Query 045364
Match_columns 97
No_of_seqs 104 out of 261
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2czv_C Ribonuclease P protein 100.0 4.9E-30 1.7E-34 170.0 6.6 85 1-97 19-103 (120)
2 2av5_A Ribonuclease P protein 100.0 9.1E-30 3.1E-34 168.6 7.1 85 1-97 19-103 (120)
3 2p9x_A Hypothetical protein PH 67.8 1.8 6E-05 27.1 0.9 17 29-45 48-64 (99)
4 3s6e_A RNA-binding protein 39; 49.3 30 0.001 21.3 4.4 65 18-92 18-88 (114)
5 1dw9_A Cyanate lyase; cyanate 47.4 23 0.00077 23.8 3.8 37 29-65 107-145 (156)
6 3v4m_A Splicing factor U2AF 65 46.4 31 0.0011 20.6 4.1 61 17-87 15-82 (105)
7 2ns6_A Mobilization protein A; 39.0 26 0.0009 23.7 3.1 28 18-45 79-106 (185)
8 1v74_B Colicin D immunity prot 30.4 77 0.0026 19.1 3.9 28 7-37 58-85 (87)
9 2eje_A General transcription f 29.4 56 0.0019 20.8 3.2 25 17-41 9-33 (114)
10 2j8a_A Histone-lysine N-methyl 29.0 1.2E+02 0.0042 19.7 5.9 64 17-92 14-91 (136)
11 2pk8_A Uncharacterized protein 28.9 1E+02 0.0034 19.2 4.3 48 20-67 39-86 (103)
12 2diu_A KIAA0430 protein; struc 28.0 76 0.0026 19.4 3.6 46 28-87 24-69 (96)
13 8tfv_A Protein (thanatin); bac 26.5 15 0.00052 16.2 0.2 13 50-62 6-18 (21)
14 2la3_A Uncharacterized protein 26.2 84 0.0029 21.5 4.0 34 21-58 38-71 (191)
15 2cqk_A C-MPL binding protein; 25.3 65 0.0022 19.8 3.0 28 19-46 7-34 (101)
16 4e17_B Catenin alpha-1; four h 24.9 24 0.00084 18.4 0.8 16 26-41 20-35 (40)
17 3ry0_A Putative tautomerase; o 23.8 70 0.0024 17.0 2.7 32 2-40 2-33 (65)
18 1h7s_A PMS1 protein homolog 2; 23.3 55 0.0019 24.3 2.8 32 3-39 332-364 (365)
19 1otf_A 4-oxalocrotonate tautom 22.4 79 0.0027 16.3 2.7 32 2-40 2-33 (62)
20 2k5n_A Putative cold-shock pro 20.2 79 0.0027 18.1 2.5 44 51-94 6-51 (74)
21 3mb2_A 4-oxalocrotonate tautom 20.0 91 0.0031 17.0 2.7 32 2-40 3-34 (72)
No 1
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=99.96 E-value=4.9e-30 Score=170.01 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=80.9
Q ss_pred CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364 1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM 80 (97)
Q Consensus 1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl 80 (97)
|+|||+++| .+|++++.++|+++++++|||+|+|.+ +++|+|||+.|+++||||+|++++.+|+|||+
T Consensus 19 ll~ei~~~~----------~l~~~~l~~~I~~av~~~fGd~G~~~~--~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtl 86 (120)
T 2czv_C 19 IAFEIISDG----------DFTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVEYLRFALML 86 (120)
T ss_dssp EEEEEECSS----------CCCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred EEEEEEECC----------CCCHHHHHHHHHHHHHHhcCcchhhcc--CceEEEEcCCCCEEEEEeCchhHHHHHHHHHh
Confidence 589999886 279999999999999999999999997 59999999999999999999999999999999
Q ss_pred hhhcCCeeeEEEEEeeC
Q 045364 81 VRSIGNCLVLFNALDLS 97 (97)
Q Consensus 81 it~i~~~~~~~rvl~vS 97 (97)
+++++|.||.|+|++||
T Consensus 87 i~~i~~~~~~~~vl~vS 103 (120)
T 2czv_C 87 VSEFNGKRLIIRTLGVS 103 (120)
T ss_dssp CCEETTEECEEEEEEEE
T ss_pred HhhCCCEEEEEEEeEEC
Confidence 99999999999999997
No 2
