Query 045361
Match_columns 148
No_of_seqs 120 out of 1097
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 1.4E-44 4.7E-49 278.0 13.2 127 22-148 2-134 (137)
2 2j01_L 50S ribosomal protein L 100.0 7.1E-41 2.4E-45 254.0 12.6 119 22-148 4-122 (125)
3 2zjq_5 50S ribosomal protein L 100.0 8.5E-41 2.9E-45 252.6 12.5 116 22-148 4-119 (122)
4 1dd3_A 50S ribosomal protein L 100.0 8.9E-42 3.1E-46 259.7 3.0 120 23-148 3-125 (128)
5 3sgf_J 50S ribosomal protein L 100.0 1.7E-41 5.9E-46 256.1 -1.0 115 22-148 4-118 (121)
6 1ctf_A Ribosomal protein L7/L1 100.0 5E-30 1.7E-34 179.3 6.0 69 79-148 3-71 (74)
7 1dd4_C 50S ribosomal protein L 99.2 2.5E-11 8.7E-16 75.6 5.0 34 22-55 2-35 (40)
8 1zav_U 50S ribosomal protein L 98.7 1.2E-08 4.3E-13 59.8 3.8 28 23-50 3-30 (30)
9 2cp9_A EF-TS, EF-TSMT, elongat 88.6 0.33 1.1E-05 32.4 2.9 27 97-123 10-36 (64)
10 1aip_C EF-TS, elongation facto 75.9 2.2 7.6E-05 34.0 3.5 30 96-125 3-32 (196)
11 1xb2_B EF-TS, elongation facto 73.0 2.6 8.9E-05 35.2 3.4 37 97-139 5-41 (291)
12 2jml_A DNA binding domain/tran 59.8 7.8 0.00027 25.3 3.1 28 95-122 51-78 (81)
13 2p63_A Cell division control p 50.3 18 0.00063 23.4 3.5 26 24-49 28-53 (56)
14 1mul_A NS2, HU-2, DNA binding 47.2 9.7 0.00033 25.5 2.0 35 95-129 2-36 (90)
15 1q08_A Zn(II)-responsive regul 45.4 23 0.00079 23.4 3.7 25 95-120 4-28 (99)
16 1b8z_A Protein (histonelike pr 45.4 10 0.00035 25.3 1.9 35 95-129 2-36 (90)
17 3rhi_A DNA-binding protein HU; 44.7 8.7 0.0003 26.1 1.4 35 95-129 5-39 (93)
18 3c4i_A DNA-binding protein HU 43.5 11 0.00039 25.7 1.9 35 95-129 2-36 (99)
19 2o97_B NS1, HU-1, DNA-binding 43.4 11 0.00036 25.3 1.7 35 95-129 2-36 (90)
20 1p71_A DNA-binding protein HU; 43.2 12 0.0004 25.3 1.9 35 95-129 2-36 (94)
21 1owf_A IHF-alpha, integration 39.5 14 0.00049 25.2 1.9 35 95-129 4-38 (99)
22 1l0i_A Acyl carrier protein; a 37.7 32 0.0011 21.2 3.3 22 32-53 34-55 (78)
23 1f80_D Acyl carrier protein; t 37.0 32 0.0011 21.4 3.2 23 31-53 37-59 (81)
24 1owf_B IHF-beta, integration H 36.5 18 0.00062 24.3 2.0 35 95-129 2-37 (94)
25 3iz5_t 60S acidic ribosomal pr 36.4 37 0.0013 24.4 3.8 18 20-37 40-57 (110)
26 3gzm_A Acyl carrier protein; h 35.5 36 0.0012 21.4 3.3 22 32-53 36-57 (81)
27 2lol_A ACP, acyl carrier prote 35.4 37 0.0013 21.1 3.3 23 31-53 36-58 (81)
28 1x3o_A Acyl carrier protein; s 34.2 41 0.0014 20.7 3.3 22 32-53 36-57 (80)
29 2amw_A Hypothetical protein NE 33.7 36 0.0012 21.6 3.1 21 33-53 37-57 (83)
30 2qnw_A Acyl carrier protein; m 33.5 41 0.0014 21.2 3.3 23 31-53 37-59 (82)
31 2jq4_A AGR_C_4658P, hypothetic 33.4 39 0.0013 23.1 3.4 21 33-53 55-75 (105)
32 2l4b_A Acyl carrier protein; i 33.1 39 0.0014 21.6 3.2 22 32-53 42-63 (88)
33 2ehs_A ACP, acyl carrier prote 32.9 44 0.0015 20.3 3.3 22 32-53 32-53 (77)
34 2kwl_A ACP, acyl carrier prote 32.8 41 0.0014 21.2 3.2 23 31-53 39-61 (84)
35 1r8e_A Multidrug-efflux transp 32.6 42 0.0014 25.8 3.8 27 94-121 50-76 (278)
36 1exe_A Transcription factor 1; 30.9 11 0.00038 25.9 0.1 34 96-129 3-36 (99)
37 3izc_v 60S acidic ribosomal pr 30.8 12 0.0004 26.9 0.3 30 17-49 32-61 (106)
38 1ctf_A Ribosomal protein L7/L1 29.6 57 0.0019 22.1 3.6 22 22-43 21-42 (74)
39 2cgq_A Acyl carrier protein AC 29.4 47 0.0016 23.4 3.3 22 32-53 56-77 (113)
40 3iz5_v 60S acidic ribosomal pr 29.4 13 0.00044 27.1 0.3 20 17-36 33-52 (113)
41 2kw2_A Specialized acyl carrie 29.2 48 0.0016 22.2 3.2 22 32-53 34-55 (101)
42 2l9f_A CALE8, meacp; transfera 28.4 47 0.0016 23.6 3.1 22 32-53 45-66 (102)
43 2dnw_A Acyl carrier protein; A 27.9 53 0.0018 21.7 3.2 21 33-53 47-67 (99)
44 3gpv_A Transcriptional regulat 27.8 62 0.0021 23.5 3.8 25 95-120 61-85 (148)
45 2cnr_A FAS, ACP, acyl carrier 27.6 42 0.0014 20.8 2.5 22 32-53 38-59 (82)
46 2np2_A HBB; protein-DNA comple 27.5 23 0.00079 24.6 1.4 35 95-129 10-49 (108)
47 1or5_A Acyl carrier protein; A 27.0 40 0.0014 21.2 2.4 23 31-53 36-58 (83)
48 1in0_A YAJQ protein, HI1034; a 26.9 32 0.0011 26.7 2.1 59 85-148 47-121 (163)
49 3ce7_A Specific mitochodrial a 26.6 58 0.002 22.4 3.3 21 33-53 55-75 (107)
50 4dxe_H ACP, acyl carrier prote 26.3 57 0.002 22.2 3.2 20 34-53 59-78 (101)
51 3qp1_A CVIR transcriptional re 26.1 72 0.0025 23.3 4.0 48 9-56 2-53 (182)
52 1v5i_B POIA1, IA-1=serine prot 25.6 48 0.0016 21.4 2.6 25 124-148 8-32 (76)
53 3gp4_A Transcriptional regulat 25.4 68 0.0023 23.2 3.6 25 95-120 47-71 (142)
54 2zhg_A Redox-sensitive transcr 25.0 75 0.0026 23.2 3.9 26 95-121 55-80 (154)
55 2kjs_A Putative acyl carrier p 24.7 53 0.0018 21.8 2.7 23 31-53 32-54 (87)
