BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045360
(544 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing protein DDB_G0290503
OS=Dictyostelium discoideum GN=DDB_G0290503 PE=4 SV=1
Length = 1492
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 178 KLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLEC 237
K ++ LVE E SK+ + ++E E +LK+ E S E + L ++KL
Sbjct: 905 KQNKINELVENNESSSDELQSKLIQLSDQLQEKENQLKSFESSIIERDEKLNQLQSKLNE 964
Query: 238 KKKEL----ERTQSSIKELLSFRRRVRRRENE----VESIERELDSMKKKQKKYSDDIGM 289
K+ E+ E QSS+ EL S + ++NE +E+ + LD ++ K + ++I
Sbjct: 965 KQNEIDQITENNQSSLDELQS---NLNEKQNEINQLIENNQSSLDELQSKLNEKLNEINE 1021
Query: 290 KEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDE 349
K+ + N L + E LS++ SK E +E + K ++ + S+I++ + +
Sbjct: 1022 KDNKINELIQTNESLSKDQQSK----------FENLEQELEEKNNKILDLNSQIIDVNHQ 1071
Query: 350 VELKRNELNLIQ 361
K NELN +Q
Sbjct: 1072 FSEKENELNQLQ 1083
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1 SV=2
Length = 1790
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 20/154 (12%)
Query: 157 KMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKA 216
++ LLK LE + K+ E+ + EE E ++A + +++ E E +L+
Sbjct: 1055 QISLLKEKLETATTANDENVNKISELTKTREELEAELA-------AYKNLKNELETKLET 1107
Query: 217 KEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSM 276
EK+ EVK++ E L+ +K +LE+ + K+ L+ R +ES+E+E + +
Sbjct: 1108 SEKALKEVKEN----EEHLKEEKIQLEKEATETKQQLNSLRA------NLESLEKEHEDL 1157
Query: 277 KKKQKKYSDDIGMKEREYNGLKKEVEDLSQELAS 310
+ KKY + I KER+YN +E+ L+ E+ S
Sbjct: 1158 AAQLKKYEEQIANKERQYN---EEISQLNDEITS 1188
>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1
Length = 1972
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 121/266 (45%), Gaps = 56/266 (21%)
Query: 185 LVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLR--------------- 229
L EE EK L K S +SMI E E LK +EKS E++K R
Sbjct: 1015 LAEEEEKAKNLTKLK-SKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIAD 1073
Query: 230 ----LCETKLECKKKE------LERTQSSIKELLSFRRRVRRRENEVESIERELDS---M 276
+ E K++ KKE L R I + + +++R E + ++ +LDS
Sbjct: 1074 LQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAA 1133
Query: 277 KKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKL-------LKIFKKSIEECSREF 329
+ K +K D+G E LK E+ED A++ +L + + KK+++E +R
Sbjct: 1134 RNKAEKQKRDLG---EELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSH 1190
Query: 330 QVKKEELSSIKSEIV-ECSDEVE-LKRNELNLIQHASNKLQFDLIQTME------IGYLR 381
+ + +E+ ++ V E ++++E KR + NL + QT+E G LR
Sbjct: 1191 EAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSK---------QTLEKENADLAGELR 1241
Query: 382 ELKEKEKLFDSLKKGLEDRFQDLEVK 407
L + ++ + KK LE + QDL+ K
Sbjct: 1242 VLGQAKQEVEHKKKKLEVQLQDLQSK 1267
>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2
Length = 3210
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 32/219 (14%)
Query: 265 EVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEE 324
EVE+++ +++ M + K + D+ E L K++++ +L+ DKLL FK +EE
Sbjct: 2279 EVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLLEE 2338
Query: 325 CSR-EFQVKKEELSSIK---------SEIVE--CSDEVELKRNELNL------------- 359
+ E Q+K+E ++++ +E V C D+ +K E +L
Sbjct: 2339 KEQAEIQIKEESKTAVEMLQNQLKELNEAVAALCGDQEIMKATEQSLDPPIEEEHQLRNS 2398
Query: 360 IQHASNKLQFDLIQTMEIGYLRELKEKEKLFDSLKKGLEDRFQDLEVKERLFEKRVKDFE 419
