Query 045360
Match_columns 544
No_of_seqs 179 out of 195
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 99.9 3.9E-27 8.4E-32 240.4 7.9 95 449-544 18-112 (290)
2 TIGR02168 SMC_prok_B chromosom 99.2 5.5E-07 1.2E-11 107.9 48.7 43 452-494 1076-1120(1179)
3 PRK02224 chromosome segregatio 99.1 4.1E-05 8.9E-10 90.2 57.1 19 307-325 531-549 (880)
4 TIGR02169 SMC_prok_A chromosom 99.1 1.2E-05 2.6E-10 96.7 48.8 33 18-54 151-183 (1164)
5 TIGR02169 SMC_prok_A chromosom 99.0 8.3E-06 1.8E-10 98.1 46.1 40 19-58 169-208 (1164)
6 TIGR02168 SMC_prok_B chromosom 98.9 9.2E-05 2E-09 89.0 48.2 162 74-245 675-836 (1179)
7 PRK01156 chromosome segregatio 98.9 0.00059 1.3E-08 80.8 61.8 8 456-463 748-755 (895)
8 TIGR00606 rad50 rad50. This fa 98.9 0.00085 1.8E-08 82.6 55.1 139 112-250 823-961 (1311)
9 PRK03918 chromosome segregatio 98.8 0.00079 1.7E-08 79.3 58.1 10 484-493 811-820 (880)
10 KOG0161 Myosin class II heavy 98.8 0.0017 3.7E-08 80.7 58.2 51 200-250 1057-1107(1930)
11 PRK03918 chromosome segregatio 98.8 0.0011 2.5E-08 78.0 55.9 36 68-103 192-227 (880)
12 PRK01156 chromosome segregatio 98.8 0.0013 2.8E-08 77.9 58.2 6 514-519 807-812 (895)
13 COG1196 Smc Chromosome segrega 98.7 0.00071 1.5E-08 82.3 48.4 15 511-525 1103-1117(1163)
14 COG1196 Smc Chromosome segrega 98.7 0.001 2.2E-08 81.0 48.5 225 21-245 668-896 (1163)
15 TIGR00606 rad50 rad50. This fa 98.7 0.0037 8E-08 77.0 58.5 37 17-53 515-551 (1311)
16 KOG0161 Myosin class II heavy 98.7 0.0041 8.9E-08 77.5 56.3 140 165-304 994-1144(1930)
17 PF00261 Tropomyosin: Tropomyo 98.6 0.00011 2.4E-09 73.8 31.4 132 116-250 27-158 (237)
18 KOG0250 DNA repair protein RAD 98.5 0.00039 8.5E-09 80.9 35.7 194 17-228 159-388 (1074)
19 PF00261 Tropomyosin: Tropomyo 98.5 0.00032 7E-09 70.4 30.8 65 90-154 15-79 (237)
20 PF10174 Cast: RIM-binding pro 98.2 0.025 5.4E-07 65.7 52.0 129 174-302 291-423 (775)
21 KOG4674 Uncharacterized conser 98.1 0.057 1.2E-06 66.9 57.8 31 450-480 1140-1173(1822)
22 PF10174 Cast: RIM-binding pro 98.1 0.05 1.1E-06 63.2 55.2 177 167-343 228-408 (775)
23 PF12128 DUF3584: Protein of u 98.0 0.05 1.1E-06 66.7 39.1 19 452-470 1038-1056(1201)
24 KOG0996 Structural maintenance 97.9 0.11 2.4E-06 61.6 42.2 154 178-331 413-567 (1293)
25 KOG0933 Structural maintenance 97.9 0.11 2.4E-06 60.7 40.8 100 256-358 835-937 (1174)
26 KOG0996 Structural maintenance 97.7 0.2 4.3E-06 59.5 40.2 286 11-299 289-591 (1293)
27 PF07888 CALCOCO1: Calcium bin 97.7 0.14 2.9E-06 57.1 43.1 86 53-138 141-226 (546)
28 KOG0250 DNA repair protein RAD 97.7 0.24 5.1E-06 58.6 54.8 119 19-137 220-349 (1074)
29 PF07888 CALCOCO1: Calcium bin 97.7 0.16 3.4E-06 56.6 45.1 43 281-323 360-402 (546)
30 PHA02562 46 endonuclease subun 97.6 0.072 1.6E-06 59.6 30.3 10 484-493 495-504 (562)
31 PHA02562 46 endonuclease subun 97.6 0.12 2.5E-06 58.0 31.6 29 113-141 215-243 (562)
32 KOG0933 Structural maintenance 97.6 0.27 5.8E-06 57.6 52.1 97 87-183 396-499 (1174)
33 KOG0018 Structural maintenance 97.6 0.3 6.6E-06 57.5 37.0 97 43-148 649-748 (1141)
34 PF00038 Filament: Intermediat 97.5 0.16 3.4E-06 52.7 38.5 118 27-144 11-136 (312)
35 PRK11637 AmiB activator; Provi 97.5 0.18 3.9E-06 55.0 30.4 66 70-135 48-113 (428)
36 KOG1029 Endocytic adaptor prot 97.4 0.11 2.4E-06 59.0 27.2 64 91-154 438-501 (1118)
37 KOG4674 Uncharacterized conser 97.4 0.74 1.6E-05 57.6 59.4 95 42-136 67-161 (1822)
38 COG1579 Zn-ribbon protein, pos 97.4 0.063 1.4E-06 54.0 22.8 69 80-148 14-82 (239)
39 KOG0995 Centromere-associated 97.3 0.44 9.5E-06 52.9 43.7 103 39-141 215-324 (581)
40 PF05701 WEMBL: Weak chloropla 97.3 0.51 1.1E-05 52.9 46.2 59 282-340 369-427 (522)
41 PRK11637 AmiB activator; Provi 97.2 0.5 1.1E-05 51.5 30.7 66 293-358 181-246 (428)
42 PRK04778 septation ring format 97.2 0.64 1.4E-05 52.7 48.1 60 193-252 277-336 (569)
43 PF12128 DUF3584: Protein of u 97.2 1.2 2.5E-05 55.1 62.6 72 172-243 602-673 (1201)
44 PF00038 Filament: Intermediat 97.1 0.47 1E-05 49.2 38.4 121 12-135 20-141 (312)
45 KOG4643 Uncharacterized coiled 97.1 1 2.3E-05 52.9 45.4 149 211-359 442-596 (1195)
46 KOG0995 Centromere-associated 97.0 0.9 2E-05 50.5 42.0 46 205-250 425-470 (581)
47 KOG0018 Structural maintenance 96.9 1.2 2.7E-05 52.7 30.2 61 69-129 227-287 (1141)
48 TIGR03185 DNA_S_dndD DNA sulfu 96.9 1.2 2.6E-05 51.3 39.0 79 29-109 171-249 (650)
49 COG1340 Uncharacterized archae 96.8 0.86 1.9E-05 47.1 32.8 64 255-318 177-240 (294)
50 PF05701 WEMBL: Weak chloropla 96.7 1.5 3.2E-05 49.3 52.9 50 46-95 32-81 (522)
51 PF12718 Tropomyosin_1: Tropom 96.6 0.46 9.9E-06 44.2 19.7 26 171-196 29-54 (143)
52 PF05667 DUF812: Protein of un 96.6 2 4.3E-05 49.0 33.5 60 71-130 323-382 (594)
53 PRK04863 mukB cell division pr 96.5 3.6 7.9E-05 51.6 50.0 22 17-38 237-258 (1486)
54 KOG0980 Actin-binding protein 96.5 2.7 5.8E-05 49.1 32.8 187 90-276 358-545 (980)
55 KOG0971 Microtubule-associated 96.4 2.7 5.9E-05 49.1 39.7 36 39-74 229-267 (1243)
56 PF01576 Myosin_tail_1: Myosin 96.4 0.00086 1.9E-08 79.0 0.0 21 334-354 710-730 (859)
57 PF09726 Macoilin: Transmembra 96.3 3.1 6.6E-05 48.4 30.5 39 280-318 617-655 (697)
58 KOG0994 Extracellular matrix g 96.3 3.8 8.3E-05 49.1 35.3 20 83-102 1511-1530(1758)
59 PF01576 Myosin_tail_1: Myosin 96.3 0.0011 2.4E-08 78.1 0.0 100 203-302 326-429 (859)
60 PF15619 Lebercilin: Ciliary p 96.2 1.4 2.9E-05 43.2 24.9 19 80-98 16-34 (194)
61 PF05483 SCP-1: Synaptonemal c 96.2 3.1 6.8E-05 47.3 58.0 73 79-151 236-308 (786)
62 PRK04863 mukB cell division pr 96.2 5.7 0.00012 50.0 53.3 12 528-539 775-786 (1486)
63 KOG0964 Structural maintenance 96.1 4.3 9.2E-05 48.0 43.7 79 71-149 680-758 (1200)
64 KOG0976 Rho/Rac1-interacting s 96.0 4.1 8.8E-05 47.1 45.0 56 69-124 92-147 (1265)
65 KOG0976 Rho/Rac1-interacting s 96.0 4.1 9E-05 47.1 43.4 63 81-143 97-159 (1265)
66 KOG0977 Nuclear envelope prote 96.0 3.7 8E-05 46.0 31.5 119 19-137 41-167 (546)
67 PF15619 Lebercilin: Ciliary p 96.0 1.8 3.9E-05 42.4 25.3 94 42-135 13-106 (194)
68 PRK09039 hypothetical protein; 95.9 1.1 2.5E-05 47.5 20.9 21 482-502 303-323 (343)
69 COG1340 Uncharacterized archae 95.9 2.5 5.4E-05 43.8 35.7 15 398-412 241-255 (294)
70 KOG1029 Endocytic adaptor prot 95.8 5.1 0.00011 46.3 37.7 49 202-250 448-496 (1118)
71 COG4372 Uncharacterized protei 95.8 3.4 7.4E-05 44.1 30.5 37 211-247 195-231 (499)
72 PF05483 SCP-1: Synaptonemal c 95.7 5.3 0.00011 45.6 51.9 105 41-149 370-481 (786)
73 PRK04778 septation ring format 95.5 6 0.00013 44.9 49.2 58 258-315 276-333 (569)
74 PF14915 CCDC144C: CCDC144C pr 95.3 4.2 9E-05 42.1 40.3 232 110-351 55-298 (305)
75 PF06160 EzrA: Septation ring 95.0 8.3 0.00018 43.8 45.3 77 281-357 347-426 (560)
76 PRK09039 hypothetical protein; 94.9 6.3 0.00014 41.9 22.9 11 485-495 291-301 (343)
77 PF04849 HAP1_N: HAP1 N-termin 94.9 5.8 0.00013 41.4 26.7 104 207-313 201-304 (306)
78 PF09726 Macoilin: Transmembra 94.9 10 0.00022 44.1 30.0 35 302-336 604-638 (697)
79 PF10473 CENP-F_leu_zip: Leuci 94.9 3.3 7.2E-05 38.5 19.6 48 87-134 21-68 (140)
80 KOG0962 DNA repair protein RAD 94.8 14 0.00029 45.5 45.4 61 294-354 1010-1071(1294)
81 KOG0963 Transcription factor/C 94.7 9.5 0.00021 43.2 39.6 155 165-323 184-354 (629)
82 PF10473 CENP-F_leu_zip: Leuci 94.6 3.8 8.2E-05 38.1 18.0 17 42-58 11-27 (140)
83 KOG0978 E3 ubiquitin ligase in 94.6 11 0.00024 43.5 36.7 30 9-38 338-367 (698)
84 COG0419 SbcC ATPase involved i 94.6 14 0.0003 44.4 60.3 15 516-530 860-874 (908)
85 KOG0994 Extracellular matrix g 94.5 15 0.00032 44.4 39.0 117 111-248 1511-1627(1758)
86 COG0419 SbcC ATPase involved i 94.5 14 0.00031 44.2 56.6 12 531-542 853-864 (908)
87 COG3883 Uncharacterized protei 94.4 7 0.00015 40.0 24.4 67 29-95 33-99 (265)
88 PF08317 Spc7: Spc7 kinetochor 94.3 5.5 0.00012 42.0 19.8 13 21-33 86-98 (325)
89 PF05010 TACC: Transforming ac 94.2 6.5 0.00014 38.9 26.3 79 115-196 59-137 (207)
90 KOG0971 Microtubule-associated 94.2 15 0.00033 43.2 40.5 42 108-149 273-314 (1243)
91 KOG0980 Actin-binding protein 94.1 16 0.00034 43.0 32.8 13 514-526 789-801 (980)
92 PF04849 HAP1_N: HAP1 N-termin 93.8 10 0.00022 39.7 24.9 95 198-295 206-300 (306)
93 KOG0612 Rho-associated, coiled 93.6 23 0.00049 43.2 44.5 28 69-96 458-485 (1317)
94 smart00787 Spc7 Spc7 kinetocho 93.5 9.1 0.0002 40.2 19.5 43 108-150 155-197 (312)
95 PF05911 DUF869: Plant protein 92.9 24 0.00052 41.6 26.5 23 18-40 500-522 (769)
96 KOG1003 Actin filament-coating 92.8 10 0.00023 37.0 26.3 54 84-137 5-58 (205)
97 COG3883 Uncharacterized protei 92.5 14 0.00031 37.8 25.1 60 179-238 40-99 (265)
98 KOG0979 Structural maintenance 92.4 30 0.00065 41.4 30.2 151 96-247 180-332 (1072)
99 COG4942 Membrane-bound metallo 92.0 22 0.00047 38.8 30.5 32 49-80 39-70 (420)
100 KOG2991 Splicing regulator [RN 92.0 16 0.00034 37.2 23.2 158 165-323 131-302 (330)
101 KOG0612 Rho-associated, coiled 91.9 37 0.0008 41.5 42.3 14 480-493 973-986 (1317)
102 PF13851 GAS: Growth-arrest sp 91.5 15 0.00033 36.1 27.5 50 165-214 88-137 (201)
103 PF05557 MAD: Mitotic checkpoi 91.4 0.26 5.5E-06 57.4 5.3 26 451-478 552-577 (722)
104 PRK10869 recombination and rep 91.3 31 0.00066 39.2 23.4 59 17-75 137-198 (553)
105 PF12325 TMF_TATA_bd: TATA ele 91.2 9.9 0.00022 34.4 14.2 96 255-350 21-119 (120)
106 PF12325 TMF_TATA_bd: TATA ele 91.1 11 0.00023 34.2 14.3 44 166-209 71-114 (120)
107 KOG0963 Transcription factor/C 91.1 32 0.0007 39.1 34.8 35 324-358 383-417 (629)
108 PF11559 ADIP: Afadin- and alp 91.1 9.9 0.00022 35.3 14.7 60 71-130 61-120 (151)
109 KOG0946 ER-Golgi vesicle-tethe 90.9 39 0.00084 39.6 31.2 36 165-200 680-715 (970)
110 PF14662 CCDC155: Coiled-coil 90.7 18 0.00038 35.4 25.6 51 56-106 5-59 (193)
111 PF06160 EzrA: Septation ring 90.6 35 0.00076 38.8 48.6 65 258-322 272-336 (560)
112 KOG4643 Uncharacterized coiled 90.6 45 0.00099 40.0 46.7 137 14-151 179-341 (1195)
113 KOG0977 Nuclear envelope prote 90.5 35 0.00075 38.5 31.3 52 279-330 336-387 (546)
114 PF05667 DUF812: Protein of un 90.4 38 0.00082 38.8 36.1 36 255-290 489-524 (594)
115 PF08614 ATG16: Autophagy prot 90.2 5 0.00011 39.0 12.3 11 12-22 9-19 (194)
116 KOG0946 ER-Golgi vesicle-tethe 90.1 45 0.00097 39.2 30.6 65 76-140 650-714 (970)
117 KOG0979 Structural maintenance 89.0 60 0.0013 39.0 33.1 42 290-331 861-902 (1072)
118 COG4372 Uncharacterized protei 88.7 38 0.00083 36.5 30.3 30 266-295 254-283 (499)
119 PF06008 Laminin_I: Laminin Do 88.5 30 0.00066 35.1 29.7 48 33-80 23-70 (264)
120 PF10146 zf-C4H2: Zinc finger- 88.5 16 0.00034 36.8 14.6 70 61-130 3-72 (230)
121 PF13851 GAS: Growth-arrest sp 88.0 28 0.00062 34.2 21.8 9 235-243 159-167 (201)
122 COG2433 Uncharacterized conser 88.0 19 0.00041 40.8 15.9 24 20-47 355-378 (652)
123 COG4477 EzrA Negative regulato 87.6 53 0.0012 36.8 37.0 82 281-362 350-431 (570)
124 COG5185 HEC1 Protein involved 87.6 50 0.0011 36.5 32.0 90 160-249 327-426 (622)
125 PF04111 APG6: Autophagy prote 87.1 11 0.00023 39.7 13.1 81 165-245 52-132 (314)
126 KOG1003 Actin filament-coating 87.0 32 0.0007 33.7 26.7 25 126-150 5-29 (205)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.8 24 0.00053 32.1 19.4 54 194-247 27-80 (132)
128 PF10146 zf-C4H2: Zinc finger- 86.7 24 0.00052 35.5 14.7 70 82-151 31-100 (230)
129 PF09728 Taxilin: Myosin-like 86.1 48 0.001 34.8 40.1 81 280-364 225-305 (309)
130 PF05622 HOOK: HOOK protein; 85.9 0.44 9.4E-06 55.5 2.2 25 17-41 67-91 (713)
131 PF08614 ATG16: Autophagy prot 85.8 9.9 0.00021 37.0 11.3 50 170-219 137-186 (194)
132 PF09728 Taxilin: Myosin-like 85.5 51 0.0011 34.6 39.9 15 165-179 76-90 (309)
133 COG4942 Membrane-bound metallo 85.5 61 0.0013 35.5 31.7 34 202-235 154-187 (420)
134 PF10168 Nup88: Nuclear pore c 85.5 83 0.0018 37.0 22.6 8 70-77 544-551 (717)
135 KOG0978 E3 ubiquitin ligase in 85.4 80 0.0017 36.8 44.5 38 21-58 266-303 (698)
136 TIGR00634 recN DNA repair prot 85.3 73 0.0016 36.1 22.3 58 17-74 141-201 (563)
137 PF06818 Fez1: Fez1; InterPro 85.0 42 0.00091 33.1 19.9 64 63-126 11-74 (202)
138 PF10498 IFT57: Intra-flagella 84.9 52 0.0011 35.4 17.0 51 200-250 268-318 (359)
139 PF15070 GOLGA2L5: Putative go 83.8 91 0.002 36.0 39.3 27 381-407 339-368 (617)
140 KOG0962 DNA repair protein RAD 83.7 1.3E+02 0.0027 37.6 53.5 48 452-500 683-730 (1294)
141 PF10498 IFT57: Intra-flagella 83.7 65 0.0014 34.6 17.1 20 111-130 184-203 (359)
142 TIGR03319 YmdA_YtgF conserved 83.4 85 0.0018 35.4 21.1 40 453-494 222-267 (514)
143 PF14915 CCDC144C: CCDC144C pr 83.3 62 0.0013 33.8 35.5 123 179-301 139-265 (305)
144 TIGR02680 conserved hypothetic 82.8 1.5E+02 0.0031 37.6 34.4 10 453-462 1166-1175(1353)
145 PF15070 GOLGA2L5: Putative go 82.5 1E+02 0.0022 35.6 41.6 58 177-234 202-259 (617)
146 PF08317 Spc7: Spc7 kinetochor 81.8 73 0.0016 33.5 29.2 30 214-243 211-240 (325)
147 TIGR00634 recN DNA repair prot 81.4 1E+02 0.0022 34.9 27.1 15 529-543 546-560 (563)
148 PF05622 HOOK: HOOK protein; 80.7 0.51 1.1E-05 54.9 0.0 6 460-465 688-693 (713)
149 KOG4673 Transcription factor T 80.6 1.2E+02 0.0026 35.2 37.4 94 82-199 345-438 (961)
150 PRK11281 hypothetical protein; 80.3 1.6E+02 0.0034 36.5 31.2 126 102-230 126-252 (1113)
151 PF12795 MscS_porin: Mechanose 80.3 67 0.0015 32.2 22.9 56 99-154 80-135 (240)
152 PF05010 TACC: Transforming ac 80.0 66 0.0014 31.9 29.3 28 125-152 23-50 (207)
153 KOG4360 Uncharacterized coiled 79.6 1.1E+02 0.0024 34.2 18.2 26 115-140 202-227 (596)
154 KOG0964 Structural maintenance 79.1 1.6E+02 0.0034 35.7 52.8 77 284-360 677-753 (1200)
155 PF06008 Laminin_I: Laminin Do 79.1 77 0.0017 32.2 29.9 16 31-46 4-19 (264)
156 PF04111 APG6: Autophagy prote 79.0 30 0.00064 36.4 12.4 78 71-148 52-129 (314)
157 PF13166 AAA_13: AAA domain 78.5 1.4E+02 0.0029 34.7 25.7 15 480-494 633-647 (712)
158 PF15254 CCDC14: Coiled-coil d 77.7 1.5E+02 0.0033 34.8 20.6 30 69-98 337-371 (861)
159 PF10168 Nup88: Nuclear pore c 77.5 1.5E+02 0.0034 34.8 21.5 32 212-243 639-670 (717)
160 PF10481 CENP-F_N: Cenp-F N-te 77.3 93 0.002 32.1 18.4 109 77-188 19-127 (307)
161 COG2433 Uncharacterized conser 76.5 58 0.0013 37.1 14.1 33 218-250 473-505 (652)
162 PRK12704 phosphodiesterase; Pr 75.8 1.5E+02 0.0032 33.6 22.2 41 452-494 227-273 (520)
163 TIGR03185 DNA_S_dndD DNA sulfu 75.7 1.6E+02 0.0035 34.0 39.5 14 485-498 574-587 (650)
164 PF09789 DUF2353: Uncharacteri 75.4 1.2E+02 0.0025 32.2 24.2 199 99-323 4-213 (319)
165 PF06818 Fez1: Fez1; InterPro 74.8 92 0.002 30.8 22.4 33 99-131 12-44 (202)
166 TIGR03007 pepcterm_ChnLen poly 74.5 1.4E+02 0.0031 32.9 21.6 14 513-526 471-484 (498)
167 PF11559 ADIP: Afadin- and alp 74.0 74 0.0016 29.4 16.3 16 168-183 131-146 (151)
168 PF09789 DUF2353: Uncharacteri 73.7 1.3E+02 0.0027 31.9 24.4 52 187-238 129-180 (319)
169 COG4026 Uncharacterized protei 73.2 33 0.00072 34.3 10.0 67 165-231 144-210 (290)
170 KOG0999 Microtubule-associated 72.9 1.7E+02 0.0037 33.1 32.3 32 327-358 318-349 (772)
171 PF13870 DUF4201: Domain of un 71.5 95 0.0021 29.5 22.7 22 256-277 111-132 (177)
172 KOG0804 Cytoplasmic Zn-finger 68.9 1.9E+02 0.0041 32.0 16.6 21 204-224 434-454 (493)
173 COG5185 HEC1 Protein involved 68.6 2E+02 0.0043 32.0 34.6 23 348-370 533-555 (622)
174 PF15066 CAGE1: Cancer-associa 68.3 2E+02 0.0043 32.0 27.3 35 381-415 485-519 (527)
175 PF06785 UPF0242: Uncharacteri 67.2 1.8E+02 0.0039 31.0 17.3 31 169-199 140-170 (401)
176 PF10234 Cluap1: Clusterin-ass 66.1 1.7E+02 0.0036 30.3 15.6 47 206-252 170-216 (267)
177 PF10205 KLRAQ: Predicted coil 65.0 99 0.0021 27.3 10.3 70 82-151 4-73 (102)
178 KOG4360 Uncharacterized coiled 64.9 2.4E+02 0.0052 31.7 18.8 30 206-235 199-228 (596)
179 PF05384 DegS: Sensor protein 64.6 1.3E+02 0.0029 28.6 17.2 125 72-206 23-155 (159)
180 KOG4673 Transcription factor T 63.9 2.9E+02 0.0063 32.3 38.9 65 297-364 610-674 (961)
181 PF06005 DUF904: Protein of un 63.9 82 0.0018 25.9 10.3 34 70-103 5-38 (72)
182 PF08647 BRE1: BRE1 E3 ubiquit 63.5 98 0.0021 26.7 11.6 31 76-106 3-33 (96)
183 PF10234 Cluap1: Clusterin-ass 61.0 2.1E+02 0.0045 29.6 13.6 36 165-200 199-234 (267)
184 PRK10929 putative mechanosensi 61.0 4.1E+02 0.0089 33.0 30.4 54 177-230 180-233 (1109)
185 PF05266 DUF724: Protein of un 60.8 1.7E+02 0.0037 28.6 14.2 18 165-182 105-122 (190)
186 TIGR01005 eps_transp_fam exopo 60.0 3.4E+02 0.0074 31.8 24.2 6 457-462 601-606 (754)
187 PF05266 DUF724: Protein of un 59.8 1.8E+02 0.0038 28.5 14.8 15 39-53 64-78 (190)
188 TIGR01005 eps_transp_fam exopo 57.8 3.7E+02 0.008 31.5 23.4 24 128-151 197-220 (754)
189 PF02994 Transposase_22: L1 tr 56.3 33 0.00071 36.9 7.2 8 124-131 111-118 (370)
190 PF10481 CENP-F_N: Cenp-F N-te 55.2 2.6E+02 0.0057 29.0 18.3 49 274-322 77-125 (307)
191 KOG0982 Centrosomal protein Nu 53.7 3.4E+02 0.0074 29.9 26.0 67 1-67 213-290 (502)
192 PF02994 Transposase_22: L1 tr 52.8 42 0.00092 36.1 7.4 11 445-455 317-327 (370)
