Query 045360
Match_columns 544
No_of_seqs 179 out of 195
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.6 2.3E-07 7.8E-12 110.7 14.7 70 71-140 859-928 (1184)
2 1i84_S Smooth muscle myosin he 98.4 1.1E-06 3.9E-11 104.7 11.4 90 63-152 858-947 (1184)
3 3na7_A HP0958; flagellar bioge 97.6 0.0093 3.2E-07 59.1 22.8 56 86-141 28-83 (256)
4 3na7_A HP0958; flagellar bioge 97.4 0.033 1.1E-06 55.1 22.9 68 81-148 16-83 (256)
5 3vkg_A Dynein heavy chain, cyt 96.0 3.3 0.00011 54.0 31.2 109 19-130 1861-1981(3245)
6 3vkg_A Dynein heavy chain, cyt 95.3 7.3 0.00025 50.9 30.6 9 529-537 2285-2293(3245)
7 3o0z_A RHO-associated protein 94.1 3.5 0.00012 38.0 22.5 87 68-154 12-98 (168)
8 2dfs_A Myosin-5A; myosin-V, in 92.8 2.7 9.3E-05 49.6 18.0 12 35-46 889-900 (1080)
9 3u1c_A Tropomyosin alpha-1 cha 91.3 6 0.00021 33.3 14.7 41 114-154 33-73 (101)
10 3q8t_A Beclin-1; autophagy, AT 90.6 6.8 0.00023 32.8 14.6 82 165-246 13-94 (96)
11 3oja_B Anopheles plasmodium-re 90.5 1.6 5.4E-05 47.4 12.1 38 279-316 538-575 (597)
12 2v71_A Nuclear distribution pr 90.4 12 0.0004 35.2 22.8 31 123-153 8-38 (189)
13 2efr_A General control protein 90.1 11 0.00037 34.4 23.9 28 274-301 122-149 (155)
14 3u59_A Tropomyosin beta chain; 89.1 9.2 0.00032 32.1 14.2 38 117-154 36-73 (101)
15 4gkw_A Spindle assembly abnorm 89.0 12 0.0004 33.1 21.7 71 71-141 13-83 (167)
16 2dfs_A Myosin-5A; myosin-V, in 88.5 15 0.0005 43.4 18.9 10 22-31 767-776 (1080)
17 2efr_A General control protein 87.8 16 0.00055 33.3 23.7 53 178-230 99-151 (155)
18 2v71_A Nuclear distribution pr 87.0 20 0.00069 33.6 22.9 66 172-237 90-155 (189)
19 3u1c_A Tropomyosin alpha-1 cha 86.3 14 0.00048 31.1 15.1 89 129-234 6-94 (101)
20 1ic2_A Tropomyosin alpha chain 84.9 13 0.00043 29.9 11.2 22 131-152 5-26 (81)
21 2jee_A YIIU; FTSZ, septum, coi 84.6 9.7 0.00033 30.9 10.1 70 70-139 7-76 (81)
22 3hnw_A Uncharacterized protein 81.4 13 0.00044 33.1 10.8 26 40-65 20-45 (138)
23 1ic2_A Tropomyosin alpha chain 79.7 22 0.00074 28.5 10.7 39 303-341 38-76 (81)
24 3u59_A Tropomyosin beta chain; 78.3 29 0.00098 29.0 15.3 19 130-148 7-25 (101)
25 2fxo_A Myosin heavy chain, car 77.9 35 0.0012 29.7 18.5 98 255-352 18-118 (129)
26 3o0z_A RHO-associated protein 76.8 46 0.0016 30.6 21.7 29 219-247 48-76 (168)
27 3hnw_A Uncharacterized protein 75.6 29 0.00098 30.9 11.2 19 181-199 86-104 (138)
28 4gkw_A Spindle assembly abnorm 71.7 52 0.0018 28.9 22.5 26 225-250 59-84 (167)
29 3swk_A Vimentin; cytoskeleton, 71.5 40 0.0014 27.4 11.2 10 87-96 4-13 (86)
30 2b9c_A Striated-muscle alpha t 71.2 58 0.002 29.2 13.9 67 200-276 54-120 (147)
31 1l8d_A DNA double-strand break 67.1 54 0.0019 27.3 11.1 34 73-106 7-40 (112)
32 3ol1_A Vimentin; structural ge 64.9 67 0.0023 27.6 14.9 9 234-242 21-29 (119)
33 3ghg_A Fibrinogen alpha chain; 64.7 1.6E+02 0.0054 31.8 17.1 29 198-226 131-159 (562)
34 2v4h_A NF-kappa-B essential mo 63.0 72 0.0024 27.2 11.9 41 202-242 66-106 (110)
35 3ghg_A Fibrinogen alpha chain; 62.2 73 0.0025 34.3 12.5 37 42-78 47-83 (562)
36 3tnu_A Keratin, type I cytoske 60.2 86 0.0029 27.2 12.5 22 292-313 105-126 (131)
37 3tnu_A Keratin, type I cytoske 54.8 1.1E+02 0.0036 26.6 13.4 16 117-132 37-52 (131)
38 3cvf_A Homer-3, homer protein 52.7 72 0.0025 25.6 8.2 54 90-143 13-66 (79)
39 3tnu_B Keratin, type II cytosk 51.8 1.2E+02 0.004 26.2 13.9 11 120-130 38-48 (129)
