Query 045363
Match_columns 712
No_of_seqs 390 out of 2798
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.5E-51 3.2E-56 437.7 30.2 294 72-532 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.2E-50 4.8E-55 445.0 22.6 300 78-562 294-618 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 2.2E-48 4.8E-53 430.0 29.5 400 95-548 1-455 (455)
4 cd05562 Peptidases_S53_like Pe 100.0 1.3E-48 2.9E-53 405.5 24.0 270 94-557 1-274 (275)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 2.7E-48 5.8E-53 400.4 25.5 243 91-535 1-254 (255)
6 cd07497 Peptidases_S8_14 Pepti 100.0 5E-48 1.1E-52 407.2 25.5 286 97-531 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.5E-47 3.3E-52 414.2 28.9 308 89-557 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 2.4E-46 5.2E-51 398.8 28.1 284 88-559 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 6.6E-46 1.4E-50 384.4 26.4 247 90-537 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 2.1E-45 4.5E-50 388.9 30.5 282 97-555 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 6.9E-46 1.5E-50 390.1 25.7 268 98-532 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 7.1E-45 1.5E-49 371.5 24.7 234 100-548 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.9E-44 4.1E-49 374.5 25.5 242 99-532 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 2E-44 4.3E-49 374.8 25.2 247 97-532 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 1.3E-43 2.9E-48 380.1 27.8 220 167-534 182-412 (412)
16 cd07485 Peptidases_S8_Fervidol 100.0 1.5E-43 3.2E-48 370.1 25.7 263 89-530 1-273 (273)
17 cd07487 Peptidases_S8_1 Peptid 100.0 4.6E-43 9.9E-48 365.0 27.3 256 97-532 1-264 (264)
18 cd07484 Peptidases_S8_Thermita 100.0 4.9E-43 1.1E-47 363.8 27.1 250 78-534 9-259 (260)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.5E-42 3.3E-47 359.0 25.3 232 90-533 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 5.1E-43 1.1E-47 369.5 21.9 263 100-532 1-291 (291)
21 cd07490 Peptidases_S8_6 Peptid 100.0 3.4E-42 7.5E-47 356.3 26.1 253 99-532 1-254 (254)
22 cd07494 Peptidases_S8_10 Pepti 100.0 2.5E-42 5.4E-47 363.1 25.2 252 87-536 10-287 (298)
23 cd07496 Peptidases_S8_13 Pepti 100.0 7.1E-42 1.5E-46 359.7 25.8 207 165-530 66-285 (285)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 8.2E-42 1.8E-46 361.1 25.2 277 93-532 2-293 (293)
25 cd07498 Peptidases_S8_15 Pepti 100.0 2.6E-41 5.6E-46 347.2 24.0 239 100-530 1-242 (242)
26 cd04843 Peptidases_S8_11 Pepti 100.0 3.7E-41 8E-46 350.2 23.2 247 85-532 2-277 (277)
27 cd07480 Peptidases_S8_12 Pepti 100.0 7.8E-41 1.7E-45 353.6 25.3 261 92-553 2-296 (297)
28 cd07473 Peptidases_S8_Subtilis 100.0 2.3E-40 5.1E-45 343.6 26.6 251 98-532 2-259 (259)
29 cd07477 Peptidases_S8_Subtilis 100.0 9.3E-40 2E-44 332.8 26.1 226 99-530 1-229 (229)
30 PF00082 Peptidase_S8: Subtila 100.0 4.4E-41 9.5E-46 353.5 16.8 272 101-557 1-282 (282)
31 KOG1153 Subtilisin-related pro 100.0 7.4E-41 1.6E-45 344.5 16.0 309 12-532 95-461 (501)
32 cd07491 Peptidases_S8_7 Peptid 100.0 3.7E-40 8E-45 337.3 20.9 157 97-297 2-171 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 2.4E-39 5.2E-44 342.4 24.1 253 99-530 1-294 (294)
34 cd04059 Peptidases_S8_Protein_ 100.0 1.4E-39 3.1E-44 344.7 20.5 250 85-532 26-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 1.4E-38 3.1E-43 322.4 24.4 221 99-532 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 6.4E-38 1.4E-42 326.5 23.8 242 96-532 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.7E-36 3.8E-41 319.7 20.4 338 14-557 63-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 8.2E-33 1.8E-37 282.1 16.9 193 166-531 33-247 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 2.8E-32 6E-37 300.0 18.8 238 169-557 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8.1E-31 1.8E-35 267.6 25.9 234 100-530 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.1E-23 2.3E-28 238.5 22.9 268 88-557 130-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.7E-21 5.9E-26 194.9 7.3 299 86-578 149-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4E-17 8.7E-22 176.8 14.6 100 197-299 82-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.0 3.7E-09 8E-14 99.2 11.8 109 325-452 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.0 6.4E-09 1.4E-13 95.4 12.0 115 305-427 2-125 (126)
46 PF06280 DUF1034: Fn3-like dom 98.7 3.9E-07 8.5E-12 81.7 13.0 88 612-703 1-112 (112)
47 KOG3525 Subtilisin-like propro 98.4 6.9E-07 1.5E-11 98.1 9.7 160 84-279 19-188 (431)
48 PF05922 Inhibitor_I9: Peptida 98.4 5.3E-07 1.1E-11 75.8 5.9 64 12-75 15-82 (82)
49 COG4934 Predicted protease [Po 98.3 8.2E-06 1.8E-10 96.5 15.5 94 198-294 288-395 (1174)
50 cd04816 PA_SaNapH_like PA_SaNa 98.2 6.8E-06 1.5E-10 74.8 9.9 79 347-426 29-120 (122)
51 PF02225 PA: PA domain; Inter 98.1 3.9E-06 8.5E-11 73.5 5.0 71 347-418 19-101 (101)
52 cd02130 PA_ScAPY_like PA_ScAPY 98.1 4.3E-05 9.3E-10 69.6 11.9 78 348-427 32-121 (122)
53 cd04818 PA_subtilisin_1 PA_sub 98.1 2.1E-05 4.5E-10 71.2 9.5 78 347-426 27-116 (118)
54 cd02129 PA_hSPPL_like PA_hSPPL 98.0 2.9E-05 6.3E-10 69.6 8.8 83 326-420 20-114 (120)
55 cd02122 PA_GRAIL_like PA _GRAI 98.0 4.1E-05 9E-10 70.9 9.5 80 347-427 44-137 (138)
56 cd02127 PA_hPAP21_like PA_hPAP 97.9 5.8E-05 1.3E-09 68.0 9.8 80 347-428 21-116 (118)
57 cd00538 PA PA: Protease-associ 97.9 3.9E-05 8.5E-10 70.0 8.7 78 347-425 30-123 (126)
58 cd02132 PA_GO-like PA_GO-like: 97.8 0.00012 2.7E-09 68.1 10.5 75 347-425 48-136 (139)
59 cd02126 PA_EDEM3_like PA_EDEM3 97.8 8.6E-05 1.9E-09 67.9 8.8 77 347-425 27-123 (126)
60 cd02125 PA_VSR PA_VSR: Proteas 97.8 0.00025 5.3E-09 64.8 10.6 79 347-426 22-125 (127)
61 cd04813 PA_1 PA_1: Protease-as 97.7 0.00015 3.2E-09 65.3 8.7 73 346-421 26-112 (117)
62 cd02124 PA_PoS1_like PA_PoS1_l 97.7 0.00017 3.7E-09 66.1 9.1 79 346-426 40-127 (129)
63 cd04817 PA_VapT_like PA_VapT_l 97.5 0.00035 7.6E-09 64.5 8.2 67 354-421 49-134 (139)
64 cd04819 PA_2 PA_2: Protease-as 97.5 0.0011 2.3E-08 60.9 10.7 83 325-422 22-121 (127)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.5 0.00053 1.2E-08 64.9 8.9 76 347-423 50-142 (153)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.1 0.017 3.6E-07 53.5 7.2 69 356-425 34-131 (134)
67 PF14874 PapD-like: Flagellar- 96.1 0.12 2.6E-06 45.1 12.2 80 623-705 21-100 (102)
68 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.11 2.5E-06 42.9 8.0 57 623-679 6-63 (78)
69 PF11614 FixG_C: IG-like fold 93.9 0.72 1.6E-05 41.5 10.8 60 620-680 29-88 (118)
70 PF06030 DUF916: Bacterial pro 93.8 1.1 2.3E-05 40.6 11.5 81 609-693 16-120 (121)
71 cd02128 PA_TfR PA_TfR: Proteas 93.0 0.15 3.2E-06 49.4 5.0 63 357-420 51-155 (183)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 92.5 0.88 1.9E-05 42.8 9.2 83 326-417 20-131 (151)
73 cd04820 PA_M28_1_1 PA_M28_1_1: 91.8 0.6 1.3E-05 43.1 7.2 58 326-392 22-96 (137)
74 cd04814 PA_M28_1 PA_M28_1: Pro 91.3 0.53 1.1E-05 43.8 6.2 59 325-392 19-100 (142)
75 COG1470 Predicted membrane pro 89.9 3.3 7.2E-05 45.3 11.5 80 612-693 389-469 (513)
76 COG1470 Predicted membrane pro 85.9 9.4 0.0002 41.9 11.9 56 623-679 285-346 (513)
77 PF00345 PapD_N: Pili and flag 85.7 6.1 0.00013 35.5 9.2 68 623-692 15-89 (122)
78 cd02121 PA_GCPII_like PA_GCPII 85.3 1.3 2.7E-05 44.5 4.8 35 357-392 67-106 (220)
79 KOG2442 Uncharacterized conser 85.1 3.3 7.1E-05 45.4 8.1 71 357-428 91-175 (541)
80 cd02131 PA_hNAALADL2_like PA_h 84.9 1.1 2.3E-05 41.9 3.7 34 358-392 37-75 (153)
81 KOG1114 Tripeptidyl peptidase 80.8 1.1 2.4E-05 52.6 2.7 49 656-707 636-689 (1304)
82 TIGR02745 ccoG_rdxA_fixG cytoc 79.7 9.2 0.0002 42.6 9.3 58 620-678 344-401 (434)
83 PF07718 Coatamer_beta_C: Coat 75.5 28 0.0006 32.2 9.6 68 623-692 70-138 (140)
84 KOG3920 Uncharacterized conser 72.6 5.4 0.00012 37.0 4.2 82 347-430 74-173 (193)
85 PF00635 Motile_Sperm: MSP (Ma 69.1 36 0.00078 29.5 8.8 53 623-678 19-71 (109)
86 PF07610 DUF1573: Protein of u 60.1 33 0.00072 24.9 5.6 44 628-674 2-45 (45)
87 KOG4628 Predicted E3 ubiquitin 58.9 27 0.00059 37.4 6.9 73 348-421 63-150 (348)
88 PRK15098 beta-D-glucoside gluc 52.8 34 0.00073 41.3 7.3 69 607-678 646-729 (765)
89 cd04821 PA_M28_1_2 PA_M28_1_2: 51.6 22 0.00047 33.8 4.3 37 354-391 42-102 (157)
90 PF07705 CARDB: CARDB; InterP 51.3 1.5E+02 0.0032 24.9 9.9 51 623-677 20-72 (101)
91 PLN03080 Probable beta-xylosid 50.6 44 0.00094 40.4 7.7 53 623-676 685-744 (779)
92 PF12690 BsuPI: Intracellular 45.4 62 0.0014 27.0 5.7 55 624-679 2-73 (82)
93 PF00927 Transglut_C: Transglu 43.5 2.2E+02 0.0047 24.7 9.6 55 623-678 16-78 (107)
94 smart00635 BID_2 Bacterial Ig- 42.9 68 0.0015 26.4 5.6 40 651-695 4-43 (81)
95 PF04744 Monooxygenase_B: Mono 38.0 2.9E+02 0.0063 29.9 10.5 67 623-693 264-362 (381)
96 PF02845 CUE: CUE domain; Int 32.5 43 0.00092 23.9 2.4 23 508-530 5-27 (42)
97 PF11906 DUF3426: Protein of u 32.0 3.6E+02 0.0079 24.8 9.4 57 623-680 69-140 (149)
98 PRK15019 CsdA-binding activato 30.2 50 0.0011 30.9 3.1 33 492-525 77-109 (147)
99 PF13940 Ldr_toxin: Toxin Ldr, 30.2 45 0.00097 22.6 1.9 13 499-511 14-26 (35)
100 PF00553 CBM_2: Cellulose bind 29.9 3.6E+02 0.0078 23.2 8.5 31 623-653 14-45 (101)
101 TIGR03391 FeS_syn_CsdE cystein 28.9 55 0.0012 30.3 3.1 34 492-526 72-105 (138)
102 PF05753 TRAP_beta: Translocon 27.5 5.2E+02 0.011 25.1 9.7 63 623-688 39-107 (181)
103 PRK13203 ureB urease subunit b 26.2 2.1E+02 0.0046 24.9 5.8 15 623-637 19-33 (102)
104 cd00407 Urease_beta Urease bet 26.1 2.1E+02 0.0045 24.9 5.8 15 623-637 19-33 (101)
105 PRK09296 cysteine desufuration 25.8 67 0.0015 29.8 3.1 33 492-525 67-99 (138)
106 PRK13202 ureB urease subunit b 25.4 2E+02 0.0044 25.1 5.6 14 624-637 21-34 (104)
107 PF04255 DUF433: Protein of un 24.8 61 0.0013 24.8 2.2 37 492-528 12-54 (56)
108 TIGR00192 urease_beta urease, 24.7 2.4E+02 0.0053 24.5 5.9 15 623-637 19-33 (101)
109 PF02657 SufE: Fe-S metabolism 24.0 79 0.0017 28.7 3.2 33 493-526 59-91 (125)
110 PF08260 Kinin: Insect kinin p 23.4 37 0.0008 15.4 0.4 6 444-449 3-8 (8)
111 PRK15308 putative fimbrial pro 23.0 2.5E+02 0.0054 28.6 6.8 53 624-677 33-101 (234)
112 COG2166 sufE Cysteine desulfur 22.3 81 0.0017 29.3 2.8 33 492-525 72-104 (144)
113 PF03160 Calx-beta: Calx-beta 22.1 4.8E+02 0.01 22.0 8.3 68 607-678 15-87 (100)
114 PF08821 CGGC: CGGC domain; I 21.9 4.3E+02 0.0094 23.2 7.3 41 203-245 36-76 (107)
115 TIGR01451 B_ant_repeat conserv 21.4 3.1E+02 0.0067 20.6 5.5 37 623-661 13-50 (53)
116 TIGR00845 caca sodium/calcium 21.2 8.5E+02 0.018 30.0 11.7 43 635-678 428-476 (928)
117 PF05506 DUF756: Domain of unk 21.0 4.9E+02 0.011 21.7 9.5 55 623-686 19-73 (89)
118 smart00546 CUE Domain that may 20.7 1.3E+02 0.0029 21.3 3.2 25 507-531 5-29 (43)
119 PRK15233 putative fimbrial cha 20.7 7.7E+02 0.017 25.2 9.8 55 623-680 55-114 (246)
120 PF01345 DUF11: Domain of unkn 20.5 2.5E+02 0.0055 22.5 5.3 30 623-652 42-72 (76)
121 PF13598 DUF4139: Domain of un 20.4 4.6E+02 0.0099 27.6 8.7 20 623-642 243-262 (317)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-51 Score=437.69 Aligned_cols=294 Identities=60% Similarity=0.929 Sum_probs=250.4
Q ss_pred eecccCCCccccccchhhhc-----cCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCcccc--CCce
Q 045363 72 RKLHTTRTWDFLGMSEKLQK-----RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR--CNKK 144 (712)
Q Consensus 72 ~~~~~~~s~~~~~~~~~~~~-----~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~--~n~k 144 (712)
+++++++++.++++. .+| ..+++|+||+|||||||||++||+|.+....+.+..|.+.|..+..+.. |++|
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLP--GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCC--CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCe
Confidence 467889999999996 444 4599999999999999999999999999888899999999999887764 8999
Q ss_pred eEEeEeccCCCCCCC-----CCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC-CCC
Q 045363 145 VIGARYYNLDNALDP-----NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS-GGC 218 (712)
Q Consensus 145 i~g~~~~~~~~~~~~-----~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~ 218 (712)
+++.++| .+++... ......+.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++. ..+
T Consensus 79 i~g~~~~-~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 79 LIGARYF-SDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEEEc-ccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 9999999 6654321 23345678899999999999999987766666666677799999999999999998 448
Q ss_pred ChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccC
Q 045363 219 ADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298 (712)
Q Consensus 219 ~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~ 298 (712)
..+++++||++|++++++|||||||......+.+.+..+++.+.++|++||+||||+|+.....++..||+++||+++
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 889999999999999999999999987545567778888888999999999999999988888888899999998631
Q ss_pred ceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhh
Q 045363 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTID 378 (712)
Q Consensus 299 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~ 378 (712)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcc
Q 045363 379 RLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNIL 458 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~l 458 (712)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred cCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 459 KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 459 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 77999999999998864211 111223356999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.2e-50 Score=445.03 Aligned_cols=300 Identities=19% Similarity=0.204 Sum_probs=217.4
Q ss_pred CCccccccchhhhcc--CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccc---cccCCccccCCceeEEeEecc
Q 045363 78 RTWDFLGMSEKLQKR--SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGK---CVTGANFTRCNKKVIGARYYN 152 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~--~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~f~~~n~ki~g~~~~~ 152 (712)
.+|.+-.+....+|+ .+.+|+||+|||||||||++||||.+.-+... ....|. ...+.++ -.-+.+++|
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~GrdgiDdD~nG~----vdd~~G~nf- 367 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRKGIDDDNNGN----VDDEYGANF- 367 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCccccccccCCc----ccccccccc-
Confidence 456665555557776 46789999999999999999999986432110 001111 0000000 001223444
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH
Q 045363 153 LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAI 231 (712)
Q Consensus 153 ~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 231 (712)
.++ ...+.|..||||||||||||...++.+ +.||||+|+|+++|+++..+ +..+++++||+||+
T Consensus 368 Vd~-------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~ 432 (639)
T PTZ00262 368 VNN-------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCI 432 (639)
T ss_pred cCC-------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHHHHHHHHHHH
Confidence 222 135678999999999999998655332 28999999999999998766 78899999999999
Q ss_pred hCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc--------------ccc----CCCceEEEc
Q 045363 232 GDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT--------------VEN----VAPWIMTVA 293 (712)
Q Consensus 232 ~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVg 293 (712)
+.|++|||||||+.. ....+..++.+|.++|++||+||||+|..... ++. ..|+||+||
T Consensus 433 ~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVG 509 (639)
T PTZ00262 433 SREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVS 509 (639)
T ss_pred HCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEe
Confidence 999999999999753 34566777889999999999999999864321 111 235666666
Q ss_pred eeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCch
Q 045363 294 ASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQ 373 (712)
Q Consensus 294 a~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~ 373 (712)
|++.+.
T Consensus 510 Av~~d~-------------------------------------------------------------------------- 515 (639)
T PTZ00262 510 NLIKDK-------------------------------------------------------------------------- 515 (639)
T ss_pred eccCCC--------------------------------------------------------------------------
Confidence 643210
Q ss_pred hHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcC
Q 045363 374 DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKI 453 (712)
Q Consensus 374 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~ 453 (712)
.....++.||++|..