193 COG4026 Uncharacterized protei 52.8 1.3E+02 0.0028 30.2 9.9 44 268-311 139-182 (290)
194 PRK09343 prefoldin subunit bet 52.7 1.7E+02 0.0038 26.2 11.9 18 92-109 9-26 (121)
195 PF09738 DUF2051: Double stran 52.1 3.1E+02 0.0066 28.9 13.5 51 182-232 110-160 (302)
196 PF05911 DUF869: Plant protein 50.4 5.1E+02 0.011 30.9 35.7 151 79-235 20-171 (769)
197 TIGR03007 pepcterm_ChnLen poly 50.2 3.9E+02 0.0084 29.5 22.2 24 300-323 356-379 (498)
198 PF09730 BicD: Microtubule-ass 49.8 5E+02 0.011 30.6 44.2 55 266-320 267-321 (717)
199 PRK15422 septal ring assembly 49.6 1.6E+02 0.0034 24.8 9.8 38 70-107 5-42 (79)
200 PRK00106 hypothetical protein; 48.8 4.6E+02 0.0099 29.9 18.2 129 256-404 60-189 (535)
201 PF07106 TBPIP: Tat binding pr 48.7 1.6E+02 0.0035 27.7 9.9 30 4-34 18-47 (169)
202 KOG4438 Centromere-associated 46.9 4.3E+02 0.0094 29.1 35.1 23 329-351 335-357 (446)
203 PF14197 Cep57_CLD_2: Centroso 46.6 1.6E+02 0.0035 24.0 9.6 28 166-193 36-63 (69)
204 PF12329 TMF_DNA_bd: TATA elem 46.3 1.7E+02 0.0036 24.1 9.4 17 67-83 10-26 (74)
205 KOG2196 Nuclear porin [Nuclear 43.8 3.7E+02 0.008 27.4 16.8 121 200-323 73-202 (254)
206 PRK11281 hypothetical protein; 43.0 7.6E+02 0.016 30.8 29.4 22 396-417 408-429 (1113)
207 PF13166 AAA_13: AAA domain 42.6 5.9E+02 0.013 29.4 27.5 9 532-540 695-703 (712)
208 PF05278 PEARLI-4: Arabidopsis 42.5 4.1E+02 0.0088 27.5 14.8 27 113-139 154-180 (269)
209 PF05377 FlaC_arch: Flagella a 42.5 1.3E+02 0.0029 23.5 6.6 29 74-102 5-33 (55)
210 smart00502 BBC B-Box C-termina 41.8 2.3E+02 0.0049 24.4 12.0 58 7-64 4-62 (127)
211 KOG3647 Predicted coiled-coil 41.6 4.2E+02 0.0092 27.4 14.2 113 87-209 109-225 (338)
212 KOG2991 Splicing regulator [RN 41.6 4.1E+02 0.009 27.3 25.2 25 30-54 75-99 (330)
213 PF04949 Transcrip_act: Transc 41.2 3.1E+02 0.0068 25.8 16.0 45 110-154 83-127 (159)
214 PF00769 ERM: Ezrin/radixin/mo 40.7 4E+02 0.0087 26.9 17.4 43 303-345 79-121 (246)
215 PF13863 DUF4200: Domain of un 38.8 2.8E+02 0.006 24.5 16.8 12 215-226 17-28 (126)
216 PF07889 DUF1664: Protein of u 38.8 3.1E+02 0.0067 25.1 10.6 43 112-154 76-118 (126)
217 KOG1937 Uncharacterized conser 38.4 6E+02 0.013 28.3 28.9 245 79-339 227-484 (521)
218 KOG1962 B-cell receptor-associ 38.2 1.3E+02 0.0028 30.1 7.5 8 123-130 191-198 (216)
219 PF07544 Med9: RNA polymerase 38.0 1.5E+02 0.0032 24.9 6.9 67 26-95 9-78 (83)
220 TIGR03017 EpsF chain length de 37.8 5.5E+02 0.012 27.7 22.9 28 324-351 339-366 (444)
221 COG3074 Uncharacterized protei 37.5 2.3E+02 0.0051 23.3 9.4 52 71-122 6-57 (79)
222 PF10212 TTKRSYEDQ: Predicted 37.2 5.5E+02 0.012 29.1 12.9 89 25-116 425-513 (518)
223 PF10205 KLRAQ: Predicted coil 37.1 3E+02 0.0064 24.4 10.7 72 74-145 3-74 (102)
224 PF04949 Transcrip_act: Transc 36.4 3.8E+02 0.0081 25.3 16.7 22 274-295 122-143 (159)
225 PRK00846 hypothetical protein; 36.3 2.2E+02 0.0047 23.9 7.4 44 55-98 9-56 (77)
226 PF02050 FliJ: Flagellar FliJ 36.2 2.6E+02 0.0057 23.5 16.3 95 260-354 8-107 (123)
227 PF15066 CAGE1: Cancer-associa 36.0 6.6E+02 0.014 28.1 27.6 35 216-250 387-421 (527)
228 PRK00736 hypothetical protein; 34.6 1.8E+02 0.0038 23.6 6.6 10 58-67 4-13 (68)
229 PRK00295 hypothetical protein; 34.5 2E+02 0.0043 23.3 6.8 48 56-103 2-53 (68)
230 KOG0999 Microtubule-associated 34.0 7.7E+02 0.017 28.2 32.7 19 68-86 7-25 (772)
231 KOG1899 LAR transmembrane tyro 33.9 8.1E+02 0.018 28.5 16.9 24 254-277 192-215 (861)
232 KOG0972 Huntingtin interacting 33.4 5.9E+02 0.013 26.8 13.1 108 113-230 218-326 (384)
233 PF05278 PEARLI-4: Arabidopsis 33.4 5.6E+02 0.012 26.5 18.4 86 68-154 151-236 (269)
234 PRK10869 recombination and rep 32.8 7.8E+02 0.017 28.0 28.6 15 529-543 536-550 (553)
235 PF03915 AIP3: Actin interacti 32.5 7.2E+02 0.016 27.4 15.6 50 79-130 216-265 (424)
236 PF05335 DUF745: Protein of un 32.3 4.9E+02 0.011 25.4 17.1 65 181-245 106-170 (188)
237 PF06810 Phage_GP20: Phage min 32.3 4.3E+02 0.0094 24.8 10.0 19 90-108 20-38 (155)
238 PRK04325 hypothetical protein; 32.0 2.5E+02 0.0054 23.1 7.1 11 57-67 7-17 (74)
239 KOG4593 Mitotic checkpoint pro 31.9 9E+02 0.019 28.4 45.7 79 3-81 134-212 (716)
240 PF15188 CCDC-167: Coiled-coil 31.8 2.6E+02 0.0056 23.9 7.3 24 290-313 41-64 (85)
241 PF04645 DUF603: Protein of un 31.2 4.7E+02 0.01 25.2 9.7 29 59-87 100-130 (181)
242 PRK02119 hypothetical protein; 31.0 3E+02 0.0065 22.6 7.9 26 192-217 10-35 (73)
243 KOG0239 Kinesin (KAR3 subfamil 30.9 9.3E+02 0.02 28.3 20.3 38 111-148 175-212 (670)
244 PF04102 SlyX: SlyX; InterPro 29.8 2.8E+02 0.0061 22.3 7.0 39 256-294 3-41 (69)
245 PF07889 DUF1664: Protein of u 29.8 4.4E+02 0.0095 24.1 11.9 72 66-140 47-118 (126)
246 PF00170 bZIP_1: bZIP transcri 29.4 2.8E+02 0.006 21.7 6.9 36 67-102 24-59 (64)
247 PF04012 PspA_IM30: PspA/IM30 29.4 5.4E+02 0.012 25.1 21.5 44 37-80 26-69 (221)
248 PF15290 Syntaphilin: Golgi-lo 29.0 6.8E+02 0.015 26.1 13.9 37 277-313 109-145 (305)
249 PF14257 DUF4349: Domain of un 28.6 2.1E+02 0.0045 28.9 7.6 38 17-55 102-146 (262)
250 PF02183 HALZ: Homeobox associ 28.4 1.8E+02 0.004 21.6 5.2 33 81-113 3-35 (45)
251 PF09738 DUF2051: Double stran 27.3 7.5E+02 0.016 26.0 13.8 62 184-245 105-166 (302)
252 PRK04406 hypothetical protein; 27.2 3.6E+02 0.0078 22.3 8.2 22 193-214 13-34 (75)
253 COG4477 EzrA Negative regulato 26.9 9.8E+02 0.021 27.3 38.3 53 196-248 352-404 (570)
254 PF12795 MscS_porin: Mechanose 26.9 6.4E+02 0.014 25.1 24.6 36 113-148 80-115 (240)
255 PF06005 DUF904: Protein of un 26.7 3.6E+02 0.0078 22.1 11.1 20 211-230 45-64 (72)
256 PF15290 Syntaphilin: Golgi-lo 26.6 7.5E+02 0.016 25.8 14.6 37 184-220 124-160 (305)
257 smart00338 BRLZ basic region l 26.3 2.9E+02 0.0063 21.6 6.5 35 68-102 25-59 (65)
258 PF10779 XhlA: Haemolysin XhlA 26.2 2.8E+02 0.0061 22.3 6.5 7 46-52 4-10 (71)
259 KOG4809 Rab6 GTPase-interactin 26.0 1E+03 0.022 27.2 27.2 22 473-494 615-636 (654)
260 KOG2264 Exostosin EXT1L [Signa 25.9 4.8E+02 0.01 29.9 10.0 11 493-503 620-630 (907)
261 COG2900 SlyX Uncharacterized p 25.6 3.4E+02 0.0073 22.5 6.6 50 56-105 5-58 (72)
262 PF05529 Bap31: B-cell recepto 25.1 6.1E+02 0.013 24.2 10.3 34 288-321 157-190 (192)
263 PF03962 Mnd1: Mnd1 family; I 25.0 6.4E+02 0.014 24.4 14.0 18 177-194 110-127 (188)
264 PF03999 MAP65_ASE1: Microtubu 24.5 3.8E+02 0.0082 30.9 9.5 35 425-463 393-427 (619)
265 KOG4637 Adaptor for phosphoino 24.3 9.4E+02 0.02 26.2 12.6 92 17-108 157-248 (464)
266 KOG0239 Kinesin (KAR3 subfamil 24.3 1.2E+03 0.026 27.4 18.3 10 225-234 282-291 (670)
267 PF10805 DUF2730: Protein of u 24.2 4.9E+02 0.011 22.8 8.8 56 259-314 37-94 (106)
268 TIGR01069 mutS2 MutS2 family p 23.8 1.3E+03 0.028 27.5 14.0 28 470-505 734-761 (771)
269 COG3352 FlaC Putative archaeal 23.8 6.3E+02 0.014 23.9 10.1 12 43-54 23-34 (157)
270 KOG1899 LAR transmembrane tyro 23.5 1.2E+03 0.026 27.2 19.6 7 517-523 555-561 (861)
271 PF04102 SlyX: SlyX; InterPro 23.4 4E+02 0.0086 21.5 7.1 8 59-66 4-11 (69)
272 KOG2264 Exostosin EXT1L [Signa 23.3 6.5E+02 0.014 28.9 10.4 16 467-482 509-524 (907)
273 PRK02793 phi X174 lysis protei 23.1 4.2E+02 0.0091 21.6 7.7 33 193-225 10-42 (72)
274 PF08581 Tup_N: Tup N-terminal 23.0 4.6E+02 0.0099 22.0 10.7 29 207-235 13-41 (79)
275 TIGR02680 conserved hypothetic 22.8 1.7E+03 0.036 28.5 43.1 53 177-229 340-392 (1353)
276 PF04380 BMFP: Membrane fusoge 22.7 4.5E+02 0.0097 21.8 7.5 30 24-53 6-36 (79)
277 PF13514 AAA_27: AAA domain 22.6 1.5E+03 0.033 28.0 40.0 13 471-483 1029-1041(1111)
278 KOG1793 Uncharacterized conser 22.5 1E+02 0.0022 33.5 4.0 51 490-543 213-282 (417)
279 PRK02119 hypothetical protein; 22.1 4.5E+02 0.0097 21.6 7.8 6 59-64 9-14 (73)
280 PF05064 Nsp1_C: Nsp1-like C-t 22.0 2.6E+02 0.0056 24.9 6.0 53 200-252 17-69 (116)
281 PF03962 Mnd1: Mnd1 family; I 21.9 7.4E+02 0.016 24.0 11.2 19 69-87 69-87 (188)
282 PF08826 DMPK_coil: DMPK coile 21.7 4.2E+02 0.0091 21.1 9.1 37 258-294 19-55 (61)
283 PF05064 Nsp1_C: Nsp1-like C-t 21.5 95 0.0021 27.7 3.1 47 41-87 15-61 (116)
284 PF10805 DUF2730: Protein of u 21.1 5.6E+02 0.012 22.4 9.0 20 23-42 6-25 (106)
285 PRK04325 hypothetical protein; 21.0 4.7E+02 0.01 21.5 7.8 31 193-223 11-41 (74)
286 PRK00736 hypothetical protein; 21.0 4.5E+02 0.0098 21.2 7.3 15 195-209 9-23 (68)
287 PF05852 DUF848: Gammaherpesvi 20.5 7.2E+02 0.016 23.4 9.0 52 39-90 29-82 (146)
288 PF07106 TBPIP: Tat binding pr 20.2 7.2E+02 0.016 23.3 12.9 57 165-221 74-132 (169)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=99.94 E-value=3.9e-27 Score=240.42 Aligned_cols=95 Identities=36% Similarity=0.625 Sum_probs=89.6
Q ss_pred CCcccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCChhhHHHHhhcCcCCCCCCCcchhhhhhhhHHHHHHHHhhhhhc
Q 045360 449 ENLTSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDPASLVLDAMSGFYPPHSSERDVEFQVGLIRRSCILLLEHLLTV 528 (544)
Q Consensus 449 ~~l~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DPaklVLdai~~f~~~~~~~~~~~~~~~~~r~~cilLLE~L~~~ 528 (544)
.|.+|||+||++||++|++++++||+|||+||++|||||+||||||+||||++++. +++.++.++||+||+|||+|+++
T Consensus 18 lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE~L~~~ 96 (290)
T PF07899_consen 18 LCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLEQLMRI 96 (290)
T ss_pred HHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHHHHhhc
Confidence 46799999999999999999999999999999999999999999999999999876 44567788999999999999999
Q ss_pred CCCCChhHHHHHhhcC
Q 045360 529 APEINAQVRDEALKVA 544 (544)
Q Consensus 529 ~p~i~~~vke~A~~lA 544 (544)
+|.|+|+||++|++||
T Consensus 97 ~~~is~~vke~A~~lA 112 (290)
T PF07899_consen 97 SPEISPEVKEEAKKLA 112 (290)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999987
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.24 E-value=5.5e-07 Score=107.91 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=19.1
Q ss_pred ccchhhhHHHHHHhhhhhHhhHHHHHHhhh--hCCChhhHHHHhh
Q 045360 452 TSKGRNLQLLLNQHLQKHDLIFSKIFNTIK--RARDPASLVLDAM 494 (544)
Q Consensus 452 ~md~~gL~~f~~~~~ke~~~lr~ei~~AL~--~a~DPaklVLdai 494 (544)
.++..|.+.....+.+--..-+-.|+.||. ++.+|+-++||=+
T Consensus 1076 ~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~ 1120 (1179)
T TIGR02168 1076 FAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEV 1120 (1179)
T ss_pred EEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCc
Confidence 344444443333343333333444444443 2445555666643
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.15 E-value=4.1e-05 Score=90.22 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 045360 307 ELASKDKLLKIFKKSIEEC 325 (544)
Q Consensus 307 eL~~k~kq~e~~~ke~e~k 325 (544)
.+......++.+..+++..
T Consensus 531 ~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 531 TIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.06 E-value=1.2e-05 Score=96.75 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhH
Q 045360 18 KKQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGK 54 (544)
Q Consensus 18 ~~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~ 54 (544)
+....+.+|+. +..+-.|.-.+.+....+..+.
T Consensus 151 ~~~~r~~~~~~----~~g~~~~~~~~~~~~~~l~~~~ 183 (1164)
T TIGR02169 151 SPVERRKIIDE----IAGVAEFDRKKEKALEELEEVE 183 (1164)
T ss_pred CHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHH
Confidence 33444445543 3334445455555444444444
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.04 E-value=8.3e-06 Score=98.10 Aligned_cols=40 Identities=5% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHH
Q 045360 19 KQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLE 58 (544)
Q Consensus 19 ~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie 58 (544)
...+..+...+....-.+..+.-++.+++.+...+....+
T Consensus 169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566677777777777777764444
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.91 E-value=9.2e-05 Score=88.96 Aligned_cols=162 Identities=22% Similarity=0.279 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 045360 74 RAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQV 153 (544)
Q Consensus 74 lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~ 153 (544)
+..++..+...+..+...+..+...+.....++..+...+......+......+..+...+......+......+..+..
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~ 754 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444434444444444444444444444444443333333333333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045360 154 DQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCET 233 (544)
Q Consensus 154 k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~k 233 (544)
. +..+..++.....++..+...+......+......+..+...+.....++.....++......+.....
T Consensus 755 ~----------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 824 (1179)
T TIGR02168 755 E----------LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824 (1179)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333333333333333333333333333333333333333334444444444444444444444444433
Q ss_pred HHHHHHHHHHHH
Q 045360 234 KLECKKKELERT 245 (544)
Q Consensus 234 eLe~k~keLe~~ 245 (544)
.+.....++...
T Consensus 825 ~~~~l~~~~~~l 836 (1179)
T TIGR02168 825 RLESLERRIAAT 836 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 443333333333
No 7
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.00059 Score=80.78 Aligned_cols=8 Identities=0% Similarity=0.272 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 045360 456 RNLQLLLN 463 (544)
Q Consensus 456 ~gL~~f~~ 463 (544)
.|+..++.
T Consensus 748 ~~~~~~I~ 755 (895)
T PRK01156 748 SGVPAMIR 755 (895)
T ss_pred ccchHHHH
Confidence 33333333
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=0.00085 Score=82.59 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=72.1
Q ss_pred HHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 112 MIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREK 191 (544)
Q Consensus 112 eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~e 191 (544)
.+.+...++...+.++..+...++.+..........+..++.+...+......+..-......++++|+++...+.....
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555554444444444444444444555666666666666666666
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 192 QIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 192 eLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
.+..+...+..+...+..+..++.................-..+...-..|..+...|.
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555555555554444444443333333333333344444444443
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.00079 Score=79.34 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=5.4
Q ss_pred CChhhHHHHh
Q 045360 484 RDPASLVLDA 493 (544)
Q Consensus 484 ~DPaklVLda 493 (544)
.+|.-+|||-
T Consensus 811 ~~~~~lilDE 820 (880)
T PRK03918 811 GNIPLLILDE 820 (880)
T ss_pred CCCCeEEEeC
Confidence 4555555554
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.80 E-value=0.0017 Score=80.73 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
...+..+..++...+..++.++.+++.+++.....+....+.+..++.+|.
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~ 1107 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIK 1107 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555444
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.79 E-value=0.0011 Score=78.04 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 045360 68 IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQ 103 (544)
Q Consensus 68 ~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le 103 (544)
...+..+..++.++.+++..++..+..+...+..++
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~ 227 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLE 227 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=98.78 E-value=0.0013 Score=77.89 Aligned_cols=6 Identities=0% Similarity=-0.130 Sum_probs=2.5
Q ss_pred hHHHHH
Q 045360 514 IRRSCI 519 (544)
Q Consensus 514 ~r~~ci 519 (544)
..+.|+
T Consensus 807 ~~~~~l 812 (895)
T PRK01156 807 KTAVAF 812 (895)
T ss_pred HHHHHH
Confidence 344444
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.75 E-value=0.00071 Score=82.30 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHhhh
Q 045360 511 VGLIRRSCILLLEHL 525 (544)
Q Consensus 511 ~~~~r~~cilLLE~L 525 (544)
..-+.+.|-||-+.-
T Consensus 1103 ~~Nv~r~~~~i~e~s 1117 (1163)
T COG1196 1103 DANVERVARLIKEMS 1117 (1163)
T ss_pred HHHHHHHHHHHHHhC
Confidence 334677787777755
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.72 E-value=0.001 Score=80.99 Aligned_cols=225 Identities=21% Similarity=0.272 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 045360 21 ALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELA 100 (544)
Q Consensus 21 ~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~ 100 (544)
.+.....+|....+.+......|.++..++.++...+.+.-..+.....+++.+..++..+......+..++..+...+.