40 2b9c_A Striated-muscle alpha t 51.2 1.3E+02 0.0046 26.7 17.6 45 201-245 69-113 (147)
41 2rlw_A PLNF; toxin; NMR {Lacto 50.7 2.6 8.9E-05 27.5 -0.4 24 476-499 10-33 (34)
42 2jee_A YIIU; FTSZ, septum, coi 50.7 98 0.0033 25.0 11.3 31 165-195 15-45 (81)
43 3oja_A Leucine-rich immune mol 49.6 2.4E+02 0.0083 29.2 16.2 14 186-199 451-464 (487)
44 3tnu_B Keratin, type II cytosk 47.5 1.4E+02 0.0047 25.8 13.9 11 303-313 114-124 (129)
45 3l4q_C Phosphatidylinositol 3- 44.5 1.9E+02 0.0065 26.5 16.4 65 77-141 90-154 (170)
46 1m1j_B Fibrinogen beta chain; 44.4 3.1E+02 0.011 29.0 15.4 39 39-77 80-118 (464)
47 3hhm_B NISH2 P85alpha; PI3KCA, 43.6 2.6E+02 0.0087 28.7 13.0 63 77-139 199-261 (373)
48 3q8t_A Beclin-1; autophagy, AT 42.0 1.5E+02 0.005 24.5 14.2 73 259-331 13-85 (96)
49 3mq7_A Bone marrow stromal ant 40.5 1.8E+02 0.0061 25.1 13.7 45 95-139 23-67 (121)
50 4h22_A Leucine-rich repeat fli 40.5 1.6E+02 0.0054 24.9 8.7 73 78-150 18-90 (103)
51 3nmd_A CGMP dependent protein 40.1 59 0.002 25.7 5.7 19 113-131 42-60 (72)
52 3jsv_C NF-kappa-B essential mo 38.6 1.7E+02 0.0058 24.3 9.7 43 200-242 42-84 (94)
53 3nmd_A CGMP dependent protein 37.1 91 0.0031 24.6 6.4 16 111-126 47-62 (72)
54 2v66_B Nuclear distribution pr 37.0 2E+02 0.0067 24.6 16.1 9 124-132 41-49 (111)
55 3i00_A HIP-I, huntingtin-inter 36.1 2.1E+02 0.0072 24.6 9.6 17 203-219 45-61 (120)
56 3a7p_A Autophagy protein 16; c 36.1 2.4E+02 0.0083 25.3 11.6 26 207-232 98-123 (152)
57 3qh9_A Liprin-beta-2; coiled-c 34.9 1.8E+02 0.0061 23.4 9.6 17 118-134 47-63 (81)
58 2v4h_A NF-kappa-B essential mo 34.5 2.2E+02 0.0074 24.3 12.2 28 94-121 28-55 (110)
59 3a7o_A Autophagy protein 16; c 34.1 1.7E+02 0.0058 23.0 7.9 41 91-131 19-59 (75)
60 3a7p_A Autophagy protein 16; c 33.5 2.7E+02 0.0091 25.1 12.6 44 171-214 90-133 (152)
61 3qh9_A Liprin-beta-2; coiled-c 31.3 2.1E+02 0.007 23.1 9.9 7 166-172 22-28 (81)
62 3swk_A Vimentin; cytoskeleton, 31.2 2.1E+02 0.0071 23.1 10.7 23 73-95 4-26 (86)
63 1deq_A Fibrinogen (alpha chain 30.9 4.6E+02 0.016 27.0 14.3 28 286-313 135-162 (390)
64 3efg_A Protein SLYX homolog; x 29.0 1E+02 0.0035 24.6 5.6 41 55-95 10-54 (78)
65 3l4q_C Phosphatidylinositol 3- 29.0 3.4E+02 0.012 24.8 16.3 51 269-319 101-151 (170)
66 3trt_A Vimentin; cytoskeleton, 28.4 2E+02 0.007 22.1 10.0 16 52-67 9-24 (77)
67 3efg_A Protein SLYX homolog; x 25.5 2.1E+02 0.0071 22.7 6.9 37 193-229 16-52 (78)
68 2xzr_A Immunoglobulin-binding 25.5 2.9E+02 0.01 22.9 9.6 72 21-92 35-106 (114)
69 3k1h_A HP1076, putative unchar 23.3 47 0.0016 30.0 2.9 40 457-499 110-153 (158)
70 1t2k_D Cyclic-AMP-dependent tr 22.3 2.4E+02 0.0083 20.9 6.8 32 70-101 23-54 (61)
71 3mq9_A Bone marrow stromal ant 22.1 6.5E+02 0.022 25.7 16.6 123 40-183 347-470 (471)
72 2ocy_A RAB guanine nucleotide 21.6 4.4E+02 0.015 23.7 19.8 28 221-248 110-137 (154)
73 1deq_A Fibrinogen (alpha chain 21.4 6.8E+02 0.023 25.8 13.7 23 44-66 52-74 (390)
74 3mq7_A Bone marrow stromal ant 20.3 4.1E+02 0.014 22.8 12.4 55 166-223 49-103 (121)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.61 E-value=2.3e-07 Score=110.72 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHH
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREE 140 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~e 140 (544)
+..+..++..+...+..+...+.++...+..++.+...+...+......+.....++..+...+..+...
