Query 045366
Match_columns 289
No_of_seqs 236 out of 3713
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-34 2.7E-39 282.1 20.8 257 31-289 27-318 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-29 5.3E-34 245.2 17.0 226 63-289 140-366 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.4E-27 9.4E-32 204.0 2.9 257 33-289 143-426 (873)
4 KOG4194 Membrane glycoprotein 99.9 7.4E-27 1.6E-31 202.5 1.4 226 63-289 125-375 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.3E-28 184.7 -3.2 220 63-289 126-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.4E-28 184.6 -4.8 220 64-289 104-349 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 3E-24 6.4E-29 179.0 -9.1 218 63-289 68-285 (565)
8 KOG4237 Extracellular matrix p 99.8 2.3E-22 4.9E-27 167.4 0.2 226 63-289 67-356 (498)
9 KOG0472 Leucine-rich repeat pr 99.8 1.3E-22 2.8E-27 169.3 -8.9 216 63-289 91-307 (565)
10 KOG0618 Serine/threonine phosp 99.8 3.8E-21 8.2E-26 174.9 -2.0 219 63-289 241-486 (1081)
11 KOG0617 Ras suppressor protein 99.8 2.2E-21 4.8E-26 144.7 -4.0 164 83-251 29-193 (264)
12 KOG0617 Ras suppressor protein 99.8 2.8E-21 6.2E-26 144.1 -5.1 182 63-249 33-218 (264)
13 cd00116 LRR_RI Leucine-rich re 99.8 4.7E-20 1E-24 158.3 0.2 226 63-289 51-317 (319)
14 PLN03210 Resistant to P. syrin 99.8 3.5E-17 7.5E-22 161.5 18.5 220 63-288 611-902 (1153)
15 PLN03210 Resistant to P. syrin 99.8 2.6E-17 5.6E-22 162.4 16.9 218 63-288 589-878 (1153)
16 PRK15370 E3 ubiquitin-protein 99.7 1.2E-17 2.6E-22 155.7 13.1 201 64-289 179-398 (754)
17 KOG4237 Extracellular matrix p 99.7 9.3E-20 2E-24 152.0 -1.0 218 67-289 50-332 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 3.2E-18 7E-23 159.5 9.0 203 63-289 199-425 (754)
19 PRK15387 E3 ubiquitin-protein 99.7 3.6E-17 7.9E-22 152.0 14.6 74 207-289 382-455 (788)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-19 5E-24 154.0 -1.2 227 63-289 23-288 (319)
21 KOG0618 Serine/threonine phosp 99.7 2.3E-19 4.9E-24 163.5 -4.7 218 63-289 219-462 (1081)
22 PRK15387 E3 ubiquitin-protein 99.6 1.6E-15 3.5E-20 141.1 11.2 191 63-275 242-465 (788)
23 PLN03150 hypothetical protein; 99.5 3.2E-14 6.9E-19 131.9 10.5 141 30-172 369-528 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 1.5E-15 3.3E-20 132.4 -2.5 180 86-275 74-253 (722)
25 COG4886 Leucine-rich repeat (L 99.4 1.5E-13 3.1E-18 121.6 5.8 180 85-272 114-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.4 3.6E-15 7.8E-20 130.1 -4.6 172 109-289 73-244 (722)
27 COG4886 Leucine-rich repeat (L 99.4 2.9E-13 6.3E-18 119.7 5.5 190 91-289 97-287 (394)
28 KOG1909 Ran GTPase-activating 99.3 1.1E-13 2.4E-18 114.3 -0.9 227 63-289 30-308 (382)
29 PLN03150 hypothetical protein; 99.3 7.1E-12 1.5E-16 116.4 9.0 108 88-195 419-527 (623)
30 KOG3207 Beta-tubulin folding c 99.3 2.3E-13 4.9E-18 115.5 -2.4 184 85-268 119-314 (505)
31 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3.1E-16 95.2 4.0 82 110-196 18-101 (175)
32 KOG3207 Beta-tubulin folding c 99.2 4.9E-12 1.1E-16 107.5 0.5 204 63-269 121-340 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 7.3E-11 1.6E-15 91.2 6.1 127 156-286 16-147 (175)
34 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.4E-16 99.0 0.4 183 79-269 206-413 (490)
35 KOG1259 Nischarin, modulator o 99.1 5.5E-11 1.2E-15 97.0 2.1 180 103-289 206-409 (490)
36 KOG1909 Ran GTPase-activating 99.0 3.7E-11 8E-16 99.6 0.0 209 81-289 24-280 (382)
37 PF13855 LRR_8: Leucine rich r 99.0 2.6E-10 5.6E-15 72.8 2.8 58 231-289 2-59 (61)
38 PF13855 LRR_8: Leucine rich r 99.0 3.4E-10 7.3E-15 72.2 2.7 59 88-146 2-60 (61)
39 KOG0531 Protein phosphatase 1, 98.9 6.8E-11 1.5E-15 105.1 -3.4 175 83-268 91-268 (414)
40 KOG0531 Protein phosphatase 1, 98.8 1.7E-10 3.6E-15 102.6 -2.9 127 87-220 72-199 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 3.8E-09 8.2E-14 100.9 5.1 107 63-170 545-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 7E-09 1.5E-13 99.1 3.1 149 63-214 523-675 (889)
43 KOG2982 Uncharacterized conser 98.7 2.1E-09 4.5E-14 87.7 -1.5 199 86-285 70-285 (418)
44 KOG1859 Leucine-rich repeat pr 98.6 4.4E-10 9.5E-15 101.5 -7.4 180 80-268 102-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.6 6.2E-10 1.3E-14 90.8 -6.1 176 88-265 186-373 (419)
