BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045366
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGY-------------------------LSFLRSINLVNN 97
+ GLDL G + PF G + L+ ++L N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 98 SLRAEIPHEVGNL-FKLQNLTLTNNYFSGKIPTNLSRCSN----LVKFEASNNKLEGEIP 152
E+P + NL L L L++N FSG I NL C N L + NN G+IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIP 411
Query: 153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISF 212
+SN + L+++ N+L G +P+S+G+LS L+++ + N L G IP +V+ L +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
+ N +G P ++N ++L +I + NR G +P IG L NL +S N+ +G++
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNI 530
Query: 272 QDSLSNTTNLHKLDINRN 289
L + +L LD+N N
Sbjct: 531 PAELGDCRSLIWLDLNTN 548
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY 122
++ L L + G + +G LS LR + L N L EIP E+ + L+ L L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 123 FSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNL 182
+G+IP+ LS C+NL SNN+L GEIP I L IL ++ N G +PA +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 183 STLQEINVNGNRLSGRIPSTRSHVRNLISFNV----------------------GLNQFS 220
+L +++N N +G IP+ I+ N L +F
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 221 GM-------------------------FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLP 255
G+ P +N S+ ++ + N G +P +IG ++P
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMP 656
Query: 256 NLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L + N+++GS+ D + + L+ LD++ N
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 14/202 (6%)
Query: 58 CGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLT 117
C + + L L++ G + P + S L S++L N L IP +G+L KL++L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 118 LTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA 177
L N G+IP L L N L GEIP+ +SN ++++ N L G++P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP----------PIN 227
IG L L + ++ N SG IP+ R+LI ++ N F+G P N
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 228 NISSLEYIFIH----KNRYHGS 245
I+ Y++I K HG+
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGA 590
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 57/276 (20%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LD+ + G S + + L+ +N+ +N IP L LQ L+L N F+G+I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285
Query: 128 PTNLS-RCSNLVKFEASNNKLEGEIPA----------------------EISNLLK---F 161
P LS C L + S N G +P + LLK
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 162 QILNIAKNHLKGQLPASIGNLS---------------------------TLQEINVNGNR 194
++L+++ N G+LP S+ NLS TLQE+ + N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 195 LSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVN 253
+G+IP T S+ L+S ++ N SG P + ++S L + + N G +P ++ +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MY 464
Query: 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
+ L I+ N+LTG + LSN TNL+ + ++ N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 15/242 (6%)
Query: 56 VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYL-----SFLRSINLVNNSLRAEIPHEVGNL 110
V+ G + + LDL SI G + VG++ L+ + + N + ++ +V
Sbjct: 144 VSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 199
Query: 111 FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH 170
L+ L +++N FS IP L CS L + S NKL G+ IS + ++LNI+ N
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 171 LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV-RNLISFNVGLNQFSGMFPPI-NN 228
G +P L +LQ +++ N+ +G IP S L ++ N F G PP +
Sbjct: 259 FVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN-TTNLHKLDIN 287
S LE + + N + G LP+D + + L+ +S N +G L +SL+N + +L LD++
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 288 RN 289
N
Sbjct: 377 SN 378
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 17/226 (7%)
Query: 54 TGVTCGHRHQRVIGLDLRHQSIRGFLSPF--VGYLSFLRSINLVNNSLRAEIPHEVGNLF 111
+G C + LDL S+ G ++ +G S L+ +N+ +N+L + P +V
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 148
Query: 112 KLQNL---TLTNNYFSGK--IPTNLSR-CSNLVKFEASNNKLEGEIPAEISNLLKFQILN 165
KL +L L+ N SG + LS C L S NK+ G++ ++S + + L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206
Query: 166 IAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225
++ N+ +P +G+ S LQ ++++GN+LSG S L N+ NQF G PP
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 226 INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
+ + SL+Y+ + +N++ G +P + L +SGN+ G++
Sbjct: 266 L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNL--------------TLTNNYFSGKIPTN 130
+++ R + + N+ ++ E H GNL + Q + +T+ + G
Sbjct: 569 FIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 131 LSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINV 190