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~ 928 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444443333333333333333333333333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.35 E-value=1.1e-06 Score=104.71 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 045360 63 DVDMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELS 142 (544)
Q Consensus 63 el~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~ 142 (544)
++......+..+...+...+..+..++.++..+..+...+..++......+.....++.....++..+...+..+...+.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555556666666666666666666666655565666666666666666666666666666655
Q ss_pred HHHHhhhhhh
Q 045360 143 LVQESVNNCQ 152 (544)
Q Consensus 143 ~~~~~~ee~~ 152 (544)
.....+..+.
T Consensus 938 e~ee~l~el~ 947 (1184)
T 1i84_S 938 EEEERSQQLQ 947 (1184)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.65 E-value=0.0093 Score=59.09 Aligned_cols=56 Identities=7% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHH
Q 045360 86 VLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREEL 141 (544)
Q Consensus 86 e~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el 141 (544)
..+...+..+..++..+...+..+...+.....++...+.++..+..++......+
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444445555555555555555555444443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.40 E-value=0.033 Score=55.10 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 045360 81 KESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESV 148 (544)
Q Consensus 81 ~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ 148 (544)
.+..+..+...+.++..++..++..+..+...+.....++.....++..+...+......+...+..+
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666665555555555555555555555555555555544444444444
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.02 E-value=3.3 Score=54.05 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhH-----------hh-chhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 045360 19 KQALRRSFDIAHEQANSVLKF-----------TV-QWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLV 86 (544)
Q Consensus 19 ~~~~~~~~~~i~~~a~~i~~~-----------~~-~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie 86 (544)
++++-.+|-.||..+..+..- |. +|=++ +...+.-+.....++..+..-+..=-..|.....+++
T Consensus 1861 ~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLel---i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~ 1937 (3245)
T 3vkg_A 1861 RDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDF---INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVK 1937 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999766554320 11 11111 1112223334444443332222211122222355556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Q 045360 87 LVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLL 130 (544)
Q Consensus 87 ~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l 130 (544)
.|+..+.....+|....++...+...|.....+....+..+...
T Consensus 1938 ~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~ 1981 (3245)
T 3vkg_A 1938 DLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAREL 1981 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444444444444444444333333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.33 E-value=7.3 Score=50.93 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=6.2
Q ss_pred CCCCChhHH
Q 045360 529 APEINAQVR 537 (544)
Q Consensus 529 ~p~i~~~vk 537 (544)
+|.++|+|-
T Consensus 2285 np~y~Pev~ 2293 (3245)
T 3vkg_A 2285 TAHFTPDLC 2293 (3245)
T ss_dssp TCCCCHHHH
T ss_pred CCCCCHHHH
Confidence 677777764
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.13 E-value=3.5 Score=38.02 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 045360 68 IMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQES 147 (544)
Q Consensus 68 ~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~ 147 (544)
++++.++..-+.+......+++....++...+.+++...++++..+..+...-..+..++..|+..++.-+.........
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665555555555667777777777777777777777777777777777777777777777777766666666666
Q ss_pred hhhhhhh
Q 045360 148 VNNCQVD 154 (544)
Q Consensus 148 ~ee~~~k 154 (544)
+.+++.+
T Consensus 92 ~~elq~r 98 (168)
T 3o0z_A 92 IGDLQAR 98 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6566555
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.78 E-value=2.7 Score=49.61 Aligned_cols=12 Identities=0% Similarity=0.357 Sum_probs=5.6
Q ss_pred hhhhHhhchhhh
Q 045360 35 SVLKFTVQWKDL 46 (544)
Q Consensus 35 ~i~~~~~~~~~~ 46 (544)
.+..+...|+-.
T Consensus 889 aai~iQs~~R~~ 900 (1080)
T 2dfs_A 889 AIVYLQCCYRRM 900 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444455543
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.25 E-value=6 Score=33.32 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=21.0
Q ss_pred HhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 114 GECDCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 114 ~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
............++.+|..++..+..+++.....+.....+
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555666666665555555555555444433
No 10
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.58 E-value=6.8 Score=32.76 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELER 244 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~ 244 (544)
+..+..+-..+..+|..+.++...+..+|..++.....+...=...-.+++....++...++...+++..+.+-..+|+.