T Consensus 516 ---------------------------------------------------------------~~~~s~s~~Snyg~~-- 530 (639)
T PTZ00262 516 ---------------------------------------------------------------NNQYSLSPNSFYSAK-- 530 (639)
T ss_pred ---------------------------------------------------------------CCcccccccccCCCC--
Confidence 000123455666522
Q ss_pred CCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC
Q 045363 454 TLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533 (712)
Q Consensus 454 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 533 (712)
++||+|||++|+++.+. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.+
T Consensus 531 -----~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~ 592 (639)
T PTZ00262 531 -----YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQ 592 (639)
T ss_pred -----cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCcc
Confidence 34999999999999874 359999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCC-CCcCccccCCCCeee
Q 045363 534 MKTKSDDAELASGS-GQINPTKAVHPGLIY 562 (712)
Q Consensus 534 ~~~~~~~~~~~~G~-G~in~~~A~~~~lv~ 562 (712)
++.. +..++| |+||+.+|++..+-+
T Consensus 593 l~~~----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 593 LPSL----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCCC----CCccccCcEEcHHHHHHHHHhc
Confidence 7653 333444 899999999966544
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.2e-48 Score=430.04 Aligned_cols=400 Identities=22% Similarity=0.223 Sum_probs=251.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCCcC-CCCCCCCCccccccccCCccccCCceeEEeEeccCCCC-----CCCCCCCCCCCC
Q 045363 95 KAQSNIIVGLLDTGIWVESPSFND-KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNA-----LDPNTDQKSPVD 168 (712)
Q Consensus 95 ~~G~gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~-----~~~~~~~~~~~d 168 (712)
++|+||+|||||||||+.||+|++ ++.+++...|++.+..+.. .....+...|..+.. ...+.+.....|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP----PGGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC----CccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 489999999999999999999995 4567888899988765431 111222222201100 011233345678
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-----------CChHHHHHHHHHHHhC----
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-----------CADMDILAAFDDAIGD---- 233 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~---- 233 (712)
..||||||||||||+..++.. +.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 77 ~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~ 148 (455)
T cd07478 77 ENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALEL 148 (455)
T ss_pred CCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999765333 38999999999999998764 4678999999999874
Q ss_pred -CCcEEEeccCCCCC-CCccchHHHHHHHhhhc-CceEEEecCCCCCCCCccccC-CC----c--eEEEceeccCc----
Q 045363 234 -GVDLISISIGGPSR-SYFDDSISIGSFHAMKK-GILTACSAGNDGPYQGTVENV-AP----W--IMTVAASSIDR---- 299 (712)
Q Consensus 234 -g~dVIN~S~G~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~p----~--vitVga~~~~~---- 299 (712)
.+.|||||||.+.. ......++.++..+..+ |++||+||||+|....+.... .+ . -+.|+......
T Consensus 149 ~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~ei 228 (455)
T cd07478 149 NKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEI 228 (455)
T ss_pred CCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEEE
Confidence 47899999998743 33456677777676665 999999999999754333221 00 0 12222211110
Q ss_pred ------eeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCch
Q 045363 300 ------KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQ 373 (712)
Q Consensus 300 ------~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~ 373 (712)
.+.-.+..+.|+......... -....+...+.. ...|.........-..+.+++..
T Consensus 229 W~~~~d~~~v~i~sP~Ge~~~~i~~~~--~~~~~~~~~~~~------------t~i~v~y~~~~~~~g~~~i~i~~---- 290 (455)
T cd07478 229 WGDFPDRFSVSIISPSGESSGRINPGI--GGSESYKFVFEG------------TTVYVYYYLPEPYTGDQLIFIRF---- 290 (455)
T ss_pred ecCCCCEEEEEEECCCCCccCccCcCC--CcceeEEEEECC------------eEEEEEEcCCCCCCCCeEEEEEc----
Confidence 000111111111110000000 000000111100 00111101000001111111111
Q ss_pred hHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEe------eeeeC--CCCCccccc
Q 045363 374 DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKT------RVVNT--STAPFIASF 445 (712)
Q Consensus 374 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~------~t~~~--~~~~~~a~f 445 (712)
.....|.+-+.+......+...+.++|.-.+...+..++.. ... .+++.. .++.. ...+.++.|
T Consensus 291 --~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~----~~~--~tit~Pa~~~~vitVga~~~~~~~~~~~ 362 (455)
T cd07478 291 --KNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEP----DPY--TTLTIPGTARSVITVGAYNQNNNSIAIF 362 (455)
T ss_pred --cCCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecC----CCC--ceEecCCCCCCcEEEEEEeCCCCcccCc
Confidence 33445777777777666555677788876665554433322 221 222221 12222 334569999
Q ss_pred cCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhC------CCCC
Q 045363 446 SSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH------PDWS 519 (712)
Q Consensus 446 Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~ls 519 (712)
|||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++ |.|+
T Consensus 363 Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~ 427 (455)
T cd07478 363 SGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLY 427 (455)
T ss_pred cCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCC
Confidence 9999998 999999999999999999874 359999999999999999999999975 5679
Q ss_pred HHHHHHHHHccccCCCCCCCCCCCCCCCC
Q 045363 520 PAAIKSALMTTATPMKTKSDDAELASGSG 548 (712)
Q Consensus 520 p~~ik~~L~~TA~~~~~~~~~~~~~~G~G 548 (712)
+++||++|++||+++... ++++++||||
T Consensus 428 ~~~ik~~L~~tA~~~~~~-~~pn~~~GyG 455 (455)
T cd07478 428 GEKIKTYLIRGARRRPGD-EYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHHHhCccCCCC-CCCCCCCCCC
Confidence 999999999999998743 5578999998
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.3e-48 Score=405.53 Aligned_cols=270 Identities=25% Similarity=0.255 Sum_probs=203.9
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCCh
Q 045363 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHG 173 (712)
Q Consensus 94 ~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHG 173 (712)
+++|+||+|+|||||||.+||++.+... .++.+...+ ... .....|..+||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---------------------~~l~~~~~~-~~~-------~~~~~d~~gHG 51 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---------------------GDLPGNVNV-LGD-------LDGGSGGGDEG 51 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---------------------CCCCcceee-ccc-------cCCCCCCCchH
Confidence 5799999999999999999986532211 111111111 111 12455788999
Q ss_pred hHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCC-ccc
Q 045363 174 THTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY-FDD 252 (712)
Q Consensus 174 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~-~~~ 252 (712)
||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||....++ .+.
T Consensus 52 T~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 109 (275)
T cd05562 52 RAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDG 109 (275)
T ss_pred HHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCC
Confidence 9999999 388999999999874 34788999999999999999999999865443 344
Q ss_pred hHHHHHHHhhhc-CceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeee
Q 045363 253 SISIGSFHAMKK-GILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPL 330 (712)
Q Consensus 253 ~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 330 (712)
.+..++.++.++ |++||+||||+|... ...+...|++|+|||++.........
T Consensus 110 ~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------------- 164 (275)
T cd05562 110 PIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------------- 164 (275)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------------------------
Confidence 577777888887 999999999999854 33467789999999986542110000
Q ss_pred EecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhh
Q 045363 331 TNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEV 410 (712)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 410 (712)
|. +..
T Consensus 165 -------------------~~-----------------------------~~~--------------------------- 169 (275)
T cd05562 165 -------------------DP-----------------------------APG--------------------------- 169 (275)
T ss_pred -------------------cc-----------------------------ccC---------------------------
Confidence 00 000
Q ss_pred HHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC-cEEeeecCCccCCCCCCCCCcc
Q 045363 411 GIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL-DILAAYSELASVTGLPGDRRIV 489 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~ 489 (712)
......+.|+++||+. ++++||||+|||. ++.+.+.. .
T Consensus 170 --------------------------~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~ 208 (275)
T cd05562 170 --------------------------GTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------D 208 (275)
T ss_pred --------------------------CCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------C
Confidence 0011345678899987 8899999999975 33444322 3
Q ss_pred ceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 490 ~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 209 ~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~--~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 209 GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE--PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC--CCCCCCcCcCcccHHHHhh
Confidence 58999999999999999999999999999999999999999998864 3367889999999999986
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.7e-48 Score=400.37 Aligned_cols=243 Identities=29% Similarity=0.395 Sum_probs=198.0
Q ss_pred ccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCC
Q 045363 91 KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTD 170 (712)
Q Consensus 91 ~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~ 170 (712)
|+.+++|+||+|||||||||.+||+|.+.. ...+| ... ....|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~--------------------------~~~~~-~~~--------~~~~d~~ 45 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK--------------------------ERTNW-TNE--------KTLDDGL 45 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc--------------------------ccccc-CCC--------CCCCCCC
Confidence 899999999999999999999999996420 01122 111 2345778
Q ss_pred CChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 045363 171 GHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSY 249 (712)
Q Consensus 171 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~ 249 (712)
+|||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++++||++++++|||||||... +
T Consensus 46 gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~ 112 (255)
T cd07479 46 GHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--F 112 (255)
T ss_pred CcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--C
Confidence 999999999998742 128999999999999998766 56778999999999999999999999863 2
Q ss_pred ccchHHHHHHHhhhcCceEEEecCCCCCCCCc--cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCce
Q 045363 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGT--VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAM 327 (712)
Q Consensus 250 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 327 (712)
.+.++..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 113 ~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 163 (255)
T cd07479 113 MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------------- 163 (255)
T ss_pred CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-----------------------------
Confidence 34556666778889999999999999975433 35566889999875422
Q ss_pred eeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeC
Q 045363 328 YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVV 407 (712)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 407 (712)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcC----CCCcccCcEEeCCCcEEeeecCCccCCCCC
Q 045363 408 PEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKI----TLNILKPDIAAPGLDILAAYSELASVTGLP 483 (712)
Q Consensus 408 ~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 483 (712)
+.++.|||+|++.. ..+++||||.|||.+|+++...
T Consensus 164 --------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-------- 203 (255)
T cd07479 164 --------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-------- 203 (255)
T ss_pred --------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC--------
Confidence 36788999996532 2678999999999999987543
Q ss_pred CCCCccceEeeecccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHccccCCC
Q 045363 484 GDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP----DWSPAAIKSALMTTATPMK 535 (712)
Q Consensus 484 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~lsp~~ik~~L~~TA~~~~ 535 (712)
..|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 204 -----~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -----GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -----CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3488999999999999999999999998 7999999999999999875
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5e-48 Score=407.15 Aligned_cols=286 Identities=29% Similarity=0.273 Sum_probs=189.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|+|||||||.+||||.+.... .|...++ ...++. .+++........+.|.+||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-------~~~~~~-------~g~d~~~~~~~~~~D~~gHGThv 62 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-------YKAYLL-------PGMDKWGGFYVIMYDFFSHGTSC 62 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-------cCCCcc-------CCcCCCCCccCCCCCccccchhH
Confidence 89999999999999999999753210 1110000 000111 11111111123567899999999
Q ss_pred HHHhccCCCCCCccccc-ccceeeeecCCCeEEEEEeecCCC-CChHHHHH-------HHHHH--HhCCCcEEEeccCCC
Q 045363 177 SSTAAGETVKGASLYGI-AQGTARGGVPSARIAMYKVCWSGG-CADMDILA-------AFDDA--IGDGVDLISISIGGP 245 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVIN~S~G~~ 245 (712)
||||||+.....+.+++ ....+.||||+|+|+.+|++...+ .....+.+ +++|+ .+++++|||||||..
T Consensus 63 AGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 63 ASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred HHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 99999986533222211 112348999999999999997543 32222222 34443 367999999999986
Q ss_pred CCCCc-----cchHHHHHHH-hhhcCceEEEecCCCCCCCC--ccccCCCceEEEceeccCceeEEEEEeCCCceEeeee
Q 045363 246 SRSYF-----DDSISIGSFH-AMKKGILTACSAGNDGPYQG--TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGIS 317 (712)
Q Consensus 246 ~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 317 (712)
...+. .+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++..+..+...
T Consensus 143 ~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------ 210 (311)
T cd07497 143 NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------ 210 (311)
T ss_pred CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------------
Confidence 32211 1222222222 24889999999999997643 3456789999999986431100000
Q ss_pred eecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCccc
Q 045363 318 INTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAI 397 (712)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 397 (712)
... + .
T Consensus 211 ------------~~~-----------------~--------------------------~-------------------- 215 (311)
T cd07497 211 ------------FGY-----------------L--------------------------P-------------------- 215 (311)
T ss_pred ------------hcc-----------------c--------------------------c--------------------
Confidence 000 0 0
Q ss_pred ceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCc
Q 045363 398 ATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477 (712)
Q Consensus 398 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 477 (712)
...+.++.||||||+. ++++||||+|||++|+++.+...
T Consensus 216 ---------------------------------------~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~ 254 (311)
T cd07497 216 ---------------------------------------GGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLD 254 (311)
T ss_pred ---------------------------------------CCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCC
Confidence 1235789999999998 89999999999999999876432
Q ss_pred cCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 045363 478 SVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP------DWSPAAIKSALMTTA 531 (712)
Q Consensus 478 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~lsp~~ik~~L~~TA 531 (712)
.... ......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 255 ~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 255 SGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 1000 11224699999999999999999999999876 589999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.5e-47 Score=414.24 Aligned_cols=308 Identities=30% Similarity=0.352 Sum_probs=231.1
Q ss_pred hhccCCC-CCCCcEEEEEcCCCCCCCCCCcCCCCCCCCC-----ccccccccCCccccCCceeEEeEeccCCCCCCCCCC
Q 045363 89 LQKRSSK-AQSNIIVGLLDTGIWVESPSFNDKGFGPPPA-----KWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTD 162 (712)
Q Consensus 89 ~~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~ 162 (712)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+.... .+.+++.+++| .++.. +
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~----~ 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKY-YNEKVPFAYNY-ADNND----D 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcc-cccCCCeeEcC-CCCCC----c
Confidence 3788877 9999999999999999999998764332111 1222222221111 67888899998 54421 1
Q ss_pred CCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC--CC-CChHHHHHHHHHHHhCCCcEEE
Q 045363 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS--GG-CADMDILAAFDDAIGDGVDLIS 239 (712)
Q Consensus 163 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~g~dVIN 239 (712)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ .....+++|++++++.|++|||
T Consensus 75 ~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin 149 (346)
T cd07475 75 ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVIN 149 (346)
T ss_pred cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11245788999999999999875421 1123499999999999999973 33 7778899999999999999999
Q ss_pred eccCCCCCC-CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc----------------ccCCCceEEEceeccCceeE
Q 045363 240 ISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV----------------ENVAPWIMTVAASSIDRKFV 302 (712)
Q Consensus 240 ~S~G~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~ 302 (712)
||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+++...
T Consensus 150 ~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~--- 226 (346)
T cd07475 150 MSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV--- 226 (346)
T ss_pred ECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc---
Confidence 999987422 3456667778888999999999999998654221 12335555555532100
Q ss_pred EEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCc
Q 045363 303 TAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQG 382 (712)
Q Consensus 303 ~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga 382 (712)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcE
Q 045363 383 AGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDI 462 (712)
Q Consensus 383 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 462 (712)
.......++.||+|||+. .+++||||
T Consensus 227 ----------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi 252 (346)
T cd07475 227 ----------------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDI 252 (346)
T ss_pred ----------------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence 002335788999999998 89999999
Q ss_pred EeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHccccCC
Q 045363 463 AAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF----HPDWSPAA----IKSALMTTATPM 534 (712)
Q Consensus 463 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~----ik~~L~~TA~~~ 534 (712)
+|||.+|+++... ..|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.
T Consensus 253 ~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~ 319 (346)
T cd07475 253 TAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPP 319 (346)
T ss_pred EeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcc
Confidence 9999999998653 35889999999999999999999998 78999876 788999999953
Q ss_pred CCC----CCCCCCCCCCCCcCccccCC
Q 045363 535 KTK----SDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 535 ~~~----~~~~~~~~G~G~in~~~A~~ 557 (712)
... ..+.+.++|+|+||+++|++
T Consensus 320 ~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 320 LDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cccCCCCccCCccccCcchhcHHHhhC
Confidence 322 33467889999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-46 Score=398.78 Aligned_cols=284 Identities=32% Similarity=0.443 Sum_probs=225.2
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCC--CCCCCCC
Q 045363 88 KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD--PNTDQKS 165 (712)
Q Consensus 88 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~--~~~~~~~ 165 (712)
+.+|+.+++|+||+|||||+|||++||+|.+... .+.++.+.++|+.+.+.. ...+...
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~-------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~ 63 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG-------------------PGCKVAGGYDFVGDDYDGTNPPVPDDD 63 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC-------------------CCceeccccccCCcccccccCCCCCCC
Confidence 3899999999999999999999999999986421 112233333441222110 0122245
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGG 244 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~ 244 (712)
+.|..+|||||||||+|+..+ .| +.||||+|+|+.+|+++..+ .....+++++++|++++++|||||||.
T Consensus 64 ~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~ 134 (312)
T cd07489 64 PMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGG 134 (312)
T ss_pred CCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 567799999999999998754 12 28999999999999998655 667789999999999999999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
.. .+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 135 ~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------- 188 (312)
T cd07489 135 PS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------- 188 (312)
T ss_pred CC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------
Confidence 74 233466777777888999999999999986532 2345667888887632
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
+.||++||+. +...||||+|||.+++++++..
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----- 220 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----- 220 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----
Confidence 4578999998 7899999999999999987651
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHccccCCCCC-C------CCCCCCCCCCCcCcc
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH-PDWSPAAIKSALMTTATPMKTK-S------DDAELASGSGQINPT 553 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~lsp~~ik~~L~~TA~~~~~~-~------~~~~~~~G~G~in~~ 553 (712)
...|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++... . ..+..++|||+||++
T Consensus 221 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 221 ------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAY 294 (312)
T ss_pred ------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHH
Confidence 1258999999999999999999999999 9999999999999999987654 1 134578999999999
Q ss_pred ccCCCC
Q 045363 554 KAVHPG 559 (712)
Q Consensus 554 ~A~~~~ 559 (712)
+|++..
T Consensus 295 ~a~~~~ 300 (312)
T cd07489 295 KALYAT 300 (312)
T ss_pred HHhcCC
Confidence 999954
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=6.6e-46 Score=384.38 Aligned_cols=247 Identities=26% Similarity=0.306 Sum_probs=203.3
Q ss_pred hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCC
Q 045363 90 QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDT 169 (712)
Q Consensus 90 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~ 169 (712)
+|+.+++|+||+|||||+|||.+||+|.+..+.+ ...+ .. ......|.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~------------------------~~~~-~~-------~~~~~~~~ 49 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP------------------------LFTY-AA-------AACQDGGA 49 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc------------------------ccCc-cc-------cCCCCCCC
Confidence 7999999999999999999999999997642211 0011 10 11244567
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSR 247 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~ 247 (712)
.+|||||||||+|+..+ .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||....
T Consensus 50 ~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 119 (267)
T cd07476 50 SAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ 119 (267)
T ss_pred CCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC
Confidence 89999999999987532 138999999999999997654 446789999999999999999999997632
Q ss_pred -CCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCc
Q 045363 248 -SYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKA 326 (712)
Q Consensus 248 -~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 326 (712)
......+..++..+.++|++||+||||+|......+...|++|+|||++.+
T Consensus 120 ~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 171 (267)
T cd07476 120 TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------------- 171 (267)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------------
Confidence 234566778888899999999999999998877788888999999986422
Q ss_pred eeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEe
Q 045363 327 MYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFV 406 (712)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 406 (712)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCC
Q 045363 407 VPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDR 486 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 486 (712)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 ---------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~----------- 202 (267)
T cd07476 172 ---------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG----------- 202 (267)
T ss_pred ---------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-----------
Confidence 2456789999764 388999999999998764
Q ss_pred CccceEeeecccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHccccCCCCC
Q 045363 487 RIVPFNILSGTSMACPHAAAAAAYVKSFHPD----WSPAAIKSALMTTATPMKTK 537 (712)
Q Consensus 487 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----lsp~~ik~~L~~TA~~~~~~ 537 (712)
+.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 203 --~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 --GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 35899999999999999999999999887 89999999999999998764
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-45 Score=388.94 Aligned_cols=282 Identities=37% Similarity=0.538 Sum_probs=217.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCC-------CCCCCCCC
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNT-------DQKSPVDT 169 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~-------~~~~~~d~ 169 (712)
|+||+|||||+|||++||+|.+..+ .+.++...++|.......... ......|.
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA 61 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-------------------CCCceeeeeECccCCCCcccccccccccccCCCCCC
Confidence 8999999999999999999975421 344555566662222111000 01124568
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRS 248 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~ 248 (712)
.+|||||||+|+|...+.. .+.||||+|+|+.+|++...+ +...+++++|+++++++++|||||||.....
T Consensus 62 ~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~ 133 (295)
T cd07474 62 TGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG 133 (295)
T ss_pred CCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 8999999999999875522 238999999999999998544 7888999999999999999999999986422
Q ss_pred CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc--ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCc
Q 045363 249 YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV--ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKA 326 (712)
Q Consensus 249 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 326 (712)
..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 134 -~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 134 -PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred -CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 456677778889999999999999998765544 556799999998641100
Q ss_pred eeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEe
Q 045363 327 MYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFV 406 (712)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 406 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcccccc-CCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCC
Q 045363 407 VPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFS-SRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGD 485 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fS-s~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 485 (712)
........|+ +.|++. ...+||||+|||.+|.+++...