56 1vku_A Acyl carrier protein; T 23.6 71 0.0024 21.7 3.3 22 32-53 47-68 (100)
57 2lki_A Putative uncharacterize 23.4 67 0.0023 22.0 3.2 20 34-53 60-79 (105)
58 1dv5_A APO-DCP, APO-D-alanyl c 23.1 31 0.001 22.1 1.2 22 32-53 35-56 (80)
59 1nq4_A Oxytetracycline polyket 23.1 57 0.0019 21.6 2.6 22 32-53 38-59 (95)
60 2dg6_A Putative transcriptiona 22.9 66 0.0023 25.3 3.4 27 95-121 45-71 (222)
61 3ejb_A Acyl carrier protein; p 22.8 47 0.0016 22.2 2.2 33 21-53 25-74 (97)
62 2vz4_A Tipal, HTH-type transcr 22.7 1.1E+02 0.0039 20.6 4.2 25 95-120 46-70 (108)
63 3a1y_A 50S ribosomal protein P 22.4 53 0.0018 20.8 2.2 15 134-148 19-33 (58)
64 2rnn_A E3 SUMO-protein ligase 22.1 1.6E+02 0.0056 21.3 5.1 25 21-45 28-52 (114)
65 2kci_A Putative acyl carrier p 21.9 51 0.0018 22.1 2.2 22 32-53 33-54 (87)
66 2j01_L 50S ribosomal protein L 20.4 1.1E+02 0.0038 22.5 3.9 27 22-49 73-99 (125)
67 1q06_A Transcriptional regulat 20.0 89 0.003 22.2 3.3 25 95-120 45-69 (135)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.4e-44 Score=277.98 Aligned_cols=127 Identities=31% Similarity=0.554 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhc--cCCCCCCCCC---CCCcccccccceeEEEecCCCchh
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV--GVAPGAPGAE---APASVEEEKTEFDVVIDEVPSNAR 96 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~--ga~~~a~~~~---~~~~~~~EKt~fdV~L~~~~~~kK 96 (148)
|+++|+|+|++|||+|++|||+.|+++|||++++++|++++ +++|+++++. +.++..+|||+|||+|++||+++|
T Consensus 2 kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~K 81 (137)
T 2ftc_E 2 KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDK 81 (137)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccch
Confidence 89999999999999999999999999999998764443321 1111111111 112223589999999999998899
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 97 IAVIKAVRTL-TNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 97 i~vIK~vR~i-t~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
|+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus 82 I~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~V 134 (137)
T 2ftc_E 82 VKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTV 134 (137)
T ss_pred hHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999997 999999999999999999999999999999999999999986
No 2
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00 E-value=7.1e-41 Score=253.97 Aligned_cols=119 Identities=50% Similarity=0.664 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK 101 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 101 (148)
++++|+|+|++|||+|++||++.|+++|||++++ |++++ ++|+++ +.+ + +.+|||+|||+|++|+ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaa--pva~~-~~~~~a-~~a-~-a~eEKteFdV~L~~~~-~~KI~VIK 76 (125)
T 2j01_L 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAA--PVAVA-AAPAAG-AAA-A-PAEEKTEFDVILKEAG-AKKLEVIK 76 (125)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccc--ccccc-ccCccc-ccc-c-cccccceeEEEEeeCC-cchHHHHH
Confidence 4689999999999999999999999999999864 43322 112221 111 1 2359999999999997 79999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|
T Consensus 77 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~V 122 (125)
T 2j01_L 77 ELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVV 122 (125)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999 99999999999999999999999986
No 3
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00 E-value=8.5e-41 Score=252.65 Aligned_cols=116 Identities=44% Similarity=0.623 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK 101 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 101 (148)
++++|+|+|++|||+|++||++.|+++|||++++ |++++ +|+++ + + +.+|||+|||+|++|+ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaa--p~a~a--~~~a~---a-~-a~eEKteFdV~L~~~~-~~KI~VIK 73 (122)
T 2zjq_5 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAV--AVSGG--GAGAA---S-P-AAEEKTEFDVVLIDAG-ASKINVIK 73 (122)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCcc--ccccc--CCCcc---c-c-cccccceeEEEEecCC-cchHHHHH
Confidence 4689999999999999999999999999999864 43322 12211 1 1 2249999999999997 79999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|
T Consensus 74 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~V 119 (122)
T 2zjq_5 74 EIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARV 119 (122)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999 99999999999999999999999986
No 4