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445556666666666666777777777666777777778889999999999999999999999999888876
Q ss_pred HH
Q 045360 245 TQ 246 (544)
Q Consensus 245 ~~ 246 (544)
++
T Consensus 93 L~ 94 (96)
T 3q8t_A 93 LK 94 (96)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.47 E-value=1.6 Score=47.44 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=15.4
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045360 279 KQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLK 316 (544)
Q Consensus 279 ~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e 316 (544)
....+.++....++.++..+..+.++..++...+.++.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444333333
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.39 E-value=12 Score=35.21 Aligned_cols=31 Identities=6% Similarity=-0.036 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 045360 123 KESELNLLSVSLDLKREELSLVQESVNNCQV 153 (544)
Q Consensus 123 ~~~El~~l~~~le~~~~el~~~~~~~ee~~~ 153 (544)
...++..-+.....+...+..++..+++++.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe 38 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQE 38 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.11 E-value=11 Score=34.36 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=11.2
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHH
Q 045360 274 DSMKKKQKKYSDDIGMKEREYNGLKKEV 301 (544)
Q Consensus 274 ~el~~~~e~~~kel~~keke~e~~~kel 301 (544)
..+...++....++......|+...+++
T Consensus 122 ~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 122 KAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3333333344444444444444443333
No 14
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.07 E-value=9.2 Score=32.08 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=18.6
Q ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 045360 117 DCELQLKESELNLLSVSLDLKREELSLVQESVNNCQVD 154 (544)
Q Consensus 117 ~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k 154 (544)
.........++.+|..++..+...++.....+.....+
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555544444444433
No 15
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=88.96 E-value=12 Score=33.07 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHH
Q 045360 71 LDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREEL 141 (544)
Q Consensus 71 ~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el 141 (544)
|..+...++++..++++.+..++-..+.+..-+..+..+++.=--..++|-.++.++..++.+++.....+
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444455555555555444444444444444444444444444455666666667777766666655544
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.54 E-value=15 Score=43.42 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045360 22 LRRSFDIAHE 31 (544)
Q Consensus 22 ~~~~~~~i~~ 31 (544)
++...-.||.
T Consensus 767 l~~aa~~IQa 776 (1080)
T 2dfs_A 767 LRAACIRIQK 776 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.77 E-value=16 Score=33.25 Aligned_cols=53 Identities=8% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 045360 178 KLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRL 230 (544)
Q Consensus 178 eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~ 230 (544)
.+.-+.+.++.++..|......+..+...++..-.+|+.....|....+.|..
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 33444444444444455444555555555555445555444444444444443
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.04 E-value=20 Score=33.64 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 172 IELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLEC 237 (544)
Q Consensus 172 ie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~ 237 (544)
+..+..++..+......+...+-.++-.-..++........-+......+....++..-+..+++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555545555555555666666666666666666666666654
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.29 E-value=14 Score=31.06 Aligned_cols=89 Identities=7% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHH
Q 045360 129 LLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIE 208 (544)
Q Consensus 129 ~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~ 208 (544)
.++.++..++.+.+....+.+.++.+ +.........++.++..+++.+..++.+|... ...+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~----------~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~-------ee~L~ 68 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEAD----------KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV-------LEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 34444444444444444444444433 33333333334444444444444433333333 33333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045360 209 EYEEELKAKEKSYDEVKKSLRLCETK 234 (544)
Q Consensus 209 e~~~EL~~ke~el~~~~~~le~~~ke 234 (544)
.....|....+........+.++++.
T Consensus 69 ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 69 KSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.90 E-value=13 Score=29.92 Aligned_cols=22 Identities=0% Similarity=0.086 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhhh
Q 045360 131 SVSLDLKREELSLVQESVNNCQ 152 (544)
Q Consensus 131 ~~~le~~~~el~~~~~~~ee~~ 152 (544)
+.++..+..+.+......+.++
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e 26 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAE 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.57 E-value=9.7 Score=30.91 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHH
Q 045360 70 LLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKRE 139 (544)
Q Consensus 70 ~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~ 139 (544)
.++.|+..|..+-..|..|+..++++..+-..+..+...+....+.+..+...+..+......++..+-.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666665666666666666666666666666555555555666666666666666665555433
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.41 E-value=13 Score=33.15 Aligned_cols=26 Identities=4% Similarity=0.040 Sum_probs=14.8
Q ss_pred hhchhhhHHhhhhhHHHHHHhhHHHH
Q 045360 40 TVQWKDLEKHFDLGKKSLEKQSNDVD 65 (544)
Q Consensus 40 ~~~~~~~e~~~~s~~~~ie~~~~el~ 65 (544)
++.-.+-++|+...-..+..++.++.
T Consensus 20 ~i~g~e~ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 20 KLGGYESEEYLQRVASYINNKITEFN 45 (138)
T ss_dssp EECSCSCHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33333445666666666666666664
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.66 E-value=22 Score=28.52 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045360 303 DLSQELASKDKLLKIFKKSIEECSREFQVKKEELSSIKS 341 (544)
Q Consensus 303 e~ekeL~~k~kq~e~~~ke~e~k~~~~~~~~~el~s~~~ 341 (544)
..+.++.++++.+..+.-+|+-.+..+......|+...+
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.27 E-value=29 Score=28.99 Aligned_cols=19 Identities=0% Similarity=0.076 Sum_probs=7.1
Q ss_pred HHHhHHHHHHHHHHHHHhh
Q 045360 130 LSVSLDLKREELSLVQESV 148 (544)
Q Consensus 130 l~~~le~~~~el~~~~~~~ 148 (544)
++.++..++-+.+....+.
