BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045363
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 303/631 (48%), Positives = 418/631 (66%), Gaps = 16/631 (2%)
Query: 76 TTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTG 135
TTR+WDFLG + +RS + +SNI+VG+LDTGIW ESPSF+D+GF PPP KWKG C T
Sbjct: 1 TTRSWDFLGFPLTVPRRS-QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETS 59
Query: 136 ANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQ 195
NF RCN+K+IGAR Y++ + P D P DT+GHGTHT+STAAG V A+LYG+
Sbjct: 60 NNF-RCNRKIIGARSYHIGRPISPG-DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGL 117
Query: 196 GTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPS-RSYFDDSI 254
GTARGGVP ARIA YKVCW+ GC+D DILAA+DDAI DGVD+IS+S+GG + R YF D+I
Sbjct: 118 GTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 255 SIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
+IGSFHA+++GILT+ SAGN GP T +++PW+++VAAS++DRKFVT V++GNG
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQD 374
G+SINTF YPL +G N T C +++ +KGKIV C S
Sbjct: 238 GVSINTFD--NQYYPLVSGRDIPN-TGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH 294
Query: 375 YTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVV 434
L GA ++ D A + + + + P + +YI S ++P A I+K+ +
Sbjct: 295 EFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI 354
Query: 435 NTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNIL 494
++AP + SFSSRGP + T +++KPDI+ PG++ILAA+ +A V G+ RR FNI+
Sbjct: 355 LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RRNTLFNII 411
Query: 495 SGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKTKSD-DAELASGSGQINPT 553
SGTSM+CPH YVK+++P WSPAAIKSALMTTA+PM + + AE A GSG +NP
Sbjct: 412 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPL 471
Query: 554 KAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDGLNYPSMH 613
KAV PGL+YD N S Y +FLC +GYN+ A+ R+ G C++ + D LNYPS
Sbjct: 472 KAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA--CTSGNTGRVWD-LNYPSFG 528
Query: 614 FHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVL 673
+ + + F RT+T+V S Y+A + +P+GL+++V+P VL+F+ +SFT+
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588
Query: 674 VKGSMQSGASILSALLEWSDTKHSVKSPILV 704
V+GS++ ++SA L WSD H V+SPI +
Sbjct: 589 VRGSIK--GFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 355 bits (910), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 244/659 (37%), Positives = 348/659 (52%), Gaps = 49/659 (7%)
Query: 76 TTRTWDFLGM--SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCV 133
TT T DFL + S L S Q ++IV +LD+GIW ES SF D G P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQ-DVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICK 59
Query: 134 TGANF--TRCNKKVIGARYYN---LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGA 188
G F + CN+K+IGA Y+N L N N S DTDGHGTH +S AG KG
Sbjct: 60 PGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGV 119
Query: 189 SLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
S +G A GTARG P AR+A+YK ++ G D++AA D A+ DGVD+ISIS G
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIP 179
Query: 249 YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLG 308
++D+ISI SF AM KG+L + SAGN GP G++ N +PWI+ VA+ DR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 309 NGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGN-VGACDYGTL--SMKKVKGKIV 365
NG++ G S ++P R + V IY + C L ++ + IV
Sbjct: 240 NGLKIRGWS---------LFPARAFVRDSPV---IYNKTLSDCSSEELLSQVENPENTIV 287
Query: 366 YCLGSG---SQDYTIDRLQGAGTIVAVDAPTDIAIATLI-AGTFVVPEVGIKIDQYINST 421
C +G Q I R + I + P AT G V + G ++ Y+ ++
Sbjct: 288 ICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNS 347
Query: 422 KNPQAVI-YKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVT 480
P A I ++ ++T AP +A+ S+RGP + L I KPDI APG+ ILAAY T
Sbjct: 348 VTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFAT 407
Query: 481 GLPGDRRIVPFNIL-SGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKT--- 536
+ + + IL SGTSMA PH +K+ HP+WSP+AI+SA+MTTA P+
Sbjct: 408 SIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467
Query: 537 ---KSDDAELAS----GSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGR 589
SD+ + A+ G+G ++P +A+ PGL+YD Y LC + +
Sbjct: 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS 527
Query: 590 KKKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAI---FRRTVTNVGFAKSLYKATVHS 646
NCS P+ LNYPS ++ E + + + F+RTVTNVG + YKA + +
Sbjct: 528 SASHNCS--NPSA---DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKA 582
Query: 647 PKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDT--KHSVKSPIL 703
PK +++VSP++L F + +S+T+ ++ G S + W + HSV+SPI+
Sbjct: 583 PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/438 (23%), Positives = 177/438 (40%), Gaps = 77/438 (17%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 84 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 134
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 135 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 194