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=99.96 E-value=9.1e-30 Score=168.62 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=80.7
Q ss_pred CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364 1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM 80 (97)
Q Consensus 1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl 80 (97)
|+|||++++ .+|++++.++|+++++++|||+|+|.+. ++|+|||+.|+++||||+|++++.+|+|||+
T Consensus 19 ll~ei~~~~----------~l~~~~l~~~I~~av~~~fGd~G~~~~~--~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtl 86 (120)
T 2av5_A 19 IAFKVISEN----------QFNKDEIKEAIWNACLRTLGELGTAKAK--PWLIKFDETTQTGIIRSDRNHVYDVIFSLTL 86 (120)
T ss_dssp EEEEEEESS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred EEEEEEECC----------CCCHHHHHHHHHHHHHHhCCcccccccC--ccEEEEcCCCCEEEEEeCchhHHHHHHHHHH
Confidence 589999986 2799999999999999999999999974 8899999999999999999999999999999
Q ss_pred hhhcCCeeeEEEEEeeC
Q 045364 81 VRSIGNCLVLFNALDLS 97 (97)
Q Consensus 81 it~i~~~~~~~rvl~vS 97 (97)
+++++|.||.|+|++||
T Consensus 87 i~~i~~~~~~~~vl~vS 103 (120)
T 2av5_A 87 VSDINGNKAIIKVLGVS 103 (120)
T ss_dssp CCEETTEEEEEEEEEEE
T ss_pred HhhCCCEEEEEEEeEEc
Confidence 99999999999999997
No 3
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=67.80 E-value=1.8 Score=27.08 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=13.6
Q ss_pred HHHHHHHhhcCcccccc
Q 045364 29 AIRDNILVNFSECGLAS 45 (97)
Q Consensus 29 aI~~~v~~lfGd~G~~~ 45 (97)
-..++|.++||||++..
T Consensus 48 kFkeaV~~LFGEysarl 64 (99)
T 2p9x_A 48 KFKEAVSKLFGEYSARL 64 (99)
T ss_dssp HHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678899999998754
No 4
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=49.30 E-value=30 Score=21.26 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=37.4
Q ss_pred CcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEe-CCCCceEEEEeCCCChhhhHhHHHhhhhc-----CCeeeEE
Q 045364 18 PIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYV-NPITKLCIIKTSMKDFQKVWSTITMVRSI-----GNCLVLF 91 (97)
Q Consensus 18 ~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~-~~~t~~~IlRc~r~~~~~v~saLtlit~i-----~~~~~~~ 91 (97)
+..+...+.+..|.+.+.+.|+.||. + .+|.-. +...|.+.++.. ....|-..+... +|+++..
T Consensus 18 ~~e~~d~~~~~el~edl~~~f~kfG~--V---~~v~i~~~~~~G~~fV~f~-----~~e~A~~Ai~~lnG~~f~GR~i~v 87 (114)
T 3s6e_A 18 PQTEEEVGWDTEIKDDVIEECNKHGG--V---IHIYVDKNSAQGNVYVKCP-----SIAAAIAAVNALHGRWFAGKMITA 87 (114)
T ss_dssp TTTCCSTTHHHHHHHHHHHHHTTTTC--C---SEEEECTTCTTCCEEEECS-----SHHHHHHHHHHHTTCEETTEECEE
T ss_pred hHHccChhHHHHHHHHHHHHHhccCC--E---EEEEEecCCCcEEEEEEEC-----CHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456667899999999999999984 3 233332 212355655533 233444445444 4555544
Q ss_pred E
Q 045364 92 N 92 (97)
Q Consensus 92 r 92 (97)
.
T Consensus 88 ~ 88 (114)
T 3s6e_A 88 A 88 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=47.44 E-value=23 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCcccccccCCceeEEEe-CCCCc-eEEEE
Q 045364 29 AIRDNILVNFSECGLASSLRSFQVKYV-NPITK-LCIIK 65 (97)
Q Consensus 29 aI~~~v~~lfGd~G~~~~~~~l~Vky~-~~~t~-~~IlR 65 (97)
++++-+.+-|||==.+++.++++|... ||... .++|.