46 KOG2982 Uncharacterized conser 98.6 7.6E-09 1.7E-13 84.5 -1.2 201 63-263 71-287 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.5 1.2E-08 2.6E-13 82.4 -1.4 207 63-269 30-286 (388)
48 KOG2120 SCF ubiquitin ligase, 98.5 5.9E-10 1.3E-14 90.9 -9.5 178 63-240 185-373 (419)
49 KOG1859 Leucine-rich repeat pr 98.5 1.8E-09 3.9E-14 97.6 -7.8 126 112-243 165-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.4 3.7E-09 7.9E-14 76.7 -5.6 106 64-172 28-136 (177)
51 KOG4579 Leucine-rich repeat (L 98.2 3.9E-08 8.4E-13 71.5 -4.2 103 113-219 29-135 (177)
52 KOG1644 U2-associated snRNP A' 98.2 2.9E-06 6.3E-11 65.8 5.4 125 113-241 21-151 (233)
53 COG5238 RNA1 Ran GTPase-activa 98.2 6.1E-07 1.3E-11 72.7 1.5 207 83-289 26-282 (388)
54 KOG1644 U2-associated snRNP A' 98.2 4.2E-06 9E-11 65.0 5.6 104 112-217 43-150 (233)
55 PF12799 LRR_4: Leucine Rich r 98.0 8.9E-06 1.9E-10 47.7 3.6 36 136-172 2-37 (44)
56 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-06 3.2E-11 81.4 0.3 146 111-258 122-278 (699)
57 PF12799 LRR_4: Leucine Rich r 98.0 9.5E-06 2.1E-10 47.6 3.5 37 230-268 1-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.9 3.9E-06 8.5E-11 78.7 1.3 146 135-282 122-278 (699)
59 PRK15386 type III secretion pr 97.9 6.3E-05 1.4E-09 65.7 8.0 137 83-241 48-188 (426)
60 PF13306 LRR_5: Leucine rich r 97.8 9.5E-05 2.1E-09 54.4 7.7 122 154-282 7-129 (129)
61 PRK15386 type III secretion pr 97.7 0.00022 4.7E-09 62.4 8.4 138 107-266 48-188 (426)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00019 4.2E-09 52.7 6.6 106 82-192 7-112 (129)
63 KOG2739 Leucine-rich acidic nu 97.5 6.6E-05 1.4E-09 60.7 2.7 85 86-172 42-129 (260)
64 KOG2739 Leucine-rich acidic nu 97.5 4.4E-05 9.4E-10 61.7 1.6 109 103-213 35-149 (260)
65 KOG2123 Uncharacterized conser 97.1 2.1E-05 4.5E-10 64.2 -3.9 61 85-148 39-101 (388)
66 KOG2123 Uncharacterized conser 97.0 1.9E-05 4E-10 64.5 -5.0 100 158-261 18-123 (388)
67 PF08263 LRRNT_2: Leucine rich 96.6 0.0024 5.2E-08 37.1 2.9 19 41-59 23-43 (43)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0016 3.4E-08 31.8 1.1 21 256-277 1-21 (22)
69 KOG4308 LRR-containing protein 95.9 2.1E-05 4.6E-10 70.7 -12.7 181 89-269 89-304 (478)
70 KOG1947 Leucine rich repeat pr 95.7 0.00091 2E-08 60.6 -3.3 109 86-194 187-306 (482)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 28.9 0.8 9 139-147 4-12 (22)
72 KOG4308 LRR-containing protein 94.8 9.6E-05 2.1E-09 66.5 -12.0 179 65-243 89-303 (478)
73 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.4E-07 25.6 1.4 13 256-268 2-14 (17)
74 KOG4341 F-box protein containi 94.3 0.00076 1.7E-08 58.2 -7.1 226 63-288 138-381 (483)
75 KOG1947 Leucine rich repeat pr 94.1 0.01 2.3E-07 53.7 -0.9 128 158-285 187-327 (482)
76 KOG3864 Uncharacterized conser 93.9 0.0074 1.6E-07 47.3 -1.8 32 255-286 151-183 (221)
77 KOG0473 Leucine-rich repeat pr 93.7 0.0019 4.1E-08 51.7 -5.6 83 63-148 42-124 (326)
78 KOG0473 Leucine-rich repeat pr 93.1 0.0025 5.3E-08 51.1 -5.7 89 81-172 36-124 (326)
79 smart00370 LRR Leucine-rich re 92.5 0.13 2.9E-06 25.9 2.2 21 230-251 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 92.5 0.13 2.9E-06 25.9 2.2 21 230-251 2-22 (26)
81 PF13516 LRR_6: Leucine Rich r 91.3 0.039 8.5E-07 27.3 -0.7 16 255-270 2-17 (24)
82 smart00369 LRR_TYP Leucine-ric 90.7 0.21 4.5E-06 25.1 1.7 15 87-101 2-16 (26)
83 smart00370 LRR Leucine-rich re 90.7 0.21 4.5E-06 25.1 1.7 15 87-101 2-16 (26)
84 KOG4341 F-box protein containi 87.8 0.21 4.5E-06 43.7 0.7 225 63-287 164-434 (483)
85 KOG3864 Uncharacterized conser 86.3 0.075 1.6E-06 41.8 -2.5 35 63-97 101-135 (221)
86 smart00364 LRR_BAC Leucine-ric 80.6 1.1 2.4E-05 22.7 1.2 18 255-273 2-19 (26)
87 KOG3763 mRNA export factor TAP 77.0 1.1 2.3E-05 40.9 0.8 82 180-261 215-307 (585)
88 smart00368 LRR_RI Leucine rich 76.0 2.1 4.6E-05 21.9 1.5 15 255-269 2-16 (28)
89 smart00365 LRR_SD22 Leucine-ri 73.4 3.2 7E-05 21.0 1.7 14 87-100 2-15 (26)
90 KOG3763 mRNA export factor TAP 71.8 2 4.4E-05 39.1 1.3 65 204-270 215-285 (585)
91 KOG4242 Predicted myosin-I-bin 61.6 17 0.00037 32.8 4.9 85 63-147 165-280 (553)