+++ + S N L G IP EI ++ ILN+ N + G +P +G+L L +++
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 191 NGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 232
+ N+L GRIP S + L ++ N SG P + +
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LD+ + + G++ +G + +L +NL +N + IP EVG+L L L L++N G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 128 PTNLSRCSNLVKFEASNNKLEGEIP 152
P +S + L + + SNN L G IP
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGY-------------------------LSFLRSINLVNN 97
+ GLDL G + PF G + L+ ++L N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 98 SLRAEIPHEVGNL-FKLQNLTLTNNYFSGKIPTNLSRCSN----LVKFEASNNKLEGEIP 152
E+P + NL L L L++N FSG I NL C N L + NN G+IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIP 408
Query: 153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISF 212
+SN + L+++ N+L G +P+S+G+LS L+++ + N L G IP +V+ L +
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
+ N +G P ++N ++L +I + NR G +P IG L NL +S N+ +G++
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNI 527
Query: 272 QDSLSNTTNLHKLDINRN 289
L + +L LD+N N
Sbjct: 528 PAELGDCRSLIWLDLNTN 545
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY 122
++ L L + G + +G LS LR + L N L EIP E+ + L+ L L N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 123 FSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNL 182
+G+IP+ LS C+NL SNN+L GEIP I L IL ++ N G +PA +G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 183 STLQEINVNGNRLSGRIPSTRSHVRNLISFNV----------------------GLNQFS 220
+L +++N N +G IP+ I+ N L +F
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 221 GM-------------------------FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLP 255
G+ P +N S+ ++ + N G +P +IG ++P
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMP 653
Query: 256 NLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L + N+++GS+ D + + L+ LD++ N
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 14/202 (6%)
Query: 58 CGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLT 117
C + + L L++ G + P + S L S++L N L IP +G+L KL++L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 118 LTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA 177
L N G+IP L L N L GEIP+ +SN ++++ N L G++P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP----------PIN 227
IG L L + ++ N SG IP+ R+LI ++ N F+G P N
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 228 NISSLEYIFIH----KNRYHGS 245
I+ Y++I K HG+
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGA 587
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 57/276 (20%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LD+ + G S + + L+ +N+ +N IP L LQ L+L N F+G+I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 282
Query: 128 PTNLS-RCSNLVKFEASNNKLEGEIPA----------------------EISNLLK---F 161
P LS C L + S N G +P + LLK
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 162 QILNIAKNHLKGQLPASIGNLS---------------------------TLQEINVNGNR 194
++L+++ N G+LP S+ NLS TLQE+ + N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 195 LSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVN 253
+G+IP T S+ L+S ++ N SG P + ++S L + + N G +P ++ +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MY 461
Query: 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
+ L I+ N+LTG + LSN TNL+ + ++ N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 15/242 (6%)
Query: 56 VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYL-----SFLRSINLVNNSLRAEIPHEVGNL 110
V+ G + + LDL SI G + VG++ L+ + + N + ++ +V
Sbjct: 141 VSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 196
Query: 111 FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH 170
L+ L +++N FS IP L CS L + S NKL G+ IS + ++LNI+ N
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 171 LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV-RNLISFNVGLNQFSGMFPPI-NN 228
G +P L +LQ +++ N+ +G IP S L ++ N F G PP +
Sbjct: 256 FVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN-TTNLHKLDIN 287
S LE + + N + G LP+D + + L+ +S N +G L +SL+N + +L LD++
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 288 RN 289
N
Sbjct: 374 SN 375
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 109/212 (51%), Gaps = 14/212 (6%)
Query: 68 LDLRHQSIRGFLSPF--VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNL---TLTNNY 122
LDL S+ G ++ +G S L+ +N+ +N+L + P +V KL +L L+ N
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANS 159
Query: 123 FSGK--IPTNLSR-CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI 179
SG + LS C L S NK+ G++ ++S + + L+++ N+ +P +
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-L 216