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00 E-value=8.9e-42 Score=259.73 Aligned_cols=120 Identities=52% Similarity=0.716 Sum_probs=101.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHHH
Q 045361 23 IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKA 102 (148)
Q Consensus 23 v~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK~ 102 (148)
+++|+|+|++||++|++||++.|+++|||++.+ |+++++ +|+++++ + +++.+|||+|||+|++|+ ++||+|||+
T Consensus 3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaa--pva~~~-~~~~~~a-~-~~a~eEKteFdV~L~~~~-~~KI~VIK~ 76 (128)
T 1dd3_A 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA--PVAVAA-APVAGAA-A-GAAQEEKTEFDVVLKSFG-QNKIQVIKV 76 (128)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHH--HHHHHH-HHHHHHH-H-HHHHHTTSSEEEEEEECT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcc--hhhccc-ccccccc-c-cccccccceeeEEEecCC-cchHHHHHH
Confidence 689999999999999999999999999999864 332221 1101100 1 012359999999999997 799999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCh---hhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 103 VRTLTNLALKEAKDLIEGLPK---KFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 103 vR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
||++|||||||||+|||++|+ +||+|+||+|||+||++|+++||+|
T Consensus 77 VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~V 125 (128)
T 1dd3_A 77 VREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEV 125 (128)
T ss_dssp HHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred HHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999999999999 9999999999999999999999986
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00 E-value=1.7e-41 Score=256.09 Aligned_cols=115 Identities=49% Similarity=0.719 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK 101 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 101 (148)
.+++|+|+|++||++|++||++.|+++|||++++ |+++ |+++ + ++.+|||+|||+|++++ ++||+|||
T Consensus 4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa--~~a~----~a~~----a-~a~eEKteFdV~L~~~g-~~Ki~VIK 71 (121)
T 3sgf_J 4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAA--AVAV----AAGP----V-EAAEEKTEFDVILKAAG-ANKVAVIK 71 (121)
T ss_dssp CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccc--cccc----cccc----c-ccccccceeEEEEecCc-hhhHHHHH
Confidence 4689999999999999999999999999999864 3211 1111 1 12349999999999997 69999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus 72 ~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~V 118 (121)
T 3sgf_J 72 AVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEV 118 (121)
T ss_dssp -----------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999987
No 6
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.96 E-value=5e-30 Score=179.25 Aligned_cols=69 Identities=65% Similarity=0.864 Sum_probs=63.8
Q ss_pred ccccceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 79 EEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 79 ~EKt~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
+|||+|||+|++|+ ++||+|||+||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~V 71 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEV 71 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence 38999999999997 7999999999999999999999999999999999999999999999999999986
No 7
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.18 E-value=2.5e-11 Score=75.61 Aligned_cols=34 Identities=44% Similarity=0.683 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCccc
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAA 55 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~ 55 (148)
++++|+|+|++||++|++||++.||++|||++++
T Consensus 2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa 35 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA 35 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCccc
Confidence 4689999999999999999999999999998753
No 8
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.70 E-value=1.2e-08 Score=59.85 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 045361 23 IEKLATEISSLTLQEVCNLVDYLQDKLG 50 (148)
Q Consensus 23 v~~ivd~i~~LtllE~~eLv~~le~~fg 50 (148)
+++|+|+|++||++|++|||+.||++||
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999998
No 9
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=88.55 E-value=0.33 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCh
Q 045361 97 IAVIKAVRTLTNLALKEAKDLIEGLPK 123 (148)
Q Consensus 97 i~vIK~vR~it~LgLkEAK~lVe~~P~ 123 (148)
...||+||+.||.|++++|+.++.+-.