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 195 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQA 254
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K KI
Sbjct: 255 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK---DKIANAKK 311
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + T A
Sbjct: 312 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNAT-- 363
Query: 430 KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGDRRI 488
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 364 -PKVLPTASDTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVAN------------- 406
Query: 489 VPFNILSGTSMACPHXXXXXXYVK----SFHPDWSPAA----IKSALMTTATPMKTKSDD 540
+ LSGTSM+ P ++ + +PD +P+ K LM++AT + + +
Sbjct: 407 NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 466
Query: 541 AELA---SGSGQINPTKA 555
A + G+G ++ KA
Sbjct: 467 AYFSPRQQGAGAVDAKKA 484
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
I FSSRGP N LKP++ APG I+AA + S+ G P + + GT+MA
Sbjct: 309 ITDFSSRGP--TADNRLKPEVVAPGNWIIAARASGTSM-GQPINDY---YTAAPGTAMAT 362
Query: 502 PHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557
PH + HP W+P +K+AL+ TA +K + A++A G+G++N KA +
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVK-PDEIADIAYGAGRVNAYKAAY 417
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM- 221
+ +P D +GHGTH +S AAG GA+ + G +G P A++ KV G +
Sbjct: 171 KTTPYDDNGHGTHVASIAAGT---GAA----SNGKYKGMAPGAKLVGIKVLNGQGSGSIS 223
Query: 222 DILAAFDDAIGD----GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGP 277
DI+ D A+ + G+ +I++S+G S DS+S +A G++ +AGN GP
Sbjct: 224 DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGP 283
Query: 278 YQGTVENVAPWIMTVAASSIDR 299
+ TV + A + ++D+
Sbjct: 284 NKYTVGSPAAASKVITVGAVDK 305
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 175/446 (39%), Gaps = 93/446 (20%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G P A++ + +V
Sbjct: 75 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAXPEAQLLLXRVE 125
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DAI G +I+ S G + +Y + D +A KG+
Sbjct: 126 IVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIV 185
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ V++ +
Sbjct: 186 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQD 245
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNV-----GACDYGTLSMKKVKGKI 364
+S N F P KA Y N + ++ G + G D+ K K
Sbjct: 246 KEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGA 305
Query: 365 VYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNP 424
V L +QD P ++ F+ + G+ + NP
Sbjct: 306 VGVLIYDNQDKGF--------------PIELPNVDQXPAAFISRKDGLLL------KDNP 345
Query: 425 QAVIY---KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVT 480
Q I +V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 346 QKTITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK--- 399
Query: 481 GLPGDRRIVPFNILSGTSMACPHXXXXXXYVK----SFHPDWSPAA----IKSALMTTAT 532
+ LSGTS + P ++ + +PD +P+ K L ++AT
Sbjct: 400 ----------YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSAT 449
Query: 533 PMKTKSDDAELA---SGSGQINPTKA 555
+ + + A + G+G ++ KA
Sbjct: 450 ALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
A FSS GP+ D+ APG+ I + LPG + + LSGTSMA P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICST---------LPGGK----YGALSGTSMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L TAT +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKL 248
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+G PS S
Sbjct: 102 IEWAIANNMDVINMSLGSPSGS 123
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALD-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I V+ LPG++ + SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSI---------VSTLPGNK----YGAKSGTAMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 102 IEWAIANNMDVINMSLGGPSGS 123
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I V+ LPG++ + SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSI---------VSTLPGNK----YGAKSGTAMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 102 IEWAIANNMDVINMSLGGPSGS 123
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+W+ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALD-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 102 IEWAIANNMDVINMSLGGPSGS 123
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 102 IEWAIANNMDVINMSLGGPSGS 123
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKL 257
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALD-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKL 257
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PS+ + KV G I+
Sbjct: 60 DDNSHGTHVAGTVAALN-NSIGVLGVA--------PSSALYAVKVLGDAGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A P A + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PCASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
A FSS GP+ D+ APG+ I + LPG + + LSGT+MA P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICST---------LPGGK----YGALSGTAMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L TAT +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKL 248
