BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045364
         (97 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KNY|A Chain A, Kanamycin Nucleotidyltransferase
 pdb|1KNY|B Chain B, Kanamycin Nucleotidyltransferase
          Length = 253

 Score = 28.5 bits (62), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 15 MDDPIILTQFNELK---AIRDNILVNFSE----CGLASSLRSFQVKYVNPITKLCIIKTS 67
          M+ PII+T+   +K    I++ IL  + +     G+  SL        + I  +C++ T 
Sbjct: 1  MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60

Query: 68 MKDFQKVWST 77
            +F   W+T
Sbjct: 61 EAEFSHEWTT 70


>pdb|1KAN|A Chain A, Molecular Structure Of Kanamycin Nucleotidyltransferase
          Determined To 3.0-Angstroms Resolution
 pdb|1KAN|B Chain B, Molecular Structure Of Kanamycin Nucleotidyltransferase
          Determined To 3.0-Angstroms Resolution
          Length = 253

 Score = 28.5 bits (62), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 15 MDDPIILTQFNELK---AIRDNILVNFSE----CGLASSLRSFQVKYVNPITKLCIIKTS 67
          M+ PII+T+   +K    I++ IL  + +     G+  SL        + I  +C++ T 
Sbjct: 1  MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60

Query: 68 MKDFQKVWST 77
            +F   W+T
Sbjct: 61 EAEFSHEWTT 70


>pdb|2RA1|A Chain A, Crystal Structure Of The N-Terminal Part Of The Bacterial
           S-Layer Protein Sbsc
          Length = 412

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 12  ELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCII 64
           +LP D  + LT++  +K    N++ +  E    SS +  Q K++N   K  +I
Sbjct: 339 KLPEDSAVDLTKYVTVKDAAGNVIKSGFELEFTSSEKLTQGKFINTTGKKSVI 391


>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
          Length = 343

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 2   IVEVFLDPNKELPMDDPIIL---------------TQFNELKAIRDNI-LVNFSECGLAS 45
           ++EV  +  K  P + PI +                    +  I+D + L++ S  GL +
Sbjct: 196 LIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLN 255

Query: 46  S----LRSFQVKYVNPITKLCIIKTS 67
                   +QVKY   I K C IKTS
Sbjct: 256 VDINLYPGYQVKYAETIKKRCNIKTS 281


>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
          Length = 337

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 2   IVEVFLDPNKELPMDDPIIL---------------TQFNELKAIRDNI-LVNFSECGLAS 45
           ++EV  +  K  P + PI +                    +  I+D + L++ S  GL +
Sbjct: 196 LIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLN 255

Query: 46  S----LRSFQVKYVNPITKLCIIKTS 67
                   +QVKY   I K C IKTS
Sbjct: 256 VDINLYPGYQVKYAETIKKRCNIKTS 281


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,548,388
Number of Sequences: 62578
Number of extensions: 78732
Number of successful extensions: 256
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)