T Consensus 7 iKkKm~~lk~e~e~a~d~a 25 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRA 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.87 E-value=35 Score=29.75 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 255 FRRRVRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKE---VEDLSQELASKDKLLKIFKKSIEECSREFQV 331 (544)
Q Consensus 255 ~e~~ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~ke---lee~ekeL~~k~kq~e~~~ke~e~k~~~~~~ 331 (544)
....++.+...+...+....++......+..+.+.+..++.+-... .+++-..|...+-+++..++++.+.-.+.+.
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544444433332 2344455555555566666666666666666
Q ss_pred HHHHhhhhHHHHHHhhHHHHH
Q 045360 332 KKEELSSIKSEIVECSDEVEL 352 (544)
Q Consensus 332 ~~~el~s~~~~~~~~~~ele~ 352 (544)
+..+|...++.++..|.+|+.
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.84 E-value=46 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=10.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 219 KSYDEVKKSLRLCETKLECKKKELERTQS 247 (544)
Q Consensus 219 ~el~~~~~~le~~~keLe~k~keLe~~~~ 247 (544)
..+..++..+..+.......++++-.++.
T Consensus 48 ~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 48 SLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.58 E-value=29 Score=30.86 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 045360 181 EVQRLVEEREKQIALKDSK 199 (544)
Q Consensus 181 e~~keie~~~eeLe~~e~~ 199 (544)
.+.+++..+..++.....+
T Consensus 86 ~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 28
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=71.75 E-value=52 Score=28.93 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 225 KKSLRLCETKLECKKKELERTQSSIK 250 (544)
Q Consensus 225 ~~~le~~~keLe~k~keLe~~~~eie 250 (544)
++.+..++.++...++-|+.....++
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555555555555554444443
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=71.45 E-value=40 Score=27.43 Aligned_cols=10 Identities=0% Similarity=0.189 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 045360 87 LVEERIKECN 96 (544)
Q Consensus 87 ~L~~~iee~~ 96 (544)
.|+.+|..+.
T Consensus 4 eLr~qi~~l~ 13 (86)
T 3swk_A 4 ELRRQVDQLT 13 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=71.18 E-value=58 Score=29.19 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERTQSSIKELLSFRRRVRRRENEVESIERELDSM 276 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~~~eieel~~~e~~ikele~k~~~~ee~L~el 276 (544)
+..++.++.+...-...-...+.....++.....+|+.-....+ .++..+.+++..++.....|..|
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae----------~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE----------LSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444433322222 22444444444444444444444
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=67.09 E-value=54 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045360 73 QRAKEIESKESDLVLVEERIKECNFELACKQKEL 106 (544)
Q Consensus 73 ~lekEIes~ekeie~L~~~iee~~~el~~le~ql 106 (544)
.+...+......+..|+..+..+..++..++..+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444433
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.86 E-value=67 Score=27.56 Aligned_cols=9 Identities=0% Similarity=0.305 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 045360 234 KLECKKKEL 242 (544)
Q Consensus 234 eLe~k~keL 242 (544)
.+...++++
T Consensus 21 ~I~~LR~qi 29 (119)
T 3ol1_A 21 EMRELRRQV 29 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.72 E-value=1.6e+02 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=16.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 045360 198 SKISSIQSMIEEYEEELKAKEKSYDEVKK 226 (544)
Q Consensus 198 ~~l~~l~~~l~e~~~EL~~ke~el~~~~~ 226 (544)
..+..|...|+++..++..+++.++-+..
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666665555
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.02 E-value=72 Score=27.24 Aligned_cols=41 Identities=12% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045360 202 SIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKEL 242 (544)
Q Consensus 202 ~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keL 242 (544)
-+..+++-+...|..-+..-.....+++.+..++.+..+++
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554444444433
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.16 E-value=73 Score=34.31 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=17.7
Q ss_pred chhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045360 42 QWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEI 78 (544)
Q Consensus 42 ~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEI 78 (544)
.=|.|+.-++....++-.++.+|.+.-.++....+++
T Consensus 47 SGCrLQglLdkqErDltkrINELKnqLEdlsKnsKds 83 (562)
T 3ghg_A 47 SGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDS 83 (562)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhH
Confidence 3345555555555555555555544444444443333
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.24 E-value=86 Score=27.23 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045360 292 REYNGLKKEVEDLSQELASKDK 313 (544)
Q Consensus 292 ke~e~~~kelee~ekeL~~k~k 313 (544)
.+|....+.=-.++-+|...++
T Consensus 105 ~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333344444444444
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.81 E-value=1.1e+02 Score=26.62 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=4.6
Q ss_pred HHHhhhHHHHHHHHHH
Q 045360 117 DCELQLKESELNLLSV 132 (544)
Q Consensus 117 ~kEi~~~~~El~~l~~ 132 (544)
..+|...+..+..|..