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888889999999999999888888887777777777777877777777777777777777766666
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 045360 101 CKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQ----KKMELLKNLLEKCCDEIELKE 176 (544)
Q Consensus 101 ~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~----~~l~~~~~~lE~~~~eie~ke 176 (544)
.+...+..++..+......+......+..+...++.+..........+..+.... ..+.++...+.........+.
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555555555555555555554444444443332222222222222110 112233333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 177 KKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERT 245 (544)
Q Consensus 177 ~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~ 245 (544)
.++..+..++......+..+...+...+..+......+...+.........+............++..+
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~ 896 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444444433
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=0.0037 Score=77.05 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhh
Q 045360 17 SKKQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLG 53 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~ 53 (544)
-+-..++.-+..+...|.+...+.+.-+++.++..++
T Consensus 515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 551 (1311)
T TIGR00606 515 RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQI 551 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.67 E-value=0.0041 Score=77.50 Aligned_cols=140 Identities=19% Similarity=0.308 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDE-------VKKSLRLCETKLEC 237 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~-------~~~~le~~~keLe~ 237 (544)
+..+...+...+.+...+.+.+..++..+..++..++......-++-.....+..++.. ....++.+...+..
T Consensus 994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~k 1073 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKK 1073 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666665555555544444333333222222222222 22233333344444
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 045360 238 KKKELERTQSSIK----ELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDL 304 (544)
Q Consensus 238 k~keLe~~~~eie----el~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ 304 (544)
+.-++..+..+++ .+.++...|+++...+..+.+.+..-...+....+....+..+++....++++.
T Consensus 1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 223455556666666655555555555555555555555555555555555443
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.65 E-value=0.00011 Score=73.80 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred hHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 116 CDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIAL 195 (544)
Q Consensus 116 ~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~ 195 (544)
..........++.++..++..+...+..+..++.....+ |....+...+....+..++.........+..++..|..
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~k---L~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~e 103 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEK---LEEAEKRADESERARKVLENREQSDEERIEELEQQLKE 103 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH---HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333322 22222223333333344444444444444555555555
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 196 KDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 196 ~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
....+......+++....|...+..+.....+++.....+.....+|..+...+.
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555554444433
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.54 E-value=0.00039 Score=80.93 Aligned_cols=194 Identities=14% Similarity=0.299 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHH------------HHhhhhhhh-------------------HhhchhhhHHhhhhhHHHHHHhhHHHH
Q 045360 17 SKKQALRRSFDIA------------HEQANSVLK-------------------FTVQWKDLEKHFDLGKKSLEKQSNDVD 65 (544)
Q Consensus 17 ~~~~~~~~~~~~i------------~~~a~~i~~-------------------~~~~~~~~e~~~~s~~~~ie~~~~el~ 65 (544)
-|++.++.+++-. |+.|-++|. .+-.|-.+-++++++...|....+++.
T Consensus 159 tKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~ 238 (1074)
T KOG0250|consen 159 TKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIK 238 (1074)
T ss_pred ccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3566677666543 777777776 455566666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHH
Q 045360 66 MKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELG-----LVQKMIGECDCELQLKESELNLLSVSLDLKREE 140 (544)
Q Consensus 66 ~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~-----~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~e 140 (544)
+.++.++..+.-+..++ +.. .....+..++..+. ...+++..+...|......+..+..+++.....
T Consensus 239 ~l~k~i~e~~e~~~~~~-~~e-------~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k 310 (1074)
T KOG0250|consen 239 NLKKKIKEEEEKLDNLE-QLE-------DLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGK 310 (1074)
T ss_pred HHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444331 111 22222333333322 233444444444444444444444443333333
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHh
Q 045360 141 LSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKS 220 (544)
Q Consensus 141 l~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~e 220 (544)
+......+.+++.+ +..+..+......+++...+-+..+..++...+.++......++..+..+..++++
T Consensus 311 ~~~~r~k~teiea~----------i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAK----------IGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred HHHHhhhhhHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222322 44444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 045360 221 YDEVKKSL 228 (544)
Q Consensus 221 l~~~~~~l 228 (544)
+....+..
T Consensus 381 I~~~~~~~ 388 (1074)
T KOG0250|consen 381 IADLEKQT 388 (1074)
T ss_pred HHHHHHHH
Confidence 44444433
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.52 E-value=0.00032 Score=70.40 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 90 ERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 90 ~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
.++..+...+......+..+..++..+.+.|......+.....++......+.......++..+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~ 79 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444444444444444444444444
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.22 E-value=0.025 Score=65.65 Aligned_cols=129 Identities=19% Similarity=0.318 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 045360 174 LKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK--- 250 (544)
Q Consensus 174 ~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie--- 250 (544)
...-+|.....++.....++..+.+....+..-|+.+...|..++.....++..++.+...|+.+...+.-.+..+.
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555566677788888888888888888888888888888888887777766
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 045360 251 -ELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVE 302 (544)
Q Consensus 251 -el~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kele 302 (544)
++..+...|..+.+..+..+..+.-+.++++.+...+..++++.......+.
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445677888888888888888888888888888888888888777666665
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.057 Score=66.88 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=21.1
Q ss_pred Ccccchhh---hHHHHHHhhhhhHhhHHHHHHhh
Q 045360 450 NLTSKGRN---LQLLLNQHLQKHDLIFSKIFNTI 480 (544)
Q Consensus 450 ~l~md~~g---L~~f~~~~~ke~~~lr~ei~~AL 480 (544)
|+.-++.| |...|.--|++.+.+-..+..+.
T Consensus 1140 n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk 1173 (1822)
T KOG4674|consen 1140 NLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLK 1173 (1822)
T ss_pred cccccccchHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 56667777 88877777777776666555443
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.06 E-value=0.05 Score=63.22 Aligned_cols=177 Identities=15% Similarity=0.249 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 167 KCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQ 246 (544)
Q Consensus 167 ~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~ 246 (544)
.+..-|..++..+..+.+.+..++.++..+...+...+...+....++.........+..+++...-+|..+..++...+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777776665555556666677888888888888888888888888888888888
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045360 247 SSIKEL----LSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI 322 (544)
Q Consensus 247 ~eieel----~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~ 322 (544)
+++..+ ..+..++.-+...+...+..-.-|...++.+.-.+..+...+......+.....++....-++....-.+
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877622 2345555555555555555555555555555555555555555555555555554444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 045360 323 EECSREFQVKKEELSSIKSEI 343 (544)
Q Consensus 323 e~k~~~~~~~~~el~s~~~~~ 343 (544)
.-++.++..-++.+++....+
T Consensus 388 d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 388 DKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.99 E-value=0.05 Score=66.70 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=10.9
Q ss_pred ccchhhhHHHHHHhhhhhH
Q 045360 452 TSKGRNLQLLLNQHLQKHD 470 (544)
Q Consensus 452 ~md~~gL~~f~~~~~ke~~ 470 (544)
+||.-|+|.=+..-...+.
T Consensus 1038 ~i~~l~~w~~Lk~F~~~~~ 1056 (1201)
T PF12128_consen 1038 SIDELEFWKPLKQFSDEYE 1056 (1201)
T ss_pred chhhhccHHHHHHHHHHHH
Confidence 5777777766654444333
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.11 Score=61.56 Aligned_cols=154 Identities=14% Similarity=0.235 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 045360 178 KLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK-ELLSFR 256 (544)
Q Consensus 178 eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie-el~~~e 256 (544)
.+..+.++++.-..+..++++..+.....+..+..++.............+.-....+..+-.-+..-...++ ++....
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~ 492 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLL 492 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444555555555554444444443333333222222222211111111 333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 257 RRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQV 331 (544)
Q Consensus 257 ~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~ 331 (544)
.++++...+.+-++.+|.-|....+...+.+..+.+.+......+.+....+.+....+.+..-++-.+++.|..
T Consensus 493 ~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 493 KQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 666777777777777777776666666666666655555555555544444444444444444444333333333
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.11 Score=60.69 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHH
Q 045360 256 RRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIE---ECSREFQVK 332 (544)
Q Consensus 256 e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e---~k~~~~~~~ 332 (544)
+.+..++...+..+...+..+.........++..+..++....+.+....+++...-...+.+..+.- +.-..++..
T Consensus 835 k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e 914 (1174)
T KOG0933|consen 835 KQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHE 914 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhH
Confidence 33344444444444555555555555555555555555555555555555555555444444444443 334444444
Q ss_pred HHHhhhhHHHHHHhhHHHHHHHHHHH
Q 045360 333 KEELSSIKSEIVECSDEVELKRNELN 358 (544)
Q Consensus 333 ~~el~s~~~~~~~~~~ele~k~~~~~ 358 (544)
+..+.+-.. .+.++++...+.+.
T Consensus 915 ~~~~~~e~~---~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 915 VTKLESEKA---NARKEVEKLLKKHE 937 (1174)
T ss_pred HHHhhhhHH---HHHHHHHHHHHhcc
Confidence 444444444 44444444444444
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.2 Score=59.51 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=118.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHhhhhhhh-HhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH--------H
Q 045360 11 ELRAAESKKQALRRSFDIAHEQANSVLK-FTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIES--------K 81 (544)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~i~~~a~~i~~-~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes--------~ 81 (544)
-+++++--+.+|.+.++..-+-...-.. |.++-+.++-.+.-+.+.|.....+++.....+......+.. .
T Consensus 289 ~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~ 368 (1293)
T KOG0996|consen 289 RVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKN 368 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH
Confidence 3566666666666655554433333333 335555566666666666665555555544333333222221 0
Q ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 82 ESDLVLVEERIKECN-------FELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 82 ekeie~L~~~iee~~-------~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
+..-..++.+...+. .++..+..+-..+...+..+...+.....++......++.+.+..+.....++.++..
T Consensus 369 e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 369 EAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 111111222222222 2222222222222333334444444444444444444444444444444444444443
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045360 155 QKKMELLKNLLEKC-CDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCET 233 (544)
Q Consensus 155 ~~~l~~~~~~lE~~-~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~k 233 (544)
-.+|..+.+..+.. ......+..+-.....++..++++|.-....+.....+++-...+|.-.........+.++....
T Consensus 449 i~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~ 528 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKG 528 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221111111 11111122223333334444444444444444444444444455555554444444445544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 045360 234 KLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKK 299 (544)
Q Consensus 234 eLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~k 299 (544)
.|......+.+....+ ......+..++.+++.....+..+-.....+...+....+..++.+.
T Consensus 529 ~L~~~~~~~~e~~~~l---~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 529 KLLASSESLKEKKTEL---DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333322 22344555555555555555544444433333444444444433333
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.72 E-value=0.14 Score=57.10 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=39.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Q 045360 53 GKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSV 132 (544)
Q Consensus 53 ~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~ 132 (544)
+...++.+-++.+...+....+.++...+..+++.|+..+.....+...+..+...+.........+...+..++.....
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444555555555555555555555555544444444444444333333333333333333333333
Q ss_pred hHHHHH
Q 045360 133 SLDLKR 138 (544)
Q Consensus 133 ~le~~~ 138 (544)
++..+.
T Consensus 221 ri~~LE 226 (546)
T PF07888_consen 221 RIRELE 226 (546)
T ss_pred HHHHHH
Confidence 333333
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.67 E-value=0.24 Score=58.64 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhH--HHHHHhhHHH---------HHHHHHHHHHHHHHHHHhhhHHH
Q 045360 19 KQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGK--KSLEKQSNDV---------DMKIMLLDQRAKEIESKESDLVL 87 (544)
Q Consensus 19 ~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~--~~ie~~~~el---------~~k~~~~e~lekEIes~ekeie~ 87 (544)
.++++.+...|+..+.-|.-+-=++++.+..++.+. ..+.++..-| --..+++.+....|...+..+..
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~ 299 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDT 299 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888877777777777777777554 2222222111 11134444454444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHH
Q 045360 88 VEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLK 137 (544)
Q Consensus 88 L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~ 137 (544)
++..+++....+......+.++...|+...-+.+....++..+..++..+
T Consensus 300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~ 349 (1074)
T KOG0250|consen 300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL 349 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44444444433333333333333333333333333333333333333333
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.67 E-value=0.16 Score=56.60 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045360 281 KKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIE 323 (544)
Q Consensus 281 e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e 323 (544)
..+.........++.....++..+++.+...+.+.....++|.
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ 402 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555556666666666666666666666663
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.63 E-value=0.072 Score=59.61 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=7.6
Q ss_pred CChhhHHHHh
Q 045360 484 RDPASLVLDA 493 (544)
Q Consensus 484 ~DPaklVLda 493 (544)
.+|.-++||=
T Consensus 495 ~~~~~lilDE 504 (562)
T PHA02562 495 VDTNLLILDE 504 (562)
T ss_pred CCcCeEEEec
Confidence 5888888873
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.62 E-value=0.12 Score=58.00 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=11.6
Q ss_pred HHhhHHHhhhHHHHHHHHHHhHHHHHHHH
Q 045360 113 IGECDCELQLKESELNLLSVSLDLKREEL 141 (544)
Q Consensus 113 I~e~~kEi~~~~~El~~l~~~le~~~~el 141 (544)
+..+..++.....+...+...+..+...+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.27 Score=57.58 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh-------hHHHH
Q 045360 87 LVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD-------QKKME 159 (544)
Q Consensus 87 ~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k-------~~~l~ 159 (544)
-+..++..+...+......+......++-+..+|..+..++......-.....++...++.++.+... -++++
T Consensus 396 ~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e 475 (1174)
T KOG0933|consen 396 TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEE 475 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 34445555555555555555555555555666666666655555444444444455555555544433 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 160 LLKNLLEKCCDEIELKEKKLGEVQ 183 (544)
Q Consensus 160 ~~~~~lE~~~~eie~ke~eLee~~ 183 (544)
++.+.....-..+-.+...+..+.
T Consensus 476 ~l~q~~~~l~~~~~~lk~~~~~l~ 499 (1174)
T KOG0933|consen 476 ALKQRRAKLHEDIGRLKDELDRLL 499 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 33
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.3 Score=57.53 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=44.5
Q ss_pred hhhhHHhhhhhH---HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045360 43 WKDLEKHFDLGK---KSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCE 119 (544)
Q Consensus 43 ~~~~e~~~~s~~---~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kE 119 (544)
|.+ .+++.+. .++.++..++....+.+ .+-+..+..|..++.....++.+..-.+.....++.....+
T Consensus 649 wde--k~~~~L~~~k~rl~eel~ei~~~~~e~-------~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~ 719 (1141)
T KOG0018|consen 649 WDE--KEVDQLKEKKERLLEELKEIQKRRKEV-------SSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESE 719 (1141)
T ss_pred cCH--HHHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 4555544 67777777776644433 33344445555555555555544444333333333333333
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 120 LQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 120 i~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
+...--++..+..+++.....+...+..+
T Consensus 720 i~~~~p~i~~i~r~l~~~e~~~~~L~~~~ 748 (1141)
T KOG0018|consen 720 IDEFGPEISEIKRKLQNREGEMKELEERM 748 (1141)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.52 E-value=0.16 Score=52.74 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=54.7
Q ss_pred HHHHHhhhhhhhHhhchhhhHHhhhhhHHH-------HHHhh-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045360 27 DIAHEQANSVLKFTVQWKDLEKHFDLGKKS-------LEKQS-NDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFE 98 (544)
Q Consensus 27 ~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~-------ie~~~-~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~e 98 (544)
|++-+-+.-|..|.-+=+.++.++..+... +-..+ .++.....+|..+..+...+..+++.+...++.+...
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k 90 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH
Confidence 344444455555555555555555544432 11111 2222223444444444444444444444445555444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHH
Q 045360 99 LACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLV 144 (544)
Q Consensus 99 l~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~ 144 (544)
+.........+..+|..+.+.+.........+...+..+..++...
T Consensus 91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555555555555443
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.51 E-value=0.18 Score=54.97 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHH
Q 045360 70 LLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLD 135 (544)
Q Consensus 70 ~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le 135 (544)
++..+.++|....+.+..++..+.....++..+..++..+...|.....+|...+.++..+...+.
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444333333333333333333333333333
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.11 Score=59.03 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 91 RIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 91 ~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
+...+..++..|+.+++.+.-.|......+-+.++++..+.+..+.++.+++..+.++.+++.+
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445555555555555555555555555555555555554444
No 37
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.40 E-value=0.74 Score=57.59 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=46.3
Q ss_pred chhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 045360 42 QWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQ 121 (544)
Q Consensus 42 ~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~ 121 (544)
.+.++...+.++...+......|......-.++...|.+.......+...-.++..+-..+...+...+.+|+.+..++.
T Consensus 67 ~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~ 146 (1822)
T KOG4674|consen 67 RLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENK 146 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444445555555555555555555555554444444444444445555555555
Q ss_pred hHHHHHHHHHHhHHH
Q 045360 122 LKESELNLLSVSLDL 136 (544)
Q Consensus 122 ~~~~El~~l~~~le~ 136 (544)
.++.++.+....+-.
T Consensus 147 ~l~~ql~ss~~~~~e 161 (1822)
T KOG4674|consen 147 DLNDQLKSSTKTLSE 161 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555443333
No 38
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.39 E-value=0.063 Score=53.95 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=43.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 80 SKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 80 s~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
.+..+.+.+..++.+....+...+.++..+.+.+.....++....+++..+...+..+...+...++.+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666666667777777777766666666666555555555
No 39
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.44 Score=52.94 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=57.5
Q ss_pred HhhchhhhHHhhhhhHH----HHHHhhH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 39 FTVQWKDLEKHFDLGKK----SLEKQSN---DVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQK 111 (544)
Q Consensus 39 ~~~~~~~~e~~~~s~~~----~ie~~~~---el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~ 111 (544)
++--|.++...|.-... .|+.+-+ +|..+-..++....-++++.+....|++-+.-+..-+.+++..-+.+.+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 67778888777766553 3333322 2222223333333444555555555666555555555555555555556
Q ss_pred HHHhhHHHhhhHHHHHHHHHHhHHHHHHHH
Q 045360 112 MIGECDCELQLKESELNLLSVSLDLKREEL 141 (544)
Q Consensus 112 eI~e~~kEi~~~~~El~~l~~~le~~~~el 141 (544)
.++.+..++..++-|+..++...+.++.-+
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555555443
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.27 E-value=0.51 Score=52.94 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=25.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045360 282 KYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIK 340 (544)
Q Consensus 282 ~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~ 340 (544)
.+...+.....+.+..+.+......++...+.+.+...-.+...+..+..-.++++-.+
T Consensus 369 ~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 369 ELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444333
No 41
>PRK11637 AmiB activator; Provisional
Probab=97.19 E-value=0.5 Score=51.50 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHH
Q 045360 293 EYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNELN 358 (544)
Q Consensus 293 e~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~ 358 (544)
++......++....++.....+.+.....|+....+-......|.+..+.....+..++..+..+.
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444455555555555555555444444
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.19 E-value=0.64 Score=52.65 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 193 IALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKEL 252 (544)
Q Consensus 193 Le~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel 252 (544)
|...+..+..+...|+.+..-|+.--.......+....+...+.........+..++..+
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777777777777666666666666667777777766666666666544
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.16 E-value=1.2 Score=55.05 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 172 IELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELE 243 (544)
Q Consensus 172 ie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe 243 (544)
-+.+..+++.+...+.........+++.+......++.+..++.....++.+....+............++.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555666666666666666666666666666666555555555555544444443
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.09 E-value=0.47 Score=49.21 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=66.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHh-hhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 045360 12 LRAAESKKQALRRSFDIAHEQ-ANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEE 90 (544)
Q Consensus 12 l~~~~~~~~~~~~~~~~i~~~-a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~ 90 (544)
++..+.--..+..-++.+... .+.+ .--|.-++..+..+...|..-..+-....-++.++..++..+...++....
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~---~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEV---SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccC---cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444 1221 223666777777777777777777666666677776666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHH
Q 045360 91 RIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLD 135 (544)
Q Consensus 91 ~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le 135 (544)
....+..++..+.+.+....-..-.+...+..+..++..+....+
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 555555566666655555444445555566666666666654433
No 45
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.07 E-value=1 Score=52.89 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=92.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 045360 211 EEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMK 290 (544)
Q Consensus 211 ~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~k 290 (544)
..|...............+.+..+-+...+.+........+......+|+++..-+......+..+...+..+...+...
T Consensus 442 ~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~ 521 (1195)
T KOG4643|consen 442 QFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTC 521 (1195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333334444566677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 045360 291 EREYNGLKKEVEDLSQELASKDKLLKIFKKSIE------ECSREFQVKKEELSSIKSEIVECSDEVELKRNELNL 359 (544)
Q Consensus 291 eke~e~~~kelee~ekeL~~k~kq~e~~~ke~e------~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~~ 359 (544)
..+|+..-+.++.++..+.-+.++-..+.+.+. .+...|+.-..+++..-+....-++-|.+...+.+.
T Consensus 522 ~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~ 596 (1195)
T KOG4643|consen 522 DIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEK 596 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666666666666666655 345677777788888888888888888877777663
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.9 Score=50.55 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 205 SMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 205 ~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
.-+++.+.++.+........+..+...+-.+..+...+.++.-++.
T Consensus 425 el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~ 470 (581)
T KOG0995|consen 425 ELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELK 470 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555445555555544444443
No 47
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=1.2 Score=52.68 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Q 045360 69 MLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNL 129 (544)
Q Consensus 69 ~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~ 129 (544)
..+++.-.+|.+..+++..+..+.+....++....+..+.+.+++...++.+...+..+..
T Consensus 227 ~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 227 ACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666666666666667777777777777777666666666666666666666665555
No 48
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.94 E-value=1.2 Score=51.32 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 29 AHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGL 108 (544)
Q Consensus 29 i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~ 108 (544)
|.+.++.+|-+.+ +..+..|+....+.-.... .......+++.++.++.....+.+.+...+..+..++...+..+..