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~G 36 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGG 36 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 478999999999999999998776543
No 10
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=75.88 E-value=2.2 Score=33.99 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhcChhh
Q 045361 96 RIAVIKAVRTLTNLALKEAKDLIEGLPKKF 125 (148)
Q Consensus 96 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~I 125 (148)
..+.||++|+.||.|++++|+.++.+-.-+
T Consensus 3 ~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ 32 (196)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDE 32 (196)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCH
Confidence 367899999999999999999887665433
No 11
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=72.99 E-value=2.6 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHH
Q 045361 97 IAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKK 139 (148)
Q Consensus 97 i~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~ 139 (148)
.+.||++|+.||.|++++|+.++..- -.-|.|.++-.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~------GD~ekAie~LR 41 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCG------GDLKQAESWLH 41 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC------CCHHHHHHHHH
Confidence 47899999999999999999987654 34455655443
No 12
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=59.78 E-value=7.8 Score=25.28 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLP 122 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P 122 (148)
..+..|+.+|.-.|++|+|.+.++...|
T Consensus 51 ~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 51 EAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 5677778887677999999999998766
No 13
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=50.32 E-value=18 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 045361 24 EKLATEISSLTLQEVCNLVDYLQDKL 49 (148)
Q Consensus 24 ~~ivd~i~~LtllE~~eLv~~le~~f 49 (148)
+-|..-+++|+.-|++||+..|++.+
T Consensus 28 nLiF~Lvs~m~RseLSDl~TlikDNL 53 (56)
T 2p63_A 28 NLLFRLVANMDRSELSDLGTLIKDNL 53 (56)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 55778889999999999999999876
No 14
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=47.21 E-value=9.7 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1mul_A 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999888776644
No 15
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=45.43 E-value=23 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhh
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEG 120 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~ 120 (148)
.++..|+.+|. +|++|.|-|.+++.
T Consensus 4 ~rL~~I~~lr~-lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQ-LGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 36777888886 59999999999974
No 16
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=45.42 E-value=10 Score=25.30 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1b8z_A 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999887776544
No 17
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=44.72 E-value=8.7 Score=26.05 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+.+||.-++++..|+.+-.+|.+.+
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L 39 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNTL 39 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999887776544
No 18
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=43.51 E-value=11 Score=25.73 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+.++|.-++++.+|+.+-.+|.+.+
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999888776644
No 19
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=43.36 E-value=11 Score=25.33 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 2o97_B 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESL 36 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999887776543
No 20
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=43.21 E-value=12 Score=25.32 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999887776543
No 21
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=39.47 E-value=14 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
.|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999888776644
No 22
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=37.71 E-value=32 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++||++-
T Consensus 34 G~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4566788999999999999964
No 23
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=36.99 E-value=32 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.=+.+.+|+..|+++|||.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 37 LGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCC
T ss_pred cCCcHHHHHHHHHHHHHHhCCcc
Confidence 44667889999999999999964
No 24
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=36.52 E-value=18 Score=24.27 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHH-cCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVRTL-TNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR~i-t~LgLkEAK~lVe~~P~~IKe~v 129 (148)
+|-.+|+.|.+. ++|.-++++..|+.+-.+|.+.+