T Consensus 37 k~Ei~elrr~iq~L~~ 52 (131)
T 3tnu_A 37 KSEISELRRTMQNLEI 52 (131)
T ss_dssp ----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.65 E-value=72 Score=25.64 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHH
Q 045360 90 ERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSL 143 (544)
Q Consensus 90 ~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~ 143 (544)
.++......=..++.+++.+...++.+..+-.....++..+...++..+.++..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333333344555555555666666666666666666666666665555444
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.77 E-value=1.2e+02 Score=26.22 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=3.9
Q ss_pred hhhHHHHHHHH
Q 045360 120 LQLKESELNLL 130 (544)
Q Consensus 120 i~~~~~El~~l 130 (544)
|...+..+..+
T Consensus 38 i~elrr~iq~L 48 (129)
T 3tnu_B 38 ISEMNRMIQRL 48 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=51.15 E-value=1.3e+02 Score=26.74 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 201 SSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKELERT 245 (544)
Q Consensus 201 ~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keLe~~ 245 (544)
......|++....|.-.+..+.....+.+.....+.....+|...
T Consensus 69 eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555544444444444444433
No 41
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=50.75 E-value=2.6 Score=27.48 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.6
Q ss_pred HHHhhhhCCChhhHHHHhhcCcCC
Q 045360 476 IFNTIKRARDPASLVLDAMSGFYP 499 (544)
Q Consensus 476 i~~AL~~a~DPaklVLdai~~f~~ 499 (544)
+....+.|+-||..|+.|+.||+.
T Consensus 10 vrnnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 10 VRNNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccChHHHHHHHHHhhcc
Confidence 445567788999999999999974
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.68 E-value=98 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 165 LEKCCDEIELKEKKLGEVQRLVEEREKQIAL 195 (544)
Q Consensus 165 lE~~~~eie~ke~eLee~~keie~~~eeLe~ 195 (544)
+....+.|..+.-++++++.....+..+...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444433
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.59 E-value=2.4e+02 Score=29.25 Aligned_cols=14 Identities=14% Similarity=-0.104 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHhh
Q 045360 186 VEEREKQIALKDSK 199 (544)
Q Consensus 186 ie~~~eeLe~~e~~ 199 (544)
...+...+.++...
T Consensus 451 ~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 451 NARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhh
Confidence 33333333333333
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.50 E-value=1.4e+02 Score=25.78 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 045360 303 DLSQELASKDK 313 (544)
Q Consensus 303 e~ekeL~~k~k 313 (544)
.++-+|...++
T Consensus 114 ~Ld~EIatYRk 124 (129)
T 3tnu_B 114 ALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 45
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=44.52 E-value=1.9e+02 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.029 Sum_probs=51.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHH
Q 045360 77 EIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREEL 141 (544)
Q Consensus 77 EIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el 141 (544)
||..+....+.|+.++.+++..-..+...++.......+++++++.++=++..|.+.-+....-|
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44445566678899999988888888888888778888899999999888888887776665443
No 46
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.41 E-value=3.1e+02 Score=29.04 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=25.7
Q ss_pred HhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 045360 39 FTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKE 77 (544)
Q Consensus 39 ~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekE 77 (544)
+..--|.+.++|......|...+.+|+.+.-+|+....+
T Consensus 80 ~CPTtC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 80 LCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp EEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhH
Confidence 344457777888777777777777777766566554443
No 47
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=43.64 E-value=2.6e+02 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=47.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHH
Q 045360 77 EIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKRE 139 (544)
Q Consensus 77 EIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~ 139 (544)
++..+...++.|+.++.+++.....++..++.....+.+.+++++..+=++-.|.+.-++...
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~ 261 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLM 261 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 555667777888888888888888888888877778888888888888888888776555543
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.03 E-value=1.5e+02 Score=24.51 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045360 259 VRRRENEVESIERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFKKSIEECSREFQV 331 (544)
Q Consensus 259 ikele~k~~~~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ke~e~k~~~~~~ 331 (544)
+..+.......-.+|..+.+....+..++..++.+.......=..+-.+......++-....++.|-..+|.-
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333333334444444444444444444444444433
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.52 E-value=1.8e+02 Score=25.07 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHH
Q 045360 95 CNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKRE 139 (544)
Q Consensus 95 ~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~ 139 (544)
|++----++.+|...+.-+...+.+..+-+..+..|+.+++....
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka 67 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567777777777777788888888888888776665433
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.46 E-value=1.6e+02 Score=24.85 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 045360 78 IESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLSVSLDLKREELSLVQESVNN 150 (544)
Q Consensus 78 Ies~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~~~le~~~~el~~~~~~~ee 150 (544)
...+.++-.-+-=+++.+...++.+++.+..++++..++.+++...+.....+...+..++..|......|++
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E 90 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.15 E-value=59 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=7.0
Q ss_pred HHhhHHHhhhHHHHHHHHH
Q 045360 113 IGECDCELQLKESELNLLS 131 (544)
Q Consensus 113 I~e~~kEi~~~~~El~~l~ 131 (544)
|.+++..|..+..++..|+
T Consensus 42 I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.61 E-value=1.7e+02 Score=24.26 Aligned_cols=43 Identities=12% Similarity=0.337 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045360 200 ISSIQSMIEEYEEELKAKEKSYDEVKKSLRLCETKLECKKKEL 242 (544)
Q Consensus 200 l~~l~~~l~e~~~EL~~ke~el~~~~~~le~~~keLe~k~keL 242 (544)
+.-+..+++-+...|..-+..-.....+.+.+...+.+..+++
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666555555555555555554443
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.07 E-value=91 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.190 Sum_probs=5.8
Q ss_pred HHHHhhHHHhhhHHHH
Q 045360 111 KMIGECDCELQLKESE 126 (544)
Q Consensus 111 ~eI~e~~kEi~~~~~E 126 (544)
..|.+.+.+|..+.++
T Consensus 47 k~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 47 LELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.96 E-value=2e+02 Score=24.56 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 045360 124 ESELNLLSV 132 (544)
Q Consensus 124 ~~El~~l~~ 132 (544)
..++..++.