T Consensus 171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~~~~~~-~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~ 248 (650)
T TIGR03185 171 LKEAIEVLLGLDL-IDRLAGDLTNVLRRRKKSE-LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248 (650)
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777888 8888888877664422111 1122234555555555555555555555555554444444444443
Q ss_pred H
Q 045360 109 V 109 (544)
Q Consensus 109 ~ 109 (544)
+
T Consensus 249 l 249 (650)
T TIGR03185 249 L 249 (650)
T ss_pred H
Confidence 3
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.76 E-value=0.86 Score=47.08 Aligned_cols=64 Identities=14% Similarity=0.309 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIF 318 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~ 318 (544)
+...|..+.+....+-..+..++...+.+.++....-.+|......+.+.-.++....+.+...
T Consensus 177 ~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 177 IHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555544444444444433
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.72 E-value=1.5 Score=49.26 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=25.1
Q ss_pred hHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045360 46 LEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKEC 95 (544)
Q Consensus 46 ~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~ 95 (544)
.+..+.....++-..-+.+..++..=-..-.+++....-++.|..+++..
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555444444455555555555555555543
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.62 E-value=0.46 Score=44.23 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 171 EIELKEKKLGEVQRLVEEREKQIALK 196 (544)
Q Consensus 171 eie~ke~eLee~~keie~~~eeLe~~ 196 (544)
+...++.++..+...+..++.+|..+
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 52
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.58 E-value=2 Score=48.97 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLL 130 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l 130 (544)
......++..+..+++.+...+.++..++..+...+..+..++.+...+...+..++...
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666666666655555555533
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.55 E-value=3.6 Score=51.63 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHhhhhhhh
Q 045360 17 SKKQALRRSFDIAHEQANSVLK 38 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a~~i~~ 38 (544)
-....+|.|+.-|+..-|+=-.
T Consensus 237 ~~l~~~r~t~~~~~~tq~drdl 258 (1486)
T PRK04863 237 AALRENRMTLEAIRVTQSDRDL 258 (1486)
T ss_pred HHHHHHHHHHHHHHhCccHHHH
Confidence 4567888888888877765443
No 54
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.46 E-value=2.7 Score=49.05 Aligned_cols=187 Identities=21% Similarity=0.213 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 045360 90 ERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCC 169 (544)
Q Consensus 90 ~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~ 169 (544)
..|......+..++.++...+....+-..+-..+++++..+.....+..+-...++.--+..-..+.+...++..+..+.
T Consensus 358 ~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 358 RRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444343344444444556666655443333332221111111111112223344444477777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 170 DEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSI 249 (544)
Q Consensus 170 ~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~ei 249 (544)
.....+-.+.+.+.++++.-+.-+...++....+..++.+++.+....+.....+.+.+++.+.++.....++..++..+
T Consensus 438 ~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 438 QEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78777778888888888887777777777777778888888877777777777777777777777777777777666654
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 250 KEL-LSFRRRVRRRENEVESIERELDSM 276 (544)
Q Consensus 250 eel-~~~e~~ikele~k~~~~ee~L~el 276 (544)
.-+ .+.-.+..++...+...+..+.++
T Consensus 518 ~~~~qs~~~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 518 SNLAQSHNNQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 422 123334444444444444444443
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.45 E-value=2.7 Score=49.06 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=22.6
Q ss_pred HhhchhhhHHhhhhhH-HHHHH--hhHHHHHHHHHHHHH
Q 045360 39 FTVQWKDLEKHFDLGK-KSLEK--QSNDVDMKIMLLDQR 74 (544)
Q Consensus 39 ~~~~~~~~e~~~~s~~-~~ie~--~~~el~~k~~~~e~l 74 (544)
|--|-+|+.+.+..++ ++-|. ...||+.++-+++.+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleql 267 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQL 267 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5566788888888777 55553 336666665444444
No 56
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.38 E-value=0.00086 Score=78.97 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHhhHHHHHHH
Q 045360 334 EELSSIKSEIVECSDEVELKR 354 (544)
Q Consensus 334 ~el~s~~~~~~~~~~ele~k~ 354 (544)
..+++.++.++..+++|..+=
T Consensus 710 ~~le~~k~~LE~q~keLq~rl 730 (859)
T PF01576_consen 710 QHLEKEKKALERQVKELQARL 730 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555444443
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.33 E-value=3.1 Score=48.36 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=28.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045360 280 QKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIF 318 (544)
Q Consensus 280 ~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~ 318 (544)
+-.++..|....++++-....+..++++|..++-.+...
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777776655544
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.29 E-value=3.8 Score=49.06 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 045360 83 SDLVLVEERIKECNFELACK 102 (544)
Q Consensus 83 keie~L~~~iee~~~el~~l 102 (544)
.+|..|-+.|.+.+..|..-
T Consensus 1511 eqi~~L~~~I~e~v~sL~nV 1530 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNV 1530 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccH
Confidence 34444555555544444333
No 59
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.26 E-value=0.0011 Score=78.08 Aligned_cols=100 Identities=20% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 203 IQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKEL----LSFRRRVRRRENEVESIERELDSMKK 278 (544)
Q Consensus 203 l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel----~~~e~~ikele~k~~~~ee~L~el~~ 278 (544)
+...+.++...+...+..+..+......+..+++.....++........+ ..|...+.+|..+.......+..+..
T Consensus 326 L~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 326 LERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544455555555555555443333211 23555556665555444444444444
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHH
Q 045360 279 KQKKYSDDIGMKEREYNGLKKEVE 302 (544)
Q Consensus 279 ~~e~~~kel~~keke~e~~~kele 302 (544)
....+..++-.+...|+.....++
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444444433333333
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.22 E-value=1.4 Score=43.23 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=7.5
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 045360 80 SKESDLVLVEERIKECNFE 98 (544)
Q Consensus 80 s~ekeie~L~~~iee~~~e 98 (544)
.+.+++..++..++++..+
T Consensus 16 ~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKE 34 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 61
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.22 E-value=3.1 Score=47.31 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 045360 79 ESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNC 151 (544)
Q Consensus 79 es~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~ 151 (544)
...+++|..|..++.+....+..+.-.+..-++-+..+....+....-|.......+.+..++..+...++..
T Consensus 236 n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~ 308 (786)
T PF05483_consen 236 NDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQES 308 (786)
T ss_pred hhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554444444444444444443333334444444444444444444444433
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.17 E-value=5.7 Score=49.95 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=8.1
Q ss_pred cCCCCChhHHHH
Q 045360 528 VAPEINAQVRDE 539 (544)
Q Consensus 528 ~~p~i~~~vke~ 539 (544)
--|.++..+|+.
T Consensus 775 ~~p~~gr~are~ 786 (1486)
T PRK04863 775 EVPLFGRAAREK 786 (1486)
T ss_pred CcccccHHHHHH
Confidence 467777777764
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=4.3 Score=47.98 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVN 149 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~e 149 (544)
+.++...+....++++.+-..|+.+...+...+.+.......+.....+++..+++...+...+.-....|..+...+.
T Consensus 680 ~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~ 758 (1200)
T KOG0964|consen 680 LKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444445555555555555555555544444444444444443
No 64
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.04 E-value=4.1 Score=47.10 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH
Q 045360 69 MLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKE 124 (544)
Q Consensus 69 ~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~ 124 (544)
+++-.++..+..++.++..|+.++.++..++..++.-+...+..+.+...+|...+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555555566666666666666555555554444444444444333333333
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.03 E-value=4.1 Score=47.07 Aligned_cols=63 Identities=24% Similarity=0.161 Sum_probs=29.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHH
Q 045360 81 KESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSL 143 (544)
Q Consensus 81 ~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~ 143 (544)
++-++..++.+|..+......++-+++.++..|.-...++...+.++..+..++..+.++++.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444444444444444444444444444433
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.97 E-value=3.7 Score=46.02 Aligned_cols=119 Identities=19% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhc-------hhhhHHhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 045360 19 KQALRRSFDIAHEQANSVLKFTVQ-------WKDLEKHFDLGKKSLEKQS-NDVDMKIMLLDQRAKEIESKESDLVLVEE 90 (544)
Q Consensus 19 ~~~~~~~~~~i~~~a~~i~~~~~~-------~~~~e~~~~s~~~~ie~~~-~el~~k~~~~e~lekEIes~ekeie~L~~ 90 (544)
|+.+...=|++-.-+.-|..|.-+ ...+..-|..-...|-.-+ -|+-.--+.+....++...++.++.+++.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555556666666666654444 4444433333222232222 23333344555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHH
Q 045360 91 RIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLK 137 (544)
Q Consensus 91 ~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~ 137 (544)
.+.++...+....+........+.....-+...+.+++.+..++..+
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 55555555555544444444444444444444444444444443333
No 67
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.97 E-value=1.8 Score=42.38 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=40.6
Q ss_pred chhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 045360 42 QWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQ 121 (544)
Q Consensus 42 ~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~ 121 (544)
+.+++...+.-+...+.+...|.......-.--.+.|...+..-..|-.-|.--..++-.+...++..+.........+.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444333211111222333333333333334444444455555555554455555555555
Q ss_pred hHHHHHHHHHHhHH
Q 045360 122 LKESELNLLSVSLD 135 (544)
Q Consensus 122 ~~~~El~~l~~~le 135 (544)
....++-.+...+.
T Consensus 93 ~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 93 DKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444333
No 68
>PRK09039 hypothetical protein; Validated
Probab=95.95 E-value=1.1 Score=47.50 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=15.2
Q ss_pred hCCChhhHHHHhhcCcCCCCC
Q 045360 482 RARDPASLVLDAMSGFYPPHS 502 (544)
Q Consensus 482 ~a~DPaklVLdai~~f~~~~~ 502 (544)
...+|.++.....+.+.|..+
T Consensus 303 ~Gi~~~ri~~~G~G~~~Pi~~ 323 (343)
T PRK09039 303 LGVPADRLAAAGFGEFQPLDP 323 (343)
T ss_pred CCCCHHHeEEEEeCCcCcCCC
Confidence 467888888777777777654
No 69
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.94 E-value=2.5 Score=43.77 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 045360 398 EDRFQDLEVKERLFE 412 (544)
Q Consensus 398 ~~r~~eLe~kek~~e 412 (544)
+.+.++|.++.+...
T Consensus 241 ~k~ik~l~~~~~~~~ 255 (294)
T COG1340 241 EKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=5.1 Score=46.26 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 202 SIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 202 ~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
.++.++.+++..+...+..+..+...|+..++..+....++..++.+|+
T Consensus 448 tLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444555444444444444444444433
No 71
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.77 E-value=3.4 Score=44.05 Aligned_cols=37 Identities=5% Similarity=0.133 Sum_probs=18.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 211 EEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQS 247 (544)
Q Consensus 211 ~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~ 247 (544)
.+.+++....+..+.+-+....++|........-...
T Consensus 195 ~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q 231 (499)
T COG4372 195 SAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQ 231 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554444443333
No 72
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.68 E-value=5.3 Score=45.56 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred hchhhhHHhhhhhHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 41 VQWKDLEKHFDLGKKSLEKQSNDVDMK-------IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMI 113 (544)
Q Consensus 41 ~~~~~~e~~~~s~~~~ie~~~~el~~k-------~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI 113 (544)
-.|++.++++..+--.+...+-+|+.+ +-+++.+...+....+-++. ...+.-....+.+.+.+|- .-|
T Consensus 370 qr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~e-kk~~eki~E~lq~~eqel~---~ll 445 (786)
T PF05483_consen 370 QRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDE-KKQFEKIAEELQGTEQELT---GLL 445 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHH
Confidence 358889999999998888888888533 34566666665555433332 1223333333333333332 234
Q ss_pred HhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 045360 114 GECDCELQLKESELNLLSVSLDLKREELSLVQESVN 149 (544)
Q Consensus 114 ~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~e 149 (544)
.....++..+.-.|.....+-..+..-+..+...++
T Consensus 446 q~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 446 QIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELE 481 (786)
T ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555556666666666665555555444444444443
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.48 E-value=6 Score=44.91 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045360 258 RVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLL 315 (544)
Q Consensus 258 ~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~ 315 (544)
++.....+...+..+++.|+..++.-.......++........+............++
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666655555555555555544444443333333333333333
No 74
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.32 E-value=4.2 Score=42.10 Aligned_cols=232 Identities=13% Similarity=0.180 Sum_probs=141.6
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 110 QKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEER 189 (544)
Q Consensus 110 ~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~ 189 (544)
-+.|..+...++.+..+-..|..+++.-+..-..++..++++..+ |.+--++.+.+...-..++--+.--..+--.+
T Consensus 55 tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR---LaaAi~d~dqsq~skrdlelafqr~rdEw~~l 131 (305)
T PF14915_consen 55 TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR---LAAAIQDHDQSQTSKRDLELAFQRARDEWVRL 131 (305)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHH
Confidence 467788888888888888888888888777777777888777766 44444444433222222222222222222222
Q ss_pred HHH----HHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 045360 190 EKQ----IALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSF----RRRVRR 261 (544)
Q Consensus 190 ~ee----Le~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~----e~~ike 261 (544)
... +..+...-..++.++......++..+.+++.....+....=-++..++.+.-.+-++++++.+ ...++.
T Consensus 132 qdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k 211 (305)
T PF14915_consen 132 QDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNK 211 (305)
T ss_pred HHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 222 344445556788888888888999999999988888877777788888888777776655422 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHhh
Q 045360 262 RENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSRE----FQVKKEELS 337 (544)
Q Consensus 262 le~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~----~~~~~~el~ 337 (544)
+.-+..+.+++| ..+..+=-.+.++++...+.....++-+-..+.++..+++.|..-.+. ++.+-++|.
T Consensus 212 ~~~Kqes~eERL-------~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ 284 (305)
T PF14915_consen 212 YIGKQESLEERL-------SQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELI 284 (305)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444333333 333445555666666666666666666777777777776666543333 555555555
Q ss_pred hhHHHHHHhhHHHH
Q 045360 338 SIKSEIVECSDEVE 351 (544)
Q Consensus 338 s~~~~~~~~~~ele 351 (544)
..=.++.+++=-.|
T Consensus 285 ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 285 NECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544333
No 75
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.00 E-value=8.3 Score=43.75 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=37.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 045360 281 KKYSDDIGMKEREYNGLKKEVEDLSQ---ELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNEL 357 (544)
Q Consensus 281 e~~~kel~~keke~e~~~kelee~ek---eL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~ 357 (544)
..+.+.+......|......+..... .+...-.........++.....|...+..|..-+......+..|..+=...
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555444444432111 222222223333334444455666666666666666666666666553333
No 76
>PRK09039 hypothetical protein; Validated
Probab=94.91 E-value=6.3 Score=41.94 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=4.9
Q ss_pred ChhhHHHHhhc
Q 045360 485 DPASLVLDAMS 495 (544)
Q Consensus 485 DPaklVLdai~ 495 (544)
.=|.-|.+.|-
T Consensus 291 ~RA~aV~~~Li 301 (343)
T PRK09039 291 ARAISVVKFLI 301 (343)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 77
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.87 E-value=5.8 Score=41.40 Aligned_cols=104 Identities=14% Similarity=0.258 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 045360 207 IEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDD 286 (544)
Q Consensus 207 l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~~e~~~ke 286 (544)
+.+|+.+|..-+.++......+.....+...-+.++..+..+|.. .+.+++.+..+-......|......-..+..+
T Consensus 201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd---lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD---LQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665555555555555555444443332 24455555555555555555555555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 287 IGMKEREYNGLKKEVEDLSQELASKDK 313 (544)
Q Consensus 287 l~~keke~e~~~kelee~ekeL~~k~k 313 (544)
+......|.+..+.+.+...+++.+++
T Consensus 278 L~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 278 LQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 777777887777777777777776654
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.86 E-value=10 Score=44.15 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 045360 302 EDLSQELASKDKLLKIFKKSIEECSREFQVKKEEL 336 (544)
Q Consensus 302 ee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el 336 (544)
..+++.|..-.+=+-.+..-|....++++-....+
T Consensus 604 ~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 604 QHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQL 638 (697)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444444433333
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.86 E-value=3.3 Score=38.47 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhH
Q 045360 87 LVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSL 134 (544)
Q Consensus 87 ~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~l 134 (544)
-|+.++..+..++...+.....+-.+-++...++.+...++..+...+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el 68 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSEL 68 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 80
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.85 E-value=14 Score=45.47 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHH
Q 045360 294 YNGLKKEVEDLSQELASKDKLLKIFK-KSIEECSREFQVKKEELSSIKSEIVECSDEVELKR 354 (544)
Q Consensus 294 ~e~~~kelee~ekeL~~k~kq~e~~~-ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~ 354 (544)
|..+...+.+.+.++.....|+-... ..+...-.-|.....-+-|....+.+.++++++--
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i 1071 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQI 1071 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 34444445555555555555554443 33444455566666667777777777777776643
No 81
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.74 E-value=9.5 Score=43.16 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSM----IEEYEEELKAKEKSYDEVKKSLRLCETKLECKKK 240 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~----l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~k 240 (544)
..++..+-.....++..+.+.+..+...+.....++-.+... .....++++.....|+..+.++.....+.+++..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443322222 4444556666666666666666666666666665
Q ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 241 ELERTQSSIK------------ELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQEL 308 (544)
Q Consensus 241 eLe~~~~eie------------el~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL 308 (544)
++...-.... .+-+.+..|..+-..+.+.+.-+ -..++.....+..++++.......++++.+.|
T Consensus 264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~---~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL---VEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553322211 11122222222222222222221 12334445555555555555555555555555
Q ss_pred HHHHHhHHHHHHHHH
Q 045360 309 ASKDKLLKIFKKSIE 323 (544)
Q Consensus 309 ~~k~kq~e~~~ke~e 323 (544)
... ..|+.+.+||-
T Consensus 341 ~~~-sDYeeIK~ELs 354 (629)
T KOG0963|consen 341 NSR-SDYEEIKKELS 354 (629)
T ss_pred hhh-ccHHHHHHHHH
Confidence 544 45555555554
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.63 E-value=3.8 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=7.2
Q ss_pred chhhhHHhhhhhHHHHH
Q 045360 42 QWKDLEKHFDLGKKSLE 58 (544)
Q Consensus 42 ~~~~~e~~~~s~~~~ie 58 (544)
.|+..+.+-+|++..|+
T Consensus 11 kLK~~~~e~dsle~~v~ 27 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVE 27 (140)
T ss_pred HHHHHHHhHhhHHHHHH
Confidence 34444444444443333
No 83
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=11 Score=43.48 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=13.4
Q ss_pred hhhhhhhHHhHHHHHHHHHHHHHhhhhhhh
Q 045360 9 SEELRAAESKKQALRRSFDIAHEQANSVLK 38 (544)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~i~~~a~~i~~ 38 (544)
.+.+..+..+.+++-+..+...-.+-+|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~e~~k~~di~~ 367 (698)
T KOG0978|consen 338 RSKLLESAKKLKILLREKDRESQKERDILV 367 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHhHHH
Confidence 334444444444444444444444444443
No 84
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.60 E-value=14 Score=44.41 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=5.9
Q ss_pred HHHHHHHhhhhhcCC
Q 045360 516 RSCILLLEHLLTVAP 530 (544)
Q Consensus 516 ~~cilLLE~L~~~~p 530 (544)
..-+-+|+.+...+|
T Consensus 860 ~~l~~~l~~i~~~~~ 874 (908)
T COG0419 860 EKLAEILEELLSDGR 874 (908)
T ss_pred HHHHHHHHHHHhcCC
Confidence 333334444433333
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.52 E-value=15 Score=44.44 Aligned_cols=117 Identities=11% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 111 KMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEERE 190 (544)
Q Consensus 111 ~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~ 190 (544)
..|..+.-+|+.+-..|..+..-+..-...+....++..+..+- ...-+.++...+...
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a---------------------~~~A~~v~~~ae~V~ 1569 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA---------------------RSRAEDVKGQAEDVV 1569 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH---------------------HhHHHHHHHHHHHHH
Confidence 44444555555554445445444444444455444444333222 122223333344444
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 191 KQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSS 248 (544)
Q Consensus 191 eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~e 248 (544)
+.|++.+..+.....-|.+....+.....-+...++...+.++.+-..-.++..+.+.
T Consensus 1570 eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1570 EALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555555555555555555444444444444444333
No 86
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.51 E-value=14 Score=44.25 Aligned_cols=12 Identities=0% Similarity=0.144 Sum_probs=6.7
Q ss_pred CCChhHHHHHhh
Q 045360 531 EINAQVRDEALK 542 (544)
Q Consensus 531 ~i~~~vke~A~~ 542 (544)
..+|+.++.+..
T Consensus 853 ~LD~e~l~~l~~ 864 (908)
T COG0419 853 TLDEERLEKLAE 864 (908)
T ss_pred CCCHHHHHHHHH
Confidence 346666665543
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=7 Score=40.03 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045360 29 AHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKEC 95 (544)
Q Consensus 29 i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~ 95 (544)
|+.+=+.|-.++-.-.+++..++++-.+|+.-........+.+.....+|..++++|..+..+|.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444444444443
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.26 E-value=5.5 Score=41.95 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhh
Q 045360 21 ALRRSFDIAHEQA 33 (544)
Q Consensus 21 ~~~~~~~~i~~~a 33 (544)
.-|++|..|...+
T Consensus 86 egr~~~~~~E~~~ 98 (325)
T PF08317_consen 86 EGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 89
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.18 E-value=6.5 Score=38.92 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=34.0
Q ss_pred hhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 115 ECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIA 194 (544)
Q Consensus 115 e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe 194 (544)
+..+.......++..+....++....+..+...+-++-.+ ++-++.-++++...-+.+.+-+.+....+......+.
T Consensus 59 e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~r---yek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 59 EKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKR---YEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555555444 2222222444433333333333333333443334444
Q ss_pred HH
Q 045360 195 LK 196 (544)
Q Consensus 195 ~~ 196 (544)
.+
T Consensus 136 aL 137 (207)
T PF05010_consen 136 AL 137 (207)
T ss_pred HH
Confidence 33
No 90
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.16 E-value=15 Score=43.22 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 045360 108 LVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVN 149 (544)
Q Consensus 108 ~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~e 149 (544)
.+...+..+.++|...+.+......-.+....++.....-++
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iE 314 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIE 314 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555555555555544444
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.06 E-value=16 Score=42.99 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=6.5
Q ss_pred hHHHHHHHHhhhh
Q 045360 514 IRRSCILLLEHLL 526 (544)
Q Consensus 514 ~r~~cilLLE~L~ 526 (544)
+--+|+.||++.+
T Consensus 789 iL~~ct~lm~aI~ 801 (980)
T KOG0980|consen 789 ILSACTALMEAIM 801 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.76 E-value=10 Score=39.68 Aligned_cols=95 Identities=13% Similarity=0.205 Sum_probs=51.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 198 SKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMK 277 (544)
Q Consensus 198 ~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~ 277 (544)
.+|...+.++..++.+|..+.-.+..+++.|..+-..+-..++.+.....+-+++ ...+...+.-......+|.++.