92 smart00367 LRR_CC Leucine-rich 40.9 20 0.00042 17.7 1.3 12 87-98 2-13 (26)
93 TIGR00864 PCC polycystin catio 27.8 27 0.00058 38.7 0.9 32 69-100 1-32 (2740)
94 TIGR00864 PCC polycystin catio 25.5 48 0.001 36.9 2.2 32 117-148 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-34 Score=282.15 Aligned_cols=257 Identities=32% Similarity=0.599 Sum_probs=168.6
Q ss_pred ChHhHHHHHh-----------cCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCC
Q 045366 31 NEADRLSLLA-----------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSL 99 (289)
Q Consensus 31 ~~~~~~~l~~-----------~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 99 (289)
.+.|+.++.+ +.+|+...++|.|.|+.|+.. .+|+.|+++++.+.+..+..+..+++|+.|++++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 3456666665 457988889999999999864 6899999999999998898999999999999999999
Q ss_pred cccCCcccc-cccccccccccccccCCCCC----------------------ccccCCCCCcEEEccCCcCCCCcchhcc
Q 045366 100 RAEIPHEVG-NLFKLQNLTLTNNYFSGKIP----------------------TNLSRCSNLVKFEASNNKLEGEIPAEIS 156 (289)
Q Consensus 100 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 156 (289)
.+.+|..+. .+++|++|++++|.+++.+| ..++.+++|++|++++|.+.+.+|..++
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 877776654 67777777777777665444 3344444555555555554444455555
Q ss_pred CCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEE
Q 045366 157 NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYI 235 (289)
Q Consensus 157 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L 235 (289)
++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..+. +.++++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 555555555555555545555555555555555555555555555555555555566555555554443 5555566666
Q ss_pred EccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 236 FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 236 ~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
++++|++.+.+|..+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|
T Consensus 266 ~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 266 FLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred ECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 6666666555555554 5566666666666666666666666666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.4e-29 Score=245.16 Aligned_cols=226 Identities=32% Similarity=0.550 Sum_probs=159.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 44556666666666666666777777777777777776667777777777777777777777667777777777777777
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+.+|..++.+++|++|++++|.+.+..|..++++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 77777766777777777777777777777766777777777777777777777666666677777777777777777665
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+. +.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 554 66667777777777777666665554 6677777777777777667776777777777777665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.4e-27 Score=203.96 Aligned_cols=257 Identities=19% Similarity=0.177 Sum_probs=184.1
Q ss_pred HhHHHHHhcCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccc
Q 045366 33 ADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK 112 (289)
Q Consensus 33 ~~~~~l~~~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 112 (289)
++..++.++.+.+-+.+.-....-.|-+...+++.|+|++|+|+..-...|..+..|..|.|+.|.++...+..|..+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 34444444444444443333333344455567888888888888777777777777777888888777555556666777
Q ss_pred cccccccccccCC------------------------CCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 113 LQNLTLTNNYFSG------------------------KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 113 L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
|+.|+|..|.|.- .-.+.|-.+.++++|+|+.|+++....+++..+++|+.|+++.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 7777777777651 1223344445566666666666555555666777777777777
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP 247 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 247 (289)
|.+....++.+...++|++|++++|.++...+++|..+..|++|+|++|.++.+... |..+++|++|++++|.+++.|.