I+ +L+ D + ++ L++LKE E D LK +E+ ++LE+ E + E
Sbjct: 2399 IEKLRARLEAD--EKKQLCVLQQLKESEHHADLLKGRVENLERELEIARTNQEHAALEAE 2456
Query: 420 IREKEFDSIRKTVEGQG---KNLELQVKI--EEQENLTS 453
+ E ++++ +EG + LEL V E+ENLT+
Sbjct: 2457 NSKGEVETLKAKIEGMTQSLRGLELDVVTIRSEKENLTN 2495
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair Rad50 ATPase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rad50 PE=3 SV=1
Length = 880
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 109 VQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKC 168
++++I + EL K SE+N +S L R EL V+E+V + + K+ LK +EK
Sbjct: 195 IEELIKANEDELTKKLSEINEISSKLPPIRGELEKVRENVKELESIKGKISELKIQVEKL 254
Query: 169 CDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSL 228
+ E+K+ +++R +EE K +KIS ++ ++++ +L+ KEK Y ++K
Sbjct: 255 KGRKKGLEEKIVQIERSIEE-------KKAKISELEEIVKDI-PKLQEKEKEYRKLKGFR 306
Query: 229 RLCETKLECKKKELERTQSSIKEL 252
E+KL +KEL + +S +K +
Sbjct: 307 DEYESKLRRLEKELSKWESELKAI 330
>sp|B3LFU6|SP110_YEAS1 Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=SPC110 PE=3 SV=1
Length = 944
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 85/153 (55%), Gaps = 6/153 (3%)
Query: 168 CCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSM-IEEYEEELKAKEKSYDEVKK 226
C +E E E+KL E++R ++ + Q+ L+ S +QS+ + E+ELK +E+K
Sbjct: 225 CIEEREQMERKLAELERKLKTVKDQV-LELENNSDVQSLKLRSKEDELKNLMNELNELKS 283
Query: 227 SLRLCETKLECKKKELERTQSSIKELL----SFRRRVRRRENEVESIERELDSMKKKQKK 282
+ +T+LE KK EL + + + EL ++++++NE + ++ EL+ ++ K ++
Sbjct: 284 NAEEKDTQLEFKKNELRKRTNELNELKIKSDEMDLQLKQKQNESKRLKDELNELETKFRE 343
Query: 283 YSDDIGMKEREYNGLKKEVEDLSQELASKDKLL 315
KE E LK ++ +L +E+++K+ L
Sbjct: 344 NGSQSSAKENELKMLKNKIAELEEEISTKNSQL 376
>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3
Length = 1972
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 55/247 (22%)
Query: 204 QSMIEEYEEELKAKEKSYDEVKKSLR-------------------LCETKLECKKKE--- 241
+SMI E E LK +EKS E++K R + E K++ KKE
Sbjct: 1033 ESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEEL 1092
Query: 242 ---LERTQSSIKELLSFRRRVRRRENEVESIERELDS---MKKKQKKYSDDIGMKEREYN 295
L R I + + +++R E + ++ +LDS + K +K D+G E
Sbjct: 1093 QAALARLDDEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLG---EELE 1149
Query: 296 GLKKEVED------LSQEL-ASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIV-ECS 347
LK E+ED QEL A +++ + + KK+++E +R + + +E+ ++ V E +
Sbjct: 1150 ALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHAQAVEELT 1209
Query: 348 DEVE-LKRNELNLIQHASNKLQFDLIQTME------IGYLRELKEKEKLFDSLKKGLEDR 400
+++E KR + NL + NK QT+E G LR L + ++ + KK LE +
Sbjct: 1210 EQLEQFKRAKANLDK---NK------QTLEKENADLAGELRVLGQAKQEVEHKKKKLEAQ 1260
Query: 401 FQDLEVK 407
Q+L+ K
Sbjct: 1261 VQELQSK 1267
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2
Length = 1972
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 47/243 (19%)
Query: 204 QSMIEEYEEELKAKEKSYDEVKKSLR-------------------LCETKLECKKKE--- 241
+SMI E E LK +EKS E++K R + E K++ KKE
Sbjct: 1033 ESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQLAKKEEEL 1092
Query: 242 ---LERTQSSIKELLSFRRRVRRRENEVESIERELDS---MKKKQKKYSDDIGMKEREYN 295
L R + + + +++R E + ++ +LDS + K +K D+G E
Sbjct: 1093 QAALARLEDETSQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLG---EELE 1149