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL---~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL---QQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777776666665555555444433333 2223333333333444455554
Q ss_pred HHHhhHhhHHHHHHHHHH
Q 045360 278 KKQKKYSDDIGMKEREYN 295 (544)
Q Consensus 278 ~~~e~~~kel~~keke~e 295 (544)
.+......-+...+.++.
T Consensus 283 dkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 283 DKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 93
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.59 E-value=23 Score=43.19 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 045360 69 MLLDQRAKEIESKESDLVLVEERIKECN 96 (544)
Q Consensus 69 ~~~e~lekEIes~ekeie~L~~~iee~~ 96 (544)
..+..++.....++..+..++.+..++.
T Consensus 458 ~~~~~~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 458 QAVAELEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555554
No 94
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.50 E-value=9.1 Score=40.22 Aligned_cols=43 Identities=21% Similarity=0.046 Sum_probs=20.4
Q ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 045360 108 LVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNN 150 (544)
Q Consensus 108 ~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee 150 (544)
.++.+-..+.+.++....-+..+..+...+..++...+....+
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444445555555555555554444444433
No 95
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.93 E-value=24 Score=41.57 Aligned_cols=23 Identities=17% Similarity=-0.041 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHh
Q 045360 18 KKQALRRSFDIAHEQANSVLKFT 40 (544)
Q Consensus 18 ~~~~~~~~~~~i~~~a~~i~~~~ 40 (544)
..+.++..+.+||+-.+.+-.|.
T Consensus 500 ~s~eL~~avskIsEfv~~LekeV 522 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEV 522 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444433333333
No 96
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.77 E-value=10 Score=36.99 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHH
Q 045360 84 DLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLK 137 (544)
Q Consensus 84 eie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~ 137 (544)
.+..|..+|..+..++..-+..+......+.+..+......+....+..+..+.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kd 58 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKL 58 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555544445544444444444444444444333
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.46 E-value=14 Score=37.83 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045360 179 LGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECK 238 (544)
Q Consensus 179 Lee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k 238 (544)
+..+.+.....+.+|..+..++..+..+++....++...+..+...+..|...+..+..+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 98
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.42 E-value=30 Score=41.43 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhh--HHHHHHHHHHHHHHHHHH
Q 045360 96 NFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQ--KKMELLKNLLEKCCDEIE 173 (544)
Q Consensus 96 ~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~--~~l~~~~~~lE~~~~eie 173 (544)
+.+|..+.+....+.+....+...++.++.+...+....+.+..+. .....++.+..+. .++....++...+.....
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~ 258 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKKKWVEYKKHDREYNAYKQAKD 258 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHhhhHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555544444331 1111222221111 011122222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 174 LKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQS 247 (544)
Q Consensus 174 ~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~ 247 (544)
.+.+++..+.+.+.-.....+.++........++.....+++.-...+....+++....+.+..+..+++++.+
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333333333333333333444444445555555555555555555555555555555544433
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.97 E-value=22 Score=38.83 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045360 49 HFDLGKKSLEKQSNDVDMKIMLLDQRAKEIES 80 (544)
Q Consensus 49 ~~~s~~~~ie~~~~el~~k~~~~e~lekEIes 80 (544)
+++.+.++|+...+.+....+....|+.+|.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~ 70 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKS 70 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 100
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.96 E-value=16 Score=37.19 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHhHHHHHHHHHHHHHhHHHHHHHHHHH-------
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKIS------SIQSMIEEYEEELKAKEKSYDEVKKSLRLC------- 231 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~------~l~~~l~e~~~EL~~ke~el~~~~~~le~~------- 231 (544)
-.-+...+..++.+..+...+|..+.....=.-..++ .+.--|..++.++..+...+.+.++.+.+.
T Consensus 131 E~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~ 210 (330)
T KOG2991|consen 131 ENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSK 210 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCc
Confidence 3445667777777777777777777666443333332 244456666777777777788887777652
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 232 -ETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELAS 310 (544)
Q Consensus 232 -~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~ 310 (544)
-+.|=.+.+.|-.--.+|- -.-.+++|.+++-++..--..-.++....+.+-+=+..+....+++..-|--+...|+.
T Consensus 211 tGK~LMAKCR~L~qENeElG-~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lke 289 (330)
T KOG2991|consen 211 TGKMLMAKCRTLQQENEELG-HQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKE 289 (330)
T ss_pred chHHHHHHHHHHHHHHHHHH-hhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2334444444421111111 01135566666666554444444555555555555555555555555555556666666
Q ss_pred HHHhHHHHHHHHH
Q 045360 311 KDKLLKIFKKSIE 323 (544)
Q Consensus 311 k~kq~e~~~ke~e 323 (544)
.++.++.+.|+++
T Consensus 290 tr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 290 TRKEIQRLKKGLE 302 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655553
No 101
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.94 E-value=37 Score=41.47 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=6.2
Q ss_pred hhhCCChhhHHHHh
Q 045360 480 IKRARDPASLVLDA 493 (544)
Q Consensus 480 L~~a~DPaklVLda 493 (544)
+....+-.+.|+-|
T Consensus 973 fs~~~~~e~~v~~a 986 (1317)
T KOG0612|consen 973 FSKKLVTERDVKHA 986 (1317)
T ss_pred HHhhhhhHHHHHHH
Confidence 34444444444444
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.46 E-value=15 Score=36.06 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEEL 214 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL 214 (544)
+..+...+...++++..+.-+.+.+...+...+.....+...|.....++
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555444444444444433333
No 103
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.38 E-value=0.26 Score=57.43 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=16.2
Q ss_pred cccchhhhHHHHHHhhhhhHhhHHHHHH
Q 045360 451 LTSKGRNLQLLLNQHLQKHDLIFSKIFN 478 (544)
Q Consensus 451 l~md~~gL~~f~~~~~ke~~~lr~ei~~ 478 (544)
|+++..+-..++. ...++.|+.|.-+
T Consensus 552 lr~NP~~~~~~~k--~~~l~~L~~En~~ 577 (722)
T PF05557_consen 552 LRDNPTSKAEQIK--KSTLEALQAENED 577 (722)
T ss_dssp ESS-HHHHHHHHH--HHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHH--HHHHHHHHHHHHH
Confidence 4666666666654 4578888886544
No 104
>PRK10869 recombination and repair protein; Provisional
Probab=91.25 E-value=31 Score=39.17 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHHHH---hhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 045360 17 SKKQALRRSFDIAHE---QANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRA 75 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~---~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~le 75 (544)
++..+-+.++|.+-. ....+-..--.|+++...+..+..+......+++....+++++.
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666432 23333345566777777777776665555555555555555443
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.24 E-value=9.9 Score=34.40 Aligned_cols=96 Identities=26% Similarity=0.379 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGL---KKEVEDLSQELASKDKLLKIFKKSIEECSREFQV 331 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~---~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~ 331 (544)
+...++.++.++..+..++..+...++.+..++..+-...++. ...+..+..++..++..+....--++.|..+.+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4445555555566666666666666666666666665555433 4555678888888888888888888888888888
Q ss_pred HHHHhhhhHHHHHHhhHHH
Q 045360 332 KKEELSSIKSEIVECSDEV 350 (544)
Q Consensus 332 ~~~el~s~~~~~~~~~~el 350 (544)
-..++.-.+.-|..++..+
T Consensus 101 L~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 101 LRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888777777654
No 106
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.12 E-value=11 Score=34.20 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 045360 166 EKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEE 209 (544)
Q Consensus 166 E~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e 209 (544)
..+..++..+..+.+..=..+.+..++++++...+..+...|..
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444433
No 107
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.09 E-value=32 Score=39.09 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHH
Q 045360 324 ECSREFQVKKEELSSIKSEIVECSDEVELKRNELN 358 (544)
Q Consensus 324 ~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~ 358 (544)
.+++.|...+-.|.+....+.+++-++.-+=.++.
T Consensus 383 ~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~ 417 (629)
T KOG0963|consen 383 EKNRKLQNENASLRVANSGLSGRITELSKKGEELE 417 (629)
T ss_pred HHHhhhhHHHHHHhccccccchhHHHHHhhhhhhH
Confidence 56777777777777777777776666655544444
No 108
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.08 E-value=9.9 Score=35.26 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLL 130 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l 130 (544)
+..+..++..+...+..++.+++.+..++...+.....+...+......++....++..+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444444443333
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=39 Score=39.64 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKI 200 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l 200 (544)
..++..+++.++.++.....++..+.+++..++.+|
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444443
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.67 E-value=18 Score=35.37 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045360 56 SLEKQSNDVDMK----IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKEL 106 (544)
Q Consensus 56 ~ie~~~~el~~k----~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql 106 (544)
++..|+++|+.- .-....+...|+..+..-..|...|..+...+..++.-+
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555332 123444555555555444555555555555544444333
No 111
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.64 E-value=35 Score=38.76 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045360 258 RVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI 322 (544)
Q Consensus 258 ~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~ 322 (544)
++............+++.||..++.-........+.......-+......-..+..+++.+....
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555556666666666655555555555555554444444444444444444444443333
No 112
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.58 E-value=45 Score=39.98 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHH---HHHHHHH-------Hhh
Q 045360 14 AAESKKQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQ---RAKEIES-------KES 83 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~---lekEIes-------~ek 83 (544)
++|++ .++|..-..+.++++-++.+.--..|++..|+-+...+++=.-+-.+..+-..+ +....+. .--
T Consensus 179 lAdle-~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlm 257 (1195)
T KOG4643|consen 179 LADLE-KKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLM 257 (1195)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhh
Confidence 34443 456666777777777777777777777777777666665333222221111111 1000000 001
Q ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHH---------HHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 045360 84 DLVLVEERIKECNFE-------LACKQKELGLV---------QKMIGECDCELQLKESELNLLSVSLDLKREELSLVQES 147 (544)
Q Consensus 84 eie~L~~~iee~~~e-------l~~le~ql~~~---------~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~ 147 (544)
+++-++.+.+++..+ +.-+++||+.+ ..+|-.|.+.+.....+....+.+++.+..+.+..+..
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 112233444443332 44445555432 24555666666666666666666666666665554444
Q ss_pred hhhh
Q 045360 148 VNNC 151 (544)
Q Consensus 148 ~ee~ 151 (544)
-..+
T Consensus 338 ~eqL 341 (1195)
T KOG4643|consen 338 KEQL 341 (1195)
T ss_pred HHHh
Confidence 4433
No 113
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.52 E-value=35 Score=38.54 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045360 279 KQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQ 330 (544)
Q Consensus 279 ~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~ 330 (544)
........|..++.++..++.+...+.-+|..+-.-.-.+..|+.--.+=++
T Consensus 336 ~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 336 DQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 3456666777777777777777777777777777766666666664333333
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.45 E-value=38 Score=38.84 Aligned_cols=36 Identities=11% Similarity=0.323 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMK 290 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~k 290 (544)
+..+|.++-..++.-..++.-+-..--.+.++++.+
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333333333
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.17 E-value=5 Score=39.03 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=0.0
Q ss_pred hhhhHHhHHHH
Q 045360 12 LRAAESKKQAL 22 (544)
Q Consensus 12 l~~~~~~~~~~ 22 (544)
|+.-|.+...|
T Consensus 9 L~~Rd~~e~~~ 19 (194)
T PF08614_consen 9 LRERDRREKAF 19 (194)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 33333333333
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=45 Score=39.17 Aligned_cols=65 Identities=22% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHH
Q 045360 76 KEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREE 140 (544)
Q Consensus 76 kEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~e 140 (544)
+..+.+...+-.+++-|-++.-++.+++.....+..++++++.++.....+..++....+.++..
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666656666655555555555555555555555555554444444333
No 117
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.99 E-value=60 Score=39.04 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 290 KEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQV 331 (544)
Q Consensus 290 keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~ 331 (544)
..++|+-+..+|.+++..+......++.+++++-+-...+..
T Consensus 861 ~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~ 902 (1072)
T KOG0979|consen 861 AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLP 902 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHH
Confidence 667788888888888888888888888887777544443333
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.72 E-value=38 Score=36.46 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 045360 266 VESIERELDSMKKKQKKYSDDIGMKEREYN 295 (544)
Q Consensus 266 ~~~~ee~L~el~~~~e~~~kel~~keke~e 295 (544)
++.-++.+..++....-++.++..++..|.
T Consensus 254 I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 254 IRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555455555556666666664
No 119
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.55 E-value=30 Score=35.12 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=21.5
Q ss_pred hhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045360 33 ANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIES 80 (544)
Q Consensus 33 a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes 80 (544)
=++|-.++-+|+..-.-++..+..+..--.++.....+++.+......
T Consensus 23 ~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~ 70 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATK 70 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555554444443333344444444444444333
No 120
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.52 E-value=16 Score=36.82 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Q 045360 61 SNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLL 130 (544)
Q Consensus 61 ~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l 130 (544)
++++..|-.+++.+..+|-.....++.-..-|.++..+.+.|..+-..+..+|.....+|+..++.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444444444444444444444444444444444444444444333333
No 121
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.04 E-value=28 Score=34.17 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 045360 235 LECKKKELE 243 (544)
Q Consensus 235 Le~k~keLe 243 (544)
++.+..+|.
T Consensus 159 lE~keaqL~ 167 (201)
T PF13851_consen 159 LEKKEAQLN 167 (201)
T ss_pred HHHHHHHHH
Confidence 333333333
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=19 Score=40.84 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhchhhhH
Q 045360 20 QALRRSFDIAHEQANSVLKFTVQWKDLE 47 (544)
Q Consensus 20 ~~~~~~~~~i~~~a~~i~~~~~~~~~~e 47 (544)
..|...|.+|...+|+... |.|.+
T Consensus 355 ~~yk~kl~~vEr~~~~~g~----~~d~~ 378 (652)
T COG2433 355 LAYKPKLEKVERKLPELGI----WKDVE 378 (652)
T ss_pred HHHHHHHHHHHHhcccccc----hhhHH
Confidence 4567778888888887755 77764
No 123
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.61 E-value=53 Score=36.84 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=33.5
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045360 281 KKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNELNLI 360 (544)
Q Consensus 281 e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~~~ 360 (544)
....+++.+....+......+.....-....+..++...+-|..++.+-..-...|.+.+++=-.--..++-..+.+-.+
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544433334444444444444333333333333333333333333333333333333333
Q ss_pred Hh
Q 045360 361 QH 362 (544)
Q Consensus 361 ~~ 362 (544)
-+
T Consensus 430 kR 431 (570)
T COG4477 430 KR 431 (570)
T ss_pred HH
Confidence 33
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.58 E-value=50 Score=36.48 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH------
Q 045360 160 LLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALK---DSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRL------ 230 (544)
Q Consensus 160 ~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~---e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~------ 230 (544)
++-..++.+..+++.++.++..++..++++...+... -+.|+.+.....++..+|+..+.+.....+.|..
T Consensus 327 ~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 3334466666777777777777777777777766543 2445566666666666666666666555554443
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q 045360 231 -CETKLECKKKELERTQSSI 249 (544)
Q Consensus 231 -~~keLe~k~keLe~~~~ei 249 (544)
.-+.++.+-+++.++..+|
T Consensus 407 ~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 407 GIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 3333444444455554444
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.08 E-value=11 Score=39.68 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELER 244 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~ 244 (544)
+..+..+...+..+|..+.++...+..++..++.....+...-...-..++....++.+..+...+....+.+-..+++.
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555554455555666666666666666666666555555555543
Q ss_pred H
Q 045360 245 T 245 (544)
Q Consensus 245 ~ 245 (544)
+
T Consensus 132 L 132 (314)
T PF04111_consen 132 L 132 (314)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.04 E-value=32 Score=33.70 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhh
Q 045360 126 ELNLLSVSLDLKREELSLVQESVNN 150 (544)
Q Consensus 126 El~~l~~~le~~~~el~~~~~~~ee 150 (544)
++..+..++..+..++...+.++..
T Consensus 5 ~va~lnrri~~leeele~aqErl~~ 29 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLAT 29 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.82 E-value=24 Score=32.10 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 194 ALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQS 247 (544)
Q Consensus 194 e~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~ 247 (544)
......+.........+...|..--..+....+.+..++.++......+..+..
T Consensus 27 ~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 27 QSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444444444443333
No 128
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.69 E-value=24 Score=35.51 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 045360 82 ESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNC 151 (544)
Q Consensus 82 ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~ 151 (544)
++-+.++.+.++.+..+....-++|+.+..+|...+..|...+.+.......+..+..+.......++.+
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555566666667777777777777777777777777777766666655555544444443
No 129
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.11 E-value=48 Score=34.81 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=33.2
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 045360 280 QKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNELNL 359 (544)
Q Consensus 280 ~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~~ 359 (544)
+..+..-+.---.-|.+.+.+++.+.+.+..+.++-.....-.+.+..-+-. +...+....+.+.-+..+-..|++
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~----m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE----MAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444333333333333322222 222233334444444445555555
Q ss_pred HHhhh
Q 045360 360 IQHAS 364 (544)
Q Consensus 360 ~~~~~ 364 (544)
+|+.+
T Consensus 301 LcRaL 305 (309)
T PF09728_consen 301 LCRAL 305 (309)
T ss_pred HHHHH
Confidence 55543
No 130
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.93 E-value=0.44 Score=55.46 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHhh
Q 045360 17 SKKQALRRSFDIAHEQANSVLKFTV 41 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a~~i~~~~~ 41 (544)
+|..||.+++..|-+-..++|.-++
T Consensus 67 lr~~NLk~l~~~i~~yy~e~L~~~i 91 (713)
T PF05622_consen 67 LRVSNLKKLLRNIKSYYQEELGQQI 91 (713)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 5889999999888888877776444
No 131
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.77 E-value=9.9 Score=36.95 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 045360 170 DEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEK 219 (544)
Q Consensus 170 ~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~ 219 (544)
.++..+.+-++.++.++..+.-++...+..+..+...-..+...|-.+..
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444555554555445555554444433
No 132
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.53 E-value=51 Score=34.60 Aligned_cols=15 Identities=47% Similarity=0.804 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKL 179 (544)
Q Consensus 165 lE~~~~eie~ke~eL 179 (544)
++.+|.++..-.+.+
T Consensus 76 LE~LCRELQk~Nk~l 90 (309)
T PF09728_consen 76 LESLCRELQKQNKKL 90 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.52 E-value=61 Score=35.46 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=14.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045360 202 SIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKL 235 (544)
Q Consensus 202 ~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keL 235 (544)
.+...+.+....|...-..+..+...+.....++
T Consensus 154 ~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l 187 (420)
T COG4942 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAEL 187 (420)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.47 E-value=83 Score=36.97 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 045360 70 LLDQRAKE 77 (544)
Q Consensus 70 ~~e~lekE 77 (544)
.++.+.++
T Consensus 544 a~~vlree 551 (717)
T PF10168_consen 544 ATKVLREE 551 (717)
T ss_pred HHHHHHHH
Confidence 33444433
No 135
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=80 Score=36.75 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHH
Q 045360 21 ALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLE 58 (544)
Q Consensus 21 ~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie 58 (544)
.|+.....|++-.+.+-.-.=.|++.+.|-.+++.+.-
T Consensus 266 e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~ 303 (698)
T KOG0978|consen 266 EMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHS 303 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34444444455444444455567777777777774444
No 136
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.28 E-value=73 Score=36.14 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHhh---hhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045360 17 SKKQALRRSFDIAHEQA---NSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQR 74 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a---~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~l 74 (544)
++..+-+..+|.+-... ..+-..--.|+++...+............+++....+++++
T Consensus 141 ~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 141 FRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred cCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34556667777654421 11222334455555555444444444444444444343333
No 137
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.98 E-value=42 Score=33.13 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 045360 63 DVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESE 126 (544)
Q Consensus 63 el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~E 126 (544)
|+-..+.++.+...++.....+|--|+..+.+....+.....++..+...+.....++..-.++
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~E 74 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENE 74 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHH
Confidence 5555667777777777777777777777777777776666666665544333333333333333
No 138
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.91 E-value=52 Score=35.36 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
|..+-..|.....+|+.....+.+....|......|.....+|+.+..+++
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555544
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.76 E-value=91 Score=36.00 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=11.2
Q ss_pred HHHHHHHHh---hHHHHhhHHHHHHHHHHH
Q 045360 381 RELKEKEKL---FDSLKKGLEDRFQDLEVK 407 (544)
Q Consensus 381 ~~~~~k~~~---f~sle~~l~~r~~eLe~k 407 (544)
.+|+|.+.- |.+.-..++.-...|...
T Consensus 339 Ed~es~E~m~~f~~~a~~~~eeEr~~L~~q 368 (617)
T PF15070_consen 339 EDLESREAMVEFFNSALAQAEEERARLRRQ 368 (617)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444332 444444444434443333
No 140
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.69 E-value=1.3e+02 Score=37.57 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=34.8
Q ss_pred ccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCChhhHHHHhhcCcCCC
Q 045360 452 TSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDPASLVLDAMSGFYPP 500 (544)
Q Consensus 452 ~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DPaklVLdai~~f~~~ 500 (544)
.|+...+-.|+.......++.-+++..|+..-++.-+- .+++..|-|.
T Consensus 683 ~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~-~e~l~~~~~~ 730 (1294)
T KOG0962|consen 683 SFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKI-FEILLKLKPT 730 (1294)
T ss_pred ccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHHHHhhhhH
Confidence 68888888888877777777777777777777776555 6666666554
No 141
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.67 E-value=65 Score=34.61 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=11.5
Q ss_pred HHHHhhHHHhhhHHHHHHHH
Q 045360 111 KMIGECDCELQLKESELNLL 130 (544)
Q Consensus 111 ~eI~e~~kEi~~~~~El~~l 130 (544)
..+-+........+.|+..+
T Consensus 184 ~~i~es~vd~~eWklEvERV 203 (359)
T PF10498_consen 184 EEIIESKVDPAEWKLEVERV 203 (359)
T ss_pred hhcccccCCHHHHHHHHHHH
Confidence 44455555556666666655
No 142
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.42 E-value=85 Score=35.39 Aligned_cols=40 Identities=30% Similarity=0.523 Sum_probs=29.3
Q ss_pred cchhhhHHHHHHhhhhhHhhHHHHHHhhhhCC-Ch-----hhHHHHhh
Q 045360 453 SKGRNLQLLLNQHLQKHDLIFSKIFNTIKRAR-DP-----ASLVLDAM 494 (544)
Q Consensus 453 md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~-DP-----aklVLdai 494 (544)
=+|++.+.| +..-.++-|=+.-|.|.-.|+ || |++.|..|
T Consensus 222 reGrnir~~--e~~tgvd~iiddtp~~v~ls~fdp~rreia~~~l~~l 267 (514)
T TIGR03319 222 REGRNIRAL--ETLTGVDLIIDDTPEAVILSGFDPVRREIARMALEKL 267 (514)
T ss_pred CCcchHHHH--HHHhCceEEEcCCCCeEEecCCchHHHHHHHHHHHHH
Confidence 567777777 555567777778888877666 88 77777766
No 143
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.31 E-value=62 Score=33.76 Aligned_cols=123 Identities=14% Similarity=0.252 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 045360 179 LGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK----ELLS 254 (544)
Q Consensus 179 Lee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie----el~~ 254 (544)
+..+....+.+...|...+..+..+...+-.....|..+..-+...+..+..-.-.+.....-...-+..+. .-.+
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334455556666667777777777766666666666666666655555444433333222222222222222 3346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEV 301 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kel 301 (544)
+++++.++.++---+..+|.....+.....+-+--...+|..+...+
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 78889999999888889998888877777777777777776665554
No 144
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.76 E-value=1.5e+02 Score=37.63 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=3.9
Q ss_pred cchhhhHHHH
Q 045360 453 SKGRNLQLLL 462 (544)
Q Consensus 453 md~~gL~~f~ 462 (544)
+|++-|+..+
T Consensus 1166 ~~t~~~~~~L 1175 (1353)
T TIGR02680 1166 PTGLALRRLL 1175 (1353)
T ss_pred hhHHHHHHHH
Confidence 4433344333
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.47 E-value=1e+02 Score=35.62 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045360 177 KKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETK 234 (544)
Q Consensus 177 ~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~ke 234 (544)
..++.+...+......|+.+...+..+..+.+.+..-|..+...+.......+.+.+.