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 777777777777778888888888888766677788888888888888888766555 7788899999999999886665
Q ss_pred h--hhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 248 L--DIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 248 ~--~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+ ..|.++++|+.|++.+|++.......|.++++|++|||.+|
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 4 34568899999999999999656678999999999999987
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=7.4e-27 Score=202.54 Aligned_cols=226 Identities=19% Similarity=0.229 Sum_probs=116.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|+|.+|.|+.+-.+.+..++.|+.|||+.|.|+.+....|..-.++++|+|++|+|+...-..|.++.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 56777777777776665555555555666666665555433334444455555555555555444444445555555555
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccc------------------------cccCChhccCCCCCCEEEccCccCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHL------------------------KGQLPASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
++|+++...+..|+.+++|+.|++..|++ .......|..+.++++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 55555544344444455555555554443 333333444444555555555555443
Q ss_pred CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
-.+++.+++.|+.|++++|.|..+... +...++|++|++++|+++ .+++..+..+..|++|.|++|.+.......|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 444455555555555555555544443 555555555555555554 444444434444445555544444333334444
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|||++|
T Consensus 364 lssL~~LdLr~N 375 (873)
T KOG4194|consen 364 LSSLHKLDLRSN 375 (873)
T ss_pred hhhhhhhcCcCC
Confidence 444555544444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-23 Score=184.73 Aligned_cols=220 Identities=25% Similarity=0.387 Sum_probs=141.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccC------------------
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS------------------ 124 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 124 (289)
.+...|.|++|+|..+..+.+.+++.|-.|+|++|.+. .+|+....+..|++|+|++|.+.
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 34455555555555544445555666666666666665 45555566666666666666442
Q ss_pred -------CCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc
Q 045366 125 -------GKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG 197 (289)
Q Consensus 125 -------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 197 (289)
..+|..+.++.+|+.++++.|.+. .+|+.+.++++|+.|++++|.++ .+....+.+.+|++|+++.|+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-
Confidence 113444555556666666666665 55666666666666666666666 33334455566666666666666
Q ss_pred cCCccccCCCCCcEEeccCCcCc--ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc
Q 045366 198 RIPSTRSHVRNLISFNVGLNQFS--GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275 (289)
Q Consensus 198 ~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 275 (289)
.+|.++.++++|+.|.+.+|+++ |++..++++..|+.+..++|++. .+|..+. .++.|+.|.|+.|++- .+|+.+
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc-RC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-RCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh-hhHHHHHhccccccee-echhhh
Confidence 56777777777777777777653 55555777777777777777776 6677766 7777888888877776 677777
Q ss_pred cCCCCCCeEeCcCC
Q 045366 276 SNTTNLHKLDINRN 289 (289)
Q Consensus 276 ~~~~~L~~L~l~~N 289 (289)
.-++-|+.||+..|
T Consensus 359 HlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 359 HLLPDLKVLDLREN 372 (1255)
T ss_pred hhcCCcceeeccCC
Confidence 77777788877765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.1e-23 Score=184.61 Aligned_cols=220 Identities=25% Similarity=0.384 Sum_probs=118.3
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCc-ccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPH-EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.++.|||++|.+.. .|..+..-+++-.|+|++|+|.. +|. .|-++.-|-+|||++|++. .+|+.+..+..|++|.|
T Consensus 104 dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 104 DLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cceeeecchhhhhh-cchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence 34444444444432 23344444444444444444442 222 2334444444444444444 44444444444444444
Q ss_pred cCCcCCCCcchhccCCCCCceeeeeccccc-ccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLK-GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
++|.+.----..+.++++|+.|.+++.+-+ ..+|..+..+.+|..++++.|++. ..|+++..+++|+.|+|++|.++.
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence 444432111111222333333333333222 246666777777777888877777 677777777788888887777776
Q ss_pred cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc-c-----------------------ccCccccC
Q 045366 222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT-G-----------------------SLQDSLSN 277 (289)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~-----------------------~~~~~~~~ 277 (289)
.......+.++++|++++|+++ .+|..+. .++.|+.|.+.+|+++ + .+|+.++.
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred eeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 5544555566777777777766 6666655 5555555555555443 1 45666666
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
|+.|+.|.|++|
T Consensus 338 C~kL~kL~L~~N 349 (1255)
T KOG0444|consen 338 CVKLQKLKLDHN 349 (1255)
T ss_pred hHHHHHhccccc
Confidence 666666666665
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3e-24 Score=179.03 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=160.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.-++.+++.+|.+.. +|+.++.+..++.++.++|++. .+|..+..+..+..++.++|.+. .+|+.++.+..++.++.
T Consensus 68 ~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 346677777777664 5777788888888888888887 57777888888888888888887 77777888888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
.+|.++ ..|+.+.++.++..+++.+|.+.. .|+..-+++.|++++...|.++ .+|..++.+.+|+.|++..|++...
