~~~~~~~~~~~~~ 80 (249)
+=..+-+.|..+...|+.+|+.|++
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334456678888888888888865
Done!