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+G PS S
Sbjct: 102 IEWAIANNMDVINMSLGSPSGS 123
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAKSGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A P A + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PCASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYSGTXMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 52/194 (26%)
Query: 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYY 151
R+S + I+G++DTG V+ P ++ G G N T
Sbjct: 35 RASAKGAGQIIGVIDTGCQVDHPDLAERIIG------------GVNLTT----------- 71
Query: 152 NLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMY 210
D D+ + D +GHGTH + T AA ET G+ + G+A P A + +
Sbjct: 72 ------DYGGDETNFSDNNGHGTHVAGTVAAAET--GSGVVGVA--------PKADLFII 115
Query: 211 KVCWSGGCADMDILA-AFDDAI------GDGVDLISISIGGPSRS-YFDDSISIGSFHAM 262
K G +M +A A A+ G+ + +I++S+GGP+ S D++ +A+
Sbjct: 116 KALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAV 171
Query: 263 KKGILTACSAGNDG 276
+ C+AGN+G
Sbjct: 172 SNNVSVVCAAGNEG 185
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYSGTXMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A P A + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PCASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGT MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTXMASP 216
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 60 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 101
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 102 IEWAIANNMDVINMSLGGPSGS 123
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAKSGTXMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 52/194 (26%)
Query: 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYY 151
R+S + I+G++DTG V+ P ++ + G N T
Sbjct: 17 RASAKGAGQIIGVIDTGCQVDHPDLAER------------IIGGVNLTT----------- 53
Query: 152 NLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMY 210
D D+ + D +GHGTH + T AA ET G+ + G+A P A + +
Sbjct: 54 ------DYGGDETNFSDNNGHGTHVAGTVAAAET--GSGVVGVA--------PKADLFII 97
Query: 211 KVCWSGGCADMDILA-AFDDAI------GDGVDLISISIGGPSRS-YFDDSISIGSFHAM 262
K G +M +A A A+ G+ + +I++S+GGP+ S D++ +A+
Sbjct: 98 KALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAV 153
Query: 263 KKGILTACSAGNDG 276
+ C+AGN+G
Sbjct: 154 SNNVSVVCAAGNEG 167
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + SGT MA P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWST---------LPGNK----YGAKSGTXMASP 213
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 245
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + GT PSA + KV + G I+
Sbjct: 57 DNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIING 98
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 99 IEWAIANNMDVINMSLGGPSGS 120
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTXMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTXMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + +D+I++S+GGPS S
Sbjct: 111 IEWAIANNMDVINMSLGGPSGS 132
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 163 QKSPVDTDGHGTHTSSTA-AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM 221
S D +GHGTH + TA A A +YG+A P A + YKV G
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYS 113
Query: 222 DILAAF-----DDAIGDGVD-LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGND 275
D +AA D A G +IS+S+G + + IS +A KG+L +AGN
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSL---ISSAVNYAYSKGVLIVAAAGNS 170
Query: 276 GPYQGTV 282
G QGT+
Sbjct: 171 GYSQGTI 177
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 163 QKSPVDTDGHGTHTSSTA-AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM 221
S D +GHGTH + TA A A +YG+A P A + YKV G
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYS 113
Query: 222 DILAAF-----DDAIGDGVD-LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGND 275
D +AA D A G +IS+S+G + + IS +A KG+L +AGN
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSL---ISSAVNYAYSKGVLIVAAAGNS 170
Query: 276 GPYQGTV 282
G QGT+
Sbjct: 171 GYSQGTI 177
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 436 TSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV--PFNI 493
T++ ASFS+ G + D+AAPG DIL+ G RR V ++
Sbjct: 228 TTSRGIRASFSNYG--------VDVDLAAPGQDILSTVDS--------GTRRPVSDAYSF 271
Query: 494 LSGTSMACPHXXXXXXYV----KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549
++GTSMA PH V S + + +PA +K L++T +P + D A GSG
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLD---RALGSGI 328
Query: 550 INPTKAVH 557
++ AV+
Sbjct: 329 VDAEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 436 TSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV--PFNI 493
T++ ASFS+ G + D+AAPG DIL+ G RR V ++
Sbjct: 228 TTSRGIRASFSNYG--------VDVDLAAPGQDILSTVDS--------GTRRPVSDAYSF 271
Query: 494 LSGTSMACPHXXXXXXYV----KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549
++GTSMA PH V S + + +PA +K L++T +P + D A GSG
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLD---RALGSGI 328
Query: 550 INPTKAVH 557