T Consensus 187 ------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~--------- 225 (295)
T cd07474 187 ------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS--------- 225 (295)
T ss_pred ------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC---------
Confidence 0011233444 445555 7889999999999999987641
Q ss_pred CCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC--CCCCCCCCCCCCcCcccc
Q 045363 486 RRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK--SDDAELASGSGQINPTKA 555 (712)
Q Consensus 486 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~--~~~~~~~~G~G~in~~~A 555 (712)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++.... ..+++..+|+|+||+.+|
T Consensus 226 --~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 --GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred --CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 24589999999999999999999999999999999999999999998776 223467899999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=6.9e-46 Score=390.13 Aligned_cols=268 Identities=26% Similarity=0.367 Sum_probs=189.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcCCCCCCCCC-cccccccc---------CCcccc--CCceeEEeEeccCCCCCCCCCCCCC
Q 045363 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPA-KWKGKCVT---------GANFTR--CNKKVIGARYYNLDNALDPNTDQKS 165 (712)
Q Consensus 98 ~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-~~~g~~~~---------~~~f~~--~n~ki~g~~~~~~~~~~~~~~~~~~ 165 (712)
|+|+|||||||||++||+|++..+..... ...|.... |.+|.. ..+++++...+........+.+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998754321110 11121111 222221 1111221111100000001122334
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGP 245 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~ 245 (712)
+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 557899999999999998755332 289999999999999876557778999999999999999999999975
Q ss_pred CCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCcc---c--------cCCCceEEEceeccCceeEEEEEeCCCceEe
Q 045363 246 SRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV---E--------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314 (712)
Q Consensus 246 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---~--------~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 314 (712)
... ....+..++..+.++|+++|+||||+|...... + ...+++|+|||++..
T Consensus 153 ~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (291)
T cd07483 153 FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK---------------- 215 (291)
T ss_pred CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc----------------
Confidence 322 334566777788999999999999998643211 1 123556666654321
Q ss_pred eeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCC
Q 045363 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTD 394 (712)
Q Consensus 315 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 394 (712)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeec
Q 045363 395 IAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474 (712)
Q Consensus 395 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 474 (712)
.....++.||++|+. +|||.|||.+|+++.+
T Consensus 216 ------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~ 246 (291)
T cd07483 216 ------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIYSTTP 246 (291)
T ss_pred ------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeEeccC
Confidence 011257889999974 4599999999999876
Q ss_pred CCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 475 ELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
. ..|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 247 ~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 247 D-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred c-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 4 35899999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-45 Score=371.53 Aligned_cols=234 Identities=26% Similarity=0.403 Sum_probs=192.0
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|||||||||.+||+|++... ..+++ .. ....|..+||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-------------------------~~~~~-~~---------~~~~~~~~HGT~vAgi 45 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-------------------------ARLFF-AG---------PGAPAPSAHGTAVASL 45 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-------------------------ccccC-CC---------CCCCCCCCCHHHHHHH
Confidence 7899999999999999965321 11111 11 1345678999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC----CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG----CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSIS 255 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~ 255 (712)
|+|+..+. .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...+.
T Consensus 46 ia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~ 110 (239)
T cd05561 46 LAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLA 110 (239)
T ss_pred HhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHH
Confidence 99885321 6999999999999998642 67788999999999999999999999753 34566
Q ss_pred HHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecc
Q 045363 256 IGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGA 334 (712)
Q Consensus 256 ~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 334 (712)
.++.++.++|++||+||||+|... ..++...+++|+|++++.+
T Consensus 111 ~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------ 154 (239)
T cd05561 111 AAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------ 154 (239)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC------------------------------------
Confidence 777789999999999999998753 3566677899999875422
Q ss_pred cccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHH
Q 045363 335 RAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 335 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l 414 (712)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEee
Q 045363 415 DQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNIL 494 (712)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 494 (712)
+.++.||++|+.. ||+|||.+|+++.+. ..|..+
T Consensus 155 -------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~ 188 (239)
T cd05561 155 -------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYV 188 (239)
T ss_pred -------------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEe
Confidence 2567899999977 999999999997653 358999
Q ss_pred ecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCC
Q 045363 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSG 548 (712)
Q Consensus 495 sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G 548 (712)
+|||||||||||++|||+|++| +++++||++|++||+++... ..+..||||
T Consensus 189 sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~--~~d~~~G~G 239 (239)
T cd05561 189 SGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP--GRDPVFGYG 239 (239)
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC--CcCCCcCCC
Confidence 9999999999999999999999 99999999999999988753 367789998
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-44 Score=374.46 Aligned_cols=242 Identities=31% Similarity=0.368 Sum_probs=196.0
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCC-CCCCCCChhHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKS-PVDTDGHGTHTS 177 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~-~~d~~gHGThVA 177 (712)
||+||||||||+++||+|....+. .+.++.+.++| .+.. .. ..|..+||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~------------------~~~~i~~~~~~-~~~~-------~~~~~~~~~HGT~va 54 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF------------------KNLRILGEYDF-VDNS-------NNTNYTDDDHGTAVL 54 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc------------------cCCceeeeecC-ccCC-------CCCCCCCCCchhhhh
Confidence 799999999999999999522110 34567777888 4432 12 367889999999
Q ss_pred HHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCc----
Q 045363 178 STAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIGDGVDLISISIGGPSRSYF---- 250 (712)
Q Consensus 178 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~---- 250 (712)
|+|+|+.. +.+.||||+|+|+.+|+..... .....+++|++++.+.+++|||||||.......
T Consensus 55 giia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~ 124 (261)
T cd07493 55 STMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSY 124 (261)
T ss_pred eeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc
Confidence 99998853 2248999999999999876432 345678999999999999999999998742211
Q ss_pred --------cchHHHHHHHhhhcCceEEEecCCCCCC---CCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeee
Q 045363 251 --------DDSISIGSFHAMKKGILTACSAGNDGPY---QGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319 (712)
Q Consensus 251 --------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 319 (712)
...+..++..+.++|++||+||||+|.. ....+...+++|+|||.+.+
T Consensus 125 ~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------- 183 (261)
T cd07493 125 TYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------------------- 183 (261)
T ss_pred ccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------------------
Confidence 1346677788899999999999999976 34566778999999986422
Q ss_pred cCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccce
Q 045363 320 TFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIAT 399 (712)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 399 (712)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccC
Q 045363 400 LIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479 (712)
Q Consensus 400 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 479 (712)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 ----------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---- 217 (261)
T cd07493 184 ----------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---- 217 (261)
T ss_pred ----------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC----
Confidence 2567899999998 899999999999999885432
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ---------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ---------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2e-44 Score=374.79 Aligned_cols=247 Identities=32% Similarity=0.422 Sum_probs=194.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|||||+|||++||+|.+. + .+..... +...+.+ .+. ......+.|..+|||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~-------~~~~~~~---------~~~~~~~-~d~----~~~~~~~~d~~~HGT~v 58 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-Y-------RGWGGGS---------ADHDYNW-FDP----VGNTPLPYDDNGHGTHT 58 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-c-------cccCCCC---------ccccccc-ccC----CCCCCCCCCCCCchhhh
Confidence 89999999999999999999864 1 1100000 0000011 010 11123456788999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh------------CCCcEEEeccCC
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG------------DGVDLISISIGG 244 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVIN~S~G~ 244 (712)
||||+|...++ ...||||+|+|+.+|+++..++...+++++++++++ .+++|||||||.
T Consensus 59 agii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 59 MGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred hhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 99999875331 127999999999999998877888899999999975 789999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc---cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT---VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
... ....+..++..+.++|++||+||||++..... .+...|++|+||+++.+
T Consensus 130 ~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------- 184 (264)
T cd07481 130 PSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------- 184 (264)
T ss_pred CCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------
Confidence 743 24455566667888999999999999865432 45667899999875422
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
+.++.||++||.. .+++||||+|||.+|.++.+.
T Consensus 185 --------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------ 218 (264)
T cd07481 185 --------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------ 218 (264)
T ss_pred --------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC------
Confidence 3678899999998 799999999999999998764
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD--WSPAAIKSALMTTAT 532 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 -------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 -------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999999999999 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.3e-43 Score=380.14 Aligned_cols=220 Identities=27% Similarity=0.312 Sum_probs=166.1
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHhCCCcEEEeccC
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIGDGVDLISISIG 243 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~S~G 243 (712)
.|+.+|||||||||||+..++. .+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4678999999999999864432 238999999999999987532 23457999999999999999999999
Q ss_pred CCCCCCccchHHHHHH-HhhhcCceEEEecCCCCCCCCccc--c-CCCceEEEceeccCceeEEEEEeCCCceEeeeeee
Q 045363 244 GPSRSYFDDSISIGSF-HAMKKGILTACSAGNDGPYQGTVE--N-VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319 (712)
Q Consensus 244 ~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 319 (712)
..........+..++. .+.++|+++|+||||+|+...++. . ..+++|+|||+.....+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 8742112222333333 345689999999999998766543 2 46899999996432100000
Q ss_pred cCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccce
Q 045363 320 TFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIAT 399 (712)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 399 (712)
|.+.
T Consensus 319 --------y~~~-------------------------------------------------------------------- 322 (412)
T cd04857 319 --------YSLR-------------------------------------------------------------------- 322 (412)
T ss_pred --------cccc--------------------------------------------------------------------
Confidence 0000
Q ss_pred eeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccC
Q 045363 400 LIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479 (712)
Q Consensus 400 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 479 (712)
....+.++.||||||+. ++.+||||+|||..|.+....
T Consensus 323 ------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~---- 360 (412)
T cd04857 323 ------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW---- 360 (412)
T ss_pred ------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC----
Confidence 01124688999999999 999999999999999875221
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHccccCC
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPM 534 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~ 534 (712)
....|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 -------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 -------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 114589999999999999999999985 478999999999999999874
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.5e-43 Score=370.15 Aligned_cols=263 Identities=28% Similarity=0.356 Sum_probs=201.5
Q ss_pred hhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCC
Q 045363 89 LQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVD 168 (712)
Q Consensus 89 ~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d 168 (712)
.+|..+++|+||+|+|||||||++||+|.+...... |. .....+.+ .... ........|
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~-------------~~----~~~~~~~~-~~~~---~~~~~~~~~ 59 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-------------YD----PAVNGYNF-VPNV---GDIDNDVSV 59 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC-------------cc----cccCCccc-cccc---CCcCCCCCC
Confidence 379999999999999999999999999987511100 00 00000001 0000 001134456
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSR 247 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~ 247 (712)
..+|||||||||+|+.++.....|.+ .+.|+||+|+|+.+|++...+ ....+++++|++|++.|++|||||||....
T Consensus 60 ~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~ 137 (273)
T cd07485 60 GGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG 137 (273)
T ss_pred CCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc
Confidence 78999999999999865533322222 236799999999999998755 777889999999999999999999998753
Q ss_pred CCccchHHHHHHHhhhc-------CceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeec
Q 045363 248 SYFDDSISIGSFHAMKK-------GILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINT 320 (712)
Q Consensus 248 ~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 320 (712)
..+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~---------------------- 195 (273)
T cd07485 138 GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN---------------------- 195 (273)
T ss_pred cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------------
Confidence 34555666777777777 9999999999998877667888999999986422
Q ss_pred CCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCccccee
Q 045363 321 FSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATL 400 (712)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 400 (712)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC-cEEeeecCCccC
Q 045363 401 IAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL-DILAAYSELASV 479 (712)
Q Consensus 401 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~ 479 (712)
+.++.||++|+.. ||+|||. .|+++.+...
T Consensus 196 ---------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~-- 226 (273)
T cd07485 196 ---------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD-- 226 (273)
T ss_pred ---------------------------------------CCcCccccCCCce--------EEEeCCCCcccccccccc--
Confidence 2567899999987 9999999 8888876421
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD-WSPAAIKSALMTT 530 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-lsp~~ik~~L~~T 530 (712)
......|..++|||||||+|||++|||+|++|+ |+++|||++|++|
T Consensus 227 -----~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 227 -----GDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -----CCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 112346899999999999999999999999999 9999999999986
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-43 Score=364.99 Aligned_cols=256 Identities=32% Similarity=0.472 Sum_probs=203.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|+|||+||+++||+|.+.... ...+ ... ........|..+|||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-------------------------~~~~-~~~----~~~~~~~~d~~~HGT~v 50 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-------------------------FADF-VNT----VNGRTTPYDDNGHGTHV 50 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-------------------------cccc-ccc----ccCCCCCCCCCCchHHH
Confidence 89999999999999999999864211 0111 110 01123556778999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC----CCcEEEeccCCCCC-CCc
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD----GVDLISISIGGPSR-SYF 250 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~S~G~~~~-~~~ 250 (712)
||+|+|+..+. .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.... ...
T Consensus 51 Agiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~ 123 (264)
T cd07487 51 AGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYG 123 (264)
T ss_pred HHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCC
Confidence 99999986542 12249999999999999998876 6778999999999998 99999999998743 345
Q ss_pred cchHHHHHHHhhhcCceEEEecCCCCCCCC--ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCcee
Q 045363 251 DDSISIGSFHAMKKGILTACSAGNDGPYQG--TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMY 328 (712)
Q Consensus 251 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 328 (712)
...+..++.++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 124 ~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------- 175 (264)
T cd07487 124 EDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------- 175 (264)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------
Confidence 677788888999999999999999997765 55667899999998754310
Q ss_pred eeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeCh
Q 045363 329 PLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVP 408 (712)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 408 (712)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCc
Q 045363 409 EVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRI 488 (712)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 488 (712)
....++.||++||+. ++++||||+|||.+|++..+..... .....
T Consensus 176 -----------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~ 220 (264)
T cd07487 176 -----------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVG 220 (264)
T ss_pred -----------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCC
Confidence 002478899999998 9999999999999999986532100 01223
Q ss_pred cceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 489 VPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 489 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 221 ~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 221 SGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred CceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 56899999999999999999999999999999999999999985
No 18
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=4.9e-43 Score=363.83 Aligned_cols=250 Identities=30% Similarity=0.408 Sum_probs=209.4
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
..|.+..+....+|..+ +|+||+|+|||+||+++||+|... ++...+++ .++.
T Consensus 9 ~~w~~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~------------------------~~~~~~~~-~~~~- 61 (260)
T cd07484 9 YQWNLDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV------------------------KFVLGYDF-VDND- 61 (260)
T ss_pred cCCCccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC------------------------Ccccceec-cCCC-
Confidence 46777777777999998 999999999999999999998422 23333444 2221
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||||++...+... +.|+||+|+|+.+|+++..+ +...+++++|+++++.+++
T Consensus 62 ------~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 62 ------SDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAK 127 (260)
T ss_pred ------CCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCe
Confidence 23567889999999999987644322 28999999999999998765 7788899999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------ 186 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------ 186 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------
Confidence 9999999864 4456667777888999999999999998888888889999999986432
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++|+.. |++|||.+|++....
T Consensus 187 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~- 214 (260)
T cd07484 187 -------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD- 214 (260)
T ss_pred -------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-
Confidence 2567889999876 999999999988653
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPM 534 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~ 534 (712)
..|..++|||||||+|||++|||++++| |++++||++|++||+++
T Consensus 215 ------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 ------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 3589999999999999999999999999 99999999999999876
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.5e-42 Score=359.02 Aligned_cols=232 Identities=34% Similarity=0.441 Sum_probs=194.8
Q ss_pred hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCC
Q 045363 90 QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDT 169 (712)
Q Consensus 90 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~ 169 (712)
+|..+++|+||+|+|||+||+++||+|.+. +...++| ... ....|.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-------------------------~~~~~~~-~~~--------~~~~d~ 62 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-------------------------AIWGADF-VGG--------DPDSDC 62 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-------------------------eeeeeec-CCC--------CCCCCC
Confidence 777889999999999999999999999643 2233334 222 125678
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC-----CCcEEEeccC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD-----GVDLISISIG 243 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~dVIN~S~G 243 (712)
.+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++++++. +++|||||||
T Consensus 63 ~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g 128 (255)
T cd04077 63 NGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG 128 (255)
T ss_pred CccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCC
Confidence 899999999999864 6999999999999998875 6778899999999987 4899999999
Q ss_pred CCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCC
Q 045363 244 GPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFS 322 (712)
Q Consensus 244 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 322 (712)
... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.+
T Consensus 129 ~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------ 180 (255)
T cd04077 129 GGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------ 180 (255)
T ss_pred CCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC------------------------
Confidence 864 45566667788899999999999999765 4556778999999986432
Q ss_pred CCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeee
Q 045363 323 PRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIA 402 (712)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 402 (712)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCC
Q 045363 403 GTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGL 482 (712)
Q Consensus 403 ~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 482 (712)
+.++.||++||.. ||+|||.+|.++...
T Consensus 181 -------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~------- 208 (255)
T cd04077 181 -------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIG------- 208 (255)
T ss_pred -------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccC-------
Confidence 2467899999987 999999999998763
Q ss_pred CCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC
Q 045363 483 PGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533 (712)
Q Consensus 483 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 533 (712)
....|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 209 ----~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 ----SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ----CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 12468999999999999999999999999999999999999999975
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-43 Score=369.48 Aligned_cols=263 Identities=24% Similarity=0.193 Sum_probs=186.5
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
.+|||||||||..||+|.+.- .....+ ... .....|..+||||||||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-------------------------~~~~~~-~~~-------~~~~~d~~gHGT~vAgi 47 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-------------------------AEDDLD-SDE-------PGWTADDLGHGTAVAGL 47 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-------------------------cccccc-ccC-------CCCcCCCCCChHHHHHH
Confidence 379999999999999997531 111111 111 01156899999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-----CChHHHHHHHHHHHhCC---CcEEEeccCCCCCCCcc
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-----CADMDILAAFDDAIGDG---VDLISISIGGPSRSYFD 251 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~S~G~~~~~~~~ 251 (712)
|++...++. ...|+||+|+|+.+|++...+ ....++++||+|+++.. ++|||||||........
T Consensus 48 ia~~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~ 119 (291)
T cd04847 48 ALYGDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDG 119 (291)
T ss_pred HHcCcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCC
Confidence 997653311 227999999999999998863 45678999999999853 49999999987422111
Q ss_pred --chHHHHH-HHhhhcCceEEEecCCCCCCCCc------------cccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 252 --DSISIGS-FHAMKKGILTACSAGNDGPYQGT------------VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 252 --~~~~~a~-~~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
..+..++ ..+.++|++||+||||++..... .+..++++|+|||++.+.........
T Consensus 120 ~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--------- 190 (291)
T cd04847 120 RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--------- 190 (291)
T ss_pred CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---------
Confidence 2333333 24568999999999999976543 24556899999998755211000000
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
|.
T Consensus 191 ----------------------------------------------------------------~~-------------- 192 (291)
T cd04847 191 ----------------------------------------------------------------SA-------------- 192 (291)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
......+.||++||.. ++.+||||+|||++|.+.....
T Consensus 193 ----------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~ 230 (291)
T cd04847 193 ----------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGN 230 (291)
T ss_pred ----------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCC
Confidence 0001233499999998 9999999999999998864321
Q ss_pred ccCC-----CCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 477 ASVT-----GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 477 ~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
.... ..........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 231 AADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1000 0000122356999999999999999999999999999999999999999985
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-42 Score=356.32 Aligned_cols=253 Identities=32% Similarity=0.388 Sum_probs=188.2
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||+|||++||+|.+.. ....+| ..+. ........|..+|||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-------------------------~~~~~~-~~~~---~~~~~~~~d~~~HGT~vAg 51 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-------------------------AQWADF-DENR---RISATEVFDAGGHGTHVSG 51 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-------------------------CCceec-cCCC---CCCCCCCCCCCCcHHHHHH
Confidence 7999999999999999997531 111222 1110 1112345568899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGS 258 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~ 258 (712)
||+|+..+ +.+.||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .+.+..++
T Consensus 52 iia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~ 120 (254)
T cd07490 52 TIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAV 120 (254)
T ss_pred HHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHH
Confidence 99998642 22379999999999999988778889999999999999999999999987432 44555444
Q ss_pred HHhhh-cCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccccc
Q 045363 259 FHAMK-KGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA 337 (712)
Q Consensus 259 ~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 337 (712)
....+ +|++||+||||++......+...+++|+|||++.+.........