Query: 180 GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHK 239
G+ S LQ ++++GN+LSG S L N+ NQF G PP+ + SL+Y+ + +
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAE 275
Query: 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
N++ G +P + L +SGN+ G++
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNL--------------TLTNNYFSGKIPTN 130
+++ R + + N+ ++ E H GNL + Q + +T+ + G
Sbjct: 566 FIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 131 LSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINV 190
+++ + S N L G IP EI ++ ILN+ N + G +P +G+L L +++
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 191 NGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 232
+ N+L GRIP S + L ++ N SG P + +
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LD+ + + G++ +G + +L +NL +N + IP EVG+L L L L++N G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 128 PTNLSRCSNLVKFEASNNKLEGEIP 152
P +S + L + + SNN L G IP
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 117/282 (41%), Gaps = 58/282 (20%)
Query: 40 AMNSWNNSINLC--QWTGVTCGHRHQ--RVIGLDLRHQSI-RGFLSPF----VGYLSFLR 90
++SW + + C W GV C Q RV LDL ++ + + P + YL+FL
Sbjct: 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 91 SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGE 150
I +NN L IP + L +L L +T+ SG IP LS+ LV
Sbjct: 83 -IGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT----------- 129
Query: 151 IPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI 210
L+ + N L G LP SI +L L I +GNR+SG IP + L
Sbjct: 130 -------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 211 -SFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG--------------------SLPLD 249
S + N+ +G PP +L ++ + +N G SL D
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 250 IG-VNL-PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
+G V L NL + N + G+L L+ LH L+++ N
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKL-QNLTLTNN 121
+ ++ LD + ++ G L P + L L I N + IP G+ KL ++T++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK--------- 172
+GKIP + NL + S N LEG+ + Q +++AKN L
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 173 --------------GQLPASIGNLSTLQEINVNGNRLSGRIP 200
G LP + L L +NV+ N L G IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN 121
GLDLR+ I G L + L FL S+N+ N+L EIP + GNL + NN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 73 QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLT---LTNNYFSGKIPT 129
+S++G + YL +R + L N L H++ L +L NLT LT N
Sbjct: 54 KSVQG-----IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNG 103
Query: 130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
+ +NL + N+L+ L LN+A N L+ L+ L E++
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRYHGS 245
++ N+L + L + NQ G+F + ++SL+YI++H N + +
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCT 220
Query: 246 LP 247
P
Sbjct: 221 CP 222
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLT---LTNNYFSGKIPTNLSRCSNLVKFEA 142
L+ L+ + LV N L++ +P G KL NLT L +N + +NL + +
Sbjct: 108 LTNLKELVLVENQLQS-LPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
S N+L+ L + + L + +N LK L++LQ I ++ N P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224
Query: 203 R 203
R
Sbjct: 225 R 225
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 102 EIPHEVGNLFKLQNLTLTNNYFSGKIPTN--LSRCSNLVKFEASNNKLEGEIPAEISNLL 159
EIP ++ L L +N G+I ++ R +LVK E N+L G P
Sbjct: 22 EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF 219
Q L + +N +K L L+ +N+ N++S +P + H+ +L S N+ N F
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 63 QRVIGLDLRHQSIRGFLSPFVGYLSF--LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120
+++ LD +H +++ +S F +LS L +++ + R L L+ L +
Sbjct: 396 EQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 121 NYFSGK-IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI 179
N F +P + NL + S +LE P ++L Q+LN+A N LK
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 180 GNLSTLQEINVNGNRLSGRIP 200
L++LQ+I ++ N P
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCP 535
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 79 LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLV 138
+ PF G LR + + L+A +P E+ L L L NN S + +L
Sbjct: 26 MCPF-GCHCHLRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLY 81
Query: 139 KFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR 198
NNK+ S L K Q L I+KNHL ++P ++ S+L E+ ++ NR+
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKV 138
Query: 199 IPSTRSHVRNLISFNVGLNQF--SGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPN 256
S +RN+ +G N SG P + L Y+ I + + G +P D+ L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNE 197