++ AV+
Sbjct: 329 VDAEAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 436 TSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV--PFNI 493
T++ ASFS+ G + D+AAPG DIL+ G RR V ++
Sbjct: 228 TTSRGIRASFSNYG--------VDVDLAAPGQDILSTVDS--------GTRRPVSDAYSF 271
Query: 494 LSGTSMACPHXXXXXXYV----KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549
++GTSMA PH V S + + +PA +K L++T +P + D A GSG
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLD---RALGSGI 328
Query: 550 INPTKAVH 557
++ AV+
Sbjct: 329 VDAEAAVN 336
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS GP+ D+ APG+ I + LPG++ + +GTS A P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQST---------LPGNK----YGAYNGTSXASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S HP+W+ ++S+L T T +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAA 226
D + HGTH + T A + G+A PSA + KV + G I+
Sbjct: 60 DNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGADGSGQYSWIING 110
Query: 227 FDDAIGDGVDLISISIGGPSRS 248
+ AI + D+I+ S+GGPS S
Sbjct: 111 IEWAIANNXDVINXSLGGPSGS 132
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 53/219 (24%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ VG++DTGI + S D K V GA+F
Sbjct: 13 ADKVQAQGYKG-ANVKVGIIDTGI---ASSHTDL-----------KVVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A P+
Sbjct: 51 VSGESYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PN 86
Query: 205 ARIAMYKVCWSGGCADMD-ILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMK 263
+ KV S G I++ + A +G+D+I++S+GGPS S ++ A
Sbjct: 87 VSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPSGS---TALKQAVDKAYA 143
Query: 264 KGILTACSAGNDGP--YQGTVENVAPWIMTVAASSIDRK 300
GI+ +AGN G Q T+ A + +A ++D
Sbjct: 144 SGIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSN 182
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG+ + + Y P + + L+GTSMA P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTY---------PSNT----YTSLNGTSMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
H + S +P S + +++ L +TAT +
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNL 256
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPMKTKSDDAELASGSGQINPTKA 555
I++ L TAT + + + GSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTN-----LYGSGLVNAEAA 267
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPMKT 536
I++ L TAT + +
Sbjct: 238 VQIRNHLKNTATSLGS 253
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A PSA + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PSAELYAVKVLGADGRGAIS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDG 276
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG 155
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPM 534
I++ L TAT +
Sbjct: 238 VQIRNHLKNTATSL 251
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A P+A + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PNAELYAVKVLGASGSGSVS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQG 280
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--AG 157
Query: 281 TVENVAPWIMTVAASSIDRK 300
++ A + +A + D+
Sbjct: 158 SISYPARYANAMAVGATDQN 177
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPM 534
I++ L TAT +
Sbjct: 238 VQIRNHLKNTATSL 251
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A P+A + KV + G
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PNAELYAVKVLGASGGGSNS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQG 280
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--AG 157
Query: 281 TVENVAPWIMTVAASSIDRK 300
++ A + +A + D+
Sbjct: 158 SISYPARYANAMAVGATDQN 177
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPM 534
I++ L TAT +
Sbjct: 238 VQIRNHLKNTATSL 251
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A PSA + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PSAELYAVKVLGASGSGSVS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQG 280
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--AG 157
Query: 281 TVENVAPWIMTVAASSIDRK 300
++ A + +A + D+
Sbjct: 158 SISYPARYANAMAVGATDQN 177
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPM 534
I++ L TAT +
Sbjct: 238 VQIRNHLKNTATGL 251
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A PSA + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PSAELYAVKVLGASGSGSVS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQG 280
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--AG 157
Query: 281 TVENVAPWIMTVAASSIDRK 300
++ A + +A + D+
Sbjct: 158 SISYPARYANAMAVGATDQN 177
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 52/194 (26%)
Query: 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYY 151
R+S + I+G++DTG V+ P ++ + G N T
Sbjct: 35 RASAKGAGQIIGVIDTGXQVDHPDLAER------------IIGGVNLTT----------- 71
Query: 152 NLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMY 210
D D+ + D +GHGTH + T AA ET G+ + G+A P A + +
Sbjct: 72 ------DYGGDETNFSDNNGHGTHVAGTVAAAET--GSGVVGVA--------PKADLFII 115
Query: 211 KVCWSGGCADMDILA-AFDDAI------GDGVDLISISIGGPSRS-YFDDSISIGSFHAM 262
K G +M +A A A+ G+ + +I++S+GGP+ S D++ +A+