T Consensus 107 ~~K~li~E~FGDGIMSAIdF~~~v~k~~dp~Gd~rv~it 145 (156)
T 1dw9_A 107 TLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVIT 145 (156)
T ss_dssp HHHHHHHHHTCSEEEEEEEEEEEEEEEECTTSSEEEEEE
T ss_pred HHHHHHHHHcCcceEeeeeeeeeeEeecCCCCCceEEEE
Confidence 688999999999889999999999997 77765 66554
No 6
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=46.41 E-value=31 Score=20.63 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCC-------CCceEEEEeCCCChhhhHhHHHhhhhcCCe
Q 045364 17 DPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNP-------ITKLCIIKTSMKDFQKVWSTITMVRSIGNC 87 (97)
Q Consensus 17 ~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~-------~t~~~IlRc~r~~~~~v~saLtlit~i~~~ 87 (97)
+|..+....-++.+.+.+.+.|+.||. + .+|+-..+ ..|.+.+... ...+|-..+...+|+
T Consensus 15 ~~~~l~~d~~~~~~~~dl~~~f~k~G~--V---~~v~i~~~~~~~~~~~~G~~fV~f~-----~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 15 LPEELLDDEEYEEIVEDVRDECSKYGL--V---KSIEIPRPVDGVEVPGCGKIFVEFT-----SVFDCQKAMQGLTGR 82 (105)
T ss_dssp CGGGSSSHHHHHHHHHHHHHHHHTTSC--E---EEEECCCCBTTBCCTTTTEEEEEES-----SHHHHHHHHHHHTTC
T ss_pred CHHHccChHHHHHHHHHHHHHHHccCC--E---EEEEEeccCCCCCcCCcEEEEEEEC-----CHHHHHHHHHHhCCC
Confidence 345566666689999999999999983 2 33433322 2356666643 345566666665543
No 7
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=39.02 E-value=26 Score=23.74 Aligned_cols=28 Identities=14% Similarity=-0.058 Sum_probs=25.0
Q ss_pred CcccCHHHHHHHHHHHHHhhcCcccccc
Q 045364 18 PIILTQFNELKAIRDNILVNFSECGLAS 45 (97)
Q Consensus 18 ~~~l~~~~l~~aI~~~v~~lfGd~G~~~ 45 (97)
|..||..+=.+.+++=++++|++.|+.+
T Consensus 79 P~EL~~eq~~~L~~~f~~~~~~~~G~~~ 106 (185)
T 2ns6_A 79 PVELTLDQQKALASEFAQHLTGAERLPY 106 (185)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTTTCCE
T ss_pred CccCCHHHHHHHHHHHHHHHHHhcCCEE
Confidence 4668999999999999999999999865
No 8
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=30.36 E-value=77 Score=19.12 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=21.4
Q ss_pred eCCCCCCCCCCCcccCHHHHHHHHHHHHHhh
Q 045364 7 LDPNKELPMDDPIILTQFNELKAIRDNILVN 37 (97)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~l 37 (97)
|.|+.+ .++-.+++..|.+.+++.+.++
T Consensus 58 Y~pd~~---r~~yElde~~Lr~ev~~~L~k~ 85 (87)
T 1v74_B 58 FEPDAD---RANYEIDDNGLKVEVRSILEKF 85 (87)
T ss_dssp BCCSTT---CCTTCBCHHHHHHHHHHHHHHT
T ss_pred hCCCcc---ccccccChHHHHHHHHHHHHHh
Confidence 555543 2567899999999999988764
No 9
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.35 E-value=56 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.3
Q ss_pred CCcccCHHHHHHHHHHHHHhhcCcc
Q 045364 17 DPIILTQFNELKAIRDNILVNFSEC 41 (97)
Q Consensus 17 ~~~~l~~~~l~~aI~~~v~~lfGd~ 41 (97)
....++..+....+|++|.++|-..
T Consensus 9 ~~~~~s~~d~i~~LrkqVedLFn~k 33 (114)
T 2eje_A 9 DNERLSKVEKARQLREQVNDLFSRK 33 (114)
T ss_dssp STTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999988654
No 10
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=29.00 E-value=1.2e+02 Score=19.71 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=32.6
Q ss_pred CCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCC----ceEEEEeCC---CChhhhHhHHHhhh-------
Q 045364 17 DPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPIT----KLCIIKTSM---KDFQKVWSTITMVR------- 82 (97)
Q Consensus 17 ~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t----~~~IlRc~r---~~~~~v~saLtlit------- 82 (97)
+|...++.+|. .+|..|| .+ .++.+. .||.| |.|.++-.- ....--.+|...+.