Query: 296 GLKKEVED------LSQEL-ASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIV-ECS 347
LK E+ED QEL A +++ + + KK+++E +R + + +E+ +++V E +
Sbjct: 1150 ALKTELEDTLDTTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQVVEELT 1209
Query: 348 DEVE-LKRNELNL--IQHASNKLQFDLIQTMEIGYLRELKEKEKLFDSLKKGLEDRFQDL 404
+++E KR + NL + K DL G LR L + ++ + KK LE + Q+L
Sbjct: 1210 EQLEQFKRAKANLDKTKQTLEKENADL-----AGELRVLGQAKQEVEHKKKKLEVQLQEL 1264
Query: 405 EVK 407
+ K
Sbjct: 1265 QSK 1267
>sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized transglycosylase YomI
OS=Bacillus subtilis (strain 168) GN=yomI PE=3 SV=2
Length = 2285
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 291 EREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEI------- 343
E+ ++ KK+++ L + + D + +FK S ++ + + + LSS+KSE+
Sbjct: 1010 EKAFDNAKKDLQSLLETYSKSDSSIDVFKMSFDKAQKNIKDGDKSLSSVKSEVGDLGETL 1069
Query: 344 VECSDEVE---------LKRNELNLIQHA----SNKLQFDLIQ 373
E +E E L N ++ I+ A S+ +QFD +Q
Sbjct: 1070 AEAGNEAEDFGKKLKEALDANSVDDIKAAIKEMSDAMQFDSVQ 1112
>sp|Q1HPU0|TPM1_BOMMO Tropomyosin-1 OS=Bombyx mori PE=1 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 137/291 (47%), Gaps = 26/291 (8%)
Query: 36 VLKFTVQWKDLEKHFDLGKK-SLEKQSNDVDMKIMLLDQRAKEIESK----ESDLVLVEE 90
+K +Q LEK + K + E+Q+ D +++ +++ +E++ K E DL+L +
Sbjct: 3 AIKKKMQAMKLEKDNAMDKADTCEQQARDANLRAEKVNEEVRELQKKLAQVEEDLILNKN 62
Query: 91 RIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESV-- 148
++++ N +L K+K+L + + + ++Q E +L +++L Q+S
Sbjct: 63 KLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSGTAQQKLLEAQQSADE 122
Query: 149 ---------NNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSK 199
N Q D+++M+ L N L++ E + K EV R + E ++ + + +
Sbjct: 123 NNRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDR 182
Query: 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRV 259
+ S + I E EEELK S KSL + E K +R + K+L + ++
Sbjct: 183 VKSGDAKISELEEELKVVGNSL----KSLEVSEEKAN------QRVEEFKKQLKTLTGKL 232
Query: 260 RRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELAS 310
+ E E E+ + ++K+ + D++G+ + Y L E++ ELA
Sbjct: 233 KEAEARAEYAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAG 283
>sp|A6ZYV5|SP110_YEAS7 Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
YJM789) GN=SPC110 PE=3 SV=1
Length = 944
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 168 CCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSM-IEEYEEELKAKEKSYDEVKK 226
C +E E E+KL E++R ++ + Q+ L+ S +QS+ + E+ELK +E+K
Sbjct: 225 CIEEREQMERKLAELERKLKTVKDQV-LELENNSDVQSLKLRSKEDELKNLMNELNELKS 283
Query: 227 SLRLCETKLECKKKELERTQSSIKELL----SFRRRVRRRENEVESIERELDSMKKKQKK 282
+ +T+LE KK EL + + + EL ++++++NE + ++ EL+ ++ K +
Sbjct: 284 NAEEKDTQLEFKKNELRKRTNELNELKIKSDEMDLQLKQKQNESKRLKDELNELETKFSE 343
Query: 283 YSDDIGMKEREYNGLKKEVEDLSQELASKDKLL 315
KE E LK ++ +L +E+++K+ L
Sbjct: 344 NGSQSSAKENELKMLKNKIAELEEEISTKNSQL 376
>sp|P32380|SP110_YEAST Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPC110 PE=1 SV=1
Length = 944
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 168 CCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSM-IEEYEEELKAKEKSYDEVKK 226
C +E E E+KL E++R ++ + Q+ L+ S +QS+ + E+ELK +E+K
Sbjct: 225 CIEEREQMERKLAELERKLKTVKDQV-LELENNSDVQSLKLRSKEDELKNLMNELNELKS 283