Sbjct: 116 KALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAV 171
Query: 263 KKGILTACSAGNDG 276
+ +AGN+G
Sbjct: 172 SNNVSVVXAAGNEG 185
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 52/194 (26%)
Query: 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYY 151
R+S + I+G++DTG V+ P ++ + G N T
Sbjct: 35 RASAKGAGQIIGVIDTGCQVDHPDLAER------------IIGGVNLTT----------- 71
Query: 152 NLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMY 210
D D+ + D +GHGTH + T AA ET G+ + G+A P A + +
Sbjct: 72 ------DYGGDETNFSDNNGHGTHVAGTVAAAET--GSGVVGVA--------PKADLFII 115
Query: 211 KVCWSGGCADMDILA-AFDDAI------GDGVDLISISIGGPSRS-YFDDSISIGSFHAM 262
K G +M +A A A+ G+ + +I++S+GGP+ S D++ +A+
Sbjct: 116 KALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAV 171
Query: 263 KKGILTACSAGNDG 276
+ +AGN+G
Sbjct: 172 SNNVSVVXAAGNEG 185
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPMKTKSDDAELASGSGQINPTKA 555
I++ L TAT + + + GSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTN-----LYGSGLVNAEAA 267
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + D+ APG+ I + LPG + +GTSMA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQST---------LPGGT----YGAYNGTSMATP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP W+ A ++ L +TAT
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTAT 255
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
SN+ V ++D+GI P N +G GA+F + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLNVRG--------------GASF--------------VPSET 55
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+P D S HGTH + T A + G+A PSA + KV S G
Sbjct: 56 NPYQDGSS------HGTHVAGTIAALN-NSIGVLGVA--------PSASLYAVKVLDSTG 100
Query: 218 CADMD-ILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
I+ + AI + +D+I++S+GGP+ S ++ A+ GI+ A +AGN+G
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPM 534
I++ L TAT +
Sbjct: 238 VQIRNHLKNTATSL 251
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD 222
+ S D +GHGTH + T A + G+A P+A + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PNAELYAVKVLGASGSGSVS 103
Query: 223 ILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQG 280
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--AG 157
Query: 281 TVENVAPWIMTVAASSIDRK 300
++ A + +A + D+
Sbjct: 158 SISYPARYANAMAVGATDQN 177
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPMKT 536
I++ L TAT + +
Sbjct: 238 VQIRNHLKNTATSLGS 253
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 19/141 (13%)
Query: 163 QKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM 221
+ S D +GHGTH + T AA + G + G+A PSA + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALDNSIG--VLGVA--------PSAELYAVKVLGASGSGAI 102
Query: 222 DILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQ 279
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG--A 156
Query: 280 GTVENVAPWIMTVAASSIDRK 300
G++ A + +A + D+
Sbjct: 157 GSISYPARYANAMAVGATDQN 177
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG+++ + Y PG + L+GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 521 AAIKSALMTTATPMKT 536
I++ L TAT + +
Sbjct: 238 VQIRNHLKNTATSLGS 253
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 163 QKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM 221
+ S D +GHGTH + T AA + G + G+A PSA + KV + G +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALDNSIG--VLGVA--------PSAELYAVKVLGASGSGAI 102
Query: 222 DILA-AFDDAIGDGVDLISISIGGPSRSY-FDDSISIGSFHAMKKGILTACSAGNDGPYQ 279
+A + A +G+ + ++S+G PS S + +++ A +G+L ++GN+G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNEG--A 156
Query: 280 GTVENVAPWIMTVAASSIDRK 300
G+++ A + +A + D+
Sbjct: 157 GSIDYPARYANAMAVGATDQN 177
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 406 VVPEVGIKIDQY--INSTKNPQAVIYKTRVVNTSTA------PFIASFSSRGPQKITLNI 457
+V VG + Y INSTK + K +V +++A PF+ +S IT+
Sbjct: 278 LVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANS----DITVPS 333
Query: 458 LKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPD 517
+ D A GL + A + +V+ G++ +N GTSMA PH V S+HP+
Sbjct: 334 VSVD-RATGLALKAKLGQSTTVSN-QGNQDYEYYN---GTSMATPHVSGVATLVWSYHPE 388
Query: 518 WSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKA 555
S + +++AL TA + D + +G G IN A
Sbjct: 389 CSASQVRAALNATADDLSVAGRDNQ--TGYGMINAVAA 424
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 80/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 107 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 148
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 149 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 198
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A DA D ++IS+S+GGP+ SY D I A
Sbjct: 199 GIEQAILGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYDMI----IQAY 252
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 253 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 23/62 (37%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 327
Query: 502 PH 503
PH
Sbjct: 328 PH 329
