BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045364
         (97 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis
           thaliana GN=EMB1687 PE=2 SV=1
          Length = 151

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 82/98 (83%), Gaps = 1/98 (1%)

Query: 1   MIVEVFLDPNKELPMDD-PIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPIT 59
           M++EVFLDP+K+L  +  PIILTQFN  KAI+D+ILVNF ECGL SSL SFQVKYVNPIT
Sbjct: 9   MLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPIT 68

Query: 60  KLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           KLCI+++S ++ ++VW  IT+V+SIGNC V+ N LD+S
Sbjct: 69  KLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106


>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1
          Length = 139

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 13  LPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQ 72
           +P D  I  +  +  K IR  +  NF + G+     S  VKY +P T   I++ S + F+
Sbjct: 27  IPSDSSITTSSLS--KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFR 84

Query: 73  KVWSTITMVRSIGNCLVLFNALDLS 97
             W+ + ++R +    V+   + +S
Sbjct: 85  LAWAALVLIRELYGKPVIIRVVRVS 109


>sp|Q969H6|POP5_HUMAN Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens GN=POP5
          PE=1 SV=1
          Length = 163

 Score = 37.4 bits (85), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 8  DPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTS 67
          DP   L +DD ++ +       +RD I       G A+    F V+Y+N  T + +++  
Sbjct: 17 DPRCRLSLDDRVLSS------LVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLRCR 70

Query: 68 MKDFQKVWSTITMVRSIGN 86
           + +Q VWS +  +  + N
Sbjct: 71 KEFYQLVWSALPFITYLEN 89


>sp|Q1JQ92|POP5_BOVIN Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5
          PE=2 SV=1
          Length = 170

 Score = 36.6 bits (83), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 8  DPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTS 67
          DP   L ++D ++ T       +RD I       G A+    F V+Y+N  T + +++  
Sbjct: 17 DPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLRCR 70

Query: 68 MKDFQKVWSTITMVRSIGN 86
           + ++ VWS +  + S+ N
Sbjct: 71 KEFYRLVWSALPFITSLEN 89


>sp|Q9DB28|POP5_MOUSE Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5
          PE=2 SV=1
          Length = 169

 Score = 32.7 bits (73), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 8  DPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTS 67
          D    L +DD ++         +RD I       G A+    F V+Y+N  T + +++  
Sbjct: 17 DARCRLSLDDRVLGG------LVRDTIARVHGAFGAAACSVGFAVRYLNAYTGVVLLRCR 70

Query: 68 MKDFQKVWSTITMVRSIGN 86
             +Q VWS +  +  + N
Sbjct: 71 KDFYQLVWSALPFITYLEN 89


>sp|Q54EP3|POP5_DICDI Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium
           discoideum GN=pop5 PE=3 SV=1
          Length = 171

 Score = 32.7 bits (73), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 5   VFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCII 64
           ++ D  K   + D  +  QF     I + +     E    +  ++ ++ YVNP T + II
Sbjct: 14  IWHDNEKSTQLSDSWLF-QF-----ISNEVKEKLGELTYEAFKKTLKIIYVNPDTNIFII 67

Query: 65  KTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           + S + ++ +W+ +T++ S     + F  + + 
Sbjct: 68  RVSFEYYKSLWTALTLITSYYGVPIYFRMVHVG 100


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,010,270
Number of Sequences: 539616
Number of extensions: 990441
Number of successful extensions: 2873
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2865
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)