Query: 227 SLRLCETKLECKKKELERTQSSIKELL----SFRRRVRRRENEVESIERELDSMKKKQKK 282
+ +T+LE KK EL + + + EL ++++++NE + ++ EL+ ++ K +
Sbjct: 284 NAEEKDTQLEFKKNELRKRTNELNELKIKSDEMDLQLKQKQNESKRLKDELNELETKFSE 343
Query: 283 YSDDIGMKEREYNGLKKEVEDLSQELASKDKLL 315
KE E LK ++ +L +E+++K+ L
Sbjct: 344 NGSQSSAKENELKMLKNKIAELEEEISTKNSQL 376
>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sapiens GN=CEP135 PE=1 SV=2
Length = 1140
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 77 EIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDL 136
E+ES ++ + ++EE+I E N ++ + +E +++K IG D E + L ++D
Sbjct: 693 ELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVID-------KEKDFLQETVDE 745
Query: 137 KREELSLVQESVNN 150
K E+++ +QE++ N
Sbjct: 746 KTEKIANLQENLAN 759
>sp|A2AL36|CNTRL_MOUSE Centriolin OS=Mus musculus GN=Cntrl PE=2 SV=2
Length = 2334
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 270 ERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREF 329
+R L + ++ K ++G E L++E+E LSQ DKL + E ++
Sbjct: 1810 QRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQ-----DKL--ALHSEVAEVQQQL 1862
Query: 330 QVKKEELSSIKSEIVECSDEVELKRNEL-------NLIQHASNKLQFDLIQTMEI--GYL 380
Q K+E ++S++ E+ D ++L + +L N + + +LQ D+ + M
Sbjct: 1863 QGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQ 1922
Query: 381 RELKEKEKLFDSLKKGLEDRFQDLEVKERLFEKRVKDFEIREKEFDSIRKTVEGQGKNLE 440
+E + KE+ L+ + + L+ +E +F+K K+ E E++F++ + T+E Q + LE
Sbjct: 1923 KETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLE 1982
>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1
PE=1 SV=1
Length = 1120
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 148/310 (47%), Gaps = 39/310 (12%)
Query: 100 ACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKME 159
A Q E+G V++ + D EL +++L L+ ++ + +++ES+ +++
Sbjct: 462 AGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLT---AKEQRAA 518
Query: 160 LLKNLLEKCCDEIELKE----KKLGEVQRLVEEREKQIA----------LKDSKISSIQS 205
+L+ ++ +E KE KK ++Q + EE+ Q +K+ K++ +Q
Sbjct: 519 ILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQK 578
Query: 206 MIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRV------ 259
IE +E+L+ KEK +K+ ++ L+ + ++++E L+ + R
Sbjct: 579 KIENLQEQLRDKEKQMSSLKERVK----SLQADTTNTDTALTTLEEALADKERTIERLKE 634
Query: 260 ------RRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDK 313
R ++ E+++ +++L +++K D+ KE +K+ L+ KD
Sbjct: 635 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDS 694
Query: 314 LLKIFKKSI----EECSR-EFQVKKEELSSIKSEI-VECSDEVELKRNELNLIQHASNKL 367
LK + ++ EEC + E Q+KK +++++ E SD ++ E++ + S+K
Sbjct: 695 RLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKA 754
Query: 368 QFDLIQTMEI 377
Q ++ + +EI
Sbjct: 755 QTEVDRLLEI 764
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,778,218
Number of Sequences: 539616
Number of extensions: 7871415
Number of successful extensions: 78260
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 4360
Number of HSP's that attempted gapping in prelim test: 45358
Number of HSP's gapped (non-prelim): 16468
length of query: 544
length of database: 191,569,459
effective HSP length: 122
effective length of query: 422
effective length of database: 125,736,307
effective search space: 53060721554
effective search space used: 53060721554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)