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + D+ APG+ I + LPG + +GT MA P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQST---------LPGGT----YGAYNGTXMATP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP W+ A ++ L +TAT
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTAT 255
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
SN+ V ++D+GI P N +G GA+F + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLNVRG--------------GASF--------------VPSET 55
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+P D S HGTH + T A + G+A PSA + KV S G
Sbjct: 56 NPYQDGSS------HGTHVAGTIAALN-NSIGVLGVA--------PSASLYAVKVLDSTG 100
Query: 218 CADMD-ILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
I+ + AI + +D+I++S+GGP+ S ++ A+ GI+ A +AGN+G
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + D+ APG+ I + LPG + +GT MA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQST---------LPGGT----YGAYNGTCMATP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP W+ A ++ L +TAT
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTAT 255
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
SN+ V ++D+GI P N +G GA+F + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLNVRG--------------GASF--------------VPSET 55
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+P D S HGTH + T A + G++ PSA + KV S G
Sbjct: 56 NPYQDGSS------HGTHVAGTIAALN-NSIGVLGVS--------PSASLYAVKVLDSTG 100
Query: 218 CADMD-ILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
I+ + AI + +D+I++S+GGP+ S ++ A+ GI+ A +AGN+G
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+A FSSRGP K +KPD+ APG IL+A S LA + + + + GTSMA
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYMGGTSMAT 258
Query: 502 P 502
P
Sbjct: 259 P 259
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 74/206 (35%), Gaps = 40/206 (19%)
Query: 80 WDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFT 139
W + S+ + I + +LDTG+ P ++ N
Sbjct: 8 WGIKAIYNNSNLTSTSGGAGINIAVLDTGVNTNHPDLSN------------------NVE 49
Query: 140 RCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTAR 199
+C +G + DN S D GHGTH + +A G+ +YG+A
Sbjct: 50 QCKDFTVGTNF--TDN---------SCTDRQGHGTHVAGSALANGGTGSGVYGVA----- 93
Query: 200 GGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISI---GGPSRSYFDDSISI 256
P A + YKV G D +A GD ++ + S I+
Sbjct: 94 ---PEADLWAYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITN 150
Query: 257 GSFHAMKKGILTACSAGNDGPYQGTV 282
+A KG+L +AGN GP G++
Sbjct: 151 AVDYAYDKGVLIIAAAGNSGPKPGSI 176
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 442 IASFSSRGPQKITLN--ILKPD--IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497
+A FSSRG ++ + I K D I+APG + + + + T +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGGYAT-------------ISGT 248
Query: 498 SMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
SMA PH + + P S ++ L T A+
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRAS 283
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 56/206 (27%)
Query: 72 RKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGK 131
+ +T WD +K S + ++DTG+ P + GK
Sbjct: 16 QNTYTDYAWDV-----------TKGSSGQEIAVIDTGVDYTHPDLD------------GK 52
Query: 132 CVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLY 191
+ G +F +DN DP +D + HGTH + AA ET +
Sbjct: 53 VIKGYDF--------------VDNDYDP-------MDLNNHGTHVAGIAAAETNNATGIA 91
Query: 192 GIAQGTARGGVPSARIAMYKVCWSGGCADM-DILAAFDDAIGDGVDLISISIGGPSRSYF 250
G+A P+ RI + G + DI A A G ++I++S+G +
Sbjct: 92 GMA--------PNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHT-- 141
Query: 251 DDSISIGSFHAMKKGILTACSAGNDG 276
++ +A KG + +AGN+G
Sbjct: 142 -TTLENAVNYAWNKGSVVVAAAGNNG 166
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 107 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 148
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 149 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 198
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 199 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 252
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 253 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 23/62 (37%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 327
Query: 502 PH 503
PH
Sbjct: 328 PH 329
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 168 DTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM---YKVCWSG 216
D +GHGTH T A G +Y + ARG + IA+ +
Sbjct: 146 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 205
Query: 217 GCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAMKKGILTACSA 272
G AD D I+A D D ++IS+S+GGP+ SY D I A GI+ ++
Sbjct: 206 GVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAAS 259
Query: 273 GNDGPYQGTVENVAPWIMTVAA 294
GN+G + P ++ V A
Sbjct: 260 GNEGAPSPSYPAAYPEVIAVGA 281
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 23/62 (37%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 324
Query: 502 PH 503
PH
Sbjct: 325 PH 326
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 107 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 148
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 149 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 198