Query: 257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L + N + + L + L++L + N
Sbjct: 198 LH---LDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LDL++ I L L ++ LVNN + L KLQ L ++ N+ +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK--GQLPASIGNLSTL 185
P NL S+LV+ +N++ S L + + N L+ G P + L L
Sbjct: 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-L 174
Query: 186 QEINVNGNRLSG 197
+ ++ +L+G
Sbjct: 175 NYLRISEAKLTG 186
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 27/170 (15%)
Query: 92 INLVNNSLRAEIPHEVGNLFKLQNLTLT----NNYFSGKIPT-NLSRCSNL-VKFEASNN 145
+N N + L +LQ L L N+F + T N+S L V + N+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGRIPS 201
A ++L +LN++ N L G LP + + ++++ NR+ IP
Sbjct: 418 HAYDRTCAWAESIL---VLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPK 467
Query: 202 TRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRYHGSLP 247
+H++ L NV NQ G+F + ++SL+YI++H N + + P
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCTCP 514
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 116 LTLTNNYFSGKIPTNLSRC--SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG 173
L L++N +G + RC + + NN++ IP ++++L Q LN+A N LK
Sbjct: 433 LNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS 487
Query: 174 QLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
L++LQ I ++ N P R
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL 175
L L NN + + NL NNK+ P + L+K + L ++KN LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 176 PASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS------GMFPPINNI 229
P + TLQE+ V+ N ++ S + + +I +G N G F +
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF---QGM 170
Query: 230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L YI I ++P + P+L + GN +T SL NL KL ++ N
Sbjct: 171 KKLSYIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL 175
L L NN + + NL NNK+ P + L+K + L ++KN LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 176 PASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS------GMFPPINNI 229
P + TLQE+ V+ N ++ S + + +I +G N G F +
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF---QGM 170
Query: 230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L YI I ++P + P+L + GN +T SL NL KL ++ N
Sbjct: 171 KKLSYIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 84 GYLSFLRSINLVNNSLR--AEIPHEVGNLFKLQNLTLTNNYFS-GKIPTNLSRCSNLVKF 140
G+L+ L ++ L N L+ ++I + LQ L ++ N S + + S +L+
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 141 EASNNKLEGEI----PAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196
S+N L I P I ++L++ N +K +P + L LQE+NV N+L
Sbjct: 405 NMSSNILTDTIFRCLPPRI------KVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK 457
Query: 197 GRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
+P G+F + ++SL+ I++H N + S P
Sbjct: 458 S-VP-------------------DGIF---DRLTSLQKIWLHTNPWDCSCP 485
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR 194
++L + NKL+ + L LN++ N L+ L+ L+E+ +N N+
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 195 LSGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRYHGSLP 247
L + L + NQ G+F + ++SL+YI++H N + + P
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCTCP 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146
S +++ +L + + A + + L+ LTL N + ++L+K S N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 147 LEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
L G I + + NL K ++L+++ NH++ S L L+E+ ++ N+L +P
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP----- 387
Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
G+F + ++SL+ I++H N + S P
Sbjct: 388 --------------DGIF---DRLTSLQKIWLHTNPWDCSCP 412
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAK 168
L LQ L+ ++N + P L+ + L + + S+NK+ + A+++NL + L
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATN 204
Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---- 224
N + P +G L+ L E+++NGN+L + T + + NL ++ NQ S + P
Sbjct: 205 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 225 -----------------PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL 267
P+ +++L + +++N+ P+ NL NL + + NN+
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNI 317
Query: 268 T 268
+
Sbjct: 318 S 318
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAK 168
L LQ L+ ++N + P L+ + L + + S+NK+ + A+++NL + L
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATN 204
Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---- 224
N + P +G L+ L E+++NGN+L + T + + NL ++ NQ S + P
Sbjct: 205 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 225 -----------------PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL 267
P+ +++L + +++N+ P+ NL NL + + NN+