T Consensus 41 q~El~~lr~ 49 (111)
T 2v66_B 41 EDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.06 E-value=2.1e+02 Score=24.64 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHHHHH
Q 045360 203 IQSMIEEYEEELKAKEK 219 (544)
Q Consensus 203 l~~~l~e~~~EL~~ke~ 219 (544)
+..++..+..+|...+.
T Consensus 45 l~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 45 LKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.05 E-value=2.4e+02 Score=25.34 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045360 207 IEEYEEELKAKEKSYDEVKKSLRLCE 232 (544)
Q Consensus 207 l~e~~~EL~~ke~el~~~~~~le~~~ 232 (544)
+..+..|+.+.+.++..+..++..+.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 57
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.88 E-value=1.8e+02 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=6.5
Q ss_pred HHhhhHHHHHHHHHHhH
Q 045360 118 CELQLKESELNLLSVSL 134 (544)
Q Consensus 118 kEi~~~~~El~~l~~~l 134 (544)
+.+.....++..++..+
T Consensus 47 kKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 47 WKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33333333444443333
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.51 E-value=2.2e+02 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 045360 94 ECNFELACKQKELGLVQKMIGECDCELQ 121 (544)
Q Consensus 94 e~~~el~~le~ql~~~~~eI~e~~kEi~ 121 (544)
.+...|...++.|..++..|.+...++.
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~ 55 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAE 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333
No 59
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=34.11 E-value=1.7e+02 Score=22.96 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Q 045360 91 RIKECNFELACKQKELGLVQKMIGECDCELQLKESELNLLS 131 (544)
Q Consensus 91 ~iee~~~el~~le~ql~~~~~eI~e~~kEi~~~~~El~~l~ 131 (544)
.+..+++++.++..+++.++..+.-..+....++.++.++-
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 44445555555555666555666666666666666666663
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.49 E-value=2.7e+02 Score=25.06 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 045360 171 EIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEEL 214 (544)
Q Consensus 171 eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL 214 (544)
++..+.+-++.+..++..+.-++...+..+..+...-+.+...|
T Consensus 90 el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 90 VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444333333333333
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.28 E-value=2.1e+02 Score=23.07 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 045360 166 EKCCDEI 172 (544)
Q Consensus 166 E~~~~ei 172 (544)
+++.+++
T Consensus 22 E~L~qEi 28 (81)
T 3qh9_A 22 EELLQEL 28 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.17 E-value=2.1e+02 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 045360 73 QRAKEIESKESDLVLVEERIKEC 95 (544)
Q Consensus 73 ~lekEIes~ekeie~L~~~iee~ 95 (544)
.|...|..+..+-..+...+++.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~ 26 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNL 26 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444333333333333333
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.87 E-value=4.6e+02 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 286 DIGMKEREYNGLKKEVEDLSQELASKDK 313 (544)
Q Consensus 286 el~~keke~e~~~kelee~ekeL~~k~k 313 (544)
.+..++.-+...+..|..++.+|....+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~ 162 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIR 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555555544443
No 64
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.04 E-value=1e+02 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHhhHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045360 55 KSLEKQSNDVDMK----IMLLDQRAKEIESKESDLVLVEERIKEC 95 (544)
Q Consensus 55 ~~ie~~~~el~~k----~~~~e~lekEIes~ekeie~L~~~iee~ 95 (544)
..++.++.+||.+ +.-|+.|...+-..+.+++.|+.++.-+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665 3444444444444444444443333333
No 65
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.96 E-value=3.4e+02 Score=24.83 Aligned_cols=51 Identities=10% Similarity=0.303 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045360 269 IERELDSMKKKQKKYSDDIGMKEREYNGLKKEVEDLSQELASKDKLLKIFK 319 (544)
Q Consensus 269 ~ee~L~el~~~~e~~~kel~~keke~e~~~kelee~ekeL~~k~kq~e~~~ 319 (544)
+..+|.++...+..+...+......+-....+++.+.=+|-.+.+.....+
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334445554455555555555555555555555555555555555555544
No 66
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.42 E-value=2e+02 Score=22.14 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=8.6
Q ss_pred hhHHHHHHhhHHHHHH
Q 045360 52 LGKKSLEKQSNDVDMK 67 (544)
Q Consensus 52 s~~~~ie~~~~el~~k 67 (544)