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L 37 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTL 37 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 366899999998 69999999999999887776543
No 25
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=36.41 E-value=37 Score=24.38 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhcCCHHH
Q 045361 20 PEKIEKLATEISSLTLQE 37 (148)
Q Consensus 20 ~~kv~~ivd~i~~LtllE 37 (148)
+.++..++..|..-++-|
T Consensus 40 ~~~~~lfakaL~gknI~e 57 (110)
T 3iz5_t 40 AYWPALFAKLLEKRSVDD 57 (110)
T ss_dssp SHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCCHHH
Confidence 334455555566666543
No 26
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=35.48 E-value=36 Score=21.44 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++|||.-
T Consensus 36 g~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 36 GADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCc
Confidence 5666788999999999999964
No 27
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=35.43 E-value=37 Score=21.13 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.-+.+.+|+..|+++||+.-
T Consensus 36 lG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 36 LKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCCC
Confidence 45677888999999999999964
No 28
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=34.17 E-value=41 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++||+.-
T Consensus 36 G~DSl~~~~l~~~le~~fgi~i 57 (80)
T 1x3o_A 36 GADSLDTVELIMGLEDEFGLEI 57 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCC
T ss_pred CccHHHHHHHHHHHHHHHCCCc
Confidence 3556788899999999999864
No 29
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=33.69 E-value=36 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 045361 33 LTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 33 LtllE~~eLv~~le~~fgv~~ 53 (148)
+.-+.+.+|+-.||++|||.-
T Consensus 37 ~DSl~~~elv~~lE~~fgi~i 57 (83)
T 2amw_A 37 LDSMAVVNVITALEEYFDFSV 57 (83)
T ss_dssp TTHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHHhCCee
Confidence 366788999999999999954
No 30
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=33.51 E-value=41 Score=21.17 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.=+.+.+|+..||++|||.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (82)
T 2qnw_A 37 LDADSLDSVELVMAFEEKFGVSI 59 (82)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCcC
Confidence 34666788999999999999964
No 31
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=33.36 E-value=39 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 045361 33 LTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 33 LtllE~~eLv~~le~~fgv~~ 53 (148)
+.=+.+.+|+-.||++|||.-
T Consensus 55 lDSL~~veLv~~lE~~fgI~i 75 (105)
T 2jq4_A 55 LSSFASVQLMLGIEEAFDIEF 75 (105)
T ss_dssp CCHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCc
Confidence 345788999999999999853
No 32
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=33.10 E-value=39 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+-+|+..||++|||.-
T Consensus 42 glDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 42 NLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHHHHHCCCc
Confidence 4556788899999999999964
No 33
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=32.93 E-value=44 Score=20.29 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++||++-
T Consensus 32 G~DSl~~~~l~~~le~~~gi~i 53 (77)
T 2ehs_A 32 GADSLDVVELIMAFEEEFGIEI 53 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCcc
Confidence 4566788999999999999964
No 34
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=32.76 E-value=41 Score=21.18 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=18.8
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.=+.+-+|+..||++|||.-
T Consensus 39 lG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 39 LNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCT
T ss_pred cCCCHHHHHHHHHHHHHHHCCCc
Confidence 34666788999999999999964
No 35
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=32.61 E-value=42 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045361 94 NARIAVIKAVRTLTNLALKEAKDLIEGL 121 (148)
Q Consensus 94 ~kKi~vIK~vR~it~LgLkEAK~lVe~~ 121 (148)
-.++..|+.+|+. |++|+|.|.+++..
T Consensus 50 ~~~l~~i~~l~~~-g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 50 LIHLDLIKSLKYI-GTPLEEMKKAQDLE 76 (278)
T ss_dssp GGHHHHHHHHHHT-TCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHhC
Confidence 3678888888764 99999999999865
No 36
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=30.86 E-value=11 Score=25.87 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 96 RIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 96 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 1exe_A 3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETV 36 (99)
T ss_dssp TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999888776654
No 37
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=30.81 E-value=12 Score=26.90 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 045361 17 VEAPEKIEKLATEISSLTLQEVCNLVDYLQDKL 49 (148)
Q Consensus 17 ~~~~~kv~~ivd~i~~LtllE~~eLv~~le~~f 49 (148)
...+.++..++..|..-++- ||+..-.++|
T Consensus 32 eVe~~~~~~f~~aL~gkdI~---eLIa~g~~kl 61 (106)
T 3izc_v 32 EIEDEKVSSVLSALEGKSVD---ELITEGNEKL 61 (106)
T ss_dssp CCCHHHHHHHHHHHTTCCHH---HHHHSCC---