T Consensus 14 ~~~~tte~~Lk--------~~Fs~fG--eV-~~~~li-~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 14 TTTNIQDISIK--------NYFKKYG--EI-SHFEAF-NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCCCCCHHHHH--------HHHHTTS--CC-SEEEEE-ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CCCCCCHHHHH--------HHHHhcC--Ce-EEEEEE-ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 34455665554 4555555 22 234444 59988 456777762 12233344666666
Q ss_pred hcCCeeeEEE
Q 045364 83 SIGNCLVLFN 92 (97)
Q Consensus 83 ~i~~~~~~~r 92 (97)
.|+|+++.++
T Consensus 82 ~I~Gr~irV~ 91 (136)
T 2j8a_A 82 FIMGFKFEVI 91 (136)
T ss_dssp EETTEEEEEE
T ss_pred eecCcEEEEE
Confidence 3455555443
No 11
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=28.87 E-value=1e+02 Score=19.15 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=40.0
Q ss_pred ccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeC
Q 045364 20 ILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTS 67 (97)
Q Consensus 20 ~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~ 67 (97)
.|-....++.+.+.+.+-||+-|-=.-.++|+|-+.++-.+=|++--+
T Consensus 39 iL~G~eayef~~e~v~~e~g~e~~~l~~s~LkV~~ieELG~DAVV~DS 86 (103)
T 2pk8_A 39 ILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDAVVIDS 86 (103)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCCCCCEETTEEEEECGGGTTEEEEECT
T ss_pred EEEcHHHHHHHHHHHhHhhccccchhhccCceEEEHHhcCCceEEEeh
Confidence 356788999999999999999887776778999999988888877544
No 12
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.96 E-value=76 Score=19.39 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHhhhhcCCe
Q 045364 28 KAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNC 87 (97)
Q Consensus 28 ~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtlit~i~~~ 87 (97)
+.+++.+.++|+.||.-. ++| ..|.|+++- ...-+|-..+.+.+|.
T Consensus 24 ~~lk~~L~~lF~~yGG~V----l~V-----tgG~AfV~F-----~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 24 KSVSNRLRRLSDNCGGKV----LSI-----TGCSAILRF-----INQDSAERAQKRMENE 69 (96)
T ss_dssp HHHHHHHHHHHHTTTCCE----EEC-----CTTCEEEEE-----SSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCee----EEE-----ecCEEEEEE-----CCHHHHHHHHHHhcCC
Confidence 556777888999997211 222 125666653 3455666666666553
No 13
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=26.50 E-value=15 Score=16.24 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=9.9
Q ss_pred eeEEEeCCCCceE
Q 045364 50 FQVKYVNPITKLC 62 (97)
Q Consensus 50 l~Vky~~~~t~~~ 62 (97)
.-++|+|..|+.|
T Consensus 6 vpiiycnrrtgkc 18 (21)
T 8tfv_A 6 VPIIYCNRRTGKC 18 (26)
T ss_dssp CCCEEEEGGGTEE
T ss_pred ccEEEEcCcccce
Confidence 4578999888765
No 14
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=26.15 E-value=84 Score=21.50 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCC
Q 045364 21 LTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPI 58 (97)
Q Consensus 21 l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~ 58 (97)
|....+.+.||+.+...=...| ...++|.|||+.