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence 888887 677777788888888888888774 3444444888888888887776 6777788888888888888887754
Q ss_pred CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+ .|.+++.|+++++..|.++ .+|.+...+++++..||+++|+++ +.|..++-+.+|++||+|+|
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence 3 5666666666666666665 666666666666666666666666 66666666666666666665
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-22 Score=167.43 Aligned_cols=226 Identities=15% Similarity=0.229 Sum_probs=180.9
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 141 (289)
...+.|+|+.|.|+.+.+..|+.+.+|++|+|++|+|+.+-|++|.++..+..|-+.+ |+|+....+.|.++.+++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999988887766 889844446677777777777
Q ss_pred ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccC--------------------------
Q 045366 142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL-------------------------- 195 (289)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~-------------------------- 195 (289)
+.-|++.-...+.|..++++..|.+.+|.+...-...|..+..++++++..|.+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 777777766667777777777777777766532222444444444444444330
Q ss_pred -----------------------------------ccc-CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366 196 -----------------------------------SGR-IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIH 238 (289)
Q Consensus 196 -----------------------------------~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~ 238 (289)
.+. ....|..+++|+.+++++|+++++-+. |.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 000 112456789999999999999988776 9999999999999
Q ss_pred CCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 239 KNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 239 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+|++. .+...+|+++..|+.|+|.+|+|+...|..|..+.+|..|++-.|
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 99998 778888889999999999999999999999999999999987655
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.3e-22 Score=169.32 Aligned_cols=216 Identities=27% Similarity=0.426 Sum_probs=192.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.....++.++|++. .+|+.+..+..+..+++++|.+. ..|+.++.+-.++.++..+|+++ ..|+.+..+.++..+++
T Consensus 91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence 35667788888887 47888999999999999999997 67888999999999999999998 88989999999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
.+|++....|..+ .+..|++||...|.+. .+|+.++.+.+|.-|++..|.+. ..| .|+.+..|++++++.|++.-.
T Consensus 168 ~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 168 EGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred cccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh
Confidence 9999984444444 5999999999999888 78999999999999999999998 667 899999999999999999866
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.. ..+++++..||+..|+++ ..|+++. .+++|+.||+|+|.++ ..|..++++ +|+.|-+.+|
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCC
Confidence 665 668999999999999998 8999988 8999999999999999 778889999 8999998887
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.8e-21 Score=174.94 Aligned_cols=219 Identities=25% Similarity=0.391 Sum_probs=181.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.+|++++.+.+ +|+.+..+.+|+.+...+|.+. .+|..+...++|+.|...+|.+. .+|....++..|+.|++
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 678888888888775 4688888899999999999985 67888888889999999999988 78888888999999999
Q ss_pred cCCcCCCCcchhc--------------------------cCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366 143 SNNKLEGEIPAEI--------------------------SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 143 ~~n~~~~~~~~~~--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
..|++. ..|..+ ..++.|+.|++.+|.+++..-+.+.+++.|+.|+|++|.+.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999986 445432 12345888889999998877778899999999999999998
Q ss_pred ccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-cCccc
Q 045366 197 GRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSL 275 (289)
Q Consensus 197 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~ 275 (289)
......+.++..|++|+|++|.++.++..+..+..|++|...+|.+. ..| ++. .++.|+.+|+|.|+++.. +|..
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~- 472 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEA- 472 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhh-
Confidence 55556788999999999999999987755888899999999999997 677 655 899999999999999743 3332
Q ss_pred cCCCCCCeEeCcCC
Q 045366 276 SNTTNLHKLDINRN 289 (289)
Q Consensus 276 ~~~~~L~~L~l~~N 289 (289)
..-++|++||+++|
T Consensus 473 ~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGN 486 (1081)
T ss_pred CCCcccceeeccCC
Confidence 23389999999998
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=2.2e-21 Score=144.68 Aligned_cols=164 Identities=23% Similarity=0.407 Sum_probs=121.8
Q ss_pred ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366 83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (289)
+-.+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..+.++++|+.|+++.|++. ..|..|+++|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 344667778888888887 56666788888888888888887 77888888888888888888876 7788888888888
Q ss_pred eeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCc
Q 045366 163 ILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNR 241 (289)
Q Consensus 163 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 241 (289)
.||+.+|.+.. .+|..|-.+..|+.|++++|.+. .+|...+++++|+.|.+.+|++...+..++.++.|++|++.+|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 88887777763 35655666667777777777776 66777777777777777777777666566777777777777777
Q ss_pred ccccCchhhh
Q 045366 242 YHGSLPLDIG 251 (289)
Q Consensus 242 l~~~~~~~~~ 251 (289)
++ .+|+++.
