Query 045360
Match_columns 544
No_of_seqs 179 out of 195
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 22:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 37.8 81 0.0059 24.2 11.4 22 99-120 10-31 (107)
2 d1seta1 a.2.7.1 (A:1-110) Sery 21.5 1.1E+02 0.0081 23.3 6.9 23 34-56 28-50 (110)
3 d1qc7a_ a.118.14.1 (A:) FliG { 15.3 1.1E+02 0.0082 23.2 5.4 29 452-486 9-37 (101)
4 d1no1a_ a.179.1.1 (A:) Repliso 15.2 41 0.003 23.2 2.2 29 490-520 9-37 (67)
5 d1seta1 a.2.7.1 (A:1-110) Sery 13.2 2.6E+02 0.019 21.0 9.3 16 272-287 43-58 (110)
6 d1jnya3 c.37.1.8 (A:4-227) Elo 11.6 8 0.00058 34.3 -3.3 36 453-500 86-121 (224)
7 d1iyjb2 a.171.1.1 (B:2761-2897 10.9 25 0.0018 29.1 0.0 16 474-489 72-87 (137)
8 d1u6ea2 c.95.1.2 (A:175-317) K 10.5 25 0.0018 29.1 -0.2 48 446-503 30-77 (148)
9 d1ub7a2 c.95.1.2 (A:174-322) K 9.9 30 0.0022 28.4 0.1 49 445-503 28-76 (149)
10 d2clyb1 f.53.1.1 (B:4-123) ATP 9.3 1.6E+02 0.012 23.3 4.5 46 44-89 64-119 (120)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.80 E-value=81 Score=24.17 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHh
Q 045360 99 LACKQKELGLVQKMIGECDCEL 120 (544)
Q Consensus 99 l~~le~ql~~~~~eI~e~~kEi 120 (544)
+..++.+++.+...+.....++
T Consensus 10 ~q~lq~el~~~~~q~~~le~q~ 31 (107)
T d1fxka_ 10 FQQLQQQAQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=21.49 E-value=1.1e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=14.1
Q ss_pred hhhhhHhhchhhhHHhhhhhHHH
Q 045360 34 NSVLKFTVQWKDLEKHFDLGKKS 56 (544)
Q Consensus 34 ~~i~~~~~~~~~~e~~~~s~~~~ 56 (544)
..|+.+--+|+++...++.+.+.
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~ 50 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTE 50 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777776666655543
No 3
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=15.28 E-value=1.1e+02 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred ccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCCh
Q 045360 452 TSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDP 486 (544)
Q Consensus 452 ~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DP 486 (544)
+++.++++..+.+-- .+.++.||+.|+++
T Consensus 9 ~l~~~~l~~llr~i~------~~~l~~ALkga~~~ 37 (101)
T d1qc7a_ 9 KLDDRSIQLVLREVD------TRDLALALKGASDE 37 (101)
T ss_dssp GBCHHHHHHHHTSSC------HHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHHHCC------HHHHHHHHcCCCHH
Confidence 677777777775332 34788999998877
No 4
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=15.20 E-value=41 Score=23.18 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=20.6
Q ss_pred HHHhhcCcCCCCCCCcchhhhhhhhHHHHHH
Q 045360 490 VLDAMSGFYPPHSSERDVEFQVGLIRRSCIL 520 (544)
Q Consensus 490 VLdai~~f~~~~~~~~~~~~~~~~~r~~cil 520 (544)
+|-|+..|||..-..+| ..+....|..+|
T Consensus 9 ilkavsefypgrfqpdd--lkgtvkawhrvl 37 (67)
T d1no1a_ 9 ILKAVSEFYPGRFQPDD--LKGTVKAWHRVL 37 (67)
T ss_dssp HHHHHHHHSTTTCCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCccc--cchHHHHHHHHH
Confidence 68899999998766554 334456777776
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=13.20 E-value=2.6e+02 Score=20.98 Aligned_cols=16 Identities=6% Similarity=0.356 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhHhhHH
Q 045360 272 ELDSMKKKQKKYSDDI 287 (544)
Q Consensus 272 ~L~el~~~~e~~~kel 287 (544)
.+..+.+++..+.+++
T Consensus 43 ~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 43 RLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 6