T Consensus 202 ~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 202 KKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666655555666666666666666655554444444444433
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.83 E-value=73 Score=33.54 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 214 LKAKEKSYDEVKKSLRLCETKLECKKKELE 243 (544)
Q Consensus 214 L~~ke~el~~~~~~le~~~keLe~k~keLe 243 (544)
|+..+.++..+...++..++.+...+.++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.35 E-value=1e+02 Score=34.94 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=9.9
Q ss_pred CCCCChhHHHHHhhc
Q 045360 529 APEINAQVRDEALKV 543 (544)
Q Consensus 529 ~p~i~~~vke~A~~l 543 (544)
+..|++.+..-|+.|
T Consensus 546 G~~~t~~~~~~A~~l 560 (563)
T TIGR00634 546 GLEKSDLTLAHAQEL 560 (563)
T ss_pred CCCccHHHHHHHHHH
Confidence 556777777777654
No 148
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.73 E-value=0.51 Score=54.91 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHh
Q 045360 460 LLLNQH 465 (544)
Q Consensus 460 ~f~~~~ 465 (544)
.|+...
T Consensus 688 sfL~rq 693 (713)
T PF05622_consen 688 SFLARQ 693 (713)
T ss_dssp ------
T ss_pred cHHHHh
Confidence 444433
No 149
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.57 E-value=1.2e+02 Score=35.20 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 045360 82 ESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELL 161 (544)
Q Consensus 82 ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~ 161 (544)
..+++++..+|..+..-+++++.++-. .+++...-+-...+.....+..+-.. +. .
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~--~e~~ka~lee~~~n~~~e~~~~k~~~-----s~-----------------~ 400 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLA--DEIAKAMLEEEQLNSVTEDLKRKSNE-----SE-----------------V 400 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHhhc-----cc-----------------c
Confidence 446677777777888888888777744 55554444433333333333221100 00 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045360 162 KNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSK 199 (544)
Q Consensus 162 ~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~ 199 (544)
+-.-+.+.+.+..+++.+....++.+.+..++..+...
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11235556666666666666666666666655544443
No 150
>PRK11281 hypothetical protein; Provisional
Probab=80.33 E-value=1.6e+02 Score=36.48 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 045360 102 KQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKC-CDEIELKEKKLG 180 (544)
Q Consensus 102 le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~-~~eie~ke~eLe 180 (544)
++..+......+......+...+..+...++..+.-...+.....+++++.....- ....-+-+ ......+..++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~---~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG---GKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCcCCHHHHHHHHHHHH
Confidence 44444455555566666666666666666666666666666666666666544100 00000000 112333344455
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 045360 181 EVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRL 230 (544)
Q Consensus 181 e~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~ 230 (544)
.++-++.....++............+++-...++...+.++...++.++.
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444444444444444444444444444444444
No 151
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=80.32 E-value=67 Score=32.15 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 99 LACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 99 l~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
+..++..+......+......+...+..+..+..+.+.....+.....+++++...
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666777777777777777777777777766666666654
No 152
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.01 E-value=66 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 045360 125 SELNLLSVSLDLKREELSLVQESVNNCQ 152 (544)
Q Consensus 125 ~El~~l~~~le~~~~el~~~~~~~ee~~ 152 (544)
.+...+..+.+.+..........+.+++
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~E 50 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYE 50 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333344444444444333344444443
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.59 E-value=1.1e+02 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=12.5
Q ss_pred hhHHHhhhHHHHHHHHHHhHHHHHHH
Q 045360 115 ECDCELQLKESELNLLSVSLDLKREE 140 (544)
Q Consensus 115 e~~kEi~~~~~El~~l~~~le~~~~e 140 (544)
.|-+++...|..+..+..-++...++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~e 227 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKE 227 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444443
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.15 E-value=1.6e+02 Score=35.69 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045360 284 SDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNELNLI 360 (544)
Q Consensus 284 ~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~~~ 360 (544)
..++..++..+...+++|++....+.....+.....--...+....+.-..++..++.++-.--+.++-|.++|+.+
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444444444444444443333333334444444444444555555444455555555555544
No 155
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=79.10 E-value=77 Score=32.16 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=8.7
Q ss_pred HhhhhhhhHhhchhhh
Q 045360 31 EQANSVLKFTVQWKDL 46 (544)
Q Consensus 31 ~~a~~i~~~~~~~~~~ 46 (544)
.+..+|..+|.-|.-.
T Consensus 4 ~~l~~~n~~t~~~~~~ 19 (264)
T PF06008_consen 4 SQLQSVNALTGAWPAP 19 (264)
T ss_pred HHHhcCcchhhhhhhH
Confidence 3355566566666443
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.96 E-value=30 Score=36.42 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
+..+..+...+.+++..++...+.+..++..++.+...+..+....-...+....++.......+.+...+....+.+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333433444444444444444444433333333344444444444444333333333333333333
No 157
>PF13166 AAA_13: AAA domain
Probab=78.55 E-value=1.4e+02 Score=34.67 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=11.7
Q ss_pred hhhCCChhhHHHHhh
Q 045360 480 IKRARDPASLVLDAM 494 (544)
Q Consensus 480 L~~a~DPaklVLdai 494 (544)
.-..|++.|-||++.
T Consensus 633 ~~~~~N~~RriLE~y 647 (712)
T PF13166_consen 633 AYNIPNVMRRILEAY 647 (712)
T ss_pred HHhhHHHhHHHHHHH
Confidence 445677789999999
No 158
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=77.74 E-value=1.5e+02 Score=34.82 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHH
Q 045360 69 MLLDQRAKEIESK-----ESDLVLVEERIKECNFE 98 (544)
Q Consensus 69 ~~~e~lekEIes~-----ekeie~L~~~iee~~~e 98 (544)
+-++.|-.|+.++ +.++.+|=..++.|+.-
T Consensus 337 rt~KYLLgELkaLVaeq~DsE~qRLitEvE~cisl 371 (861)
T PF15254_consen 337 RTLKYLLGELKALVAEQEDSEVQRLITEVEACISL 371 (861)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 6677777888775 33444444444444443
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.54 E-value=1.5e+02 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 212 EELKAKEKSYDEVKKSLRLCETKLECKKKELE 243 (544)
Q Consensus 212 ~EL~~ke~el~~~~~~le~~~keLe~k~keLe 243 (544)
.||...+.++..++..++..+..+.+-..++.
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555544444443
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.32 E-value=93 Score=32.11 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=57.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhH
Q 045360 77 EIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQK 156 (544)
Q Consensus 77 EIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~ 156 (544)
.|..++.++++|+....-...+++++++-|+.-+...++-..++..+..+.-.|....+.+.+- .+..--+++.+..
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~---rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT---RQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH---HHHhhHHHhhhHH
Confidence 4555667777777777777777888877777665666666666666666665555444443332 1222223333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 157 KMELLKNLLEKCCDEIELKEKKLGEVQRLVEE 188 (544)
Q Consensus 157 ~l~~~~~~lE~~~~eie~ke~eLee~~keie~ 188 (544)
.+-.+.-.+..+...|+.++.++.-.+.+++.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333444444444444444444444433
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=58 Score=37.13 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 218 EKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 218 e~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
+.++.....++..++++|..+.+.++.+.+.+.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554444433
No 162
>PRK12704 phosphodiesterase; Provisional
Probab=75.80 E-value=1.5e+02 Score=33.59 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=29.0
Q ss_pred ccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCC-Ch-----hhHHHHhh
Q 045360 452 TSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRAR-DP-----ASLVLDAM 494 (544)
Q Consensus 452 ~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~-DP-----aklVLdai 494 (544)
-=+|++.+.| +..-.++-+=+.-|.++-.++ || |+..|..+
T Consensus 227 greGrnir~~--e~~tgvd~iiddtp~~v~ls~~~~~rre~a~~~l~~l 273 (520)
T PRK12704 227 GREGRNIRAL--ETLTGVDLIIDDTPEAVILSGFDPIRREIARLALEKL 273 (520)
T ss_pred CCCcchHHHH--HHHhCCeEEEcCCCCeEEEecCChhhHHHHHHHHHHH
Confidence 3577888887 555677778888888877665 88 44666555
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.66 E-value=1.6e+02 Score=34.01 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.4
Q ss_pred ChhhHHHHhhcCcC
Q 045360 485 DPASLVLDAMSGFY 498 (544)
Q Consensus 485 DPaklVLdai~~f~ 498 (544)
.|.-+|+|+--|++
T Consensus 574 ~~~p~iiD~p~~~l 587 (650)
T TIGR03185 574 RRLPVIIDTPLGRL 587 (650)
T ss_pred CCCCEEEcCCcccc
Confidence 34445555443333
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.37 E-value=1.2e+02 Score=32.22 Aligned_cols=199 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh---hh-hHHHHHHHHHHHHHHHHHHH
Q 045360 99 LACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQ---VD-QKKMELLKNLLEKCCDEIEL 174 (544)
Q Consensus 99 l~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~---~k-~~~l~~~~~~lE~~~~eie~ 174 (544)
+.++.+-+..+.++++.|..+-.......+.|+.+...+........-...... -. .....++.+.+..+......
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 445555566777888888888888888888888776666654433221100000 00 00112333334444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 175 KEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLS 254 (544)
Q Consensus 175 ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~ 254 (544)
+..++..+...+.+....+ ...+..+..++-...+..-.. ...+...-|.+++.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~---------------------KlLR~~la~~r~~~~~~~~~~-----~~~ere~lV~qLEk 137 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDI---------------------KLLREKLARQRVGDEGIGARH-----FPHEREDLVEQLEK 137 (319)
T ss_pred HHHHHHHHHHHHHHHhchH---------------------HHHHHHHHhhhhhhccccccc-----cchHHHHHHHHHHH
Confidence 3333333333322222222 222222222221111111000 00223333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKE-------VEDLSQELASKDKLLKIFKKSIE 323 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~ke-------lee~ekeL~~k~kq~e~~~ke~e 323 (544)
...++.+|+..++..-.+..++...++.+..-...+-.++.-+-+. |..+-.+-+-+..++..++.|..
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655555555555554333322 44455555555555555555554
No 165
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.80 E-value=92 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Q 045360 99 LACKQKELGLVQKMIGECDCELQLKESELNLLS 131 (544)
Q Consensus 99 l~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~ 131 (544)
+..++.+|...+.++.....+|-.++..+....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR 44 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333
No 166
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.47 E-value=1.4e+02 Score=32.90 Aligned_cols=14 Identities=21% Similarity=0.033 Sum_probs=8.8
Q ss_pred hhHHHHHHHHhhhh
Q 045360 513 LIRRSCILLLEHLL 526 (544)
Q Consensus 513 ~~r~~cilLLE~L~ 526 (544)
..|+.|++++=+|.
T Consensus 471 ~~~~~~~~~~~~~~ 484 (498)
T TIGR03007 471 RRRRRLAAFLASAG 484 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777765553
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.03 E-value=74 Score=29.39 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 045360 168 CCDEIELKEKKLGEVQ 183 (544)
Q Consensus 168 ~~~eie~ke~eLee~~ 183 (544)
|..++..++.+++.++
T Consensus 131 ~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 131 YEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 168
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.71 E-value=1.3e+02 Score=31.92 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045360 187 EEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECK 238 (544)
Q Consensus 187 e~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k 238 (544)
+.+-.+|+........+...+..+..+.+....+-+.++.++..++.+|.+.
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666677777777777777777788888877777554
No 169
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.22 E-value=33 Score=34.26 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLC 231 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~ 231 (544)
+++...+-+.+-+++.++.-++++..+.|..++.....++..++-+-.++...+..+......++..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 3333333333334444444444444444444444444444444444444444444444444444443
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.93 E-value=1.7e+02 Score=33.12 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHH
Q 045360 327 REFQVKKEELSSIKSEIVECSDEVELKRNELN 358 (544)
Q Consensus 327 ~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~ 358 (544)
.+.++-.++|.|.++.+-..+-.|..-.++++
T Consensus 318 seiqkLkqqL~smErek~~l~anL~dtqt~le 349 (772)
T KOG0999|consen 318 SEIQKLKQQLMSMEREKAELLANLQDTQTQLE 349 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc
Confidence 33444444555555555555555544444443
No 171
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.48 E-value=95 Score=29.52 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045360 256 RRRVRRRENEVESIERELDSMK 277 (544)
Q Consensus 256 e~~ikele~k~~~~ee~L~el~ 277 (544)
..++..+.............+.
T Consensus 111 r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 111 REELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.94 E-value=1.9e+02 Score=31.96 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=8.6
Q ss_pred HHhHHHHHHHHHHHHHhHHHH
Q 045360 204 QSMIEEYEEELKAKEKSYDEV 224 (544)
Q Consensus 204 ~~~l~e~~~EL~~ke~el~~~ 224 (544)
+.++.++.+++....-.++.+
T Consensus 434 d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 434 DEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHhHheehhhh
Confidence 333444444444444444333
No 173
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=68.59 E-value=2e+02 Score=32.05 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Q 045360 348 DEVELKRNELNLIQHASNKLQFD 370 (544)
Q Consensus 348 ~ele~k~~~~~~~~~~~~k~~~d 370 (544)
-|.+..++++...-..++-+.+|
T Consensus 533 ~E~eklE~el~~lnL~s~ts~l~ 555 (622)
T COG5185 533 IEIEKLEKELNDLNLLSKTSILD 555 (622)
T ss_pred HHHHHHHHHHHHhhhhccchHhh
Confidence 34455555555444455544444
No 174
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.34 E-value=2e+02 Score=31.95 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045360 381 RELKEKEKLFDSLKKGLEDRFQDLEVKERLFEKRV 415 (544)
Q Consensus 381 ~~~~~k~~~f~sle~~l~~r~~eLe~kek~~e~~~ 415 (544)
++-+..+..|-||+.+|.++-++=-.....|..++
T Consensus 485 rEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~l 519 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQKHEKENLEERQKLKSRL 519 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55566667777777777776665444444444443
No 175
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.18 E-value=1.8e+02 Score=30.98 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045360 169 CDEIELKEKKLGEVQRLVEEREKQIALKDSK 199 (544)
Q Consensus 169 ~~eie~ke~eLee~~keie~~~eeLe~~e~~ 199 (544)
.++-..++-+|+++..++.+.+++-..+.-+
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 3444444455555555555544444333333
No 176
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.14 E-value=1.7e+02 Score=30.27 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 206 MIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKEL 252 (544)
Q Consensus 206 ~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel 252 (544)
.+.....++......+.+....-.+++.+++.+..+++..++++..+
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666555555444
No 177
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=65.03 E-value=99 Score=27.27 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 045360 82 ESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNC 151 (544)
Q Consensus 82 ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~ 151 (544)
-.++.+|+.+..-+.+-+-.-+..-..+...+..++..|.....|+.+|.=+-.++.+.+..++..++..
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655555555666777888888888888888888888888877777777777533
No 178
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.95 E-value=2.4e+02 Score=31.70 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045360 206 MIEEYEEELKAKEKSYDEVKKSLRLCETKL 235 (544)
Q Consensus 206 ~l~e~~~EL~~ke~el~~~~~~le~~~keL 235 (544)
-+..+..++...|.+....++.+.+..+++
T Consensus 199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el 228 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSGQEELQSKTKEL 228 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444
No 179
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=64.59 E-value=1.3e+02 Score=28.56 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH--------HHHHHHHHhHHHHHHHHHH
Q 045360 72 DQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKE--------SELNLLSVSLDLKREELSL 143 (544)
Q Consensus 72 e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~--------~El~~l~~~le~~~~el~~ 143 (544)
+....+.+.+.+++..++..+.....+++.+....+..+..+.+.++.+.... .+...++.++.-++.....
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 045360 144 VQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSM 206 (544)
Q Consensus 144 ~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~ 206 (544)
...+.+++++. +..+..-++..+.-...+.--+.-+...|......++.+...
T Consensus 103 Lr~rRD~LErr----------l~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 103 LRERRDELERR----------LRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
No 180
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=63.93 E-value=2.9e+02 Score=32.26 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 045360 297 LKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVECSDEVELKRNELNLIQHAS 364 (544)
Q Consensus 297 ~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~~~~ele~k~~~~~~~~~~~ 364 (544)
+|.+++++...|..-.+..+...-.|.+..+=| .+.+++....+-++.--|+-.++.|..+..+|
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPL---lRQIE~lQ~tl~~~~tawereE~~l~~rL~dS 674 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEELIQQVPETTRPL---LRQIEALQETLSKAATAWEREERSLNERLSDS 674 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Confidence 356666777777777777777666666555544 34556667777777777777777777665544
No 181
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.86 E-value=82 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 045360 70 LLDQRAKEIESKESDLVLVEERIKECNFELACKQ 103 (544)
Q Consensus 70 ~~e~lekEIes~ekeie~L~~~iee~~~el~~le 103 (544)
.++.|+.-|.++-..|..|+..++++..+-.++.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555555555555555555555544444
No 182
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.47 E-value=98 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=15.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045360 76 KEIESKESDLVLVEERIKECNFELACKQKEL 106 (544)
Q Consensus 76 kEIes~ekeie~L~~~iee~~~el~~le~ql 106 (544)
.||.+.++.+..+.........++..++..+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~ 33 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKK 33 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444433
No 183
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.05 E-value=2.1e+02 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKI 200 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l 200 (544)
|+.-..+++-..++|..++.-.=....+++.++.+|
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 444444444444444444433334444444444443
No 184
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.95 E-value=4.1e+02 Score=33.02 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 045360 177 KKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRL 230 (544)
Q Consensus 177 ~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~ 230 (544)
.+...++.++..++.++.......+....+.+-...++...+.++...++.++.
T Consensus 180 ae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 180 AESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333333344444444444444444433
No 185
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=60.80 E-value=1.7e+02 Score=28.57 Aligned_cols=18 Identities=39% Similarity=0.316 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEV 182 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~ 182 (544)
...+..+...++.++...
T Consensus 105 ~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 105 QEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 186
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.01 E-value=3.4e+02 Score=31.81 Aligned_cols=6 Identities=50% Similarity=0.379 Sum_probs=2.5
Q ss_pred hhHHHH
Q 045360 457 NLQLLL 462 (544)
Q Consensus 457 gL~~f~ 462 (544)
||..++
T Consensus 601 gl~~~l 606 (754)
T TIGR01005 601 GLLDLL 606 (754)
T ss_pred ChHHHH
Confidence 444444
No 187
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.84 E-value=1.8e+02 Score=28.45 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=7.2
Q ss_pred HhhchhhhHHhhhhh
Q 045360 39 FTVQWKDLEKHFDLG 53 (544)
Q Consensus 39 ~~~~~~~~e~~~~s~ 53 (544)
++-.|..|+....++
T Consensus 64 idd~~~~f~~~~~tl 78 (190)
T PF05266_consen 64 IDDSRSSFESLMKTL 78 (190)
T ss_pred cCCcHHHHHHHHHHH
Confidence 444455555544443
No 188
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.81 E-value=3.7e+02 Score=31.52 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhh
Q 045360 128 NLLSVSLDLKREELSLVQESVNNC 151 (544)
Q Consensus 128 ~~l~~~le~~~~el~~~~~~~ee~ 151 (544)
.++..++..++..+...+..++.+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 189
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.35 E-value=33 Score=36.95 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=0.4
Q ss_pred HHHHHHHH
Q 045360 124 ESELNLLS 131 (544)
Q Consensus 124 ~~El~~l~ 131 (544)
+.++..++
T Consensus 111 kkEie~IK 118 (370)
T PF02994_consen 111 KKEIENIK 118 (370)
T ss_dssp -------H
T ss_pred HHHHHHHh
Confidence 33333333
No 190
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=55.24 E-value=2.6e+02 Score=28.98 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=21.6
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045360 274 DSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSI 322 (544)
Q Consensus 274 ~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~ 322 (544)
..+++.+..+..++..++.++.-..+.+....+.|+.+.-.+.-+..+|
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444444433333333333333333333
No 191
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.65 E-value=3.4e+02 Score=29.88 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCcchhhhhhhhhhhHHhHHHHHHHHHHHHHhhhhhhh----Hhh-------chhhhHHhhhhhHHHHHHhhHHHHHH
Q 045360 1 MENCTVNISEELRAAESKKQALRRSFDIAHEQANSVLK----FTV-------QWKDLEKHFDLGKKSLEKQSNDVDMK 67 (544)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~a~~i~~----~~~-------~~~~~e~~~~s~~~~ie~~~~el~~k 67 (544)
|+.|-+-|.-.+...+-|-+.+..+-+..-++.|..-+ |+- ++++.|.+-......=+.+|.|+.-+
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k 290 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIK 290 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56777888888887777777777665555555555433 443 44444443333333334555555433
No 192
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.84 E-value=42 Score=36.09 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.3
Q ss_pred ccccCCcccch
Q 045360 445 IEEQENLTSKG 455 (544)
Q Consensus 445 ~~~~~~l~md~ 455 (544)
||.-..++++|
T Consensus 317 YPakL~i~~~G 327 (370)
T PF02994_consen 317 YPAKLRITYNG 327 (370)
T ss_dssp TTTEEEEESSS
T ss_pred CcchhcceeCC
Confidence 33333334444
No 193
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.80 E-value=1.3e+02 Score=30.24 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 268 SIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASK 311 (544)
Q Consensus 268 ~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k 311 (544)
.+.+.+.++.+..+.+.+++..++.+|++.+..+.+++.+...+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555666666666666666655555555554444433
No 194
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.75 E-value=1.7e+02 Score=26.22 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045360 92 IKECNFELACKQKELGLV 109 (544)
Q Consensus 92 iee~~~el~~le~ql~~~ 109 (544)
+.+...++..++.++..+
T Consensus 9 ~q~~~~~~q~lq~~l~~~ 26 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERL 26 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 195
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.11 E-value=3.1e+02 Score=28.86 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045360 182 VQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCE 232 (544)
Q Consensus 182 ~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~ 232 (544)
+.=+++.+...|+++++.+.++...+.+...+|+.....+...+..+..++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443343333334433333333333333333
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.41 E-value=5.1e+02 Score=30.89 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=79.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh-hHH
Q 045360 79 ESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD-QKK 157 (544)
Q Consensus 79 es~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k-~~~ 157 (544)
+..+.++.-|+.+++.....-.+++..+.-++-.+.+|.+.+...+.+-...-. .-+.......+.++.. +.+
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~------~~~~~~s~e~e~~~~~le~~ 93 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIH------EAVAKKSKEWEKIKSELEAK 93 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHhHHHHHHHHHHHHH
Confidence 345788888888888888777888888888889999999988776666544321 1111111222222111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045360 158 MELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKL 235 (544)
Q Consensus 158 l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keL 235 (544)
|......+.....+-..+-.-|.+..+.|..+.+.-...+..+..+..+++....+...++-+++-+.+.++-...+.