T Consensus 185 l~-vlppel~ 193 (264)
T KOG0617|consen 185 LT-VLPPELA 193 (264)
T ss_pred ee-ecChhhh
Confidence 76 6676654
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=2.8e-21 Score=144.11 Aligned_cols=182 Identities=21% Similarity=0.401 Sum_probs=156.4
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.+.+++|.++. .|+.++.+.+|+.|++.+|+++ ..|..++.+++|+.|++.-|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 678999999999984 6778999999999999999998 68999999999999999999998 99999999999999999
Q ss_pred cCCcCC-CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 143 SNNKLE-GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
.+|++. ..+|+.|..+..|+.|++++|.+. .+|+.++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|.++-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 999886 578999999999999999999998 78899999999999999999987 789999999999999999999998
Q ss_pred cCCCCCCCC---CCCEEEccCCcccccCchh
Q 045366 222 MFPPINNIS---SLEYIFIHKNRYHGSLPLD 249 (289)
Q Consensus 222 ~~~~~~~~~---~L~~L~l~~n~l~~~~~~~ 249 (289)
.+|.++++. +-+...+.+|.....|.+.
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 777654332 2234455556544344433
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.7e-20 Score=158.34 Aligned_cols=226 Identities=21% Similarity=0.246 Sum_probs=136.0
Q ss_pred CeeEEEeccCCCCCC------cCCccccCCCCCcEEEccCCCCcccCCcccccccc---cccccccccccCC----CCCc
Q 045366 63 QRVIGLDLRHQSIRG------FLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK---LQNLTLTNNYFSG----KIPT 129 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~ 129 (289)
+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.+ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 446777777766552 12345556777777777777776544544544444 7777777777652 1223
Q ss_pred cccCC-CCCcEEEccCCcCCCC----cchhccCCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc--
Q 045366 130 NLSRC-SNLVKFEASNNKLEGE----IPAEISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR-- 198 (289)
Q Consensus 130 ~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~-- 198 (289)
.+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34455 6777777777777632 233455666777777777777632 233445556777777777776532
Q ss_pred --CCccccCCCCCcEEeccCCcCcccCC-C-----CCCCCCCCEEEccCCccccc----CchhhhcCCCCCcEEEccccc
Q 045366 199 --IPSTRSHVRNLISFNVGLNQFSGMFP-P-----INNISSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNN 266 (289)
Q Consensus 199 --~~~~~~~~~~L~~L~l~~n~l~~~~~-~-----~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~ 266 (289)
++..+..+++|++|++++|.+.+... . ....+.|++|++++|.+++. +.... ..+++|+++++++|.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~ 289 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence 23345566777777777777763111 1 11235777777777777521 12222 245677777887777
Q ss_pred cccc----cCccccCC-CCCCeEeCcCC
Q 045366 267 LTGS----LQDSLSNT-TNLHKLDINRN 289 (289)
Q Consensus 267 l~~~----~~~~~~~~-~~L~~L~l~~N 289 (289)
+... ....+... +.|+.+|+.+|
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 290 FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 7744 33344444 67777777665
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3.5e-17 Score=161.46 Aligned_cols=220 Identities=19% Similarity=0.263 Sum_probs=107.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|+++++.+.. ++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 456666666666543 344455566666666665543333442 455555666666555433355555555555555555
Q ss_pred cCCcCCCCcchhccCCCCCce---------------------eeeecccccccCChhc----------------------
Q 045366 143 SNNKLEGEIPAEISNLLKFQI---------------------LNIAKNHLKGQLPASI---------------------- 179 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~---------------------L~l~~n~~~~~~~~~~---------------------- 179 (289)
++|.....+|..+ .+++|++ |++.+|.+. .+|..+
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccc
Confidence 5543222333322 2333333 333333322 112110
Q ss_pred --------cCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCE-----------------
Q 045366 180 --------GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEY----------------- 234 (289)
Q Consensus 180 --------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~----------------- 234 (289)
...++|+.|++++|.....+|..++.+++|+.|++++|...+..|....+++|++
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 1123566666666655555666677777777777766543222222113444444
Q ss_pred ----EEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 235 ----IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 235 ----L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
|++++|.++ .+|.++. .+++|+.|++++|.-...+|..+..+++|+.+++++
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 455555444 4454443 555666666655422224444455555555555443
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=2.6e-17 Score=162.35 Aligned_cols=218 Identities=23% Similarity=0.259 Sum_probs=158.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.+.+.++.+.. +|..+ ...+|+.|++.++.+. .++..+..+++|++|+++++...+.+|. +..+++|++|++
T Consensus 589 ~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 468888888887754 56655 4689999999999997 5777888999999999998765446774 788999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc--------------------cCCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG--------------------RIPST 202 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------------------~~~~~ 202 (289)
++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.... .+|..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc
Confidence 9987767889999999999999999976554566543 55666666665553211 22221
Q ss_pred c------------------------------cCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhh
Q 045366 203 R------------------------------SHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIG 251 (289)
Q Consensus 203 ~------------------------------~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~ 251 (289)
+ ...++|+.|++++|...+..|. +.++++|+.|++++|...+.+|...
