BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045360
         (544 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V1Y|B Chain B, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
           Binding Domain (Abd) In A Complex With The Ish2 Domain
           From P85 Alpha
          Length = 170

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 273 LDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI----EECSRE 328
           ++++ KK  KY+     K REY+ L +E    SQE+  K   ++ F ++I    E+C  +
Sbjct: 12  IEAVGKKLHKYNTQFQEKSREYDRLYEEYTRTSQEIQXKRTAIEAFNETIKIFEEQCQTQ 71

Query: 329 FQVKKEELSSIKSEIVECSDEVELKRNELNLIQHASNKL 367
            +  KE +   K E     +E E++R     I H  +KL
Sbjct: 72  ERYSKEYIEKFKRE----GNEKEIQR-----IXHNYDKL 101


>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha And The Drug Wortmannin
 pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha
          Length = 373

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 273 LDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI----EECSRE 328
           ++++ KK  +Y+     K REY+ L +E    SQE+  K   ++ F ++I    E+C  +
Sbjct: 121 IEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQ 180

Query: 329 FQVKKEELSSIKSEIVECSDEVELKRNELNLIQHASNKLQ 368
            +  KE +   K E     +E E++R     I H  +KL+
Sbjct: 181 ERYSKEYIEKFKRE----GNEKEIQR-----IMHNYDKLK 211


>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
 pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
           P85alpha And The Inhibitor Pik-108
          Length = 279

 Score = 29.6 bits (65), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 273 LDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI----EECSRE 328
           ++++ KK  +Y+     K REY+ L +E    SQE+  K   ++ F ++I    E+C  +
Sbjct: 121 IEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQ 180

Query: 329 FQVKKEELSSIKSEIVECSDEVELKRNELNLIQHASNKLQ 368
            +  KE +   K E     +E E++R     I H  +KL+
Sbjct: 181 ERYSKEYIEKFKRE----GNEKEIQR-----IMHNYDKLK 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,842,327
Number of Sequences: 62578
Number of extensions: 421915
Number of successful extensions: 1565
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 119
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)