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444444444444444444444444433333
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.20 E-value=3.9e+02 Score=29.49 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 045360 300 EVEDLSQELASKDKLLKIFKKSIE 323 (544)
Q Consensus 300 elee~ekeL~~k~kq~e~~~ke~e 323 (544)
++..+..++...+..|.....-++
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444
No 198
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.75 E-value=5e+02 Score=30.64 Aligned_cols=55 Identities=5% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045360 266 VESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKK 320 (544)
Q Consensus 266 ~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~k 320 (544)
+..+..+|..++.....+...+...+.++....+.+..+...+..+-.++....+
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666777777777777777777777777777777777777776666655
No 199
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.59 E-value=1.6e+02 Score=24.79 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 70 LLDQRAKEIESKESDLVLVEERIKECNFELACKQKELG 107 (544)
Q Consensus 70 ~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~ 107 (544)
.++.|+..|..+--.|.-|+..|+++..+=..+.....
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556666666666555444444433
No 200
>PRK00106 hypothetical protein; Provisional
Probab=48.80 E-value=4.6e+02 Score=29.88 Aligned_cols=129 Identities=11% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045360 256 RRRVRRRENEVESIEREL-DSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKE 334 (544)
Q Consensus 256 e~~ikele~k~~~~ee~L-~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~ 334 (544)
.....+.+........+. .++...+..+..++.....++..+...+..++..|......++.....|..+++.+..+..
T Consensus 60 keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~ree 139 (535)
T PRK00106 60 KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSK 139 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhhHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 045360 335 ELSSIKSEIVECSDEVELKRNELNLIQHASNKLQFDLIQTMEIGYLRELKEKEKLFDSLKKGLEDRFQDL 404 (544)
Q Consensus 335 el~s~~~~~~~~~~ele~k~~~~~~~~~~~~k~~~d~~~~~~~~~~~~~~~k~~~f~sle~~l~~r~~eL 404 (544)
+|......+.....+...+=..+- .+-.-+.|..-|..++..+......+
T Consensus 140 eLee~~~~~~~~~~~~~~~Le~~a--------------------~lt~~eak~~l~~~~~~~~~~~~~~~ 189 (535)
T PRK00106 140 HIDEREEQVEKLEEQKKAELERVA--------------------ALSQAEAREIILAETENKLTHEIATR 189 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
No 201
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.71 E-value=1.6e+02 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.6
Q ss_pred chhhhhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 045360 4 CTVNISEELRAAESKKQALRRSFDIAHEQAN 34 (544)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~a~ 34 (544)
....|...|.+ .+.|-...++|+.+.+.-.
T Consensus 18 s~~di~~nL~~-~~~K~~v~k~Ld~L~~~g~ 47 (169)
T PF07106_consen 18 SAQDIFDNLHN-KVGKTAVQKALDSLVEEGK 47 (169)
T ss_pred cHHHHHHHHHh-hccHHHHHHHHHHHHhCCC
Confidence 34567788877 7888999999999988744
No 202
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.93 E-value=4.3e+02 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhHHHHHHhhHHHH
Q 045360 329 FQVKKEELSSIKSEIVECSDEVE 351 (544)
Q Consensus 329 ~~~~~~el~s~~~~~~~~~~ele 351 (544)
|+.+++.|.+.++..+....+..
T Consensus 335 ~e~~~kqL~~~~kek~~~~Qd~~ 357 (446)
T KOG4438|consen 335 FENLTKQLNELKKEKESRRQDLE 357 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444443
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.56 E-value=1.6e+02 Score=23.99 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 166 EKCCDEIELKEKKLGEVQRLVEEREKQI 193 (544)
Q Consensus 166 E~~~~eie~ke~eLee~~keie~~~eeL 193 (544)
.+....+..+-.++..++.+++.+.+++
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443
No 204
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.32 E-value=1.7e+02 Score=24.12 Aligned_cols=17 Identities=24% Similarity=0.009 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045360 67 KIMLLDQRAKEIESKES 83 (544)
Q Consensus 67 k~~~~e~lekEIes~ek 83 (544)
|..+|..|..+-+.+..
T Consensus 10 KDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 205
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=43.85 E-value=3.7e+02 Score=27.40 Aligned_cols=121 Identities=14% Similarity=0.238 Sum_probs=72.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKK 279 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~ 279 (544)
|..++.-+.....+|...+.-|+++...|++..+.|..-.-.+..+..++... ....+.+-..+.-+..+.++|+.-
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~v---k~~qkrLdq~L~~I~sqQ~ELE~~ 149 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKV---KLDQKRLDQELEFILSQQQELEDL 149 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778888999999999999999999999999877777777776665433 233333444444444444444444
Q ss_pred HhhHhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045360 280 QKKYSDDIGMKER---------EYNGLKKEVEDLSQELASKDKLLKIFKKSIE 323 (544)
Q Consensus 280 ~e~~~kel~~kek---------e~e~~~kelee~ekeL~~k~kq~e~~~ke~e 323 (544)
+..++..+..-.. +.....+....+-..|..+-..+..+.+.+-
T Consensus 150 L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN 202 (254)
T KOG2196|consen 150 LDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLN 202 (254)
T ss_pred HHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444444222 2222223333444444444555555544443
No 206
>PRK11281 hypothetical protein; Provisional
Probab=43.03 E-value=7.6e+02 Score=30.80 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 045360 396 GLEDRFQDLEVKERLFEKRVKD 417 (544)
Q Consensus 396 ~l~~r~~eLe~kek~~e~~~~e 417 (544)
-++.|-+=|..=.+.++.+...
T Consensus 408 ll~~r~~LL~~l~~~~~~~l~~ 429 (1113)
T PRK11281 408 LLDERRELLDQLNKQLNNQLNL 429 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555544
No 207
>PF13166 AAA_13: AAA domain
Probab=42.59 E-value=5.9e+02 Score=29.42 Aligned_cols=9 Identities=22% Similarity=0.132 Sum_probs=3.6
Q ss_pred CChhHHHHH
Q 045360 532 INAQVRDEA 540 (544)
Q Consensus 532 i~~~vke~A 540 (544)
++|...++.
T Consensus 695 ~~~~~~~e~ 703 (712)
T PF13166_consen 695 MNPIDIEEY 703 (712)
T ss_pred CChhhHHHH
Confidence 344444433
No 208
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.54 E-value=4.1e+02 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=17.4
Q ss_pred HHhhHHHhhhHHHHHHHHHHhHHHHHH
Q 045360 113 IGECDCELQLKESELNLLSVSLDLKRE 139 (544)
Q Consensus 113 I~e~~kEi~~~~~El~~l~~~le~~~~ 139 (544)
+...-.++....-.+.||+.+++.+..
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~E 180 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEILE 180 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 333445666677788888887776543
No 209
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.50 E-value=1.3e+02 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045360 74 RAKEIESKESDLVLVEERIKECNFELACK 102 (544)
Q Consensus 74 lekEIes~ekeie~L~~~iee~~~el~~l 102 (544)
++.++.++...++-++..++++...++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 210
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.79 E-value=2.3e+02 Score=24.35 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=31.3
Q ss_pred hhhhhhhhhHHhHHHHHHHHHHHHHhhhhhhh-HhhchhhhHHhhhhhHHHHHHhhHHH
Q 045360 7 NISEELRAAESKKQALRRSFDIAHEQANSVLK-FTVQWKDLEKHFDLGKKSLEKQSNDV 64 (544)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~i~~~a~~i~~-~~~~~~~~e~~~~s~~~~ie~~~~el 64 (544)
.|.+-|..+..+...+...++.|.+....|-. ..--+.+|..+|+.+...|+.+-..+
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666665444432 33444555555555555555444443
No 211
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.62 E-value=4.2e+02 Score=27.45 Aligned_cols=113 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 045360 87 LVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLE 166 (544)
Q Consensus 87 ~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE 166 (544)
.|+.-|.+...++.....+|..+.-+.+.+...|..++.|+...+++++.++...=.-=-.++.++.. +.
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Eee----------Lq 178 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEE----------LQ 178 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH----------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHhHHH
Q 045360 167 KCCDEIELKEKKLGEVQRLVEEREKQ----IALKDSKISSIQSMIEE 209 (544)
Q Consensus 167 ~~~~eie~ke~eLee~~keie~~~ee----Le~~e~~l~~l~~~l~e 209 (544)
...+.--..+.-+.-+.++++.+..- .+..++.+-.+-+.+.+
T Consensus 179 kly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ekl~e 225 (338)
T KOG3647|consen 179 KLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPEKLIE 225 (338)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHHHhhh
No 212
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.61 E-value=4.1e+02 Score=27.34 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHhhhhhhhHhhchhhhHHhhhhhH
Q 045360 30 HEQANSVLKFTVQWKDLEKHFDLGK 54 (544)
Q Consensus 30 ~~~a~~i~~~~~~~~~~e~~~~s~~ 54 (544)
+..|.+=|++--+|+--|......+
T Consensus 75 ~~~a~~elq~~ks~~Q~e~~v~a~e 99 (330)
T KOG2991|consen 75 KVMARDELQLRKSWKQYEAYVQALE 99 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666677777888877766655
No 213
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.20 E-value=3.1e+02 Score=25.84 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 110 QKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 110 ~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
.++++-..+.|...+.+|..+-..-....++.....+.+++....
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888777777777776666666665544
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=40.73 E-value=4e+02 Score=26.95 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045360 303 DLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKSEIVE 345 (544)
Q Consensus 303 e~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~~~~~ 345 (544)
.+..++......+..+..+...+..+-..+..+|...+.....
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 215
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.82 E-value=2.8e+02 Score=24.49 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=4.3
Q ss_pred HHHHHhHHHHHH
Q 045360 215 KAKEKSYDEVKK 226 (544)
Q Consensus 215 ~~ke~el~~~~~ 226 (544)
..++..+.....
T Consensus 17 ~~kr~e~~~~~~ 28 (126)
T PF13863_consen 17 DTKREEIERREE 28 (126)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 216
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.81 E-value=3.1e+02 Score=25.09 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=21.2
Q ss_pred HHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 112 MIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 112 eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
.+.++..-.+...+++..++.+++++...+..+...+..++.+
T Consensus 76 klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555555555555555555555555444433
No 217
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.40 E-value=6e+02 Score=28.28 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHH
Q 045360 79 ESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKM 158 (544)
Q Consensus 79 es~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l 158 (544)
.+...+++.+....++. ..+.+..++..-.-..++.....+...+.++..+..-.+.....+..-..-+..+...
T Consensus 227 sse~ee~eel~eq~een-eel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~---- 301 (521)
T KOG1937|consen 227 SSEEEEVEELTEQNEEN-EELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGK---- 301 (521)
T ss_pred cccchhHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045360 159 ELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECK 238 (544)
Q Consensus 159 ~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k 238 (544)
+......+..+-.+++.-..=+......|-......+--...| ..+...+..+...-..+++....-...
T Consensus 302 ------l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~----~~IqeleqdL~a~~eei~~~eel~~~L 371 (521)
T KOG1937|consen 302 ------LAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEI----RRIQELEQDLEAVDEEIESNEELAEKL 371 (521)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045360 239 KKELERTQSSIKELLSFRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIF 318 (544)
Q Consensus 239 ~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~ 318 (544)
..+++++-.-+..+ .+..+|+++--.++..+.++.-+....-.+.++.++....+.---..+-++.-.=..+.-++-..
T Consensus 372 rsele~lp~dv~rk-~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~a 450 (521)
T KOG1937|consen 372 RSELEKLPDDVQRK-VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLA 450 (521)
T ss_pred HHHHhcCCchhHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHH
Q ss_pred HHHHH-------------HHHHHHHHHHHHhhhh
Q 045360 319 KKSIE-------------ECSREFQVKKEELSSI 339 (544)
Q Consensus 319 ~ke~e-------------~k~~~~~~~~~el~s~ 339 (544)
.|-|- +-.+-|.-.|++|++.
T Consensus 451 ykllt~iH~nc~ei~E~i~~tg~~~revrdlE~q 484 (521)
T KOG1937|consen 451 YKLLTRIHLNCMEILEMIRETGALKREVRDLESQ 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
No 218
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.25 E-value=1.3e+02 Score=30.10 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 045360 123 KESELNLL 130 (544)
Q Consensus 123 ~~~El~~l 130 (544)
..+|.+.+
T Consensus 191 ~~~EydrL 198 (216)
T KOG1962|consen 191 LQDEYDRL 198 (216)
T ss_pred cccHHHHH
Confidence 33333333
No 219
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.95 E-value=1.5e+02 Score=24.91 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045360 26 FDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDM---KIMLLDQRAKEIESKESDLVLVEERIKEC 95 (544)
Q Consensus 26 ~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~---k~~~~e~lekEIes~ekeie~L~~~iee~ 95 (544)
++.|+....+ =.+.-+|+....++++..|..+-.-+.. ..+-++....+|..++.++...+.-+..+
T Consensus 9 ~~~l~~~~~d---~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 9 FDILHQISKD---PPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333 5667789999999999888877655555 45667777777766666655544444433
No 220
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.84 E-value=5.5e+02 Score=27.72 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhHHHH
Q 045360 324 ECSREFQVKKEELSSIKSEIVECSDEVE 351 (544)
Q Consensus 324 ~k~~~~~~~~~el~s~~~~~~~~~~ele 351 (544)
....+|..-.++++..+..|..-+.-++
T Consensus 339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 339 RQRDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444443
No 221
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.50 E-value=2.3e+02 Score=23.28 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQL 122 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~ 122 (544)
+++++..|...---|..|+..|+++..+-..+....+..+...+.+..+-+.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq 57 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555544444444444333333333333333
No 222
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.22 E-value=5.5e+02 Score=29.06 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045360 25 SFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQK 104 (544)
Q Consensus 25 ~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ 104 (544)
...++|-.=|-...|....+.+-.||+...+.-+.+..+|......+..++.|++.....++ .++.-....+.++.+
T Consensus 425 Lt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEHLasmNe 501 (518)
T PF10212_consen 425 LTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEHLASMNE 501 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHH
Confidence 33444444444455666666666676666666666666666666666666666666544444 455555555555555
Q ss_pred HHHHHHHHHHhh
Q 045360 105 ELGLVQKMIGEC 116 (544)
Q Consensus 105 ql~~~~~eI~e~ 116 (544)
+|..-.++|+.+
T Consensus 502 qL~~Q~eeI~~L 513 (518)
T PF10212_consen 502 QLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
No 223
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.11 E-value=3e+02 Score=24.35 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 045360 74 RAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQ 145 (544)
Q Consensus 74 lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~ 145 (544)
++.+...+..+...|+.-+-+-......+..+|......|.....++..+..--..|.++++.+..++....
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555566666666665555555666777777777777888888888888888888888888888887543
No 224
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=36.37 E-value=3.8e+02 Score=25.34 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=10.3
Q ss_pred HHHHHHHhhHhhHHHHHHHHHH
Q 045360 274 DSMKKKQKKYSDDIGMKEREYN 295 (544)
Q Consensus 274 ~el~~~~e~~~kel~~keke~e 295 (544)
++.......+...|..+-.+.+
T Consensus 122 nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 122 NEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555544444
No 225
>PRK00846 hypothetical protein; Provisional
Probab=36.31 E-value=2.2e+02 Score=23.85 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=23.0
Q ss_pred HHHHHhhHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045360 55 KSLEKQSNDVDMK----IMLLDQRAKEIESKESDLVLVEERIKECNFE 98 (544)
Q Consensus 55 ~~ie~~~~el~~k----~~~~e~lekEIes~ekeie~L~~~iee~~~e 98 (544)
..++.++-+|+.+ +.-|+.|...+-..+..++.|+.++.-+...
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677666 3445555555544444455444444444433
No 226
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=36.16 E-value=2.6e+02 Score=23.52 Aligned_cols=95 Identities=13% Similarity=0.329 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045360 260 RRRENEVESIERELDSMKKKQKKYSDDIGMKE-----REYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQVKKE 334 (544)
Q Consensus 260 kele~k~~~~ee~L~el~~~~e~~~kel~~ke-----ke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~ 334 (544)
.............|..+...+..+...+...- ..+.....-+..+...+......+.....+++.+...+.....
T Consensus 8 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 8 AEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555444444444444444 5566666666777777777777777777777777777777777
Q ss_pred HhhhhHHHHHHhhHHHHHHH
Q 045360 335 ELSSIKSEIVECSDEVELKR 354 (544)
Q Consensus 335 el~s~~~~~~~~~~ele~k~ 354 (544)
+....++-.+..........
T Consensus 88 ~~k~~e~L~e~~~~~~~~~~ 107 (123)
T PF02050_consen 88 ERKKLEKLKERRREEYQQEE 107 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777766666655554443
No 227
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.97 E-value=6.6e+02 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 216 AKEKSYDEVKKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 216 ~ke~el~~~~~~le~~~keLe~k~keLe~~~~eie 250 (544)
..++.+.+.+.-+....+.|...+.+-++++-+++
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445555555555555555555555555555444
No 228
>PRK00736 hypothetical protein; Provisional
Probab=34.57 E-value=1.8e+02 Score=23.59 Aligned_cols=10 Identities=10% Similarity=0.571 Sum_probs=4.8
Q ss_pred HHhhHHHHHH
Q 045360 58 EKQSNDVDMK 67 (544)
Q Consensus 58 e~~~~el~~k 67 (544)
+.++.+||.+
T Consensus 4 e~Ri~~LE~k 13 (68)
T PRK00736 4 EERLTELEIR 13 (68)
T ss_pred HHHHHHHHHH
Confidence 4444455544
No 229
>PRK00295 hypothetical protein; Provisional
Probab=34.52 E-value=2e+02 Score=23.30 Aligned_cols=48 Identities=6% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 045360 56 SLEKQSNDVDMK----IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQ 103 (544)
Q Consensus 56 ~ie~~~~el~~k----~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le 103 (544)
+++.++.+|+.+ +.-|+.|...+-..+++++.|+.++..+...+....
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 230
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.00 E-value=7.7e+02 Score=28.24 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 045360 68 IMLLDQRAKEIESKESDLV 86 (544)
Q Consensus 68 ~~~~e~lekEIes~ekeie 86 (544)
+..++.+..+|+.+..+++
T Consensus 7 eq~ve~lr~eierLT~el~ 25 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELE 25 (772)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3455566666655554444
No 231
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=33.95 E-value=8.1e+02 Score=28.50 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 254 SFRRRVRRRENEVESIERELDSMK 277 (544)
Q Consensus 254 ~~e~~ikele~k~~~~ee~L~el~ 277 (544)
-++.+-++.+.+.+..+..++++.
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHH
Confidence 345555566666666666666664
No 232
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.45 E-value=5.9e+02 Score=26.76 Aligned_cols=108 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHhhHHHhhhHHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 113 IGECDCELQLKESELNLLSVSLDLKREEL-SLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREK 191 (544)
Q Consensus 113 I~e~~kEi~~~~~El~~l~~~le~~~~el-~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~e 191 (544)
+..-.++-...-.++.++.+.+++.-... -...+.-.++... ++.+...-+.+..+|+.+..++.....
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~----------LEkI~SREK~lNnqL~~l~q~fr~a~~ 287 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKA----------LEKIASREKSLNNQLASLMQKFRRATD 287 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 045360 192 QIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRL 230 (544)
Q Consensus 192 eLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~ 230 (544)
.+.++...+...+......++.|+...-++......++.
T Consensus 288 ~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 288 TLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 233
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.41 E-value=5.6e+02 Score=26.50 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 045360 68 IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQES 147 (544)
Q Consensus 68 ~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~ 147 (544)
-..+-..-.+|++..-.++=|+.++++......... .......+.+.+++.+...+.++..+...+.+..+++......
T Consensus 151 l~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 151 LKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777778888888888654433222 2233345666677777777777776666666665555555555
Q ss_pred hhhhhhh
Q 045360 148 VNNCQVD 154 (544)
Q Consensus 148 ~ee~~~k 154 (544)
+.++..+
T Consensus 230 i~e~~~r 236 (269)
T PF05278_consen 230 ITEMKGR 236 (269)
T ss_pred HHHHHHH
Confidence 5444433
No 234
>PRK10869 recombination and repair protein; Provisional
Probab=32.75 E-value=7.8e+02 Score=27.96 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=10.5
Q ss_pred CCCCChhHHHHHhhc
Q 045360 529 APEINAQVRDEALKV 543 (544)
Q Consensus 529 ~p~i~~~vke~A~~l 543 (544)
+-.|++.+..-|+.|
T Consensus 536 G~~~t~~~~~~A~eL 550 (553)
T PRK10869 536 GSEVTRNTLANAKEL 550 (553)
T ss_pred CCCCCHHHHHHHHHH
Confidence 557777777777654
No 235
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.52 E-value=7.2e+02 Score=27.45 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=21.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Q 045360 79 ESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLL 130 (544)
Q Consensus 79 es~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l 130 (544)
..+-..++.|+.-++.++.++..+.-.... ..++.+.++|.....+|..+
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~--~qle~v~kdi~~a~~~L~~m 265 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDVVQRGVRPSP--KQLETVAKDISRASKELKKM 265 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666665554333222 34444444444444443333
No 236
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=32.32 E-value=4.9e+02 Score=25.44 Aligned_cols=65 Identities=15% Similarity=0.315 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 181 EVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERT 245 (544)
Q Consensus 181 e~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~ 245 (544)
.-..++..+..-|......+.....-..+...+|..+..=++..+.+++.+.+.|..-..+++..
T Consensus 106 ~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 106 QAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555666666666667777777777777777777777777777777776666644
No 237
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.31 E-value=4.3e+02 Score=24.83 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045360 90 ERIKECNFELACKQKELGL 108 (544)
Q Consensus 90 ~~iee~~~el~~le~ql~~ 108 (544)
.++.....++..++.+|..