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 1 1124677788887765554554 8899999999999986444666543
Q ss_pred cCCC---------------------CCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 252 VNLP---------------------NLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 252 ~~~~---------------------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
.++ +++.|+|++|.++ .+|..+..+++|+.|++++
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred -CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 233 4555566666665 5677788888888888875
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=1.2e-17 Score=155.70 Aligned_cols=201 Identities=22% Similarity=0.395 Sum_probs=99.1
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 143 (289)
+.+.+++++++++. +|..+. ++++.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 34556666655553 343332 35666666666665 3444332 35666666666655 4444332 245556666
Q ss_pred CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccC------------------
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH------------------ 205 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------------------ 205 (289)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++. +|..+..
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCcc
Confidence 66555 4444332 34555555555555 3343332 355555555555542 3322211
Q ss_pred -CCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeE
Q 045366 206 -VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284 (289)
Q Consensus 206 -~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 284 (289)
.++|+.|++++|.+++++..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|
T Consensus 323 l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L 393 (754)
T PRK15370 323 LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPENLP--AALQIM 393 (754)
T ss_pred ccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence 1345555555555554332221 45566666666554 4454332 45666666666655 3443332 245555
Q ss_pred eCcCC
Q 045366 285 DINRN 289 (289)
Q Consensus 285 ~l~~N 289 (289)
++++|
T Consensus 394 dLs~N 398 (754)
T PRK15370 394 QASRN 398 (754)
T ss_pred hhccC
Confidence 55544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=9.3e-20 Score=151.96 Aligned_cols=218 Identities=17% Similarity=0.233 Sum_probs=176.2
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC-C
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN-N 145 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n 145 (289)
.++.++.+++. +|..+. +...+++|..|+|+.+.|.+|..+++|+.|||++|.|+...|++|.+++++..|-+++ |
T Consensus 50 ~VdCr~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 45666666654 344333 4567899999999988888999999999999999999989999999999999988877 8
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc-cccCCCCCcEEeccCCcC-----
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRNLISFNVGLNQF----- 219 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l----- 219 (289)
+|+......|+.+..++.|.+.-|++.-....+|..++++..|.+.+|.+. .++. .+..+..++.+.+..|.+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence 998666688999999999999999999888889999999999999999887 3443 666666666666655541
Q ss_pred --------------------------------------------------------cccCCC--CCCCCCCCEEEccCCc
Q 045366 220 --------------------------------------------------------SGMFPP--INNISSLEYIFIHKNR 241 (289)
Q Consensus 220 --------------------------------------------------------~~~~~~--~~~~~~L~~L~l~~n~ 241 (289)
.+..|. |..+++|+.|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 111222 6677889999999999
Q ss_pred ccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 242 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 242 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
++ .|.+..|.+...+++|.|..|++...-...|.++..|+.|+|.+|
T Consensus 286 i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 286 IT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred cc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 98 666677778889999999999988666678889999999998887
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.2e-18 Score=159.53 Aligned_cols=203 Identities=20% Similarity=0.370 Sum_probs=140.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 568888999888875 454443 57888888888877 3555442 35667777777666 5555443 35666666
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccc--------------------cCChhccCCCCCCEEEccCccCcccCCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG--------------------QLPASIGNLSTLQEINVNGNRLSGRIPST 202 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 202 (289)
++|++. .+|..+. ++|++|++++|++.. .+|..+ .++|+.|++++|.++. +|..
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChh
Confidence 666665 3444332 356666666655542 122211 2578888899888874 6665
Q ss_pred ccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc----cCC
Q 045366 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL----SNT 278 (289)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~----~~~ 278 (289)
+. ++|+.|++++|.+..++..+ .++|++|++++|+++ .+|..+. ..|+.|++++|++. .+|..+ ..+
T Consensus 344 l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 54 69999999999998654434 268999999999998 7887765 47999999999998 556544 456
Q ss_pred CCCCeEeCcCC
Q 045366 279 TNLHKLDINRN 289 (289)
Q Consensus 279 ~~L~~L~l~~N 289 (289)
+++..|++.+|
T Consensus 415 ~~l~~L~L~~N 425 (754)
T PRK15370 415 PQPTRIIVEYN 425 (754)
T ss_pred CCccEEEeeCC
Confidence 88899999887
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3.6e-17 Score=151.98 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=54.2
Q ss_pred CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeC
Q 045366 207 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI 286 (289)
Q Consensus 207 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 286 (289)
++|+.|++++|.+++++.. .++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 3566777777776654332 246777888888776 46532 246788888888888 78888999999999999