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNI 317
Query: 268 T 268
+
Sbjct: 318 S 318
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAK 168
L LQ L ++N + P L+ + L + + S+NK+ + A+++NL + L
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATN 204
Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---- 224
N + P +G L+ L E+++NGN+L + T + + NL ++ NQ S + P
Sbjct: 205 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 225 -----------------PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL 267
P+ +++L + +++N+ P+ NL NL + + NN+
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNI 317
Query: 268 T 268
+
Sbjct: 318 S 318
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LDL+ + S L+ LR + L +N L+ L L+ L +T+N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
+ NL + N+L+ P +L K L++ N L+ L++L+E
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 188 INVNGNRLSGRIPS 201
+ + N+L R+P
Sbjct: 162 LRLYNNQLK-RVPE 174
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLK-FQILNIAKNHLK 172
+ L L +N S R + L ++NKL+ +PA I LK + L + N L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 173 GQLPASI-GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNIS 230
LP + L L E+ ++ N+L P + L ++G N+ + + + ++
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
SL+ + ++ N+ +P L L+ + N L + + + L L + N
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2F5T|X Chain X, Crystal Structure Of The Sugar Binding Domain Of The
Archaeal Transcriptional Regulator Trmb
Length = 233
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 147 LEGEI---PAEISNLLKFQILNIAKNHLKGQ-LPASI-------GNLSTLQEINVNGNRL 195
LE EI P +I F ++ KNHLK + + A I G L TL R+
Sbjct: 131 LEKEIIGNPKDIRFFAMFHAVDFVKNHLKNRNIYAEITGKNLESGRLETLT------GRV 184
Query: 196 SGRIPSTRSHVRNL-ISFNVGLNQFSGMFPPINNISSLEYIFI 237
G S R V N+ + G+ + GMF I + S E FI
Sbjct: 185 VGYTLSLREAVNNIHLETENGVVKVGGMFAVIEDYESTEIKFI 227
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162
IP +V L+ L N F+ +P LS +L + SNN++ SN+ +
Sbjct: 29 IPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 163 ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196
L ++ N L+ P + L +L+ ++++GN +S
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 168 KNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI 226
KN +LPA++ + ++ +N+N ++ ++ + +G N + P +
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 227 -NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD 285
N+ L + + +N SLP I N P L +S NNL D+ TT+L L
Sbjct: 113 FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 286 INRN 289
++ N
Sbjct: 172 LSSN 175
>pdb|3QPH|A Chain A, The Three-Dimensional Structure Of Trmb, A Global
Transcriptional Regulator Of The Hyperthermophilic
Archaeon Pyrococcus Furiosus In Complex With Sucrose
Length = 342
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 147 LEGEI---PAEISNLLKFQILNIAKNHLKGQ-LPASI-------GNLSTLQEINVNGNRL 195
LE EI P +I F ++ KNHLK + + A I G L TL R+
Sbjct: 240 LEKEIIGNPKDIRFFAMFHAVDFVKNHLKNRNIYAEITGKNLESGRLETLT------GRV 293
Query: 196 SGRIPSTRSHVRNL-ISFNVGLNQFSGMFPPINNISSLEYIFI 237
G S R V N+ + G+ + GMF I + S E FI
Sbjct: 294 VGYTLSLREAVNNIHLETENGVVKVGGMFAVIEDYESTEIKFI 336
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN-HLK 172
Q + L N S + C NL +N L A + L + L+++ N L+
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 173 GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS-GMFPPINNISS 231
PA+ L L ++++ GL + G+F +++
Sbjct: 94 SVDPATFHGLGRLHTLHLD---------------------RCGLQELGPGLF---RGLAA 129
Query: 232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L+Y+++ N +LP D +L NL + GN ++ + + +L +L +++N
Sbjct: 130 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 155 ISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV 214
+SNL+K L I N + +++ NL+ L+E+ +N + +S P +++ S N+
Sbjct: 84 LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNL 139
Query: 215 GLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPL 248
G N P++N + L Y+ + +++ P+
Sbjct: 140 GANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPI 173
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN-HLK 172
Q + L N S + C NL +N L A + L + L+++ N L+
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 173 GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS-GMFPPINNISS 231
PA+ L L ++++ GL + G+F +++
Sbjct: 95 SVDPATFHGLGRLHTLHLD---------------------RCGLQELGPGLF---RGLAA 130
Query: 232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
L+Y+++ N +LP D +L NL + GN ++ + + +L +L +++N
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 168 KNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI 226