T Consensus 38 laAG~vrn~VWn~L~g~~~~~~----i~DiDviYFD~d 71 (191)
T 2la3_A 38 LAAGSVRNFIWNLLSDKSPFDH----ETDIDVIFFDPD 71 (191)
T ss_dssp EETHHHHHHHHGGGTTSCTTCC----CSEEEEEECCTT
T ss_pred hhhhhhHhhHHHHhcCCCCCCC----CCceeEEEECCC
Confidence 4556677777776543322222 256999999984
No 15
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=25.33 E-value=65 Score=19.81 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.4
Q ss_pred cccCHHHHHHHHHHHHHhhcCccccccc
Q 045364 19 IILTQFNELKAIRDNILVNFSECGLASS 46 (97)
Q Consensus 19 ~~l~~~~l~~aI~~~v~~lfGd~G~~~~ 46 (97)
..++..++.+.|++.|.-+|+|-....-
T Consensus 7 ~~~~~~~l~~~I~~QvEyYFSd~NL~~D 34 (101)
T 2cqk_A 7 GAVSTEDLKECLKKQLEFCFSRENLSKD 34 (101)
T ss_dssp CSCCHHHHHHHHHHHHHHHTSHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhhcchhhhccC
Confidence 4578999999999999999999887754
No 16
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=24.87 E-value=24 Score=18.42 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhcCcc
Q 045364 26 ELKAIRDNILVNFSEC 41 (97)
Q Consensus 26 l~~aI~~~v~~lfGd~ 41 (97)
--++||++++.++-||
T Consensus 20 eCnavrqALQdLlseY 35 (40)
T 4e17_B 20 ECNAVRQALQDLLSEY 35 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999999888776
No 17
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=23.81 E-value=70 Score=17.03 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCc
Q 045364 2 IVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSE 40 (97)
Q Consensus 2 l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd 40 (97)
+++|-+-+|+. +. ..+.|.++|-+++.+.+|-
T Consensus 2 ~i~I~~~~Grs-----~e--qk~~L~~~it~~~~~~lg~ 33 (65)
T 3ry0_A 2 LIRVTLLEGRS-----PQ--EVAALGEALTAAAHETLGT 33 (65)
T ss_dssp EEEEEEESCCC-----HH--HHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCC-----HH--HHHHHHHHHHHHHHHHhCc
Confidence 45666666652 22 4778899999999988875
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=23.27 E-value=55 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEeCCCCCCCCCCCccc-CHHHHHHHHHHHHHhhcC
Q 045364 3 VEVFLDPNKELPMDDPIIL-TQFNELKAIRDNILVNFS 39 (97)
Q Consensus 3 ~ei~~~~~~~~~~~~~~~l-~~~~l~~aI~~~v~~lfG 39 (97)
+.+..+|.+. ...+ +++.+++.|++++.+.|+
T Consensus 332 vDvNVhP~K~-----eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 332 VDINVTPDKR-----QILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp EEEC-----------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred cceEECCCcC-----EEEEcCHHHHHHHHHHHHHHHhc
Confidence 3455556553 3343 688999999999999987
No 19
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.40 E-value=79 Score=16.26 Aligned_cols=32 Identities=3% Similarity=0.202 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCc
Q 045364 2 IVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSE 40 (97)
Q Consensus 2 l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd 40 (97)
+++|-.-+++. +. ..+.|.++|-+.+.+.+|-
T Consensus 2 ~i~I~~~~grs-----~e--~k~~l~~~i~~~l~~~lg~ 33 (62)
T 1otf_A 2 IAQLYIIEGRT-----DE--QKETLIRQVSEAMANSLDA 33 (62)
T ss_dssp EEEEEEESCCC-----HH--HHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCC-----HH--HHHHHHHHHHHHHHHHhCc
Confidence 35665555542 22 4678888888888888775
No 20
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.22 E-value=79 Score=18.09 Aligned_cols=44 Identities=11% Similarity=-0.015 Sum_probs=27.4
Q ss_pred eEEEeCCCCceEEEEeCCCChhhhHh-HHHhh-hhcCCeeeEEEEE
Q 045364 51 QVKYVNPITKLCIIKTSMKDFQKVWS-TITMV-RSIGNCLVLFNAL 94 (97)
Q Consensus 51 ~Vky~~~~t~~~IlRc~r~~~~~v~s-aLtli-t~i~~~~~~~rvl 94 (97)
.||.||+..|.+.|...-+..+++-. +|.-- +--.|.+|.|.+.
T Consensus 6 ~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~g~l~~G~~V~F~~~ 51 (74)
T 2k5n_A 6 TITTWFKDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPT 51 (74)
T ss_dssp EEEEEETTTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEE
T ss_pred EEEEEECCCCeEEEecCCCCceEEEHhHcccCCCCCCCCEEEEEEE
Confidence 49999999999999987654333322 22211 2225667777653
No 21
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.04 E-value=91 Score=17.02 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCc
Q 045364 2 IVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSE 40 (97)
Q Consensus 2 l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd 40 (97)
+++|-..+++. +. ..+.|.++|-+.+.+.+|-
T Consensus 3 ~I~I~~~~grs-----~e--qK~~L~~~it~~l~~~lg~ 34 (72)
T 3mb2_A 3 LLRITMLEGRS-----TE--QKAELARALSAAAAAAFDV 34 (72)
T ss_dssp EEEEEEESCCC-----HH--HHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCC-----HH--HHHHHHHHHHHHHHHHhCC
Confidence 45666666652 22 4678889999999888875
Done!