T Consensus 121 ~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------------------ 170 (254)
T cd07490 121 EALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------------------ 170 (254)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------------------------
Confidence 44443 69999999999998877778888999999997644210000000
Q ss_pred ccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHH
Q 045363 338 NVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417 (712)
Q Consensus 338 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 417 (712)
|
T Consensus 171 -------------------------------------------g------------------------------------ 171 (254)
T cd07490 171 -------------------------------------------G------------------------------------ 171 (254)
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred HhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecc
Q 045363 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497 (712)
Q Consensus 418 ~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 497 (712)
.......+.+|.. .....|||++|||.+|+++... ......|..++||
T Consensus 172 ----------------------~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~---------~~~~~~~~~~~GT 219 (254)
T cd07490 172 ----------------------SSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG---------ANGDGQYTRLSGT 219 (254)
T ss_pred ----------------------ccccccccCCCCC-ccCCcCceEEeccCCeEccccC---------CCCCCCeeecccH
Confidence 0111222333332 2567899999999999986532 1223569999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 498 SMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 498 SmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|||||+|||++|||+|++|+|++++||++|++||+
T Consensus 220 S~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 220 SMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 22
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-42 Score=363.08 Aligned_cols=252 Identities=24% Similarity=0.323 Sum_probs=184.3
Q ss_pred hhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCC
Q 045363 87 EKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSP 166 (712)
Q Consensus 87 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 166 (712)
...+|+.+++|+||+|+||||||+..|| |....+. +. ..+ ..+ .....
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~-----------------~~~-~~~------~~~~~ 57 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR-----------------VVL-APG------ATDPA 57 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce-----------------eec-CCC------CCCCC
Confidence 3589999999999999999999999998 6543211 00 011 111 11245
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPS 246 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~ 246 (712)
.|..|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||...
T Consensus 58 ~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 58 CDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 67889999999865 69999999999999864 5577999999999999999999999863
Q ss_pred CCC----------ccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 247 RSY----------FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 247 ~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
... ....+..++.+|.++|++||+||||++. .+|...|++|+||+++.+.. +..
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~---- 180 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR---- 180 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc----
Confidence 111 1345677788889999999999999974 46888999999999754310 000
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcE--------------
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDI-------------- 462 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI-------------- 462 (712)
......+.|++ . ..+++.|||+
T Consensus 181 ----------------------------------------~~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~ 216 (298)
T cd07494 181 ----------------------------------------RASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLM 216 (298)
T ss_pred ----------------------------------------cccccccCccc---c-cCCCCccCccccccCcCCcccccc
Confidence 00000111111 1 1256667776
Q ss_pred --EeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 463 --AAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 463 --~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|+|++++||.+|++||+++..
T Consensus 217 ~~~APG~~i~~~~~~~~-~~----~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 217 LPVPPGSQLDRSCAAFP-DG----TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cccCCCcceeccccCCC-CC----CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 479999876543210 00 1122469999999999999999999999999999999999999999998766
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-42 Score=359.66 Aligned_cols=207 Identities=29% Similarity=0.353 Sum_probs=168.1
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH----------hCC
Q 045363 165 SPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI----------GDG 234 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 234 (712)
...+..+|||||||||+|...++..+ .||||+|+|+.+|+++..+.+.+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~~~--------~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGVGV--------AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCCCc--------eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 34567899999999999987543322 899999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceE
Q 045363 235 VDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRT 313 (712)
Q Consensus 235 ~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 313 (712)
++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999987421 45667777888999999999999999776 5667778999999986432
Q ss_pred eeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 314 SGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 314 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeee
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY 473 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 473 (712)
+.++.||++|+.. ||.|||.+|.+..
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 3578899999987 9999999999886
Q ss_pred cCCccCC--CCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 474 SELASVT--GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 474 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
....... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5421100 00011223568999999999999999999999999999999999999986
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=8.2e-42 Score=361.10 Aligned_cols=277 Identities=30% Similarity=0.359 Sum_probs=202.7
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCC
Q 045363 93 SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGH 172 (712)
Q Consensus 93 ~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gH 172 (712)
++++|+||+|||||+|||++||+|.+... .+.+| .++++.....+ .+ ...|..+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~--~~~~~~~~~~~-~~----------~~~d~~~H 56 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL--FHRKIVRYDSL-SD----------TKDDVDGH 56 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc--CcccEEEeecc-CC----------CCCCCCCC
Confidence 58899999999999999999999976422 11111 34455554444 22 12278999
Q ss_pred hhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 045363 173 GTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSRSYF 250 (712)
Q Consensus 173 GThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~ 250 (712)
||||||||+|+..+.... ..+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||......
T Consensus 57 GT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~- 130 (293)
T cd04842 57 GTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG- 130 (293)
T ss_pred cchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-
Confidence 999999999987654311 1238999999999999998765 56677899999999999999999999875321
Q ss_pred cchHHHHHHHh-hh-cCceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCC
Q 045363 251 DDSISIGSFHA-MK-KGILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRK 325 (712)
Q Consensus 251 ~~~~~~a~~~a-~~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 325 (712)
......++.++ .+ +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 131 ~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------------- 188 (293)
T cd04842 131 YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------------- 188 (293)
T ss_pred cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------------
Confidence 12222233222 23 79999999999997764 56678899999999865421000
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEE
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTF 405 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 405 (712)
..|..
T Consensus 189 ----------------------~~~~~----------------------------------------------------- 193 (293)
T cd04842 189 ----------------------EGGLG----------------------------------------------------- 193 (293)
T ss_pred ----------------------ccccc-----------------------------------------------------
Confidence 00000
Q ss_pred eChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCC
Q 045363 406 VVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGD 485 (712)
Q Consensus 406 i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 485 (712)
.......++.||++||+. ++++||||+|||.+|+++..... ....
T Consensus 194 -----------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~ 238 (293)
T cd04842 194 -----------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGD 238 (293)
T ss_pred -----------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCC
Confidence 001234789999999998 89999999999999999875420 0001
Q ss_pred CCccceEeeecccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 045363 486 RRIVPFNILSGTSMACPHAAAAAAYVKSFH-----P---DWSPAAIKSALMTTAT 532 (712)
Q Consensus 486 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~lsp~~ik~~L~~TA~ 532 (712)
.....|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 239 ~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 239 TSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 223568999999999999999999999985 4 6677899999999985
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-41 Score=347.19 Aligned_cols=239 Identities=30% Similarity=0.401 Sum_probs=189.6
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|||||+|||++||+|++.. ++...+++ ... .....|..+||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-----------------------~~~~~~~~-~~~-------~~~~~~~~~HGT~vAgi 49 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-----------------------KLVPGWNF-VSN-------NDPTSDIDGHGTACAGV 49 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-----------------------CccCCccc-cCC-------CCCCCCCCCCHHHHHHH
Confidence 789999999999999997631 01111122 111 02456789999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCccchHHHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSR-SYFDDSISIG 257 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~-~~~~~~~~~a 257 (712)
|+|+..+... +.||||+|+|+.+|++...+ +...++.++++++++.+++|||||||.... ......+..+
T Consensus 50 iag~~~~~~~--------~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 121 (242)
T cd07498 50 AAAVGNNGLG--------VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNA 121 (242)
T ss_pred HHhccCCCce--------eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHH
Confidence 9998644322 38999999999999998765 677889999999999999999999998742 2345666777
Q ss_pred HHHhhh-cCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccc
Q 045363 258 SFHAMK-KGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARA 336 (712)
Q Consensus 258 ~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 336 (712)
+..+.+ +|++||+||||+|......+...+++|+||+++..
T Consensus 122 ~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------- 163 (242)
T cd07498 122 ATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------------------- 163 (242)
T ss_pred HHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------------------
Confidence 778888 99999999999998876677888999999986532
Q ss_pred cccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHH
Q 045363 337 ANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQ 416 (712)
Q Consensus 337 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 416 (712)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeec
Q 045363 417 YINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSG 496 (712)
Q Consensus 417 ~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 496 (712)
+.++.||++|+.. |++|||.++........... +.....|..++|
T Consensus 164 -----------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~----~~~~~~~~~~~G 208 (242)
T cd07498 164 -----------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAG----DYPGGGYGSFSG 208 (242)
T ss_pred -----------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccccc----cCCCCceEeeCc
Confidence 2567899999987 99999999988754321110 122346899999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 497 TSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 497 TSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
||||||+|||++|||+|++|+|++++||++|++|
T Consensus 209 TS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 209 TSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999976
No 26
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-41 Score=350.21 Aligned_cols=247 Identities=20% Similarity=0.199 Sum_probs=179.0
Q ss_pred cchhhhccCC-CCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCC
Q 045363 85 MSEKLQKRSS-KAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163 (712)
Q Consensus 85 ~~~~~~~~~~-~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~ 163 (712)
+++..+|+.. ..|+||+|+|||+|||.+||||.++... . ..+
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~----------------------------~-~~~-------- 44 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT----------------------------L-ISG-------- 44 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc----------------------------c-cCC--------
Confidence 4556899874 4599999999999999999999764210 0 111
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh----CCCcEEE
Q 045363 164 KSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG----DGVDLIS 239 (712)
Q Consensus 164 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~dVIN 239 (712)
....|..+|||||||||+|..+ + .| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||
T Consensus 45 ~~~~d~~gHGT~VAGiIaa~~n-~-------~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in 110 (277)
T cd04843 45 LTDQADSDHGTAVLGIIVAKDN-G-------IG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLE 110 (277)
T ss_pred CCCCCCCCCcchhheeeeeecC-C-------Cc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEE
Confidence 1245788999999999998742 1 12 28999999999999985 3456677777776 3567899
Q ss_pred eccCCCCCC------CccchHHHHHHHhhhcCceEEEecCCCCCCCCccc-------------cCCCceEEEceeccCce
Q 045363 240 ISIGGPSRS------YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVE-------------NVAPWIMTVAASSIDRK 300 (712)
Q Consensus 240 ~S~G~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~vitVga~~~~~~ 300 (712)
||||..... .....+..++.++.++|+++|+||||++....... ...|++|+|||++.+
T Consensus 111 ~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~-- 188 (277)
T cd04843 111 MQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST-- 188 (277)
T ss_pred ccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC--
Confidence 999986321 12334556777888999999999999986531110 112467777765321
Q ss_pred eEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhcc
Q 045363 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRL 380 (712)
Q Consensus 301 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~ 380 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccC
Q 045363 381 QGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKP 460 (712)
Q Consensus 381 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKP 460 (712)
....++.||++|+..
T Consensus 189 ---------------------------------------------------------~~~~~~~fSn~G~~v-------- 203 (277)
T cd04843 189 ---------------------------------------------------------TGHTRLAFSNYGSRV-------- 203 (277)
T ss_pred ---------------------------------------------------------CCCccccccCCCCcc--------
Confidence 001378999999987
Q ss_pred cEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHcccc
Q 045363 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----F-HPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 461 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~lsp~~ik~~L~~TA~ 532 (712)
||.|||.+|+++......... ......|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 204 di~APG~~i~s~~~~~~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 204 DVYGWGENVTTTGYGDLQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ceEcCCCCeEecCCCCccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999999765221100 11112357899999999999999999975 3 499999999999999974
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-41 Score=353.58 Aligned_cols=261 Identities=29% Similarity=0.367 Sum_probs=182.9
Q ss_pred cCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCC
Q 045363 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDG 171 (712)
Q Consensus 92 ~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~g 171 (712)
..+++|+||+|||||+|||.+||+|.+... ...+| .++ ....|..+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-------------------------~~~~~-~~~--------~~~~d~~g 47 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-------------------------TTKSF-VGG--------EDVQDGHG 47 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-------------------------cCccc-CCC--------CCCCCCCC
Confidence 457899999999999999999999975421 11233 222 23567899
Q ss_pred ChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCC--
Q 045363 172 HGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRS-- 248 (712)
Q Consensus 172 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~-- 248 (712)
|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||.....
T Consensus 48 HGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~ 118 (297)
T cd07480 48 HGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV 118 (297)
T ss_pred cHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence 999999999998644 2237999999999999997654 6777799999999999999999999985311
Q ss_pred --------CccchHHHHHHHh---------------hhcCceEEEecCCCCCCCCccc-----cCCCceEEEceeccCce
Q 045363 249 --------YFDDSISIGSFHA---------------MKKGILTACSAGNDGPYQGTVE-----NVAPWIMTVAASSIDRK 300 (712)
Q Consensus 249 --------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~ 300 (712)
.....+......+ .++|++||+||||++....... ...+++++|++....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~-- 196 (297)
T cd07480 119 DQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL-- 196 (297)
T ss_pred cccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC--
Confidence 1112222222223 6789999999999986542211 111233333322111
Q ss_pred eEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhcc
Q 045363 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRL 380 (712)
Q Consensus 301 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~ 380 (712)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccC
Q 045363 381 QGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKP 460 (712)
Q Consensus 381 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKP 460 (712)
+....|+++.+ ....||
T Consensus 197 -----------------------------------------------------------~~~~~~~~~~~----~~~~~~ 213 (297)
T cd07480 197 -----------------------------------------------------------GRTGNFSAVAN----FSNGEV 213 (297)
T ss_pred -----------------------------------------------------------CCCCCccccCC----CCCCce
Confidence 11122233222 223578
Q ss_pred cEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC---CCCC
Q 045363 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP---MKTK 537 (712)
Q Consensus 461 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~---~~~~ 537 (712)
||+|||.+|+++... ..|..++|||||||+|||++|||+|++|++++.+++.+|+..... ....
T Consensus 214 dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~ 280 (297)
T cd07480 214 DIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFA 280 (297)
T ss_pred EEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCC
Confidence 999999999988764 359999999999999999999999999999988888877733222 1111
Q ss_pred CCCCCCCCCCCCcCcc
Q 045363 538 SDDAELASGSGQINPT 553 (712)
Q Consensus 538 ~~~~~~~~G~G~in~~ 553 (712)
.......+|+|++++.
T Consensus 281 ~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 281 PGLDLPDRGVGLGLAP 296 (297)
T ss_pred CCCChhhcCCceeecC
Confidence 2236778999999875
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-40 Score=343.63 Aligned_cols=251 Identities=31% Similarity=0.454 Sum_probs=190.5
Q ss_pred CCcEEEEEcCCCCCCCCCCcCCCCCCC-CCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 98 SNIIVGLLDTGIWVESPSFNDKGFGPP-PAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 98 ~gv~VgVIDtGid~~Hp~f~~~~~~~~-~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
+||+|||||||||++||+|.+..+... ...+.+....+.+|. . ....+.| . .....+.|..+|||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~-------~~~~~~~d~~~HGT~v 69 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV---D-DIYGWNF-V-------NNDNDPMDDNGHGTHV 69 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc---c-CCCcccc-c-------CCCCCCCCCCCcHHHH
Confidence 689999999999999999987532110 001111111111110 0 0011111 1 1224567889999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHH
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSIS 255 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~ 255 (712)
||||+|...++.. +.||||+|+|+.+|++...+ ++..+++++++++++.+++|||+|||... ....+.
T Consensus 70 a~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~---~~~~~~ 138 (259)
T cd07473 70 AGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG---PSQALR 138 (259)
T ss_pred HHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC---CCHHHH
Confidence 9999998754332 38999999999999998876 78889999999999999999999999874 256677
Q ss_pred HHHHHhhhcCceEEEecCCCCCCC---Ccccc--CCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeee
Q 045363 256 IGSFHAMKKGILTACSAGNDGPYQ---GTVEN--VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPL 330 (712)
Q Consensus 256 ~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 330 (712)
.++.++.++|++||+||||++... ..++. ..+++|+||+.+..
T Consensus 139 ~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------------------- 186 (259)
T cd07473 139 DAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------------------- 186 (259)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------------------
Confidence 777888999999999999998763 22332 34788888875422
Q ss_pred EecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhh
Q 045363 331 TNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEV 410 (712)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 410 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccc
Q 045363 411 GIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP 490 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 490 (712)
+.++.||++|+. +||+.|||.++++.... ..
T Consensus 187 -----------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~ 217 (259)
T cd07473 187 -----------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GG 217 (259)
T ss_pred -----------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------Cc
Confidence 356678999985 46999999999996543 35
Q ss_pred eEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 491 FNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 491 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 218 ~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 218 YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999985
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=9.3e-40 Score=332.77 Aligned_cols=226 Identities=35% Similarity=0.488 Sum_probs=186.1
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||+||+.+||+|.+.. ....+| .... .....|..+|||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-------------------------~~~~~~-~~~~------~~~~~~~~~HGT~vA~ 48 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-------------------------VGGANF-TGDD------NNDYQDGNGHGTHVAG 48 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-------------------------cCcccc-cCCC------CCCCCCCCCCHHHHHH
Confidence 7999999999999999997531 122223 2211 0345678899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
+|++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.+++|||||||... ....+..+
T Consensus 49 ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~ 116 (229)
T cd07477 49 IIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREA 116 (229)
T ss_pred HHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHH
Confidence 999986432 238999999999999998766 66789999999999999999999999863 33455666
Q ss_pred HHHhhhcCceEEEecCCCCCCCCcc--ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccc
Q 045363 258 SFHAMKKGILTACSAGNDGPYQGTV--ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGAR 335 (712)
Q Consensus 258 ~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~ 335 (712)
+..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 117 ~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------- 159 (229)
T cd07477 117 IKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------- 159 (229)
T ss_pred HHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------------------
Confidence 6788899999999999999776554 7788999999986533
Q ss_pred ccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHH
Q 045363 336 AANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKID 415 (712)
Q Consensus 336 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 415 (712)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeee
Q 045363 416 QYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILS 495 (712)
Q Consensus 416 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 495 (712)
+.++.||++|+.. |+.|||.+|+++... ..|..++
T Consensus 160 ------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~ 194 (229)
T cd07477 160 ------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLS 194 (229)
T ss_pred ------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEc
Confidence 2456789999876 999999999998764 3588999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 496 GTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 496 GTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 195 GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 195 GTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999986
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.4e-41 Score=353.46 Aligned_cols=272 Identities=34% Similarity=0.485 Sum_probs=210.3
Q ss_pred EEEEEcCCCCCCCCCCc-CCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 101 IVGLLDTGIWVESPSFN-DKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 101 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
+|||||+|||++||+|. ..- ...++.+.+.| .++. .......|..+|||||||+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~--------------------~~~~~~~~~~~-~~~~----~~~~~~~~~~~HGT~va~i 55 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF--------------------IWSKVPGGYNF-VDGN----PNPSPSDDDNGHGTHVAGI 55 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE--------------------EEEEEEEEEET-TTTB----STTTSSSTSSSHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc--------------------ccccccceeec-cCCC----CCcCccccCCCccchhhhh
Confidence 69999999999999997 321 12234445666 3331 1124566788999999999
Q ss_pred hccCC-CCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCC---CCCccchH
Q 045363 180 AAGET-VKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI-GDGVDLISISIGGPS---RSYFDDSI 254 (712)
Q Consensus 180 iag~~-~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~S~G~~~---~~~~~~~~ 254 (712)
|+|.. .++. ...|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... .+...+.+
T Consensus 56 i~~~~~~~~~--------~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 56 IAGNGGNNGP--------GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHHTTSSSSS--------SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred cccccccccc--------ccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 99997 2221 12899999999999998877677888999999999 899999999999831 12233445
Q ss_pred HHHHHHhhhcCceEEEecCCCCCCCCc---cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeE
Q 045363 255 SIGSFHAMKKGILTACSAGNDGPYQGT---VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLT 331 (712)
Q Consensus 255 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~ 331 (712)
..+...+.++|+++|+||||++..... .+...+++|+||+++..