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.59 E-value=8 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.2
Q ss_pred cchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCChhhHHHHhhcCcCCC
Q 045360 453 SKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDPASLVLDAMSGFYPP 500 (544)
Q Consensus 453 md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DPaklVLdai~~f~~~ 500 (544)
+|..|=-.|+. ++-.|+.. .|-|-||+||.+|++++
T Consensus 86 iDtPGH~df~~-----------~~~~g~~~-~D~allVVda~~G~~~~ 121 (224)
T d1jnya3 86 IDAPGHRDFVK-----------NMITGASQ-ADAAILVVSAKKGEYEA 121 (224)
T ss_dssp CCCSSSTTHHH-----------HHHHTSSC-CSEEEEEEECSTTHHHH
T ss_pred eeCCCcHHHHH-----------HHHHHHHh-hceEEEEEecccCcccc
Confidence 89999666666 45566655 49999999999998764
No 7
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.91 E-value=25 Score=29.13 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=0.0
Q ss_pred HHHHHhhhhCCChhhH
Q 045360 474 SKIFNTIKRARDPASL 489 (544)
Q Consensus 474 ~ei~~AL~~a~DPakl 489 (544)
.+|..||..||||+-|
T Consensus 72 ael~eale~a~Dp~~l 87 (137)
T d1iyjb2 72 AELYAAVQDASDPEHL 87 (137)
T ss_dssp ----------------
T ss_pred HHHHHHHHcCCCHHHH
Confidence 3899999999999754
No 8
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.52 E-value=25 Score=29.07 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred cccCCcccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCChhhHHHHhhcCcCCCCCC
Q 045360 446 EEQENLTSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDPASLVLDAMSGFYPPHSS 503 (544)
Q Consensus 446 ~~~~~l~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DPaklVLdai~~f~~~~~~ 503 (544)
+....++|||+...+|.+.+ +|.++..+-+.+.+-.+-|.-|+|....
T Consensus 30 ~~~~~~~m~G~~Vf~~a~~~----------v~~~i~~~L~~~gl~~~dId~~i~Hqa~ 77 (148)
T d1u6ea2 30 GPRPFVRLEGPAVFRWAAFK----------MGDVGRRAMDAAGVRPDQIDVFVPHQAN 77 (148)
T ss_dssp SCCCCEEECHHHHHHHHHHH----------HHHHHHHHHHHHTCCGGGCCEEEECCSC
T ss_pred CCCccEEeecHHHHHHHHHH----------HHHHHHHHHHHcCCCcccccEEEecccc
No 9
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Probab=9.91 E-value=30 Score=28.43 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccccCCcccchhhhHHHHHHhhhhhHhhHHHHHHhhhhCCChhhHHHHhhcCcCCCCCC
Q 045360 445 IEEQENLTSKGRNLQLLLNQHLQKHDLIFSKIFNTIKRARDPASLVLDAMSGFYPPHSS 503 (544)
Q Consensus 445 ~~~~~~l~md~~gL~~f~~~~~ke~~~lr~ei~~AL~~a~DPaklVLdai~~f~~~~~~ 503 (544)
.+...++.|||+.+.+|...+ +|.++..+-+-+.+=+|-|.-|+|....
T Consensus 28 ~~~~~~~~M~G~~vf~~a~~~----------vp~~i~~~L~~~g~~~~dId~~i~Hqa~ 76 (149)
T d1ub7a2 28 TSMKNRLYMNGREVFKFAVRV----------MNTATLEAIEKAGLTPEDIRLFVPHQAN 76 (149)
T ss_dssp CBCCSSCEECHHHHHHHHHHH----------HHHHHHHHHHHHTCCGGGCSEEEECCSC
T ss_pred cCcCCcEEEccHHHHHHHHHH----------HHHHHHHHHHhhccccccccEEEeeccc
No 10
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.34 E-value=1.6e+02 Score=23.29 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhHHhhhhhH---------HHHHHhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 045360 44 KDLEKHFDLGK---------KSLEKQSNDV-DMKIMLLDQRAKEIESKESDLVLVE 89 (544)
Q Consensus 44 ~~~e~~~~s~~---------~~ie~~~~el-~~k~~~~e~lekEIes~ekeie~L~ 89 (544)
.+||.+|++++ ..|+...++. .....-+......|..++++++.|+
T Consensus 64 D~fek~y~alkvp~p~d~~t~~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 64 DDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHTTCCCCCCCCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCCChhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!