T ss_pred CcCHHHHHHHHHHcCCCCHH---HHHHhhhHHh
Confidence 34455667777777776654 4444334444
No 38
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=29.56 E-value=57 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 045361 22 KIEKLATEISSLTLQEVCNLVD 43 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~ 43 (148)
+|...|..|-+|.|.|+.+||+
T Consensus 21 ~vIK~VR~itgLgLkEAK~lVe 42 (74)
T 1ctf_A 21 AVIKAVRGATGLGLKEAKDLVE 42 (74)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5678899999999999999998
No 39
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=29.39 E-value=47 Score=23.40 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+-.||++|||.-
T Consensus 56 GlDSLd~veLi~~LEe~FgI~I 77 (113)
T 2cgq_A 56 GFDSLKLFQLITELEDEFDIAI 77 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCc
Confidence 3456889999999999999864
No 40
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=29.36 E-value=13 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=12.8
Q ss_pred CCChHHHHHHHHHHhcCCHH
Q 045361 17 VEAPEKIEKLATEISSLTLQ 36 (148)
Q Consensus 17 ~~~~~kv~~ivd~i~~Ltll 36 (148)
...+.++..++..|..-++-
T Consensus 33 eVe~~~~~lf~~aL~gk~I~ 52 (113)
T 3iz5_v 33 EIDNEKMELMLSQVKGKDIT 52 (113)
T ss_dssp CCCHHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHhcCCCHH
Confidence 34455667777777777654
No 41
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=29.16 E-value=48 Score=22.22 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+-.||++|||.-
T Consensus 34 GlDSL~~veLi~~lE~~fgi~i 55 (101)
T 2kw2_A 34 GIDSLDFLDIAFAIDKAFGIKL 55 (101)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCcc
Confidence 5667888999999999999964
No 42
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=28.38 E-value=47 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+-||+-.++++||+.-
T Consensus 45 glDSLd~VeLVm~lE~~fGi~i 66 (102)
T 2l9f_A 45 HMSSITVGQLVNEAARAMGLSA 66 (102)
T ss_dssp CCCHHHHHHHHHHHHHHHTCST
T ss_pred CCcHHHHHHHHHHHHHHhCCCC
Confidence 3566889999999999999963
No 43
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.86 E-value=53 Score=21.69 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 045361 33 LTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 33 LtllE~~eLv~~le~~fgv~~ 53 (148)
+.=+.+.+|+..||++|||.-
T Consensus 47 ~DSL~~vel~~~le~~fgi~i 67 (99)
T 2dnw_A 47 LDSLDQVEIIMAMEDEFGFEI 67 (99)
T ss_dssp CCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCC
Confidence 345788999999999999963
No 44
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.84 E-value=62 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhh
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEG 120 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~ 120 (148)
.++..|+.+|+ +|++|+|.|.+++.
T Consensus 61 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKN-TGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 46666666654 69999999999984
No 45
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=27.56 E-value=42 Score=20.80 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++||+.-
T Consensus 38 G~DSl~~~~l~~~le~~fgi~i 59 (82)
T 2cnr_A 38 DVDSLSMVEVVVAAEERFDVKI 59 (82)
T ss_dssp CCCHHHHHHHHHHHHGGGTBCC
T ss_pred CCChHHHHHHHHHHHHHhCCCC
Confidence 4566788899999999999864
No 46
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=27.53 E-value=23 Score=24.56 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=29.8
Q ss_pred hhHHHHHHHH-----HHcCCCHHHHHHHHhhcChhhhcCC
Q 045361 95 ARIAVIKAVR-----TLTNLALKEAKDLIEGLPKKFKEGV 129 (148)
Q Consensus 95 kKi~vIK~vR-----~it~LgLkEAK~lVe~~P~~IKe~v 129 (148)
.|-.+|+.|. +.++|.-++++..|+.+-.+|.+.+
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L 49 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNL 49 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5778999998 7899999999999999887776543
No 47
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=27.04 E-value=40 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.-+.+.+|+..|+++|||.-
T Consensus 36 lG~DSL~~vel~~~le~~fgi~i 58 (83)
T 1or5_A 36 LGYDSLALLETAAVLQQRYGIAL 58 (83)
T ss_dssp HSCCHHHHHHHHHHHHTTSCCCC
T ss_pred hCCCHHHHHHHHHHHHHHHCCcc
Confidence 36788889999999999999864
No 48
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=26.89 E-value=32 Score=26.69 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=41.2
Q ss_pred eEEEecCCCchhHHHHHH-HHH-Hc--CCCHHHHHHHHh--h----------cChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 85 DVVIDEVPSNARIAVIKA-VRT-LT--NLALKEAKDLIE--G----------LPKKFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 85 dV~L~~~~~~kKi~vIK~-vR~-it--~LgLkEAK~lVe--~----------~P~~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
.++|..-+ +.++.-+.. ++. +. |+.|+ .++ . .-..|++|++.+.|.+|.+.++..+-+|
T Consensus 47 ~i~l~a~~-d~kl~qv~DiL~~kl~KRgid~k----~ld~~~~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKV 121 (163)
T 1in0_A 47 TIKITTES-DFQLEQLIEILIGSCIKRGIEHS----SLDIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKV 121 (163)
T ss_dssp EEEEEESC-HHHHHHHHHHHHHHHHHTTCCGG----GEECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSE
T ss_pred EEEEEeCC-HHHHHHHHHHHHHHHHHcCCCch----hcccCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcc
Confidence 57887754 678877664 464 22 66664 222 1 1246899999999999999999988764
No 49