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------- 174 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------- 174 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------
T ss_pred ccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------------
Confidence 566668889999999999999876643 55566888999876422
Q ss_pred ecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhH
Q 045363 332 NGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVG 411 (712)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g 411 (712)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccce
Q 045363 412 IKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPF 491 (712)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 491 (712)
+.++.||++|+.. .++++||||+|||.+|++.++.. ....|
T Consensus 175 ----------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~----------~~~~~ 215 (282)
T PF00082_consen 175 ----------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS----------DRGSY 215 (282)
T ss_dssp ----------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT----------ESEEE
T ss_pred ----------------------------ccccccccccccc-ccccccccccccccccccccccc----------ccccc
Confidence 2567899997543 27899999999999998888641 11458
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-CCCCCCCCCCCCcCccccCC
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-SDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~~~~~~~~G~G~in~~~A~~ 557 (712)
..++|||||||+|||++|||+|++|+|++++||.+|++||.+.... ....+..||||+||+++|++
T Consensus 216 ~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 216 TSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred cccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 8999999999999999999999999999999999999999999832 23356788999999999874
No 31
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-41 Score=344.51 Aligned_cols=309 Identities=25% Similarity=0.361 Sum_probs=243.8
Q ss_pred chHHHHHHHHHHhCCcccc--cc----------------ceEEEec---ceeeeEEEEcCHHHHHHhhcCCCeEEEEeCe
Q 045363 12 AVKEHHSLLTTAIGDEKLA--RE----------------SKIRSYG---KSFNGFVARLLPHEAKRLSEEESVVSVFENT 70 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~--~~----------------~v~~~y~---~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~ 70 (712)
-+..|.+|+++++...... .. .+.+.|. .+|+|+.-..+.+-+..+++.|-+..++++.
T Consensus 95 ~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~ 174 (501)
T KOG1153|consen 95 KISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDS 174 (501)
T ss_pred HHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeeeeccCcceeeccccc
Confidence 6778999999998632110 00 1333333 3888999999999999999999999999886
Q ss_pred eeec--------ccCCCccccccchh-----hhcc----CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccc
Q 045363 71 RRKL--------HTTRTWDFLGMSEK-----LQKR----SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCV 133 (712)
Q Consensus 71 ~~~~--------~~~~s~~~~~~~~~-----~~~~----~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~ 133 (712)
..+. |..-+|.+..+... .-|- .-..|+||...|+||||+.+||||.++. .|- .|.
T Consensus 175 ~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegRa------~wG-a~i 247 (501)
T KOG1153|consen 175 VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGRA------IWG-ATI 247 (501)
T ss_pred ccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccce------ecc-ccc
Confidence 6543 44556766655321 1221 2447999999999999999999998652 221 110
Q ss_pred cCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEee
Q 045363 134 TGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC 213 (712)
Q Consensus 134 ~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 213 (712)
- .. ....|++||||||||+|+++. .|||.+++|+++||+
T Consensus 248 -----------------~-~~---------~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl 286 (501)
T KOG1153|consen 248 -----------------P-PK---------DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVL 286 (501)
T ss_pred -----------------C-CC---------CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEe
Confidence 0 11 245689999999999999986 799999999999999
Q ss_pred cCCC-CChHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-Ccc
Q 045363 214 WSGG-CADMDILAAFDDAIGD---------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTV 282 (712)
Q Consensus 214 ~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~ 282 (712)
+++| +..+++++++|++++. +..|.|||+|+.. .-++..|+..|.+.|+++++||||+..+. .+.
T Consensus 287 ~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~S 362 (501)
T KOG1153|consen 287 RSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMAVNAASERGIHFAVAAGNEHEDACNSS 362 (501)
T ss_pred ccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccC
Confidence 9988 8999999999999986 5789999999864 45667777899999999999999998664 566
Q ss_pred ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccc
Q 045363 283 ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKG 362 (712)
Q Consensus 283 ~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 362 (712)
|+.+..+|||||+|..
T Consensus 363 Pass~~aITVGAst~~---------------------------------------------------------------- 378 (501)
T KOG1153|consen 363 PASSKKAITVGASTKN---------------------------------------------------------------- 378 (501)
T ss_pred cccccccEEecccccc----------------------------------------------------------------
Confidence 6788999999998643
Q ss_pred eEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcc
Q 045363 363 KIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFI 442 (712)
Q Consensus 363 kivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 442 (712)
+.+
T Consensus 379 -----------------------------------------------------------------------------D~i 381 (501)
T KOG1153|consen 379 -----------------------------------------------------------------------------DTI 381 (501)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 378
Q ss_pred ccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC-----
Q 045363 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD----- 517 (712)
Q Consensus 443 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----- 517 (712)
|.||+||++. ||-|||.+|+|+|.+.. ..-...||||||+|||||++|.+++++|.
T Consensus 382 A~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f 442 (501)
T KOG1153|consen 382 AFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSF 442 (501)
T ss_pred hhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHh
Confidence 9999999999 99999999999998631 34689999999999999999999999883
Q ss_pred ----CCHHHHHHHHHcccc
Q 045363 518 ----WSPAAIKSALMTTAT 532 (712)
Q Consensus 518 ----lsp~~ik~~L~~TA~ 532 (712)
.||.++|..|..-..
T Consensus 443 ~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 443 ANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhccCChHHhhhhhhcccc
Confidence 378888887776443
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-40 Score=337.27 Aligned_cols=157 Identities=25% Similarity=0.314 Sum_probs=118.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
+++|+|||||||||++||+|.+. +...++| ...............|..+|||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-------------------------i~~~~~~-~~~~~~~~~~~~~~~d~~gHGT~v 55 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-------------------------IIGGKSF-SPYEGDGNKVSPYYVSADGHGTAM 55 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-------------------------cccCCCC-CCCCCCcccCCCCCCCCCCcHHHH
Confidence 78999999999999999999753 1112222 111100001112235688999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-------CChHHHHHHHHHHHhCCCcEEEeccCCCCCC-
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-------CADMDILAAFDDAIGDGVDLISISIGGPSRS- 248 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~- 248 (712)
||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.....
T Consensus 56 AgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~ 117 (247)
T cd07491 56 ARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPED 117 (247)
T ss_pred HHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccc
Confidence 99995 679999999999998643 4567899999999999999999999987421
Q ss_pred --CccchHHHHHHHhhhcCceEEEecCCCCCCCC-c--cccCCCceEEEceecc
Q 045363 249 --YFDDSISIGSFHAMKKGILTACSAGNDGPYQG-T--VENVAPWIMTVAASSI 297 (712)
Q Consensus 249 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~ 297 (712)
.....+..++.+|.++|++||+||||+|.... . .+...|++|+|||++.
T Consensus 118 ~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 118 NDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 13567778888999999999999999997654 2 3456789999998754
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.4e-39 Score=342.44 Aligned_cols=253 Identities=28% Similarity=0.315 Sum_probs=174.6
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
.|+|||||||||++||+|++..... .+ .+.....+ .........+.....|..+|||||||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~--------------~~~~~~~~-~~~~~~~~~~~~~~~d~~gHGT~vAg 61 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK--------------NLVPKGGY-DGKEAGETGDINDIVDKLGHGTAVAG 61 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc--------------ccccCCCc-CCccccccCCCCcCCCCCCcHhHHHH
Confidence 4899999999999999998531100 00 00000000 00000001122345677999999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCC-ChHHHHHHHHHHHhCCCcEEEeccCCCCCCC--------
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGC-ADMDILAAFDDAIGDGVDLISISIGGPSRSY-------- 249 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~-------- 249 (712)
+|+|+... .||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||......
T Consensus 62 iia~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 62 QIAANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HHhcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 99987432 59999999999999987764 8889999999999999999999999763211
Q ss_pred ccchHHHHHHHhhhcCceEEEecCCCCCCCCc----------------------cccCCCceEEEceeccCceeEEEEEe
Q 045363 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGT----------------------VENVAPWIMTVAASSIDRKFVTAVKL 307 (712)
Q Consensus 250 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~ 307 (712)
....+..++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~----------- 198 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD----------- 198 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC-----------
Confidence 12345566667888999999999999865311 112223344444332
Q ss_pred CCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEE
Q 045363 308 GNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIV 387 (712)
Q Consensus 308 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~ 387 (712)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC
Q 045363 388 AVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL 467 (712)
Q Consensus 388 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 467 (712)
..+.++.||++|+.. +|++|||.
T Consensus 199 --------------------------------------------------~~~~~~~~S~~g~~~-------~~~~apG~ 221 (294)
T cd07482 199 --------------------------------------------------NNGNLSSFSNYGNSR-------IDLAAPGG 221 (294)
T ss_pred --------------------------------------------------CCCCcCccccCCCCc-------ceEECCCC
Confidence 234677899998753 49999999
Q ss_pred cEEeeecCCc--c-CCC------CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHcc
Q 045363 468 DILAAYSELA--S-VTG------LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSP-AAIKSALMTT 530 (712)
Q Consensus 468 ~I~sa~~~~~--~-~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp-~~ik~~L~~T 530 (712)
++........ . ... .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 222 DFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 8853221100 0 000 000122356899999999999999999999999999999 9999999986
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.4e-39 Score=344.66 Aligned_cols=250 Identities=20% Similarity=0.201 Sum_probs=181.4
Q ss_pred cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC
Q 045363 85 MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK 164 (712)
Q Consensus 85 ~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~ 164 (712)
++...+|+.+++|+||+|+|||||||+.||+|.+.... ...++| ..+. . ..
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-----------------------~~~~~~-~~~~----~-~~ 76 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-----------------------EASYDF-NDND----P-DP 76 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-----------------------cccccc-cCCC----C-CC
Confidence 34568999999999999999999999999999754211 011122 1111 0 01
Q ss_pred CC--CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEecc
Q 045363 165 SP--VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISI 242 (712)
Q Consensus 165 ~~--~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~ 242 (712)
.+ .|..+|||||||||+|+..+..+ ..||||+|+|+.+|+++.. .....+..++.++.+ .++||||||
T Consensus 77 ~~~~~~~~gHGT~vAgiiag~~~~~~~--------~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~ 146 (297)
T cd04059 77 TPRYDDDNSHGTRCAGEIAAVGNNGIC--------GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSW 146 (297)
T ss_pred CCccccccccCcceeeEEEeecCCCcc--------cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCC
Confidence 22 27889999999999998644221 2899999999999998765 334455566666554 469999999
Q ss_pred CCCCCCC----ccchHHHHHHHhhh-----cCceEEEecCCCCCCCCc----cccCCCceEEEceeccCceeEEEEEeCC
Q 045363 243 GGPSRSY----FDDSISIGSFHAMK-----KGILTACSAGNDGPYQGT----VENVAPWIMTVAASSIDRKFVTAVKLGN 309 (712)
Q Consensus 243 G~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~ 309 (712)
|...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 147 g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~----------- 215 (297)
T cd04059 147 GPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN----------- 215 (297)
T ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-----------
Confidence 9763221 12223333334332 699999999999973322 12345788998886432
Q ss_pred CceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEe
Q 045363 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAV 389 (712)
Q Consensus 310 g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~ 389 (712)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCc-
Q 045363 390 DAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLD- 468 (712)
Q Consensus 390 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~- 468 (712)
+.++.||++|+.. +++|||..
T Consensus 216 --------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~ 237 (297)
T cd04059 216 --------------------------------------------------GVRASYSEVGSSV--------LASAPSGGS 237 (297)
T ss_pred --------------------------------------------------CCCcCCCCCCCcE--------EEEecCCCC
Confidence 3567899999988 89999987
Q ss_pred ------EEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 469 ------ILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 469 ------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|+++... .....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 238 ~~~~~~i~~~~~~----------~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 238 GNPEASIVTTDLG----------GNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCceEeCCCC----------CCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 5555432 11245789999999999999999999999999999999999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-38 Score=322.40 Aligned_cols=221 Identities=23% Similarity=0.290 Sum_probs=172.5
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||||||++||+|.+.... +..| .. ..+ ..+.....|..+|||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~-------~~-~~~--------~~~~~~~~d~~gHGT~vAg 52 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVT-------ID-LEI--------IVVSAEGGDKDGHGTACAG 52 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------cccc-------cc-ccc--------ccCCCCCCCCCCcHHHHHH
Confidence 799999999999999999764211 0000 00 000 0112345678899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
||++. +|+++|+.+|+++..+ +...++++||+|+++++++|||||||..... ....+..+
T Consensus 53 iia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~ 113 (222)
T cd07492 53 IIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKEL 113 (222)
T ss_pred HHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHH
Confidence 99754 5999999999998776 7888899999999999999999999987532 23456667
Q ss_pred HHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccccc
Q 045363 258 SFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA 337 (712)
Q Consensus 258 ~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 337 (712)
+.++.++|+++|+||||++.... .+...+++|+|++.+..+
T Consensus 114 ~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~-------------------------------------- 154 (222)
T cd07492 114 LEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD-------------------------------------- 154 (222)
T ss_pred HHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC--------------------------------------
Confidence 77888889999999999986543 367778999998754220
Q ss_pred ccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHH
Q 045363 338 NVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417 (712)
Q Consensus 338 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 417 (712)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecc
Q 045363 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497 (712)
Q Consensus 418 ~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 497 (712)
.. +.+++ ++++.|||.+|+++.+. ..|..++||
T Consensus 155 -----------------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GT 187 (222)
T cd07492 155 -----------------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGN 187 (222)
T ss_pred -----------------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccH
Confidence 01 11233 34999999999998764 358999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 498 SMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 498 SmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 188 S~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 188 SFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.4e-38 Score=326.49 Aligned_cols=242 Identities=29% Similarity=0.381 Sum_probs=185.2
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhH
Q 045363 96 AQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTH 175 (712)
Q Consensus 96 ~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGTh 175 (712)
+|+||+|+|||+||+.+||+|.+...... .+ .... ........|..+||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~-------------------------~~-~~~~---~~~~~~~~~~~~HGT~ 51 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS-------------------------YY-VAVN---DAGYASNGDGDSHGTH 51 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc-------------------------cc-cccc---cccCCCCCCCCChHHH
Confidence 69999999999999999999986422100 00 0000 0001244568899999
Q ss_pred HHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCC-----
Q 045363 176 TSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSRS----- 248 (712)
Q Consensus 176 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~----- 248 (712)
|||+|+|+..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||.....
T Consensus 52 vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~ 122 (267)
T cd04848 52 VAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVST 122 (267)
T ss_pred HHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccccc
Confidence 99999998644 2238999999999999998764 6667889999999999999999999987422
Q ss_pred -------CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc---------ccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 249 -------YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV---------ENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 249 -------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
.....+...+..+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------- 189 (267)
T cd04848 123 TYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------- 189 (267)
T ss_pred chhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------------
Confidence 1445566677788899999999999998654333 23457888888865431
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcccc--ccCCCCCcCCCCcccCcEEeCCCcEE
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIAS--FSSRGPQKITLNILKPDIAAPGLDIL 470 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~--fSs~Gp~~~~~~~lKPDI~APG~~I~ 470 (712)
.... ||++|+.. -.++++|||.+|.
T Consensus 190 ------------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~ 216 (267)
T cd04848 190 ------------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIY 216 (267)
T ss_pred ------------------------------------------------Ccccccccccchhh-----hhheeecCcCcee
Confidence 2222 47777644 2347999999999
Q ss_pred eeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 471 AAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 471 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
++.+. ....|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 217 ~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 217 STDPD-----------GGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ecccC-----------CCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 98762 1145889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=319.70 Aligned_cols=338 Identities=25% Similarity=0.360 Sum_probs=253.7
Q ss_pred HHHHHHHHHHhCCccc------cccceEEEecceeeeEEEEcC-----HHHHHHhhcCCCeEEEEeCeeeeccc------
Q 045363 14 KEHHSLLTTAIGDEKL------ARESKIRSYGKSFNGFVARLL-----PHEAKRLSEEESVVSVFENTRRKLHT------ 76 (712)
Q Consensus 14 ~~h~~~~~~~~~~~~~------~~~~v~~~y~~~~ng~s~~l~-----~~~i~~l~~~p~V~~V~~~~~~~~~~------ 76 (712)
..|+..+++.+....- .+...--+|-.-|.-+-++-. .-+++.|.-.|.|+.|.|.+....-.
T Consensus 63 k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~ 142 (1033)
T KOG4266|consen 63 KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGK 142 (1033)
T ss_pred hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccC
Confidence 4677777777753220 012223355556655555443 23578899999999999876643210
Q ss_pred ---------------C--------------CCccccc--------cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCC
Q 045363 77 ---------------T--------------RTWDFLG--------MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119 (712)
Q Consensus 77 ---------------~--------------~s~~~~~--------~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~ 119 (712)
+ .++.+.. +.++.+|+.|++|++|+|||.|||+...||-|+.-
T Consensus 143 ~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv 222 (1033)
T KOG4266|consen 143 KRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV 222 (1033)
T ss_pred CCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccch
Confidence 0 0011110 13468999999999999999999999999999742
Q ss_pred CCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceee
Q 045363 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTAR 199 (712)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~ 199 (712)
..-.++ .+. ..-.|.-||||.|||+|||... ..
T Consensus 223 --------------------------KERTNW-TNE--------~tLdD~lgHGTFVAGvia~~~e------------c~ 255 (1033)
T KOG4266|consen 223 --------------------------KERTNW-TNE--------DTLDDNLGHGTFVAGVIAGRNE------------CL 255 (1033)
T ss_pred --------------------------hhhcCC-cCc--------cccccCcccceeEeeeeccchh------------hc
Confidence 111122 221 3455788999999999998742 27
Q ss_pred eecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCC
Q 045363 200 GGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPY 278 (712)
Q Consensus 200 GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 278 (712)
|.||+++|+++|||.+.. ...+..++|+.||+....||+|+|+|++ ++.+.++-.-+.+...+++++|.|+||+||-
T Consensus 256 gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPL 333 (1033)
T KOG4266|consen 256 GFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPL 333 (1033)
T ss_pred ccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcc
Confidence 999999999999998866 7889999999999999999999999998 4666676666667788999999999999998
Q ss_pred CCccccCCC--ceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCC
Q 045363 279 QGTVENVAP--WIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLS 356 (712)
Q Consensus 279 ~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~ 356 (712)
.++..+.+. .||.||..
T Consensus 334 YGTLNNPaDQsDViGVGGI------------------------------------------------------------- 352 (1033)
T KOG4266|consen 334 YGTLNNPADQSDVIGVGGI------------------------------------------------------------- 352 (1033)
T ss_pred eeecCCcccccceeeeccc-------------------------------------------------------------
Confidence 877766542 34444321
Q ss_pred CCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeC
Q 045363 357 MKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNT 436 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~ 436 (712)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCcC----CCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHH
Q 045363 437 STAPFIASFSSRGPQKI----TLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVK 512 (712)
Q Consensus 437 ~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 512 (712)
.-.+.+|.|||||-+.. ..||+||||++-|.+|....-. .+-..+||||.|+|.|||+++||.
T Consensus 353 dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLv 419 (1033)
T KOG4266|consen 353 DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLV 419 (1033)
T ss_pred cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeeeEe
Confidence 22358999999997654 4799999999999998766432 346789999999999999999997
Q ss_pred h----hCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 513 S----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 513 ~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
+ +.--+.|+.+|++|+..|.+++.. .-+.||+|++|+.++++
T Consensus 420 S~~~qk~dl~NPASmKQaLiegA~kLpg~---NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 420 SVEAQKKDLLNPASMKQALIEGAAKLPGP---NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeheehhhccCHHHHHHHHHhHHhhCCCC---chhhccCcchhHHHHHH
Confidence 7 223478999999999999999885 45789999999998876
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.2e-33 Score=282.10 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=140.9
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHH--HhCCCcEEEeccC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDA--IGDGVDLISISIG 243 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~S~G 243 (712)
..|.++|||||||||||. .|++|+++|+..++... ....+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999987 45679999987655321 233466777888 5679999999999
Q ss_pred CCCCCC------ccchHHHHHHHhhhc-CceEEEecCCCCCCC-----CccccCCCceEEEceeccCceeEEEEEeCCCc
Q 045363 244 GPSRSY------FDDSISIGSFHAMKK-GILTACSAGNDGPYQ-----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGM 311 (712)
Q Consensus 244 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 311 (712)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 874221 223455555565555 999999999999743 2234567889999987643110
Q ss_pred eEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecC
Q 045363 312 RTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDA 391 (712)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~ 391 (712)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCC--CCCcCCCCcccCcEEeCCCcE
Q 045363 392 PTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSR--GPQKITLNILKPDIAAPGLDI 469 (712)
Q Consensus 392 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~--Gp~~~~~~~lKPDI~APG~~I 469 (712)
...+.||++ +|+. ++..||||+|||++|
T Consensus 165 ------------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 165 ------------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred ------------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 023445554 4444 788999999999999
Q ss_pred EeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHccc
Q 045363 470 LAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWS------PAAIKSALMTTA 531 (712)
Q Consensus 470 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls------p~~ik~~L~~TA 531 (712)
++ +. ..|..++|||||||||||++|||++++|++. -.++|.+|++|+
T Consensus 195 ~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 195 NL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 98 21 2478999999999999999999999988766 445677777653
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-32 Score=299.99 Aligned_cols=238 Identities=27% Similarity=0.343 Sum_probs=183.0
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCC-C--CChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSG-G--CADMDILAAFDDAIGDGVDLISISIGGP 245 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~ 245 (712)
...|||||||||+|+..+.. ...||||+|+|+++++.+.. | .+...+.+|+..+++..+||||||||-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 35699999999999986532 23799999999999998753 2 4566789999999999999999999987
Q ss_pred C-CCCccchHHHHHHHhhhcCceEEEecCCCCCCCCcccc---CCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 246 S-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVEN---VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 246 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
. -+.....++..-+.+.++|+++|+||||+||...+++. ....+|.|||.-.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 3 33345555555555668899999999999999877664 34578888874221000
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
...|.+.