KN +LPA++ + ++ +N+N ++ ++ + +G N + P +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 227 -NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD 285
N+ L + + +N SLP I N P L +S NNL D+ TT+L L
Sbjct: 119 FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 286 INRN 289
++ N
Sbjct: 178 LSSN 181
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 2/144 (1%)
Query: 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
LDL I+ L + L N + A P NLF L+ L L +N I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 128 PTNL-SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
P + + SNL K + S NK+ + +L + L + N L + L++L+
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 187 EINVNGNRLSGRIPSTRSHVRNLI 210
++ + L+ SH+ LI
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLI 179
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 22/72 (30%)
Query: 150 EIPAEISNLLKFQILNIAKNHLKG----------------------QLPASIGNLSTLQE 187
E+PAEI NL ++L+++ N L LP GNL LQ
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320
Query: 188 INVNGNRLSGRI 199
+ V GN L +
Sbjct: 321 LGVEGNPLEKQF 332
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 89 LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
L ++ L N LRA +P + +L +L+ L++ ++P L+ +AS
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA------STDAS----- 176
Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN 208
E L+ Q L + ++ LPASI NL L+ + + + LS P+ H+
Sbjct: 177 ----GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIH-HLPK 230
Query: 209 LISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDI 250
L ++ +PPI + L+ + + +LPLDI
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 32/160 (20%)
Query: 131 LSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
L+ + L + + S+NK+ + A+++NL IA N+ + +G L+ L E++
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELS 222
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---------------------PINN 228
+NGN+L + T + + NL ++ NQ S + P P+
Sbjct: 223 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
+++L + +++N+ P+ NL NL + + NN++
Sbjct: 281 LTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNIS 317
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 32/160 (20%)
Query: 131 LSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
L+ + L + + S+NK+ + A+++NL IA N+ + +G L+ L E++
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELS 227
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---------------------PINN 228
+NGN+L + T + + NL ++ NQ S + P P+
Sbjct: 228 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
+++L + +++N+ P+ NL NL + + NN++
Sbjct: 286 LTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNIS 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 32/160 (20%)
Query: 131 LSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
L+ + L + + S+NK+ + A+++NL + L N + P +G L+ L E++
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATNNQISDITP--LGILTNLDELS 222
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---------------------PINN 228
+NGN+L + T + + NL ++ NQ S + P P+
Sbjct: 223 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
+++L + +++N+ P+ NL NL + + NN++
Sbjct: 281 LTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNIS 317
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 32/160 (20%)
Query: 131 LSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
L+ + L + + S+NK+ + A+++NL IA N+ + +G L+ L E++
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELS 226
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP---------------------PINN 228
+NGN+L + T + + NL ++ NQ S + P P+
Sbjct: 227 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 284
Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
+++L + +++N+ P+ NL NL + + NN++
Sbjct: 285 LTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNIS 321
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
+PT + S+ + E +NKL+ L + L++++N ++ L+ L
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRY 242
+ ++ N+L + L + NQ G+F + ++SL+ I++H N +
Sbjct: 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF---DRLTSLQKIWLHTNPW 136
Query: 243 HGSLP 247
S P
Sbjct: 137 DCSCP 141
>pdb|3AU0|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 339
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 104 PHEVGNLFKLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 147
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 31 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 78
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 150 EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL 209
EIP ++ L+K L+++ NHL P S L LQ++ + +++ + ++++L
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 210 ISFNVGLNQFS----GMFPPINNISSLEYIFIHKNRY 242
+ N+ N + +F P+++ LE I +H N +