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 199 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 252
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 253 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 23/62 (37%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 327
Query: 502 PH 503
PH
Sbjct: 328 PH 329
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 29 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 70
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 71 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 120
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 121 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 174
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 175 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 249
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 27 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 68
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 69 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 172
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 173 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 247
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 27 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 68
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 69 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 172
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 173 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTXMAT 247
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 27 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 68
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 69 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 172
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 173 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTCMAT 247
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 38 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 79
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 80 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 129
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 130 GIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 183
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 184 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 258
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 38 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 79
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 80 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 129
Query: 210 ---YKVCWSGGCADMD---ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHAM 262
+ G AD D I+A D D ++IS+S+GGP+ SY D I A
Sbjct: 130 GIAQAILGPDGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 183
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 184 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 23/74 (31%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 258
Query: 502 PHXXXXXXYVKSFH 515
PH +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 78/213 (36%), Gaps = 51/213 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P AN C + G L +
Sbjct: 107 SVIQVAVLDTGVDYDHPDL------------------AANIAWCVSTLRGKVSTKLRDCA 148
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG--------ETVKGASLYGIAQGTARGGVPSARIAM 209
D N GHGTH T A G +Y + ARG + IA+
Sbjct: 149 DQN----------GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI 198
Query: 210 ---YKVCWSGGCADMD----ILAAFDDAIGDGVDLISISIGGPS-RSYFDDSISIGSFHA 261
+ G AD D I DDA ++IS+S+GGP+ SY D I A
Sbjct: 199 GIEQAILGPDGVADKDGDGIIAGDPDDA---AAEVISMSLGGPADDSYLYDMI----IQA 251
Query: 262 MKKGILTACSAGNDGPYQGTVENVAPWIMTVAA 294
GI+ ++GN+G + P ++ V A
Sbjct: 252 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 23/62 (37%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R +P+++APG+DIL+ Y P D + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDDS----YETLMGTAMAT 327
Query: 502 PH 503
PH
Sbjct: 328 PH 329
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 13 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 51 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 86
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 131
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 13 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 51 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 86
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 131
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 13 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 51 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 86
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 131
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTAT 255
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 14 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 51
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 52 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 87