T Consensus 441 ---~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ---QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred ---Hhhhhhh----------------------------------------------------------------------
Confidence 0000000
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
. .-......+|||||+. ||-+--.|+|||+.|.+--.
T Consensus 448 --------------e--------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~------- 484 (1304)
T KOG1114|consen 448 --------------E--------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ------- 484 (1304)
T ss_pred --------------c--------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCch-------
Confidence 0 1123467889999999 99999999999999865421
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
..-..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. ..+.+|.|+|++++|.+
T Consensus 485 ----~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i---d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 485 ----YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI---DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc---chhccCcceeehhHHHH
Confidence 1113457899999999999999999976 467899999999999999999886 78999999999999987
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=8.1e-31 Score=267.56 Aligned_cols=234 Identities=36% Similarity=0.495 Sum_probs=176.4
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|+|||+|++++||+|.... .... ...++ ... ........+..+||||||++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~-------------~~~~~-~~~----~~~~~~~~~~~~HGt~va~~ 53 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD-------------GGNDD-DDN----ENGPTDPDDGNGHGTHVAGI 53 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc-------------ccccc-ccC----cCCCCCCCCCCCcHHHHHHH
Confidence 689999999999999872110 0000 00011 000 00112455788999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH-hCCCcEEEeccCCCCCCCccchHHHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAI-GDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
|++...+... .|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||..... ....+...
T Consensus 54 i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~ 123 (241)
T cd00306 54 IAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEA 123 (241)
T ss_pred HhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHH
Confidence 9998644221 7999999999999998766 67788999999999 89999999999987533 34455666
Q ss_pred HHHhhhc-CceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEec
Q 045363 258 SFHAMKK-GILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNG 333 (712)
Q Consensus 258 ~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~ 333 (712)
+..+.++ |+++|+||||.+.... ..+...+++|+||+++...
T Consensus 124 ~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------- 169 (241)
T cd00306 124 IDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------- 169 (241)
T ss_pred HHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------
Confidence 6677777 9999999999998776 4677889999999875431
Q ss_pred ccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHH
Q 045363 334 ARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIK 413 (712)
Q Consensus 334 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~ 413 (712)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCceEEEEEeeeeeCCCCCccc-cccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceE
Q 045363 414 IDQYINSTKNPQAVIYKTRVVNTSTAPFIA-SFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492 (712)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 492 (712)
... .++++|+ |||+.|||.++.... ......+.
T Consensus 170 ---------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~-----------~~~~~~~~ 203 (241)
T cd00306 170 ---------------------------TPASPSSNGGA--------GVDIAAPGGDILSSP-----------TTGGGGYA 203 (241)
T ss_pred ---------------------------CccCCcCCCCC--------CceEEeCcCCccCcc-----------cCCCCCeE
Confidence 111 3344443 569999999987751 12224689
Q ss_pred eeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 493 ~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
.++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 204 ~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 204 TLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred eeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-23 Score=238.54 Aligned_cols=268 Identities=29% Similarity=0.443 Sum_probs=197.0
Q ss_pred hhhccC--CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC-
Q 045363 88 KLQKRS--SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK- 164 (712)
Q Consensus 88 ~~~~~~--~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~- 164 (712)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++| .++. ..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-------------------------~~~~-~~~~------~~~ 177 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-------------------------GGDF-VDGD------PEP 177 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-------------------------cccc-ccCC------CCC
Confidence 468887 99999999999999999999999764210 0122 2221 01
Q ss_pred CCCCCCCChhHHHHHhccCC-CCCCcccccccceeeeecCCCeEEEEEeecCC-C-CChHHHHHHHHHHHhCC--CcEEE
Q 045363 165 SPVDTDGHGTHTSSTAAGET-VKGASLYGIAQGTARGGVPSARIAMYKVCWSG-G-CADMDILAAFDDAIGDG--VDLIS 239 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~-~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~dVIN 239 (712)
...|..+|||||++++++.. .+. ....|+||+++++.++++... + ....+++++|+++++.+ +++||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~~~--------~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in 249 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFDNG--------AGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVIN 249 (508)
T ss_pred CCCCCCCCcceeeeeeeeecccCC--------CccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEE
Confidence 25688999999999999842 111 113899999999999999865 5 66777899999999999 99999
Q ss_pred eccCCCCCCCccchHHHHHHHhhhcC-ceEEEecCCCCCCCCc----cccCC--CceEEEceeccCceeEEEEEeCCCce
Q 045363 240 ISIGGPSRSYFDDSISIGSFHAMKKG-ILTACSAGNDGPYQGT----VENVA--PWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 240 ~S~G~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
||+|..........+..++..++..| +++|+|+||.+..... .+... +.+++|++.+.
T Consensus 250 ~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 250 LSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred ecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 99998511233455555666777777 9999999999866521 11211 24455544321
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEe-
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILA- 471 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s- 471 (712)
.+.++.||++|... ..+++|||.+|.+
T Consensus 315 ----------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~ 342 (508)
T COG1404 315 ----------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSL 342 (508)
T ss_pred ----------------------------------------------CCccccccccCCCC------CcceeCCCcccccc
Confidence 13678899999751 2299999999988
Q ss_pred ----eecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHccccC--CCCCCCCCCCC
Q 045363 472 ----AYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP-DWSPAAIKSALMTTATP--MKTKSDDAELA 544 (712)
Q Consensus 472 ----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~lsp~~ik~~L~~TA~~--~~~~~~~~~~~ 544 (712)
.+.+ +. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....
T Consensus 343 ~~~~~~~~---------~~--~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 407 (508)
T COG1404 343 SAVNTLPG---------DG--ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG----VDNL 407 (508)
T ss_pred ccceeeeC---------Cc--cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc----cccc
Confidence 3332 11 2489999999999999999999999999 89999999999998884 222 4566
Q ss_pred CCCCCcCccccCC
Q 045363 545 SGSGQINPTKAVH 557 (712)
Q Consensus 545 ~G~G~in~~~A~~ 557 (712)
++.|..+...+..
T Consensus 408 ~~~~~~~~~~~~~ 420 (508)
T COG1404 408 VGGGLANLDAAAT 420 (508)
T ss_pred cccCccccccccc
Confidence 7777766666554
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-21 Score=194.93 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=183.6
Q ss_pred chhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCC
Q 045363 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKS 165 (712)
Q Consensus 86 ~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~ 165 (712)
+...+|..+++|++|+++|+|.||||.|||++.+ ..--.+++| .... +.+++.
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n-----------------------ynaeasydf-ssnd---pfpypr 201 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-----------------------YNAEASYDF-SSND---PFPYPR 201 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc-----------------------cCceeeccc-ccCC---CCCCCc
Confidence 4568999999999999999999999999999732 112223344 2221 111222
Q ss_pred CCC--CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh-CCCcEEEecc
Q 045363 166 PVD--TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG-DGVDLISISI 242 (712)
Q Consensus 166 ~~d--~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~S~ 242 (712)
..| .+.|||.|||-+++..+|+... .|||.+.++..+|+++. -+-.|+++|-..-.. ..++|.+-||
T Consensus 202 ytddwfnshgtrcagev~aardngicg--------vgvaydskvagirmldq--pymtdlieansmghep~kihiysasw 271 (629)
T KOG3526|consen 202 YTDDWFNSHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASW 271 (629)
T ss_pred ccchhhhccCccccceeeeeccCCcee--------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEeccc
Confidence 223 5789999999999888776543 79999999999999875 344455554322211 3578999999
Q ss_pred CCCCCC-Cccch---HHHHHHHhh-----hcCceEEEecCCCCCCCCcc-c--cCCCceEEEceeccCceeEEEEEeCCC
Q 045363 243 GGPSRS-YFDDS---ISIGSFHAM-----KKGILTACSAGNDGPYQGTV-E--NVAPWIMTVAASSIDRKFVTAVKLGNG 310 (712)
Q Consensus 243 G~~~~~-~~~~~---~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~~-~--~~~p~vitVga~~~~~~~~~~~~~~~g 310 (712)
|..... ..+.+ ...|+.+-+ ..|-+.|.|.|..|....-. . ..+-|.|++-+.-.+.
T Consensus 272 gptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg----------- 340 (629)
T KOG3526|consen 272 GPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG----------- 340 (629)
T ss_pred CcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC-----------
Confidence 976322 22222 222222222 23678999999877543211 1 1223444443221110
Q ss_pred ceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEec
Q 045363 311 MRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVD 390 (712)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~ 390 (712)
+ +..+.+.|.+
T Consensus 341 ~-------------------------------nahydescss-------------------------------------- 351 (629)
T KOG3526|consen 341 E-------------------------------NAHYDESCSS-------------------------------------- 351 (629)
T ss_pred c-------------------------------cccccchhhH--------------------------------------
Confidence 0 1111122221
Q ss_pred CCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEE
Q 045363 391 APTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDIL 470 (712)
Q Consensus 391 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 470 (712)
-..+.||+-|.++ +- | +-
T Consensus 352 -------------------------------------------------tlastfsng~rnp--------et---g--va 369 (629)
T KOG3526|consen 352 -------------------------------------------------TLASTFSNGGRNP--------ET---G--VA 369 (629)
T ss_pred -------------------------------------------------HHHHHhhcCCcCC--------Cc---c--ee
Confidence 1345577655443 11 1 11
Q ss_pred eeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-------------
Q 045363 471 AAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK------------- 537 (712)
Q Consensus 471 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~------------- 537 (712)
.+ +-.+.....-||||.|+|-.||+.||.++++|.|+..+++.+-.-|.++..-.
T Consensus 370 tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngv 437 (629)
T KOG3526|consen 370 TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGV 437 (629)
T ss_pred ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEecccc
Confidence 11 22224466789999999999999999999999999999998877777664322
Q ss_pred CCCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhccCCC
Q 045363 538 SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGY 578 (712)
Q Consensus 538 ~~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~~g~ 578 (712)
+-..+.-||+|.+|+.+.+....-+...+.. |-|..|.
T Consensus 438 glefnhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 438 GLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ceeeecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 0114567999999998877654444444443 4576665
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4e-17 Score=176.81 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=80.3
Q ss_pred eeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CccchHHHHHHHhhhcCceEEE
Q 045363 197 TARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGD---GVDLISISIGGPSRS---YFDDSISIGSFHAMKKGILTAC 270 (712)
Q Consensus 197 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~S~G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 270 (712)
...||||+|+|+.|++.+.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 34899999999999997642 45677888888887 999999999987432 1235667778888999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEEceeccCc
Q 045363 271 SAGNDGPYQG-----------TVENVAPWIMTVAASSIDR 299 (712)
Q Consensus 271 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 299 (712)
|+||+|.... ..+...|+|++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999997653 3467889999999987653
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.99 E-value=3.7e-09 Score=99.17 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=85.0
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI---- 395 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~---- 395 (712)
....+++|.+. |....+...+++||||||+|+.| .. +++.+||.|+|++++.....
T Consensus 25 ~~~~~lv~~g~--------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~-~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAGL--------------GTPEDFEGKDVKGKIALIQRGEITFVEKIA-NAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEccC--------------CchhccCCCCccceEEEEECCCCCHHHHHH-HHHHCCCeEEEEeecCCCcccccC
Confidence 45678887643 44555666789999999999987 55 88999999999999876542
Q ss_pred ccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCc
Q 045363 396 AIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQK 452 (712)
Q Consensus 396 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~ 452 (712)
.....+|++.|+.++|..|+.|+.+ .+++.+..+....+.+.++.||||||..
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 1235799999999999999999987 5666666554456667899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.96 E-value=6.4e-09 Score=95.40 Aligned_cols=115 Identities=37% Similarity=0.481 Sum_probs=89.9
Q ss_pred EEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc------hhHHhh
Q 045363 305 VKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS------QDYTID 378 (712)
Q Consensus 305 ~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~------~~~~~~ 378 (712)
++++||+++.|++++.... ..+++++..... .......|.+..+...+++||||||+++.+ .. +++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~-----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~-~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS-----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGD-AVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC-----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHH-HHH
Confidence 5789999999999996554 467777633211 223447899888888999999999999775 34 788
Q ss_pred ccCceEEEEEecCCCCc---ccceeeeEEEeChhhHHHHHHHHhcCCCceEE
Q 045363 379 RLQGAGTIVAVDAPTDI---AIATLIAGTFVVPEVGIKIDQYINSTKNPQAV 427 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 427 (712)
..||.|+|++++..... .....+|++.|+.++++.|+.|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999998876542 22467999999999999999999987665543
No 46
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.67 E-value=3.9e-07 Score=81.67 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=61.9
Q ss_pred eeeeecCCCceeEEEEEEEEEcCCCCeeEEEEEeC--------CCC----------c-EEEEeeceEEeecCCcEEEEEE
Q 045363 612 MHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHS--------PKG----------L-SVTVSPRVLTFSRSQQTRSFTV 672 (712)
Q Consensus 612 ~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~v 672 (712)
|+|++.. + ..+++++|+|.|+.+.+|+++... ..| . .+...+..+++ ++|++++|+|
T Consensus 1 i~L~d~~-~--~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG-N--KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE--S--EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC-C--ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 4566663 5 689999999999999999998751 111 1 57778888999 7999999999
Q ss_pred EEEeccc---CCCCeEEEEEEEEc-CC-cEEEeeEE
Q 045363 673 LVKGSMQ---SGASILSALLEWSD-TK-HSVKSPIL 703 (712)
Q Consensus 673 t~~~~~~---~~~~~~~G~i~~~~-~~-~~v~~P~~ 703 (712)
+++.+.. .++.+++|+|.|++ .. ..+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9999552 44889999999997 34 48999996
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.9e-07 Score=98.09 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=100.8
Q ss_pred ccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCC
Q 045363 84 GMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163 (712)
Q Consensus 84 ~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~ 163 (712)
.+.....|..+++|.++.|+|.|+|++..||++... ....+.+++...+.. +..-
T Consensus 19 d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-----------------------~~~~~s~d~~~~~~~--p~~~ 73 (431)
T KOG3525|consen 19 DLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-----------------------YDPLGSYDVNRHDND--PEPR 73 (431)
T ss_pred cceeeeccccCCCCCceEEEEeeccccccCcccccc-----------------------cCcceeEeeecCCCC--cccc
Confidence 344458999999999999999999999999999742 223334444122211 1111
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh-CCCcEEEecc
Q 045363 164 KSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG-DGVDLISISI 242 (712)
Q Consensus 164 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~S~ 242 (712)
.+......|||-||+-.+...++..-. .|+++++++..++++.. ...+...+...... .-+++-+.||
T Consensus 74 ~~~~~~~~~g~~Ca~~~a~~~~~~~C~--------vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw 142 (431)
T KOG3525|consen 74 CDGTNENKHGTRCAGCVAARANNLTCG--------VGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSW 142 (431)
T ss_pred cCCCCccccCCCCCcccccccCCCcCC--------CCcccCccccceeeeee---ecccceecccccCCCCCceeecCcC
Confidence 122235889999999999886443322 79999999999999853 11122222222222 3478999999
Q ss_pred CCCCCC----CccchHHHHHHH-----hhhcCceEEEecCCCCCCC
Q 045363 243 GGPSRS----YFDDSISIGSFH-----AMKKGILTACSAGNDGPYQ 279 (712)
Q Consensus 243 G~~~~~----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~ 279 (712)
|..... ........+... ...+|-+.|+|.||.|...
T Consensus 143 ~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 143 GPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 977321 111122222222 2356889999999988554
No 48
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.39 E-value=5.3e-07 Score=75.84 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHhCCc----cccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeecc
Q 045363 12 AVKEHHSLLTTAIGDE----KLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLH 75 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~----~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~~ 75 (712)
....|.+++.+++.+. .....++++.|+..||||+++++++++++|+++|+|++|+|++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 15 SFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred hHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3667777777665421 245789999999999999999999999999999999999999988764
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.2e-06 Score=96.49 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred eeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCC-cEEEeccCCCC---CCC--ccchHHHHHHHhhhcCceEEEe
Q 045363 198 ARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGV-DLISISIGGPS---RSY--FDDSISIGSFHAMKKGILTACS 271 (712)
Q Consensus 198 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIN~S~G~~~---~~~--~~~~~~~a~~~a~~~Gi~vV~A 271 (712)
..-+||+|+|..+-. ..+ .......|+.+....-+ -++-.||+... ..+ .-+..+.-.+.|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 367899999998866 222 22222233333222111 33335666431 111 3344555566788899999999
Q ss_pred cCCCCCCCCc--------cccCCCceEEEce
Q 045363 272 AGNDGPYQGT--------VENVAPWIMTVAA 294 (712)
Q Consensus 272 AGN~g~~~~~--------~~~~~p~vitVga 294 (712)
+|.+|....+ .++.+|+|++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999866542 4467899999997
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.24 E-value=6.8e-06 Score=74.84 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=65.0
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-----c--c-cceeeeEEEeChhhHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-----I--A-IATLIAGTFVVPEVGIK 413 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-----~--~-~~~~~p~~~i~~~~g~~ 413 (712)
...|.+..+...+++||||||+|+.| .. +++++||.++|++++.... + . ....+|+++|+.++|+.
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~-~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~ 107 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQK-VAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAA 107 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHH
Confidence 36799888888899999999999987 45 8999999999999987632 1 1 34569999999999999
Q ss_pred HHHHHhcCCCceE
Q 045363 414 IDQYINSTKNPQA 426 (712)
Q Consensus 414 l~~~~~~~~~~~~ 426 (712)
|++++.++.+.++
T Consensus 108 l~~~l~~g~~v~~ 120 (122)
T cd04816 108 LRRRLGAGETLEL 120 (122)
T ss_pred HHHHHcCCCEEEE
Confidence 9999987765443
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.09 E-value=3.9e-06 Score=73.53 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-------cccceeeeEEEeChhhHHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-------IAIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~p~~~i~~~~g~~l 414 (712)
...|.+......+++||||||+|+.| .. +++.+||.|+|+++..... ......||+++|+.++|+.|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~-~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVR-NAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHH-HHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHH-HHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 45677788889999999999999988 56 8999999999999922211 24568899999999999999
Q ss_pred HHHH
Q 045363 415 DQYI 418 (712)
Q Consensus 415 ~~~~ 418 (712)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9986
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.09 E-value=4.3e-05 Score=69.58 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecC-CCCc------ccceeeeEEEeChhhHHHHH
Q 045363 348 GACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDA-PTDI------AIATLIAGTFVVPEVGIKID 415 (712)
Q Consensus 348 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~-~~~~------~~~~~~p~~~i~~~~g~~l~ 415 (712)
..|.+..+ +.+++|||||++|+.| .. +++.+||.++|++++. ...+ .+...+|++.|+.++|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~-~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSA-LAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 46876555 3579999999999988 56 8999999999999987 3321 23467999999999999999
Q ss_pred HHHhcCCCceEE
Q 045363 416 QYINSTKNPQAV 427 (712)
Q Consensus 416 ~~~~~~~~~~~~ 427 (712)
..+.++.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999887665543
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.08 E-value=2.1e-05 Score=71.21 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=62.5
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC--c-----ccceeeeEEEeChhhHHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD--I-----AIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~--~-----~~~~~~p~~~i~~~~g~~l 414 (712)
...|.+..+. .+++||||||+|+.| .. +++..||.|+|++++.... . .....+|++.++.++|..|
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~-~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVL-NAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHH-HHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 4679888774 469999999999877 44 7889999999999887642 1 1235799999999999999
Q ss_pred HHHHhcCCCceE
Q 045363 415 DQYINSTKNPQA 426 (712)
Q Consensus 415 ~~~~~~~~~~~~ 426 (712)
+.|++.+.+.+.