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHH---LERIHLHHNPW 291
>pdb|3AT0|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 104 PHEVGNLFKLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 147
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 30 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 77
>pdb|3ASW|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 328
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 104 PHEVGNLFKLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 147
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 30 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 77
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 98 SLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN 157
SL +P+ L LT G +P L + S+N+L+ +P
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQT 98
Query: 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN 217
L +L+++ N L ++ L LQE+ + GN L P + L ++ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 218 QFSGMFPP---INNISSLEYIFIHKNRYH 243
Q + + P +N + +L+ + + +N +
Sbjct: 159 QLTEL--PAGLLNGLENLDTLLLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 98 SLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN 157
SL +P+ L LT G +P L + S+N+L+ +P
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQT 98
Query: 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN 217
L +L+++ N L ++ L LQE+ + GN L P + L ++ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 218 QFSGMFPP---INNISSLEYIFIHKNRYH 243
Q + + P +N + +L+ + + +N +
Sbjct: 159 QLTEL--PAGLLNGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 98 SLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN 157
SL +P+ L LT G +P L + S+N+L+ +P
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQT 98
Query: 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN 217
L +L+++ N L ++ L LQE+ + GN L P + L ++ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 218 QFSGMFPP---INNISSLEYIFIHKNRYH 243
Q + + P +N + +L+ + + +N +
Sbjct: 159 QLTEL--PAGLLNGLENLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 98 SLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN 157
SL +P+ L LT G +P L + S+N+L+ +P
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQT 98
Query: 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN 217
L +L+++ N L ++ L LQE+ + GN L P + L ++ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 218 QFSGMFPP---INNISSLEYIFIHKNRYH 243
Q + + P +N + +L+ + + +N +
Sbjct: 159 QLTEL--PAGLLNGLENLDTLLLQENSLY 185
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNN---KLEGEIPAEISNLLKFQILNIAKNHLK 172
L LT+N PTN +R S L +A N KLE E+ +I LLK +LN+ N L
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL-CQILPLLK--VLNLQHNELS 86
Query: 173 GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221
+ + L E+++ N + + + +NLI ++ N S
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 24/179 (13%)
Query: 106 EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLLKFQIL 164
++ NL LQ L L+ N G C L + + L + P + NL ++L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRL-SGRIPSTRSHVRNLISFNVGLNQFSGMF 223
N++ L + L L+ +N+ GN G I T NL+ Q G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT-----NLL-------QMVGSL 477
Query: 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282
I +SS + I + +HG L N+ +S N+LTG D+LS+ L+
Sbjct: 478 E-ILILSSCNLLSIDQQAFHG---------LRNVNHLDLSHNSLTGDSMDALSHLKGLY 526
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 70 LRHQSIRGFLSPF---VGYLSFL---RSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNN 121
L H IRG + VG L L ++++L +N + A ++ NL LQ L L++N
Sbjct: 324 LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQLPASIG 180
G C L + + +L P + NL Q+LN+ L +
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLA 443
Query: 181 NLSTLQEINVNGNRL-SGRIPST 202
L L+ +N+ GN G I T
Sbjct: 444 GLPVLRHLNLKGNHFQDGTITKT 466
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA 177
NN + + T+L + L E N+LEG++PA + +K LN+A N + ++PA
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPA 370
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 212 FNVGLNQFSGMFPPINNISSLEYIFI---HKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
FN GL MFP + + S + FI N Y S+P++ L N + NN
Sbjct: 113 FNTGLK----MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Query: 269 GSLQDSLSNTTNLHKLDINRN 289
S+Q N T L + +N+N
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKN 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,004,288
Number of Sequences: 62578
Number of extensions: 313181
Number of successful extensions: 829
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 211
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)