BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045364
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK
LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS

High Scoring Gene Products

Symbol, full name Information P value
EMB1687
AT1G04635
protein from Arabidopsis thaliana 1.0e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045364
        (97 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956160 - symbol:EMB1687 "AT1G04635" species...   329  1.0e-29   1
POMBASE|SPCC830.09c - symbol:SPCC830.09c "RNase P and RNa...   100  1.9e-05   1
ASPGD|ASPL0000046823 - symbol:AN2437 species:162425 "Emer...    72  0.00050   2


>TAIR|locus:504956160 [details] [associations]
            symbol:EMB1687 "AT1G04635" species:3702 "Arabidopsis
            thaliana" [GO:0004526 "ribonuclease P activity" evidence=ISS]
            [GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008033 "tRNA processing"
            evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005773 "vacuole" evidence=IDA]
            InterPro:IPR002759 Pfam:PF01900 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005773 GO:GO:0005730 GO:GO:0008033
            EMBL:AC002376 PIR:B86179 GO:GO:0004526 EMBL:BT015147 EMBL:BT015896
            IPI:IPI00529334 RefSeq:NP_683274.1 UniGene:At.49851
            ProteinModelPortal:Q6AWV1 SMR:Q6AWV1 DNASU:839460
            EnsemblPlants:AT1G04635.1 GeneID:839460 KEGG:ath:AT1G04635
            TAIR:At1g04635 eggNOG:COG1369 HOGENOM:HOG000006304
            InParanoid:Q6AWV1 KO:K03537 OMA:ITKLCII PhylomeDB:Q6AWV1
            Genevestigator:Q6AWV1 Uniprot:Q6AWV1
        Length = 151

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 64/98 (65%), Positives = 82/98 (83%)

Query:     1 MIVEVFLDPNKELPMDD-PIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPIT 59
             M++EVFLDP+K+L  +  PIILTQFN  KAI+D+ILVNF ECGL SSL SFQVKYVNPIT
Sbjct:     9 MLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPIT 68

Query:    60 KLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
             KLCI+++S ++ ++VW  IT+V+SIGNC V+ N LD+S
Sbjct:    69 KLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106


>POMBASE|SPCC830.09c [details] [associations]
            symbol:SPCC830.09c "RNase P and RNase MRP subunit
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000172
            "ribonuclease MRP complex" evidence=ISO] [GO:0005655 "nucleolar
            ribonuclease P complex" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] [GO:0006364 "rRNA processing"
            evidence=ISO] [GO:0008033 "tRNA processing" evidence=ISO]
            [GO:0000171 "ribonuclease MRP activity" evidence=ISO] [GO:0004526
            "ribonuclease P activity" evidence=ISO] InterPro:IPR002759
            Pfam:PF01900 PomBase:SPCC830.09c GO:GO:0005783 EMBL:CU329672
            GO:GO:0008033 GO:GO:0006364 GO:GO:0005655 GO:GO:0000172
            GO:GO:0004526 eggNOG:COG1369 KO:K03537 OMA:ITKLCII PIR:T41635
            RefSeq:NP_588479.1 ProteinModelPortal:Q9UU90 STRING:Q9UU90
            EnsemblFungi:SPCC830.09c.1 GeneID:2538895 KEGG:spo:SPCC830.09c
            HOGENOM:HOG000216538 OrthoDB:EOG4M9522 NextBio:20800074
            Uniprot:Q9UU90
        Length = 139

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query:    13 LPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQ 72
             +P D  I  +  +  K IR  +  NF + G+     S  VKY +P T   I++ S + F+
Sbjct:    27 IPSDSSITTSSLS--KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFR 84

Query:    73 KVWSTITMVRSIGNCLVLFNALDLS 97
               W+ + ++R +    V+   + +S
Sbjct:    85 LAWAALVLIRELYGKPVIIRVVRVS 109


>ASPGD|ASPL0000046823 [details] [associations]
            symbol:AN2437 species:162425 "Emericella nidulans"
            [GO:0034965 "intronic box C/D snoRNA processing" evidence=IEA]
            [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] [GO:0000172 "ribonuclease MRP complex"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA]
            [GO:0000171 "ribonuclease MRP activity" evidence=IEA] [GO:0004526
            "ribonuclease P activity" evidence=IEA] InterPro:IPR002759
            Pfam:PF01900 EMBL:BN001307 GO:GO:0008033 GO:GO:0004540
            EMBL:AACD01000040 eggNOG:COG1369 KO:K03537 HOGENOM:HOG000216538
            OrthoDB:EOG4M9522 OMA:YFSNKTS RefSeq:XP_660041.1
            ProteinModelPortal:Q5BAJ3 EnsemblFungi:CADANIAT00009149
            GeneID:2874665 KEGG:ani:AN2437.2 Uniprot:Q5BAJ3
        Length = 214

 Score = 72 (30.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query:    28 KAIRDNILVNFSECGLAS----SLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRS 83
             K +RD +   F + G+            VKY++P T   II+     ++ VW+ +T +  
Sbjct:    56 KMVRDEVAKMFGDWGIGRLGGVGAGGVSVKYLSPATSTAIIRCPRASYRLVWTALTYISH 115

Query:    84 I 84
             +
Sbjct:   116 V 116

 Score = 35 (17.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query:     1 MIVEV-FLDPNKELPMDDPIILTQFNELKAIR 31
             ++VE+ + DP+   P+     L  + +   +R
Sbjct:     9 LLVEILYPDPSSSPPLSSATSLKNYGQRSQLR 40


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        97   0.00091  102 3  11 22  0.45    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.01u 0.18s 11.19t   Elapsed:  00:00:00
  Total cpu time:  11.01u 0.18s 11.19t   Elapsed:  00:00:00
  Start:  Sat May 11 14:45:46 2013   End:  Sat May 11 14:45:46 2013

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