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=26.62 E-value=58 Score=22.37 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 045361 33 LTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 33 LtllE~~eLv~~le~~fgv~~ 53 (148)
+.-+.+.+|+-.||++|||.-
T Consensus 55 lDSL~~veli~~lE~~fgi~i 75 (107)
T 3ce7_A 55 WDCLDTVEFVLDVEEIFDVTV 75 (107)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCC
Confidence 456889999999999999953
No 50
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=26.30 E-value=57 Score=22.20 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHhCCCc
Q 045361 34 TLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 34 tllE~~eLv~~le~~fgv~~ 53 (148)
.-+.+.+|+..||++|||.-
T Consensus 59 DSL~~veLi~~lE~~fgi~i 78 (101)
T 4dxe_H 59 DSLDIAELVMELEDEFGTEI 78 (101)
T ss_dssp CHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHHHCCCC
Confidence 34778899999999999964
No 51
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=26.09 E-value=72 Score=23.31 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=35.4
Q ss_pred cccCCCCcCCChH---HHHHHHHHHhcC-CHHHHHHHHHHHHHHhCCCcccc
Q 045361 9 SHLRPLCAVEAPE---KIEKLATEISSL-TLQEVCNLVDYLQDKLGVSAAAF 56 (148)
Q Consensus 9 ~~~~~~~~~~~~~---kv~~ivd~i~~L-tllE~~eLv~~le~~fgv~~~~~ 56 (148)
+|.+|...+-|.. .+.++++.|... |.-++.+++..+-..||.+...+
T Consensus 2 ~~~~~~~~~~s~~~~~~l~~~~~~l~~a~s~~~l~~~l~~~~~~~Gf~~~~y 53 (182)
T 3qp1_A 2 SHMRPLPAGLTASQQWTLLEWIHMAGHIETENELKAFLDQVLSQAPSERLLL 53 (182)
T ss_dssp --CCCCCSSCCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTSSCSEEEE
T ss_pred CCCCcCCcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 6888888887774 445666666655 78889999999999999987643
No 52
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=25.59 E-value=48 Score=21.36 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=16.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361 124 KFKEGVSKDDAEAAKKQLEEAGAKF 148 (148)
Q Consensus 124 ~IKe~vsKeeAE~ik~kle~aGA~V 148 (148)
++|++++.++.+..+..+...|++|
T Consensus 8 ~lk~~~~~~~~~~~~~~~~~~gg~i 32 (76)
T 1v5i_B 8 IFKNDVSEDKIRETKDEVIAEGGTI 32 (76)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHHHHhhCCce
Confidence 4566677666666666666666653
No 53
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.38 E-value=68 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhh
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEG 120 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~ 120 (148)
.++..|+.+|+ +|++|.|.|.+++.
T Consensus 47 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRR-AGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 56777777764 69999999999974
No 54
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=24.96 E-value=75 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGL 121 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~ 121 (148)
.++..|+.+|+ +|++|.|.+.+++..
T Consensus 55 ~~l~~I~~lr~-~G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 55 RYVAIIKIAQR-IGIPLATIGEAFGVL 80 (154)
T ss_dssp HHHHHHHHHHH-HTCCHHHHHHHHCC-
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 46667777764 599999999999864
No 55
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=24.74 E-value=53 Score=21.81 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCc
Q 045361 31 SSLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 31 ~~LtllE~~eLv~~le~~fgv~~ 53 (148)
..+.-+-..+|+..|+++|||.-
T Consensus 32 lg~DSL~~veli~~ie~~fgi~i 54 (87)
T 2kjs_A 32 DAWDSLSHMNLIVSLEVHYKIKF 54 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCChHHHHHHHHHHHHHhCcee
Confidence 34556777899999999999964
No 56
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=23.59 E-value=71 Score=21.66 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..||++|||.-
T Consensus 47 GlDSL~~veL~~~LE~~fgi~i 68 (100)
T 1vku_A 47 GFDSIDVIDLVMFFEDEFALRI 68 (100)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHHHHHCCCC
Confidence 4667888999999999999964
No 57
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=23.44 E-value=67 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHhCCCc
Q 045361 34 TLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 34 tllE~~eLv~~le~~fgv~~ 53 (148)
.=+.+-+|+-.||++|||.-
T Consensus 60 DSL~~veLi~~lE~~FgI~I 79 (105)
T 2lki_A 60 DSMAVVNVITALEEYFDFSV 79 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHhCCCc
Confidence 55778899999999999853
No 58
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=23.09 E-value=31 Score=22.05 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+-.||++|||.=
T Consensus 35 ~lDSl~~velv~~lE~~fgi~i 56 (80)
T 1dv5_A 35 LLDSMGTVQLLLELQSQFGVDA 56 (80)
T ss_dssp SCCSHHHHHHHHHHTTTSCCCC
T ss_pred CcChHHHHHHHHHHHHHhCCcC
Confidence 3666778899999999999853
No 59
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=23.08 E-value=57 Score=21.60 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+.+.+|+..|+++|||.-
T Consensus 38 G~DSL~~vel~~~le~~fgi~i 59 (95)
T 1nq4_A 38 GYDSLALLNTVGRIERDYGVQL 59 (95)
T ss_dssp TCCSHHHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHCCcc
Confidence 4777888999999999999863
No 60
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=22.85 E-value=66 Score=25.28 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEGL 121 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~~ 121 (148)
.++..|+.+|+..|++|++.|++++..