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999997665443
No 54
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.00 E-value=2.9e-05 Score=69.62 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-----c
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-----I 395 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-----~ 395 (712)
..+|++.... ...|.+..+...+++|||+|++||.| .. +++.+||.++|++|+.... .
T Consensus 20 ~~~~~~~~~~-----------~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~-~Aq~aGA~aVII~nn~~~~~~~~~~ 87 (120)
T cd02129 20 TLLPLRNLTS-----------SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKAR-LAQSLGAEGLLIVSRERLVPPSGNR 87 (120)
T ss_pred cceeeecCCC-----------cCCCCccccCccccCCeEEEEECCCcCHHHHHH-HHHHCCCCEEEEEECCCCCCCCCCC
Confidence 4567766543 46799988888899999999999998 56 8999999999999987631 1
Q ss_pred --ccceeeeEEEeChhhHHHHHHHHhc
Q 045363 396 --AIATLIAGTFVVPEVGIKIDQYINS 420 (712)
Q Consensus 396 --~~~~~~p~~~i~~~~g~~l~~~~~~ 420 (712)
.....||+++|+.++|+.|.+.+.+
T Consensus 88 ~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 88 SEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 2446789999999999999998864
No 55
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.97 E-value=4.1e-05 Score=70.93 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=65.6
Q ss_pred cCCCCCCCC--CCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC-CC--c----ccceeeeEEEeChhhHH
Q 045363 347 VGACDYGTL--SMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP-TD--I----AIATLIAGTFVVPEVGI 412 (712)
Q Consensus 347 ~~~c~~~~~--~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~-~~--~----~~~~~~p~~~i~~~~g~ 412 (712)
...|.+... +..++.|+|+|++|+.| .. +++.+||.++|++++.. .. + .....+|.++|+..+|+
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~-nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIK-LAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 467988776 56789999999999998 56 89999999999999986 21 1 22357899999999999
Q ss_pred HHHHHHhcCCCceEE
Q 045363 413 KIDQYINSTKNPQAV 427 (712)
Q Consensus 413 ~l~~~~~~~~~~~~~ 427 (712)
.|+.++.++.+.+.+
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887665543
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.95 E-value=5.8e-05 Score=68.00 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC----c-------ccceeeeEEEeChhh
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD----I-------AIATLIAGTFVVPEV 410 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~~p~~~i~~~~ 410 (712)
.+.|.+.. ...+++|||+|++|+.| .. +++++||.++|++++.... + .....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~-~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAI-NAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 35788643 35689999999999998 55 8999999999999976531 1 123579999999999
Q ss_pred HHHHHHHHhcCCCceEEE
Q 045363 411 GIKIDQYINSTKNPQAVI 428 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~ 428 (712)
|+.|+..+..+..+++.|
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999888776654
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.93 E-value=3.9e-05 Score=70.01 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=63.0
Q ss_pred cCCCCCCC--CCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC--c--c-----cceeeeEEEeChhh
Q 045363 347 VGACDYGT--LSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD--I--A-----IATLIAGTFVVPEV 410 (712)
Q Consensus 347 ~~~c~~~~--~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~--~--~-----~~~~~p~~~i~~~~ 410 (712)
...|.++. +...+++||||||+++.| .. +++.+||.|+|++++.... . . ....+|++.|+.++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~-~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVK-NAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHH-HHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45687776 778899999999999877 55 7889999999999987632 1 1 34579999999999
Q ss_pred HHHHHHHHhcCCCce
Q 045363 411 GIKIDQYINSTKNPQ 425 (712)
Q Consensus 411 g~~l~~~~~~~~~~~ 425 (712)
|..|+.|+.+..+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998755433
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.85 E-value=0.00012 Score=68.07 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=60.7
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc-----c----cceeeeEEEeChhhHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI-----A----IATLIAGTFVVPEVGI 412 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~-----~----~~~~~p~~~i~~~~g~ 412 (712)
.+.|.+.. .+++|||+|++|+.| .. +++++||.++|++++..... . ....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~-nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAK-IAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHH-HHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 36788754 479999999999998 56 99999999999998775321 0 1357999999999999
Q ss_pred HHHHHHhcCCCce
Q 045363 413 KIDQYINSTKNPQ 425 (712)
Q Consensus 413 ~l~~~~~~~~~~~ 425 (712)
.|+.++.++...+
T Consensus 124 ~L~~~l~~g~~Vt 136 (139)
T cd02132 124 ALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHcCCcEE
Confidence 9999998776544
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.82 E-value=8.6e-05 Score=67.89 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-------c-----c---cceeeeEEEe
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-------I-----A---IATLIAGTFV 406 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-------~-----~---~~~~~p~~~i 406 (712)
...|.+... +.+++|||+|++|+.| .. +++.+||.++|++++.... + . ....||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~-~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKAR-RVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHH-HHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 357886544 5678999999999998 55 8999999999999876531 1 1 2457999999
Q ss_pred ChhhHHHHHHHHhcCCCce
Q 045363 407 VPEVGIKIDQYINSTKNPQ 425 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~ 425 (712)
+..+|+.|+.++......+
T Consensus 105 ~~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred EHHHHHHHHHHHHhCCceE
Confidence 9999999999998765543
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.76 E-value=0.00025 Score=64.83 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=61.3
Q ss_pred cCCCCCCCCC--CC----cccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc--------------ccceee
Q 045363 347 VGACDYGTLS--MK----KVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI--------------AIATLI 401 (712)
Q Consensus 347 ~~~c~~~~~~--~~----~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~~ 401 (712)
.+.|.+.... +. ...++|+|++|+.| .. +++.+||.++|++++....+ .....|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~-~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW-NAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHH-HHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 3578765542 22 47899999999998 55 89999999999999876431 113369
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceE
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQA 426 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~ 426 (712)
|+++|+.++|+.|+..+.++...+.
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999988766544
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.73 E-value=0.00015 Score=65.25 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=59.3
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC----c-----ccceeeeEEEeChhhH
Q 045363 346 NVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD----I-----AIATLIAGTFVVPEVG 411 (712)
Q Consensus 346 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~----~-----~~~~~~p~~~i~~~~g 411 (712)
..+.|.+. +..+++|||+|++|+.| .. +++.+||.++|++|+.... + .....+|+++++.+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~-nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVM-WAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 34679766 66889999999999998 56 8999999999999877642 1 2345799999999999
Q ss_pred HHHHHHHhcC
Q 045363 412 IKIDQYINST 421 (712)
Q Consensus 412 ~~l~~~~~~~ 421 (712)
+.|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999887653
No 62
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.73 E-value=0.00017 Score=66.10 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=61.4
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----ccceeeeEEEeChhhHHHHHH
Q 045363 346 NVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI----AIATLIAGTFVVPEVGIKIDQ 416 (712)
Q Consensus 346 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 416 (712)
....|.+...+..+++|||+|++|+.| .. +++.+||.++|++++..... .+...+|.+.+ .++|+.|++
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~-nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAA-NAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHH-HHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 446898776666689999999999988 56 89999999999999876432 33344666666 999999999
Q ss_pred HHhcCCCceE
Q 045363 417 YINSTKNPQA 426 (712)
Q Consensus 417 ~~~~~~~~~~ 426 (712)
.+..+...++
T Consensus 118 ~l~~G~~vtv 127 (129)
T cd02124 118 ALAAGSNVTV 127 (129)
T ss_pred HHhcCCeEEE
Confidence 9987655443
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.53 E-value=0.00035 Score=64.55 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCCCCcccceEEEEecCCch----------hHHhhccCceEEEEEecC--CCC----ccc---ceeeeEEEeChhhHHHH
Q 045363 354 TLSMKKVKGKIVYCLGSGSQ----------DYTIDRLQGAGTIVAVDA--PTD----IAI---ATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 354 ~~~~~~~~gkivl~~~~~~~----------~~~~~~~Ga~g~i~~~~~--~~~----~~~---~~~~p~~~i~~~~g~~l 414 (712)
.+.+.+++|||+|++|+.|. + +++++||.++|++|+. .+. +.+ ...||++.++.++|+.|
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~-~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVK-ACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHH-HHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 34456899999999999773 4 8899999999999998 432 121 46899999999999999
Q ss_pred HHHHhcC
Q 045363 415 DQYINST 421 (712)
Q Consensus 415 ~~~~~~~ 421 (712)
+..+...
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9988643
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.48 E-value=0.0011 Score=60.86 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=62.4
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-------hhHHhhccCceEEEEEecCCCCc--
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-------QDYTIDRLQGAGTIVAVDAPTDI-- 395 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-------~~~~~~~~Ga~g~i~~~~~~~~~-- 395 (712)
..+.++++.+. +.+..+...+++|||||++++.+ .. ++...||.|+|++++....+
T Consensus 22 ~~~~~lV~~g~--------------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~-~A~~~GA~avi~~~~~~g~~~~ 86 (127)
T cd04819 22 EAKGEPVDAGY--------------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYA-KAVAAGAAAFVVVNTVPGVLPA 86 (127)
T ss_pred CeeEEEEEeCC--------------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHH-HHHHCCCEEEEEEeCCCCcCcc
Confidence 45677877653 22223445679999999999866 45 88899999999998766532
Q ss_pred --------ccceeeeEEEeChhhHHHHHHHHhcCC
Q 045363 396 --------AIATLIAGTFVVPEVGIKIDQYINSTK 422 (712)
Q Consensus 396 --------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 422 (712)
.....+|++.|+.++++.|...++.+.
T Consensus 87 ~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 87 TGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123569999999999999999998643
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.47 E-value=0.00053 Score=64.87 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=61.9
Q ss_pred cCCCCCCCCCC---CcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----c-----cceeeeEEEeChh
Q 045363 347 VGACDYGTLSM---KKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI----A-----IATLIAGTFVVPE 409 (712)
Q Consensus 347 ~~~c~~~~~~~---~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~ 409 (712)
.+.|.+....+ .++.|||+|++||.| .. +++.+||.++|++++..... . ....||+++|+.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~-nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVR-NAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHH-HHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 35788766543 889999999999998 56 89999999999999875431 1 2458999999999
Q ss_pred hHHHHHHHHhcCCC
Q 045363 410 VGIKIDQYINSTKN 423 (712)
Q Consensus 410 ~g~~l~~~~~~~~~ 423 (712)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999986543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.15 E-value=0.017 Score=53.47 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCcccceEEEEecCCc------------------hhHHhhccCceEEEEEecCCC-------C-c---ccceeeeEEEe
Q 045363 356 SMKKVKGKIVYCLGSGS------------------QDYTIDRLQGAGTIVAVDAPT-------D-I---AIATLIAGTFV 406 (712)
Q Consensus 356 ~~~~~~gkivl~~~~~~------------------~~~~~~~~Ga~g~i~~~~~~~-------~-~---~~~~~~p~~~i 406 (712)
...+++|||||+.++.| .. .+.+.||.++|+++.... . + .....+|++.|
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~-~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAV-EAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHH-HHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 45689999999999888 46 888999999999985421 1 1 22346999999
Q ss_pred ChhhHHHHHHHHhcCCCce
Q 045363 407 VPEVGIKIDQYINSTKNPQ 425 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~ 425 (712)
+.+++..|...+..+....
T Consensus 113 s~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 113 SVEDADMLERLAARGKPIR 131 (134)
T ss_pred chhcHHHHHHHHhCCCCeE
Confidence 9999999999988765443
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.09 E-value=0.12 Score=45.06 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=61.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEcCCcEEEeeE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPI 702 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~ 702 (712)
..+.+++|+|.+.....|++.........++++|..-.+ ++|++.+++|++..... .+.+++.|........+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--CceEEEEEEEEECCeEEEEEE
Confidence 667788999999999999997754334557777776666 78999999999995432 456789988876666788887
Q ss_pred EEE
Q 045363 703 LVY 705 (712)
Q Consensus 703 ~~~ 705 (712)
-..
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.17 E-value=0.11 Score=42.92 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.7
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEeccc
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+.+++.+|+|.|... ...++++..|+|-++...|..+.--++|++++++++|+....
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 789999999999765 568888888999998888887764489999999999998764
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.93 E-value=0.72 Score=41.47 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=42.8
Q ss_pred CceeEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccC
Q 045363 620 SSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQS 680 (712)
Q Consensus 620 ~~~~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 680 (712)
+...-..+..|+|....+.+|++++..++|+++......+.+ ++|++.++.|.|..+...
T Consensus 29 g~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 29 GSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred CeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 445778889999999999999999999889999665578888 789999999999988744
No 70
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.76 E-value=1.1 Score=40.58 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=58.2
Q ss_pred CCceeeeecCCCceeEEEEEEEEEcCCCCeeEEEEEeC----CCCc--------------------EEEEeeceEEeecC
Q 045363 609 YPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHS----PKGL--------------------SVTVSPRVLTFSRS 664 (712)
Q Consensus 609 ~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~ 664 (712)
...|-+....+. +.+++++|+|.++.+.+|.+.+.. ..|+ -+++ |..+++ ++
T Consensus 16 ~~YFdL~~~P~q--~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~ 91 (121)
T PF06030_consen 16 VSYFDLKVKPGQ--KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PP 91 (121)
T ss_pred CCeEEEEeCCCC--EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CC
Confidence 345555555534 899999999999999999987631 1110 0222 344777 79
Q ss_pred CcEEEEEEEEEecccCCCCeEEEEEEEEc
Q 045363 665 QQTRSFTVLVKGSMQSGASILSALLEWSD 693 (712)
Q Consensus 665 ~~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 693 (712)
+++++++++++.+...-.+.+-|.|.++.
T Consensus 92 ~~sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 92 NESKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred CCEEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 99999999999988666777888888763
No 71
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.02 E-value=0.15 Score=49.40 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCC-------------------C-----c---c--------
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPT-------------------D-----I---A-------- 396 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~-------------------~-----~---~-------- 396 (712)
..+++|||||++++.+ .. +++..||+|+|++++... + . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~-~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVA-NAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHH-HHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 4689999999999877 56 899999999999987310 0 0 0
Q ss_pred --cceeeeEEEeChhhHHHHHHHHhc
Q 045363 397 --IATLIAGTFVVPEVGIKIDQYINS 420 (712)
Q Consensus 397 --~~~~~p~~~i~~~~g~~l~~~~~~ 420 (712)
.--.||++-|+..++..|+..+.-
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998853
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.49 E-value=0.88 Score=42.78 Aligned_cols=83 Identities=18% Similarity=0.072 Sum_probs=54.7
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCC------------------c-----hhHHhhccCc
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSG------------------S-----QDYTIDRLQG 382 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-----~~~~~~~~Ga 382 (712)
.+-+++|.+.. .....|....+...+++|||||+.++. + .. ++...||
T Consensus 20 vtg~lVfvGyG--------i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~-~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYG--------ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKAT-NARRHGA 90 (151)
T ss_pred ceEeEEEecCC--------cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHH-HHHHCCC
Confidence 35677776532 123456666677889999999997763 1 44 7789999
Q ss_pred eEEEEEecCCCCcccceeee------EEEeChhhHHHHHHH
Q 045363 383 AGTIVAVDAPTDIAIATLIA------GTFVVPEVGIKIDQY 417 (712)
Q Consensus 383 ~g~i~~~~~~~~~~~~~~~p------~~~i~~~~g~~l~~~ 417 (712)
.|+|++++.....+....+| .+.++....+.+...
T Consensus 91 ~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 91 AAVIVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred eEEEEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 99999998765432222222 556666666666654
No 73
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.83 E-value=0.6 Score=43.11 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=43.2
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----------------hhHHhhccCceEEEEE
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----------------QDYTIDRLQGAGTIVA 388 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------~~~~~~~~Ga~g~i~~ 388 (712)
.+-+++|.+.. .....|....+...+++|||||+.++.+ .+ .+...||.|+|++
T Consensus 22 v~gelVfvGyG--------~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~-~A~~~GA~aVIi~ 92 (137)
T cd04820 22 VEAPLVFVGYG--------LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKAR-YAAKAGAIGMITL 92 (137)
T ss_pred ceEeEEEecCC--------cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHH-HHHHCCCeEEEEE
Confidence 45677776532 1234577777778899999999998763 44 7889999999999
Q ss_pred ecCC
Q 045363 389 VDAP 392 (712)
Q Consensus 389 ~~~~ 392 (712)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9853
No 74
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=91.29 E-value=0.53 Score=43.77 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=43.8
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----------------------hhHHhhccC
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----------------------QDYTIDRLQ 381 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------------~~~~~~~~G 381 (712)
....++++.+.. .....|....+...+++|||||+.++.| .. .+...|
T Consensus 19 ~~~aelVfvGyG--------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~-~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYG--------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYE-EAARHG 89 (142)
T ss_pred ccceeeEEecCC--------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHH-HHHHCC
Confidence 346778876532 1234577778888899999999987643 33 778899
Q ss_pred ceEEEEEecCC
Q 045363 382 GAGTIVAVDAP 392 (712)
Q Consensus 382 a~g~i~~~~~~ 392 (712)
|.|+|++++..
T Consensus 90 A~gvIii~~~~ 100 (142)
T cd04814 90 AAGVLIVHELA 100 (142)
T ss_pred CcEEEEEeCCC
Confidence 99999999865
No 75
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.95 E-value=3.3 Score=45.32 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=62.3
Q ss_pred eeeeecCCCceeEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEE
Q 045363 612 MHFHFTNESSISAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLE 690 (712)
Q Consensus 612 ~~~~~~~~~~~~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~ 690 (712)
..+....+. ..++...++|.|+.+ ..-++++..|.|-++.|+|.++---++|++.++.+|++.+.....+-++=+|+
T Consensus 389 ~~lt~taGe--e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~ 466 (513)
T COG1470 389 YRLTITAGE--EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT 466 (513)
T ss_pred EEEEecCCc--cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence 444444433 778889999999876 55688999999999999999776668999999999999988665555666666
Q ss_pred EEc
Q 045363 691 WSD 693 (712)
Q Consensus 691 ~~~ 693 (712)
-+.
T Consensus 467 ~ks 469 (513)
T COG1470 467 AKS 469 (513)
T ss_pred Eee
Confidence 554
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.86 E-value=9.4 Score=41.95 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=45.7
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEe-CCCCcEEEEeec-----eEEeecCCcEEEEEEEEEeccc
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVH-SPKGLSVTVSPR-----VLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+..|++++.|.|..+.+|.+++. .|+|-...+.-. ++.+ .+||+++|+|.|.....
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 77899999999999999999998 688766555433 4555 68999999999998764
No 77
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=85.66 E-value=6.1 Score=35.54 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=47.6
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeC---CCC----cEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHS---PKG----LSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWS 692 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 692 (712)
..+.+++|+|.++.+..+.+.+.. .+. -.+-++|..+.+ ++|+++.|.| +.......+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 446688999999988888877764 111 257799999999 7999999999 7754433344444456664
No 78
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=85.26 E-value=1.3 Score=44.51 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~ 392 (712)
..+++|||||++++.+ .. +++..||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~-~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVK-NAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHH-HHHHcCCEEEEEEeCch
Confidence 5789999999998866 56 88999999999999853
No 79
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=85.14 E-value=3.3 Score=45.41 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC---------cccceeeeEEEeChhhHHHHHHHHhcCC
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD---------IAIATLIAGTFVVPEVGIKIDQYINSTK 422 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 422 (712)
...+++|+++..||.| .. .++++||.++++.|+.... ...+..||++++.+++++.+.....++.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~-~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAK-LAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhh-hhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 4678999999999998 66 8899999999999985422 1345779999999999999998666665
Q ss_pred CceEEE
Q 045363 423 NPQAVI 428 (712)
Q Consensus 423 ~~~~~~ 428 (712)
+.++.+
T Consensus 170 ~V~~~l 175 (541)
T KOG2442|consen 170 NVELAL 175 (541)
T ss_pred eEEEEE
Confidence 554443
No 80
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=84.88 E-value=1.1 Score=41.90 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.8
Q ss_pred CcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC
Q 045363 358 KKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 358 ~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~ 392 (712)
.+++|||+|++.|.. .+ +++..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~-~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLS-LLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHH-HHHHCCCeEEEEecChh
Confidence 679999999998765 67 99999999999999853
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=80.77 E-value=1.1 Score=52.56 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred eceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEc-----CCcEEEeeEEEEec
Q 045363 656 PRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSD-----TKHSVKSPILVYKQ 707 (712)
Q Consensus 656 p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~ 707 (712)
|+.|-+ .++.+.+.|+|+++... .+..++.|.=-| ..+.+|||+-|-..