++-.+|-.++.++-.+
T Consensus 9 ~il~eiRaQYE~ia~k 24 (77)
T 3trt_A 9 AAMRDVRQQYESVAAK 24 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555666666444
No 67
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.54 E-value=2.1e+02 Score=22.69 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=15.6
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 045360 193 IALKDSKISSIQSMIEEYEEELKAKEKSYDEVKKSLR 229 (544)
Q Consensus 193 Le~~e~~l~~l~~~l~e~~~EL~~ke~el~~~~~~le 229 (544)
|..++..+...+.-+++++..+.....+++.++..+.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333333
No 68
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=25.48 E-value=2.9e+02 Score=22.93 Aligned_cols=72 Identities=8% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhhchhhhHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 045360 21 ALRRSFDIAHEQANSVLKFTVQWKDLEKHFDLGKKSLEKQSNDVDMKIMLLDQRAKEIESKESDLVLVEERI 92 (544)
Q Consensus 21 ~~~~~~~~i~~~a~~i~~~~~~~~~~e~~~~s~~~~ie~~~~el~~k~~~~e~lekEIes~ekeie~L~~~i 92 (544)
.+.+--..|+.....|-..|=.|..-..+++|-.++|-+-++|.-....+++.+...+=-++.++..++.-|
T Consensus 35 ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 35 RVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 69
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=23.33 E-value=47 Score=30.05 Aligned_cols=40 Identities=8% Similarity=0.191 Sum_probs=23.4
Q ss_pred hhHHHHHHhhhhhHhhHHHHHHhhh----hCCChhhHHHHhhcCcCC
Q 045360 457 NLQLLLNQHLQKHDLIFSKIFNTIK----RARDPASLVLDAMSGFYP 499 (544)
Q Consensus 457 gL~~f~~~~~ke~~~lr~ei~~AL~----~a~DPaklVLdai~~f~~ 499 (544)
||..|+.+.+.+...+=.+|+.|+- ..|.|.. +++.+|-+
T Consensus 110 ~l~aYie~K~~EIk~~Ls~iS~ai~~~~~~tPs~s~---~~~~~f~~ 153 (158)
T 3k1h_A 110 EFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN---QSLKDLLS 153 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcch---hhHHHhhH
Confidence 9999999999999988889999987 4566665 66666654
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.26 E-value=2.4e+02 Score=20.88 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 045360 70 LLDQRAKEIESKESDLVLVEERIKECNFELAC 101 (544)
Q Consensus 70 ~~e~lekEIes~ekeie~L~~~iee~~~el~~ 101 (544)
-+..++.....+..+-..|...+..+..++..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 71
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.07 E-value=6.5e+02 Score=25.75 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhchhhhHHhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045360 40 TVQWKDLEKHFDLGKKSLEKQSNDV-DMKIMLLDQRAKEIESKESDLVLVEERIKECNFELACKQKELGLVQKMIGECDC 118 (544)
Q Consensus 40 ~~~~~~~e~~~~s~~~~ie~~~~el-~~k~~~~e~lekEIes~ekeie~L~~~iee~~~el~~le~ql~~~~~eI~e~~k 118 (544)
...|.++.+.+......+..--... +-.....+.+...|.....+.+ +.+-...++.+|...++-+...+.
T Consensus 347 ~p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e--------~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 347 IPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVME--------ARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp STTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHH--------hhhHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 119 ELQLKESELNLLSVSLDLKREELSLVQESVNNCQVDQKKMELLKNLLEKCCDEIELKEKKLGEVQ 183 (544)
Q Consensus 119 Ei~~~~~El~~l~~~le~~~~el~~~~~~~ee~~~k~~~l~~~~~~lE~~~~eie~ke~eLee~~ 183 (544)
..++-+..+-.|+.+++. .++.-..++++++.. +.....+++....+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 419 QAATANHTVMALMASLDA---EKAQGQKKVEELEGE----------ITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
No 72
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.62 E-value=4.4e+02 Score=23.65 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045360 221 YDEVKKSLRLCETKLECKKKELERTQSS 248 (544)
Q Consensus 221 l~~~~~~le~~~keLe~k~keLe~~~~e 248 (544)
.+....++..+...+..+..-|.+++.+
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.44 E-value=6.8e+02 Score=25.76 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=10.1
Q ss_pred hhhHHhhhhhHHHHHHhhHHHHH
Q 045360 44 KDLEKHFDLGKKSLEKQSNDVDM 66 (544)
Q Consensus 44 ~~~e~~~~s~~~~ie~~~~el~~ 66 (544)
|.+..-++...+.|..++.+|.+
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~ 74 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRD 74 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444444444444444433
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.32 E-value=4.1e+02 Score=22.80 Aligned_cols=55 Identities=7% Similarity=0.127 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHhHHH
Q 045360 166 EKCCDEIELKEKKLGEVQRLVEEREKQIALKDSKISSIQSMIEEYEEELKAKEKSYDE 223 (544)
Q Consensus 166 E~~~~eie~ke~eLee~~keie~~~eeLe~~e~~l~~l~~~l~e~~~EL~~ke~el~~ 223 (544)
..|..-...+..-|+..+.+. .+.+.+++.++..++..+...+++++.++.+...
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 334444444444443333332 2234444444444555555555555555444443
Done!