T Consensus 45 ~~L~~I~~lr~~~G~sL~eIk~~l~~~ 71 (222)
T 2dg6_A 45 RRLRLVRALIQVGKVPVATAREVLGHV 71 (222)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 566777777766699999999999853
No 61
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=22.84 E-value=47 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHHhCCCc
Q 045361 21 EKIEKLATEISSLT-----------------LQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 21 ~kv~~ivd~i~~Lt-----------------llE~~eLv~~le~~fgv~~ 53 (148)
+++.+|+.+..++. -+.+.+|+..||++|||.-
T Consensus 25 ~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i 74 (97)
T 3ejb_A 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEI 74 (97)
T ss_dssp HHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 57777777765542 2567899999999999964
No 62
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.68 E-value=1.1e+02 Score=20.58 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhh
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEG 120 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~ 120 (148)
..+..|+.+|+ .|++|.+.+.+++.
T Consensus 46 ~~l~~I~~lr~-~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 46 DRLQQILFYRE-LGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHhC
Confidence 45666666654 69999999999975
No 63
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=22.43 E-value=53 Score=20.80 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCcC
Q 045361 134 AEAAKKQLEEAGAKF 148 (148)
Q Consensus 134 AE~ik~kle~aGA~V 148 (148)
+++|++.|+++|..|
T Consensus 19 ~~~I~~il~aaGvev 33 (58)
T 3a1y_A 19 EENLKAVLQAAGVEP 33 (58)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCc
Confidence 688999999999875
No 64
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=22.11 E-value=1.6e+02 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 045361 21 EKIEKLATEISSLTLQEVCNLVDYL 45 (148)
Q Consensus 21 ~kv~~ivd~i~~LtllE~~eLv~~l 45 (148)
+.+...+..|+.|++-|+.++|+..
T Consensus 28 ~e~~~~~~~l~kLtVaELK~~cr~~ 52 (114)
T 2rnn_A 28 NEVEETITLMELLKVSELKDICRSV 52 (114)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHc
Confidence 6899999999999999998877643
No 65
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=21.93 E-value=51 Score=22.08 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHHHhCCCc
Q 045361 32 SLTLQEVCNLVDYLQDKLGVSA 53 (148)
Q Consensus 32 ~LtllE~~eLv~~le~~fgv~~ 53 (148)
.+.-+..-+|+-.||++|||.=
T Consensus 33 g~DSL~~veli~~lE~eF~I~i 54 (87)
T 2kci_A 33 AWDSLSHMNLIVSLEVHYKIKF 54 (87)
T ss_dssp CCCSTHHHHHHHHHHHHHTCCC
T ss_pred CCChHHHHHHHHHHHHHHCCcc
Confidence 3344567789999999999954
No 66
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=20.36 E-value=1.1e+02 Score=22.53 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 045361 22 KIEKLATEISSLTLQEVCNLVDYLQDKL 49 (148)
Q Consensus 22 kv~~ivd~i~~LtllE~~eLv~~le~~f 49 (148)
+|...|..|-+|.|.|+.+||+-. ..+
T Consensus 73 ~VIK~VR~itgLgLkEAK~lVe~a-~~i 99 (125)
T 2j01_L 73 EVIKELRAITGLGLKEAKDLAEKG-GPV 99 (125)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence 566889999999999999999987 544
No 67
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.02 E-value=89 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhh
Q 045361 95 ARIAVIKAVRTLTNLALKEAKDLIEG 120 (148)
Q Consensus 95 kKi~vIK~vR~it~LgLkEAK~lVe~ 120 (148)
.++..|+.+|+ .|++|.|.|.+++.
T Consensus 45 ~~l~~I~~lr~-~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 45 NELTLLRQARQ-VGFNLEESGELVNL 69 (135)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHh
Confidence 45666666654 59999999999974
Done!