T Consensus 20 ~~~~~~~~e~~~~k~ql~~ 38 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKE 38 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334333333
No 238
>PRK04325 hypothetical protein; Provisional
Probab=31.99 E-value=2.5e+02 Score=23.12 Aligned_cols=11 Identities=9% Similarity=0.555 Sum_probs=5.2
Q ss_pred HHHhhHHHHHH
Q 045360 57 LEKQSNDVDMK 67 (544)
Q Consensus 57 ie~~~~el~~k 67 (544)
++.++.+||.+
T Consensus 7 ~e~Ri~~LE~k 17 (74)
T PRK04325 7 MEDRITELEIQ 17 (74)
T ss_pred HHHHHHHHHHH
Confidence 34444455444
No 239
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.95 E-value=9e+02 Score=28.39 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=50.3
Q ss_pred cchhhhhhhhhhhHHhHHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045360 3 NCTVNISEELRAAESKKQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESK 81 (544)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ 81 (544)
+|-.+..-.+.++.-+...+-.....|+.--+++..++-+-..++....+....+.+--+++.+.-.++....+.+-..
T Consensus 134 ~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~ 212 (716)
T KOG4593|consen 134 QCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQEL 212 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666777777666677777777777777666666666555555555544443
No 240
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.82 E-value=2.6e+02 Score=23.88 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 290 KEREYNGLKKEVEDLSQELASKDK 313 (544)
Q Consensus 290 keke~e~~~kelee~ekeL~~k~k 313 (544)
.+++..+..+.+...+++|..+++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 334444445555555555555555
No 241
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=31.15 E-value=4.7e+02 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=19.2
Q ss_pred HhhHHHHHH--HHHHHHHHHHHHHHhhhHHH
Q 045360 59 KQSNDVDMK--IMLLDQRAKEIESKESDLVL 87 (544)
Q Consensus 59 ~~~~el~~k--~~~~e~lekEIes~ekeie~ 87 (544)
.++.+|+.+ ...+..|+.+|.+++++++.
T Consensus 100 ~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 100 NQYKNLELKSIKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555444 67788888888777776663
No 242
>PRK02119 hypothetical protein; Provisional
Probab=30.95 E-value=3e+02 Score=22.58 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=10.9
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHH
Q 045360 192 QIALKDSKISSIQSMIEEYEEELKAK 217 (544)
Q Consensus 192 eLe~~e~~l~~l~~~l~e~~~EL~~k 217 (544)
.+..++..+...+.-++.++..+...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Q 35 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQ 35 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 243
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.94 E-value=9.3e+02 Score=28.25 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=20.3
Q ss_pred HHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 111 KMIGECDCELQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 111 ~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
+.......++..+...+..+...++.....+...+...
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~ 212 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEER 212 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44445555555666666666665555555554433333
No 244
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.77 E-value=2.8e+02 Score=22.34 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 045360 256 RRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREY 294 (544)
Q Consensus 256 e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~ 294 (544)
+.+|.+++.++...+.-+.+|..-+-.....+..+..++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444444444444443
No 245
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.77 E-value=4.4e+02 Score=24.12 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHH
Q 045360 66 MKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREE 140 (544)
Q Consensus 66 ~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~e 140 (544)
+.-++++.+...|.+..+ .|..+|+.+-..++...+-...+++++.+....+......+..+......+...
T Consensus 47 ~v~kql~~vs~~l~~tKk---hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKK---HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554332 233555555555555555445555555555555555555555555544444433
No 246
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.39 E-value=2.8e+02 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045360 67 KIMLLDQRAKEIESKESDLVLVEERIKECNFELACK 102 (544)
Q Consensus 67 k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~l 102 (544)
+...++.|+..+..+..+...|...+..+..++..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444443333
No 247
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.38 E-value=5.4e+02 Score=25.06 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=24.2
Q ss_pred hhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045360 37 LKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIES 80 (544)
Q Consensus 37 ~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes 80 (544)
..|.-..+|.++.+......+-..+-.-...++.+......+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777755555443333334444444444433
No 248
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.05 E-value=6.8e+02 Score=26.11 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 277 KKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDK 313 (544)
Q Consensus 277 ~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~k 313 (544)
+..+-+.+-.|+.+.+++.-++..|+++...|..+.+
T Consensus 109 ECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 109 ECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 3444444445555555555555555555555555544
No 249
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.55 E-value=2.1e+02 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHHhhhhhhh-------HhhchhhhHHhhhhhHH
Q 045360 17 SKKQALRRSFDIAHEQANSVLK-------FTVQWKDLEKHFDLGKK 55 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a~~i~~-------~~~~~~~~e~~~~s~~~ 55 (544)
+-..+|...++.|.... .|.. +|.+|-|++.|+...+.
T Consensus 102 VP~~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~ 146 (262)
T PF14257_consen 102 VPADKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEA 146 (262)
T ss_pred ECHHHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHH
Confidence 34567888888888554 4444 78888888887776653
No 250
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.45 E-value=1.8e+02 Score=21.65 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=18.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 81 KESDLVLVEERIKECNFELACKQKELGLVQKMI 113 (544)
Q Consensus 81 ~ekeie~L~~~iee~~~el~~le~ql~~~~~eI 113 (544)
++.+++.|+..++.+..+..++..+...+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655554443333
No 251
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.31 E-value=7.5e+02 Score=26.01 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 184 RLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERT 245 (544)
Q Consensus 184 keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~ 245 (544)
.+...+..++..+...+..++..+-....++..+...+..+......+..++...+-+|...
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666665555555555555555555555544444433
No 252
>PRK04406 hypothetical protein; Provisional
Probab=27.23 E-value=3.6e+02 Score=22.29 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHH
Q 045360 193 IALKDSKISSIQSMIEEYEEEL 214 (544)
Q Consensus 193 Le~~e~~l~~l~~~l~e~~~EL 214 (544)
|..++..+...+.-++.++..+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v 34 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDAL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 253
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=26.91 E-value=9.8e+02 Score=27.25 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=32.1
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 196 KDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSS 248 (544)
Q Consensus 196 ~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~e 248 (544)
++++|.++...++.....+......+-..+..++...+.|..........+..
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~ 404 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEH 404 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45556666666666666666666666666666666666665555554444443
No 254
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.88 E-value=6.4e+02 Score=25.08 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 113 IGECDCELQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 113 I~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
+.++...|......+..+...+......+.......
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p 115 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRP 115 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 344445555555555555554444444444444333
No 255
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.68 E-value=3.6e+02 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 045360 211 EEELKAKEKSYDEVKKSLRL 230 (544)
Q Consensus 211 ~~EL~~ke~el~~~~~~le~ 230 (544)
..+......+...++.++.+
T Consensus 45 ~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 45 KEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443
No 256
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.57 E-value=7.5e+02 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHh
Q 045360 184 RLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKS 220 (544)
Q Consensus 184 keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~e 220 (544)
++|.-+..-++.....|......|..+...+|-.|..
T Consensus 124 kEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~K 160 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKK 160 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhH
Confidence 3444444444444444444444454444444444433
No 257
>smart00338 BRLZ basic region leucin zipper.
Probab=26.27 E-value=2.9e+02 Score=21.61 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045360 68 IMLLDQRAKEIESKESDLVLVEERIKECNFELACK 102 (544)
Q Consensus 68 ~~~~e~lekEIes~ekeie~L~~~iee~~~el~~l 102 (544)
...+..|+..+..+..+...|...+..+..++..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444444444444444443
No 258
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.17 E-value=2.8e+02 Score=22.35 Aligned_cols=7 Identities=0% Similarity=0.373 Sum_probs=2.5
Q ss_pred hHHhhhh
Q 045360 46 LEKHFDL 52 (544)
Q Consensus 46 ~e~~~~s 52 (544)
+...+..
T Consensus 4 i~e~l~~ 10 (71)
T PF10779_consen 4 IKEKLNR 10 (71)
T ss_pred HHHHHHH
Confidence 3333333
No 259
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.04 E-value=1e+03 Score=27.20 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=12.9
Q ss_pred HHHHHHhhhhCCChhhHHHHhh
Q 045360 473 FSKIFNTIKRARDPASLVLDAM 494 (544)
Q Consensus 473 r~ei~~AL~~a~DPaklVLdai 494 (544)
-+...+|+..+|+|+-.|.-.|
T Consensus 615 ~~~~~~~~~~~~ln~~d~~~~~ 636 (654)
T KOG4809|consen 615 VSIGLAAVAMDVLNTGDVVWLL 636 (654)
T ss_pred HHHHHHhcccCCCCCCcccccc
Confidence 3445666677777766554433
No 260
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.91 E-value=4.8e+02 Score=29.89 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=5.7
Q ss_pred hhcCcCCCCCC
Q 045360 493 AMSGFYPPHSS 503 (544)
Q Consensus 493 ai~~f~~~~~~ 503 (544)
+=-||-|.+.+
T Consensus 620 s~tGFRPIg~g 630 (907)
T KOG2264|consen 620 SKTGFRPIGPG 630 (907)
T ss_pred cCcCcccCCCC
Confidence 44556555543
No 261
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=3.4e+02 Score=22.49 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 045360 56 SLEKQSNDVDMK----IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKE 105 (544)
Q Consensus 56 ~ie~~~~el~~k----~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~q 105 (544)
.+++|+-+||.+ ++-|+++..-+...+..+++++.+..-+...|..++..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 262
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.13 E-value=6.1e+02 Score=24.24 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 045360 288 GMKEREYNGLKKEVEDLSQELASKDKLLKIFKKS 321 (544)
Q Consensus 288 ~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke 321 (544)
.....++....+++...+.++..+++|.++..+|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555555555544
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.03 E-value=6.4e+02 Score=24.44 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045360 177 KKLGEVQRLVEEREKQIA 194 (544)
Q Consensus 177 ~eLee~~keie~~~eeLe 194 (544)
.++..+..++..+..+|.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 264
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.51 E-value=3.8e+02 Score=30.90 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=20.0
Q ss_pred hhhhHhhHHhhhhhhhhhhcccccCCcccchhhhHHHHH
Q 045360 425 FDSIRKTVEGQGKNLELQVKIEEQENLTSKGRNLQLLLN 463 (544)
Q Consensus 425 ~~~~~~~~~~~~k~le~~~~~~~~~~l~md~~gL~~f~~ 463 (544)
++.++..+-..+.+.+.. .+.++.+||..+..||.
T Consensus 393 lPkle~~L~~~l~~wE~e----~g~pFlv~G~~~le~l~ 427 (619)
T PF03999_consen 393 LPKLEEELKKKLEEWEEE----HGKPFLVDGERYLEYLE 427 (619)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTS--EETTEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH----cCCeEEEcCccHHHHHH
Confidence 444444444444444432 34567899999999998
No 265
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.35 E-value=9.4e+02 Score=26.17 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 045360 17 SKKQALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERIKECN 96 (544)
Q Consensus 17 ~~~~~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~iee~~ 96 (544)
-..+.|.+|-..||.+-+.|.-|.=.-+++|.+|.-..+-..+-+.-....-----+-++++.+.....+.++.+|.+..
T Consensus 157 r~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~ 236 (464)
T KOG4637|consen 157 RLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIH 236 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555666666677777777777766666666665443322222111111100001124555666666777778788777
Q ss_pred HHHHHHHHHHHH
Q 045360 97 FELACKQKELGL 108 (544)
Q Consensus 97 ~el~~le~ql~~ 108 (544)
..+..++..++.
T Consensus 237 ~sl~~l~d~lk~ 248 (464)
T KOG4637|consen 237 DSLTRLEDDLKA 248 (464)
T ss_pred HHHHhHHHHHHH
Confidence 777776666654
No 266
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.32 E-value=1.2e+03 Score=27.36 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045360 225 KKSLRLCETK 234 (544)
Q Consensus 225 ~~~le~~~ke 234 (544)
+..++.....
T Consensus 282 ~~~L~~~~~~ 291 (670)
T KOG0239|consen 282 QSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 267
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.18 E-value=4.9e+02 Score=22.78 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045360 259 VRRRENEVESIERELDSMKKKQKKY--SDDIGMKEREYNGLKKEVEDLSQELASKDKL 314 (544)
Q Consensus 259 ikele~k~~~~ee~L~el~~~~e~~--~kel~~keke~e~~~kelee~ekeL~~k~kq 314 (544)
+..+.......+.++..++..+..+ ..++..+.-...+.++.+..+...|.....+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444 4555555555555555555555555554443
No 268
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.83 E-value=1.3e+03 Score=27.52 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=19.6
Q ss_pred HhhHHHHHHhhhhCCChhhHHHHhhcCcCCCCCCCc
Q 045360 470 DLIFSKIFNTIKRARDPASLVLDAMSGFYPPHSSER 505 (544)
Q Consensus 470 ~~lr~ei~~AL~~a~DPaklVLdai~~f~~~~~~~~ 505 (544)
..||..|+.=|+..| -+..|++++...|
T Consensus 734 G~Lr~~v~~~L~~~~--------~V~~f~~a~~~~G 761 (771)
T TIGR01069 734 GKLRKGVQELLKNHP--------KVKSFRDAPPNDG 761 (771)
T ss_pred hHHHHHHHHHhcCCc--------ceeeecccCcccC
Confidence 468888888887765 3778887766533
No 269
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.76 E-value=6.3e+02 Score=23.94 Aligned_cols=12 Identities=25% Similarity=0.124 Sum_probs=4.4
Q ss_pred hhhhHHhhhhhH
Q 045360 43 WKDLEKHFDLGK 54 (544)
Q Consensus 43 ~~~~e~~~~s~~ 54 (544)
|-+=+.+-++..
T Consensus 23 ss~ee~~ve~~~ 34 (157)
T COG3352 23 SSDEEKQVEAIH 34 (157)
T ss_pred hhhhhHhHHHhh
Confidence 333333333333
No 270
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.50 E-value=1.2e+03 Score=27.15 Aligned_cols=7 Identities=43% Similarity=0.639 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 045360 517 SCILLLE 523 (544)
Q Consensus 517 ~cilLLE 523 (544)
.|..|.|
T Consensus 555 vcnWlae 561 (861)
T KOG1899|consen 555 VCNWLAE 561 (861)
T ss_pred HHHHHHH
Confidence 3444433
No 271
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.36 E-value=4e+02 Score=21.45 Aligned_cols=8 Identities=0% Similarity=0.480 Sum_probs=3.0
Q ss_pred HhhHHHHH
Q 045360 59 KQSNDVDM 66 (544)
Q Consensus 59 ~~~~el~~ 66 (544)
.++.+|+.
T Consensus 4 ~Ri~~LE~ 11 (69)
T PF04102_consen 4 ERIEELEI 11 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 272
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.32 E-value=6.5e+02 Score=28.89 Aligned_cols=16 Identities=6% Similarity=0.318 Sum_probs=8.8
Q ss_pred hhhHhhHHHHHHhhhh
Q 045360 467 QKHDLIFSKIFNTIKR 482 (544)
Q Consensus 467 ke~~~lr~ei~~AL~~ 482 (544)
++..++-+.+.+||+.
T Consensus 509 s~~~~~~~tvlA~lR~ 524 (907)
T KOG2264|consen 509 SDRHLLARTVLAALRY 524 (907)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555666666653
No 273
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.14 E-value=4.2e+02 Score=21.64 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=13.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 045360 193 IALKDSKISSIQSMIEEYEEELKAKEKSYDEVK 225 (544)
Q Consensus 193 Le~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~ 225 (544)
|..++..+...+.-++.++..+.....++..++
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333
No 274
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.95 E-value=4.6e+02 Score=21.99 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045360 207 IEEYEEELKAKEKSYDEVKKSLRLCETKL 235 (544)
Q Consensus 207 l~e~~~EL~~ke~el~~~~~~le~~~keL 235 (544)
|+.+..+++..+.+-+....++.+.-.++
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em 41 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEM 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 275
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.82 E-value=1.7e+03 Score=28.48 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 045360 177 KKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLR 229 (544)
Q Consensus 177 ~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le 229 (544)
.++....+........+..+...+......++.....+......+......+.
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555555555555555554444444444
No 276
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.66 E-value=4.5e+02 Score=21.80 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhh-HhhchhhhHHhhhhh
Q 045360 24 RSFDIAHEQANSVLK-FTVQWKDLEKHFDLG 53 (544)
Q Consensus 24 ~~~~~i~~~a~~i~~-~~~~~~~~e~~~~s~ 53 (544)
++||.|...+++.+. +.--=+|++..+...
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~ 36 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNIRAR 36 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 566777777766665 222233444444433
No 277
>PF13514 AAA_27: AAA domain
Probab=22.58 E-value=1.5e+03 Score=27.96 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=8.6
Q ss_pred hhHHHHHHhhhhC
Q 045360 471 LIFSKIFNTIKRA 483 (544)
Q Consensus 471 ~lr~ei~~AL~~a 483 (544)
.-++.+.-||+.|
T Consensus 1029 GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1029 GTRDQLYLALRLA 1041 (1111)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777777766
No 278
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1e+02 Score=33.48 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=40.4
Q ss_pred HHHhhcCcCCCCCCCcchhhhhhhhHHHHHHHHh--------hhhh-----------cCCCCChhHHHHHhhc
Q 045360 490 VLDAMSGFYPPHSSERDVEFQVGLIRRSCILLLE--------HLLT-----------VAPEINAQVRDEALKV 543 (544)
Q Consensus 490 VLdai~~f~~~~~~~~~~~~~~~~~r~~cilLLE--------~L~~-----------~~p~i~~~vke~A~~l 543 (544)
||++|.+|.-|-+ |+..++..+|.+-+.+|- .|.. .+|..++.++--|.+|
T Consensus 213 vL~~lk~WLePLP---D~SLPal~Ir~~ll~iL~dlpi~~~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kL 282 (417)
T KOG1793|consen 213 VLDSLKEWLEPLP---DGSLPALNIRKSLLDILNDLPIDKREHLKESGLGKVVMFLSKSPKETKENKRLANKL 282 (417)
T ss_pred HHHHHHHHhccCC---CCCCcchHHHHHHHHHHhcCCcchHHHHHhcCCCeEEEEEecCCccchHHHHHHHHH
Confidence 8999999998776 566777779999888884 4431 4899999999888876
No 279
>PRK02119 hypothetical protein; Provisional
Probab=22.10 E-value=4.5e+02 Score=21.57 Aligned_cols=6 Identities=0% Similarity=0.263 Sum_probs=2.2
Q ss_pred HhhHHH
Q 045360 59 KQSNDV 64 (544)
Q Consensus 59 ~~~~el 64 (544)
.|+-+|
T Consensus 9 ~Ri~~L 14 (73)
T PRK02119 9 NRIAEL 14 (73)
T ss_pred HHHHHH
Confidence 333333
No 280
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.96 E-value=2.6e+02 Score=24.91 Aligned_cols=53 Identities=15% Similarity=0.366 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKEL 252 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel 252 (544)
+..++.-+.....+|....+.|..+-..|....+.|-.-...|..+...+..+
T Consensus 17 ~k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~ 69 (116)
T PF05064_consen 17 GKTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKA 69 (116)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888888888888888888888777777776666655443
No 281
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.86 E-value=7.4e+02 Score=24.01 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 045360 69 MLLDQRAKEIESKESDLVL 87 (544)
Q Consensus 69 ~~~e~lekEIes~ekeie~ 87 (544)
..+..+..++......+..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~ 87 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEE 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333333
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.71 E-value=4.2e+02 Score=21.14 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 045360 258 RVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREY 294 (544)
Q Consensus 258 ~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~ 294 (544)
+++.+......++..|.+.+.+...+..++..+.++.
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444443333
No 283
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.49 E-value=95 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=5.5
Q ss_pred hchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 045360 41 VQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVL 87 (544)
Q Consensus 41 ~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~ 87 (544)
+.|+-+|+-+..--.+++.+.+.....-.+|..+-+.|-.-...|..
T Consensus 15 l~~k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~ 61 (116)
T PF05064_consen 15 LKGKTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISK 61 (116)
T ss_dssp ----------------------------------TCHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788877777777777777666655555555554444444333333
No 284
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.09 E-value=5.6e+02 Score=22.38 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhhhhHhhc
Q 045360 23 RRSFDIAHEQANSVLKFTVQ 42 (544)
Q Consensus 23 ~~~~~~i~~~a~~i~~~~~~ 42 (544)
++=+.-|.+.++.+..+...
T Consensus 6 ~~~w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 6 KKNWGIIWAVFGIAGGIFWL 25 (106)
T ss_pred HhCcHHHHHHHHHHHHHHHH
Confidence 33444455555444444333
No 285
>PRK04325 hypothetical protein; Provisional
Probab=21.05 E-value=4.7e+02 Score=21.46 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=13.2
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHhHHH
Q 045360 193 IALKDSKISSIQSMIEEYEEELKAKEKSYDE 223 (544)
Q Consensus 193 Le~~e~~l~~l~~~l~e~~~EL~~ke~el~~ 223 (544)
|..++..+...+.-++.++..+.....++..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~ 41 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDL 41 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333
No 286
>PRK00736 hypothetical protein; Provisional
Probab=21.00 E-value=4.5e+02 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=5.7
Q ss_pred HHHhhHHHHHHhHHH
Q 045360 195 LKDSKISSIQSMIEE 209 (544)
Q Consensus 195 ~~e~~l~~l~~~l~e 209 (544)
.++..+...+.-++.
T Consensus 9 ~LE~klafqe~tie~ 23 (68)
T PRK00736 9 ELEIRVAEQEKTIEE 23 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 287
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=20.48 E-value=7.2e+02 Score=23.37 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=27.8
Q ss_pred HhhchhhhHHhhhhhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 045360 39 FTVQWKDLEKHFDLGKKSLEKQS--NDVDMKIMLLDQRAKEIESKESDLVLVEE 90 (544)
Q Consensus 39 ~~~~~~~~e~~~~s~~~~ie~~~--~el~~k~~~~e~lekEIes~ekeie~L~~ 90 (544)
|--+=.=|..+|+.++..+..+. ++.......|..+...|....+++.-|..
T Consensus 29 FG~~~~LF~~Qf~~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~ 82 (146)
T PF05852_consen 29 FGKSSSLFRAQFQFTKKSLRSHNSLREECEIKNKVSSLETEISEKKKELSHLKK 82 (146)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445666777776665433 33333344555666666665555555544
No 288
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.25 E-value=7.2e+02 Score=23.25 Aligned_cols=57 Identities=28% Similarity=0.351 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHhHHHHHHHHHHHHHhH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKI--SSIQSMIEEYEEELKAKEKSY 221 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l--~~l~~~l~e~~~EL~~ke~el 221 (544)
+..+..++..+..++..+...+..+..+|..+...+ ..+...+..+..++......+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555554442 333334434333333333333
Done!