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTGLA-PGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhhee--ccCCceeEEEECCcCCC-CCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 455555 56789999999998755 556666665433 46889999987543
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=79.70 E-value=9.2 Score=42.58 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=49.5
Q ss_pred CceeEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecc
Q 045363 620 SSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM 678 (712)
Q Consensus 620 ~~~~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 678 (712)
+......+..+.|.+..+.+|+++++..++.++...+..+++ ++|++.++.|+|..+.
T Consensus 344 g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 344 GVVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred CcEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 445678889999999999999999999999988876457888 7899999999998875
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=75.48 E-value=28 Score=32.19 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=52.3
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEE
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWS 692 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 692 (712)
...+.+.+-|..+.. ...++......++++--.|+.+++ .+++.++++.+++..... .+++||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEe
Confidence 455566677776532 444566666788998888999998 688999999999988754 88999999985
No 84
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=72.59 E-value=5.4 Score=37.04 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC---------c----ccceeeeEEEeCh
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD---------I----AIATLIAGTFVVP 408 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~---------~----~~~~~~p~~~i~~ 408 (712)
...|.... +...+.+.++|++||+| .. +++.+||..+|+.++.... + .+...+|++++..
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl-~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGECSFLVKTL-NGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCCceeeehhh-hhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 45676432 34567789999999999 34 8899999999998876533 1 2457899999999
Q ss_pred hhHHHHHHHHhcCCCceEEEEE
Q 045363 409 EVGIKIDQYINSTKNPQAVIYK 430 (712)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~ 430 (712)
.+|..++.-+..-...-+.|..
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred cceEEEehhHHHhCCccEEEec
Confidence 9988777776655444444443
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.05 E-value=36 Score=29.52 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecc
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM 678 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 678 (712)
.....++|+|.++...-|++....+... .|.|..-.+ .++++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 5677789999999999999998877755 467887677 7899999999999854
No 86
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=60.07 E-value=33 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=25.9
Q ss_pred EEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEE
Q 045363 628 RTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLV 674 (712)
Q Consensus 628 rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~ 674 (712)
.+++|.|+.+...+-....=.-..+.... -.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~--~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSK--KPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCc--ceE-CCCCEEEEEEEC
Confidence 57889998765543222222334444433 234 789999988874
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=27 Score=37.37 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCCCCCC---CCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-------cccceeeeEEEeChhhHH
Q 045363 348 GACDYGTL---SMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-------IAIATLIAGTFVVPEVGI 412 (712)
Q Consensus 348 ~~c~~~~~---~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~p~~~i~~~~g~ 412 (712)
++|.+... ........++|+.|++| .. +++.+|..++|++|+.... ......++.+.++...|+
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~-~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVL-NAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHh-hcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 45654332 23556778999999998 55 8999999999999976654 246678999999999999
Q ss_pred HHHHHHhcC
Q 045363 413 KIDQYINST 421 (712)
Q Consensus 413 ~l~~~~~~~ 421 (712)
.|..|....
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 999986543
No 88
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=52.78 E-value=34 Score=41.29 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCCCceeeeecCCC------ceeEEEEEEEEEcCCCCeeEEEEE--eCCCCcEEEEee-------ceEEeecCCcEEEEE
Q 045363 607 LNYPSMHFHFTNES------SISAIFRRTVTNVGFAKSLYKATV--HSPKGLSVTVSP-------RVLTFSRSQQTRSFT 671 (712)
Q Consensus 607 ln~ps~~~~~~~~~------~~~~~~~rtv~n~~~~~~ty~~~~--~~~~g~~v~v~p-------~~~~~~~~~~~~~~~ 671 (712)
|.|-.|...+..-. ..+.+++++|||+|+.+..-.+.+ ..|.+- +. .| ..+.+ ++||+++++
T Consensus 646 LSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~ 722 (765)
T PRK15098 646 LSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVS 722 (765)
T ss_pred CCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEE
Confidence 66776665444210 126889999999998765444443 333221 11 12 13344 799999999
Q ss_pred EEEEecc
Q 045363 672 VLVKGSM 678 (712)
Q Consensus 672 vt~~~~~ 678 (712)
++++...
T Consensus 723 ~~l~~~~ 729 (765)
T PRK15098 723 FPIDIEA 729 (765)
T ss_pred EeecHHH
Confidence 9999765
No 89
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=51.64 E-value=22 Score=33.76 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCCCCcccceEEEEecCCc------------------------hhHHhhccCceEEEEEecC
Q 045363 354 TLSMKKVKGKIVYCLGSGS------------------------QDYTIDRLQGAGTIVAVDA 391 (712)
Q Consensus 354 ~~~~~~~~gkivl~~~~~~------------------------~~~~~~~~Ga~g~i~~~~~ 391 (712)
.+...|++||||++..+.. .+ .+...||.|+|+.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~-~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYE-EAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHH-HHHHCCCeEEEEEeCC
Confidence 4567899999999986432 34 7788999999999764
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.30 E-value=1.5e+02 Score=24.88 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=32.1
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceE-EeecCCcEEEEEEEEEec
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVL-TFSRSQQTRSFTVLVKGS 677 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 677 (712)
..+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 889999999999864 5666666433 2222 12222 44 688999988888887
No 91
>PLN03080 Probable beta-xylosidase; Provisional
Probab=50.64 E-value=44 Score=40.39 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=33.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEE--eCCCC-cEE----EEeeceEEeecCCcEEEEEEEEEe
Q 045363 623 SAIFRRTVTNVGFAKSLYKATV--HSPKG-LSV----TVSPRVLTFSRSQQTRSFTVLVKG 676 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~--~~~~g-~~v----~v~p~~~~~~~~~~~~~~~vt~~~ 676 (712)
..+++++|||+|+....-.+.+ ..|.. +.. -+-=..+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999998776655553 22321 110 000123344 78999999999986
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.35 E-value=62 Score=26.98 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=25.9
Q ss_pred EEEEEEEEEcCCCCee--------EEEEEeCCCCcE---------EEEeeceEEeecCCcEEEEEEEEEeccc
Q 045363 624 AIFRRTVTNVGFAKSL--------YKATVHSPKGLS---------VTVSPRVLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 624 ~~~~rtv~n~~~~~~t--------y~~~~~~~~g~~---------v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+.++.+|+|.++.+.+ |.+.+...+|-. ++---...++ ++||+++|+.+++....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS---
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCCC
Confidence 4566778887765433 344444333322 2222234455 78999999999887654
No 93
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=43.54 E-value=2.2e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=35.8
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEe----CCCCcE---EEEeeceEEeecCCcEEEEEEEEEecc
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVH----SPKGLS---VTVSPRVLTFSRSQQTRSFTVLVKGSM 678 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~----~~~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 678 (712)
..++.++++|..+.. .+-++... .-.|+. .......+.+ +++++.++++++....
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 788999999999876 55333321 134653 4556666777 7899999999998765
No 94
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=42.88 E-value=68 Score=26.41 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=29.1
Q ss_pred EEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEcCC
Q 045363 651 SVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTK 695 (712)
Q Consensus 651 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~ 695 (712)
.+++.|..+++ ..|+++.|++++..... .- ...+.|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEECC
Confidence 57788988888 58899999999765432 12 6778887644
No 95
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=38.04 E-value=2.9e+02 Score=29.85 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=34.9
Q ss_pred eEEEEEEEEEcCCCCeeE---E---EEEeC----------------CCCcEEEEeeceEEeecCCcEEEEEEEEEecc--
Q 045363 623 SAIFRRTVTNVGFAKSLY---K---ATVHS----------------PKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM-- 678 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty---~---~~~~~----------------~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-- 678 (712)
+.+++.+|||.|+++... + +.... ..| ++|+|+. -+ .+||+++++|+++...
T Consensus 264 ~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~dA~We 339 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQDAAWE 339 (381)
T ss_dssp EEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-HHHH
T ss_pred EEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeehhHHH
Confidence 889999999999876332 1 11111 123 3445543 12 5899999999886432
Q ss_pred --------cCCCCeEEEEEEEEc
Q 045363 679 --------QSGASILSALLEWSD 693 (712)
Q Consensus 679 --------~~~~~~~~G~i~~~~ 693 (712)
...+...-|-|.|.|
T Consensus 340 veRL~~l~~D~dsrfgGLLff~d 362 (381)
T PF04744_consen 340 VERLSDLIYDPDSRFGGLLFFFD 362 (381)
T ss_dssp HTTGGGGGGSSS-EEEEEEEEEE
T ss_pred HhhhhhhhcCcccceeEEEEEEc
Confidence 122455556566665
No 96
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=32.47 E-value=43 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHcc
Q 045363 508 AAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 508 aALl~~~~P~lsp~~ik~~L~~T 530 (712)
+--|++.+|+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34578899999999999999654
No 97
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=31.97 E-value=3.6e+02 Score=24.84 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEEEEEEEcCCCCeeE---EEEEeCCCC---cEEEEee------c---eEEeecCCcEEEEEEEEEecccC
Q 045363 623 SAIFRRTVTNVGFAKSLY---KATVHSPKG---LSVTVSP------R---VLTFSRSQQTRSFTVLVKGSMQS 680 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty---~~~~~~~~g---~~v~v~p------~---~~~~~~~~~~~~~~vt~~~~~~~ 680 (712)
...++-+++|.++....| +++.....| .+..+.| . .-.+ ++|++..|.+++......
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l-~pg~~~~~~~~~~~p~~~ 140 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGL-PPGESVPFRLRLEDPPPR 140 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhccccccccccc-CCCCeEEEEEEeeCCCCc
Confidence 677888999999887766 444444444 2233444 1 2234 789999999999876543
No 98
>PRK15019 CsdA-binding activator; Provisional
Probab=30.22 E-value=50 Score=30.95 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=28.0
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKS 525 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~ 525 (712)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445665 68999999999999999999999976
No 99
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.19 E-value=45 Score=22.55 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 045363 499 MACPHAAAAAAYV 511 (712)
Q Consensus 499 mAaP~VAG~aALl 511 (712)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 100
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=29.90 E-value=3.6e+02 Score=23.17 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=22.5
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEE
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVHSPKGLSVT 653 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~ 653 (712)
-..-.++|+|.++.. ..|++++.-+.+.+++
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 455578899988876 4688888877665543
No 101
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.90 E-value=55 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=28.6
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSA 526 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~ 526 (712)
..+.|.| =|+.|-|++|||.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 589999999999999999999998743
No 102
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.54 E-value=5.2e+02 Score=25.11 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=39.6
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeC----CCCcEEEEeec--eEEeecCCcEEEEEEEEEecccCCCCeEEEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHS----PKGLSVTVSPR--VLTFSRSQQTRSFTVLVKGSMQSGASILSAL 688 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~----~~g~~v~v~p~--~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~ 688 (712)
..+++.+|.|+|+. .-|.|++.. ++++++.--.. ++.--++|+..+..+++++... +.+.++.
T Consensus 39 ~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~--G~f~~~~ 107 (181)
T PF05753_consen 39 DVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKS--GYFNFTP 107 (181)
T ss_pred EEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeee--EEEEccC
Confidence 88999999999975 667887754 23333311001 1111178999999999988652 4454444
No 103
>PRK13203 ureB urease subunit beta; Reviewed
Probab=26.17 E-value=2.1e+02 Score=24.87 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.3
Q ss_pred eEEEEEEEEEcCCCC
Q 045363 623 SAIFRRTVTNVGFAK 637 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~ 637 (712)
..+++++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRP 33 (102)
T PRK13203 19 RETVTLTVANTGDRP 33 (102)
T ss_pred CCEEEEEEEeCCCCc
Confidence 566788999999875
No 104
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.11 E-value=2.1e+02 Score=24.91 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.3
Q ss_pred eEEEEEEEEEcCCCC
Q 045363 623 SAIFRRTVTNVGFAK 637 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~ 637 (712)
..+++++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRp 33 (101)
T cd00407 19 REAVTLKVKNTGDRP 33 (101)
T ss_pred CCEEEEEEEeCCCcc
Confidence 567788999999875
No 105
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.83 E-value=67 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=28.1
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKS 525 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~ 525 (712)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4455666 68999999999999999999999875
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=25.39 E-value=2e+02 Score=25.07 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=11.7
Q ss_pred EEEEEEEEEcCCCC
Q 045363 624 AIFRRTVTNVGFAK 637 (712)
Q Consensus 624 ~~~~rtv~n~~~~~ 637 (712)
.+++++|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 57788999999875
No 107
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=24.77 E-value=61 Score=24.79 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=22.0
Q ss_pred EeeecccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 045363 492 NILSGTSMACPHAAAAAA------YVKSFHPDWSPAAIKSALM 528 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aA------Ll~~~~P~lsp~~ik~~L~ 528 (712)
-.+.||=+..=.|....+ -+.+.||.|++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455666666555554432 3455699999999999984
No 108
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.66 E-value=2.4e+02 Score=24.48 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.2
Q ss_pred eEEEEEEEEEcCCCC
Q 045363 623 SAIFRRTVTNVGFAK 637 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~ 637 (712)
..+.+++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRP 33 (101)
T TIGR00192 19 RKTVSVKVKNTGDRP 33 (101)
T ss_pred CcEEEEEEEeCCCcc
Confidence 566788999999875
No 109
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.00 E-value=79 Score=28.71 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=26.6
Q ss_pred eeecccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 045363 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSA 526 (712)
Q Consensus 493 ~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~ 526 (712)
.+.|.|= |+.|-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 5556665 67999999999999999999998653
No 110
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.42 E-value=37 Score=15.35 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=3.8
Q ss_pred cccCCC
Q 045363 444 SFSSRG 449 (712)
Q Consensus 444 ~fSs~G 449 (712)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467776
No 111
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.96 E-value=2.5e+02 Score=28.55 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEEEEEEEcCCCCeeEEEEEeC---C---C----------CcEEEEeeceEEeecCCcEEEEEEEEEec
Q 045363 624 AIFRRTVTNVGFAKSLYKATVHS---P---K----------GLSVTVSPRVLTFSRSQQTRSFTVLVKGS 677 (712)
Q Consensus 624 ~~~~rtv~n~~~~~~ty~~~~~~---~---~----------g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 677 (712)
....++|.|.|+.+..+++++.. | . --.+-++|..+.+ ++|+++.|.|.-...
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 34467889999888777776531 1 1 1257788999999 788888888776654
No 112
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.32 E-value=81 Score=29.34 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=26.4
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKS 525 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~ 525 (712)
..+.|=|= |++|.|.+|++.+.+-..+|++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 34445553 6899999999999999999999853
No 113
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=22.11 E-value=4.8e+02 Score=21.96 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCCCceeeeecCCCceeEEEEEEEEEcCC--CCeeEEEEE---eCCCCcEEEEeeceEEeecCCcEEEEEEEEEecc
Q 045363 607 LNYPSMHFHFTNESSISAIFRRTVTNVGF--AKSLYKATV---HSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM 678 (712)
Q Consensus 607 ln~ps~~~~~~~~~~~~~~~~rtv~n~~~--~~~ty~~~~---~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 678 (712)
+.-+++++.+.. + ...+.+++++ +. ...+..+.. .+..|......+.+++|.+...++++.|++-...
T Consensus 15 f~~~~~~v~E~~-~--~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD~ 87 (100)
T PF03160_consen 15 FSSPSYTVSEGD-G--TVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDDD 87 (100)
T ss_dssp ESSSEEEEETTS-S--EEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---S
T ss_pred EeCCEEEEEeCC-C--EEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCCC
Confidence 334455555543 3 3444444443 32 223333322 2234666677788899954445577777765544
No 114
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.90 E-value=4.3e+02 Score=23.25 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045363 203 PSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGP 245 (712)
Q Consensus 203 P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~ 245 (712)
++++|+.+ +..+||....++.-++++.+.|+++|-+|-...
T Consensus 36 ~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 46777765 445678888999999999999999999986543
No 115
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.41 E-value=3.1e+02 Score=20.60 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=23.8
Q ss_pred eEEEEEEEEEcCCCCee-EEEEEeCCCCcEEEEeeceEEe
Q 045363 623 SAIFRRTVTNVGFAKSL-YKATVHSPKGLSVTVSPRVLTF 661 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~ 661 (712)
..+++++++|.|....+ ..++-.-|+|+.. .|.++++
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 88999999999986544 2333334667654 3455544
No 116
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=21.16 E-value=8.5e+02 Score=30.04 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCCeeEEEEEe-----CCCCcEEEEeeceEEeecCCcE-EEEEEEEEecc
Q 045363 635 FAKSLYKATVH-----SPKGLSVTVSPRVLTFSRSQQT-RSFTVLVKGSM 678 (712)
Q Consensus 635 ~~~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~~-~~~~vt~~~~~ 678 (712)
+...+.+|.+. +..|........+|+| ++||+ ++++|++..+.
T Consensus 428 dl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 428 DLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDDD 476 (928)
T ss_pred CCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccCC
Confidence 33444555443 3456677677789999 46655 66666665544
No 117
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=21.01 E-value=4.9e+02 Score=21.66 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=35.0
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILS 686 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~ 686 (712)
.-.+.++++|.|....++++.-..-. .-.|.++++ ++|+++++.+.+.. .++|+.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~~----s~gwYD 73 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLAA----SGGWYD 73 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeecC----CCCcEE
Confidence 44788999999988888877652111 012455566 67888887776622 256665
No 118
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.71 E-value=1.3e+02 Score=21.31 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHccc
Q 045363 507 AAAYVKSFHPDWSPAAIKSALMTTA 531 (712)
Q Consensus 507 ~aALl~~~~P~lsp~~ik~~L~~TA 531 (712)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 119
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.65 E-value=7.7e+02 Score=25.24 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=37.4
Q ss_pred eEEEEEEEEEcCCCCeeEEEEE--eCCC---CcEEEEeeceEEeecCCcEEEEEEEEEecccC
Q 045363 623 SAIFRRTVTNVGFAKSLYKATV--HSPK---GLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQS 680 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~--~~~~---g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 680 (712)
....+++|+|.++. .|-+.. ...+ ..-+.|+|+.+.+ .+++.++++|.......+
T Consensus 55 ~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRL-ep~~~~~lRIi~~~~~LP 114 (246)
T PRK15233 55 APSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKV-ESNARTRLKVIPTSNLFN 114 (246)
T ss_pred CcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEE-CCCCceEEEEEECCCCCC
Confidence 56677888997644 465543 2221 2347889999999 688999999887754433
No 120
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.46 E-value=2.5e+02 Score=22.50 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEEEEEEEcCCCCee-EEEEEeCCCCcEE
Q 045363 623 SAIFRRTVTNVGFAKSL-YKATVHSPKGLSV 652 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~t-y~~~~~~~~g~~v 652 (712)
..+++++|+|.|+.... ..+.-.-|+|+++
T Consensus 42 ~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred EEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 78999999999986532 3333333666654
No 121
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.39 E-value=4.6e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=-0.047 Sum_probs=11.6
Q ss_pred eEEEEEEEEEcCCCCeeEEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKA 642 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~ 642 (712)
...++.||+|..+.+.+-.+
T Consensus 243 ~~~~~itv~N~~~~~v~v~v 262 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTV 262 (317)
T ss_pred EEEEEEEEECCCCCCEEEEE
Confidence 45566677777655544433
Done!