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 88 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 132
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 225
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTAT 255
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 14 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 51
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 52 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 87
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 88 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 132
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTSMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 13 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 51 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 86
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 131
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSP 520
DI APG I +++ S T N +SGTSMA PH +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 521 AAIKSALMTTATPMK 535
A + + L T AT K
Sbjct: 247 AQVTNLLKTRATADK 261
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477
+A FSSRGP K +KPD+ APG IL+A S LA
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLA 235
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFSS G + ++ APG + + Y P + + L+GT MA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY---------PTNT----YATLNGTXMASP 224
Query: 503 HXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
H + S HP+ S + +++ L +TAT
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKV 145
++K+Q + K +N+ V +LDTGI P N V GA+F
Sbjct: 13 ADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN--------------VVGGASF------- 50
Query: 146 IGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST-AAGETVKGASLYGIAQGTARGGVPS 204
+ YN D +GHGTH + T AA + G + G+A PS
Sbjct: 51 VAGEAYNTDG--------------NGHGTHVAGTVAALDNTTG--VLGVA--------PS 86
Query: 205 ARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS 248
+ KV SG + I++ + A +G+D+I++S+GG S S
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGS 131
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAF 227
D GHGT S G+T L G+A P+ + MY+V S + + A
Sbjct: 173 DRKGHGTMVS----GQTSANGKLIGVA--------PNNKFTMYRVFGSKKTELLWVSKAI 220
Query: 228 DDAIGDGVDLISISIGG------PSRSYF--DDSISIGSF-----HAMKKGILTACSAGN 274
A DG +I+IS+G F D+ + + +A KK + +AGN
Sbjct: 221 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 280
Query: 275 DG 276
DG
Sbjct: 281 DG 282
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAF 227
D GHGT S G+T L G+A P+ + MY+V S + + A
Sbjct: 197 DRKGHGTMVS----GQTSANGKLIGVA--------PNNKFTMYRVFGSKKTELLWVSKAI 244
Query: 228 DDAIGDGVDLISISIGG------PSRSYF--DDSISIGSF-----HAMKKGILTACSAGN 274
A DG +I+IS+G F D+ + + +A KK + +AGN
Sbjct: 245 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 304
Query: 275 DG 276
DG
Sbjct: 305 DG 306
>pdb|3NO7|A Chain A, Crystal Structure Of The Centromere-Binding Protein Parb
From Plasmid Pcxc100
pdb|3NO7|B Chain B, Crystal Structure Of The Centromere-Binding Protein Parb
From Plasmid Pcxc100
Length = 80
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 5 PEEAGISAVKEHHSLLTTAIGDEKLARE------SKIRSYGKSFNGFVARLLPHEAKRLX 58
PE + S VK +T +G+E+ AR + ++ ++F+GF+A L E +RL
Sbjct: 2 PEASARSEVK-----MTVTVGEERRARLRTAYTLTHLQEGHRTFSGFIAAALDAEVQRLE 56
Query: 59 XXXXXXXXFENTRRKLHTTR 78
FEN R + R
Sbjct: 57 QRYNEGRRFENAERGVTRGR 76
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 461 DIAAPGLDILAAY--SELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDW 518
D+ APG I +A+ S+ A+ T L+GTSMA PH +P
Sbjct: 196 DLFAPGASIPSAWYTSDTATQT-------------LNGTSMATPHVAGVAALYLEQNPSA 242
Query: 519 SPAAIKSALMTTAT 532
+PA++ SA++ AT
Sbjct: 243 TPASVASAILNGAT 256
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP------FNILS 495
+A FSSR + APG+ IL+ S+ G G VP ++
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSI-GYEGHNENVPATNGGTYDYYQ 378
Query: 496 GTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTA 531
GTSMA PH + P+ P I+ L TA
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 46/192 (23%)
Query: 431 TRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY-------SELASVTGLP 483
VVN ++AS + GP T+ PDI+ P L + AY +E A LP
Sbjct: 358 NEVVNKYGVVWVASAGNHGPALCTVGT-PPDISQPSLIGVGAYVSPQXXEAEYAMREKLP 416
Query: 484 GDRRI-------------------------VP------FNILSGTSMACPHXXXXXXYV- 511
G+ VP + +GTS A PH +
Sbjct: 417 GNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQFTXSKSQLXNGTSXAAPHVAGAVALLI 476
Query: 512 ---KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSS 568
K + ++SP +IK A+ TAT + A G G +N KA + + +
Sbjct: 477 SGLKQQNIEYSPYSIKRAISVTATKLGYVD---PFAQGHGLLNVEKAFEHLTEHRQSKDN 533
Query: 569 YTRFLCKEGYNS 580
RF + G N+
Sbjct: 534 XLRFSVRVGNNA 545
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,724,984
Number of Sequences: 62578
Number of extensions: 846441
Number of successful extensions: 2061
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 214
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)