Q ss_pred cCC
Q 045366 287 NRN 289 (289)
Q Consensus 287 ~~N 289 (289)
++|
T Consensus 453 s~N 455 (788)
T PRK15387 453 EGN 455 (788)
T ss_pred CCC
Confidence 988
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.3e-19 Score=154.03 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=172.2
Q ss_pred CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCcc------cCCcccccccccccccccccccCCCCCcccc
Q 045366 63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRA------EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS 132 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 132 (289)
..++.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4588999999988542 55567778889999999998762 2344567788999999999999765555555
Q ss_pred CCCC---CcEEEccCCcCCC----CcchhccCC-CCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc--
Q 045366 133 RCSN---LVKFEASNNKLEG----EIPAEISNL-LKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR-- 198 (289)
Q Consensus 133 ~l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~-- 198 (289)
.+.+ |++|++++|.++. .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 9999999999873 223445667 8999999999998843 344567778999999999998742
Q ss_pred --CCccccCCCCCcEEeccCCcCcccC-----CCCCCCCCCCEEEccCCcccccCchhhhcC----CCCCcEEEcccccc
Q 045366 199 --IPSTRSHVRNLISFNVGLNQFSGMF-----PPINNISSLEYIFIHKNRYHGSLPLDIGVN----LPNLRFFIISGNNL 267 (289)
Q Consensus 199 --~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~Ls~n~l 267 (289)
++..+...++|+.|++++|.+.+.. ..+..+++|++|++++|.+++.....+... .+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3344556689999999999986332 126678899999999999875434343323 37999999999999
Q ss_pred cc----ccCccccCCCCCCeEeCcCC
Q 045366 268 TG----SLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 268 ~~----~~~~~~~~~~~L~~L~l~~N 289 (289)
++ .+.+.+..+++|+++++++|
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCC
Confidence 73 34456677899999999987
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-19 Score=163.50 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=169.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
+.++.|+.++|.++...+... -.+|+.+++++|+++ .+|+.+..+.+|+.++..+|.+. .+|..+....+|+.|..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 566677777777664322221 256888888888887 46677788888888888888886 78888888888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhcc-------------------------CCCCCCEEEccCccCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG-------------------------NLSTLQEINVNGNRLSG 197 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~~~~L~~L~l~~n~~~~ 197 (289)
.+|.++ .+|.....+..|++|++..|.+....+..+. .++.|+.|++.+|.+++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 888887 5666677788899999998887632111111 12346777888888877
Q ss_pred cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc
Q 045366 198 RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS 276 (289)
Q Consensus 198 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 276 (289)
..-..+-++.+|+.|+|++|.+..++.. +.+++.|++|+++||+++ .+|..+. .++.|++|..-+|++. ..| .+.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-hhh
Confidence 6666777888999999999999877766 888899999999999998 8888877 8899999999999988 777 699
Q ss_pred CCCCCCeEeCcCC
Q 045366 277 NTTNLHKLDINRN 289 (289)
Q Consensus 277 ~~~~L~~L~l~~N 289 (289)
.++.|+.+|+|.|
T Consensus 450 ~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCN 462 (1081)
T ss_pred hcCcceEEecccc
Confidence 9999999999987
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.6e-15 Score=141.10 Aligned_cols=191 Identities=25% Similarity=0.288 Sum_probs=126.8
Q ss_pred CeeEEEeccCCCCCCcCC--ccccC--------------CCCCcEEEccCCCCcccCCcccccccccccccccccccCCC
Q 045366 63 QRVIGLDLRHQSIRGFLS--PFVGY--------------LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK 126 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~--~~~~~--------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 126 (289)
++++.|++++|.++...+ +.+.. ...|+.|++++|+++. +|. ..++|++|++++|.+++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 677888888877665422 11111 1235555666666652 333 23567777777777763
Q ss_pred CCccccC-----------------CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366 127 IPTNLSR-----------------CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189 (289)
Q Consensus 127 ~~~~~~~-----------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 189 (289)
+|..... ..+|++|++++|++. .+|.. .++|+.|++++|.+.. +|.. ..+|+.|+
T Consensus 317 Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~Ld 388 (788)
T PRK15387 317 LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELI 388 (788)
T ss_pred CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEE
Confidence 3321110 125666666666665 33432 2356666666666663 4432 35789999
Q ss_pred ccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
+++|.+++ +|.. .++|+.|++++|.+++++.. ..+|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++
T Consensus 389 Ls~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~-~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 389 VSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLSE 459 (788)
T ss_pred ecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHh-hccCCCeEECCCCCCCc
Confidence 99999884 5543 36899999999999976432 347889999999998 8998877 89999999999999998
Q ss_pred ccCccc
Q 045366 270 SLQDSL 275 (289)
Q Consensus 270 ~~~~~~ 275 (289)
..+..+
T Consensus 460 ~~~~~L 465 (788)
T PRK15387 460 RTLQAL 465 (788)
T ss_pred hHHHHH
Confidence 877766
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=131.95 Aligned_cols=141 Identities=31% Similarity=0.543 Sum_probs=111.1
Q ss_pred cChHhHHHHHh---------cCCCCCCCCCC-----CcccceeCCCC----CeeEEEeccCCCCCCcCCccccCCCCCcE
Q 045366 30 ANEADRLSLLA---------MNSWNNSINLC-----QWTGVTCGHRH----QRVIGLDLRHQSIRGFLSPFVGYLSFLRS 91 (289)
Q Consensus 30 ~~~~~~~~l~~---------~~~w~~~~~~c-----~~~~~~c~~~~----~~v~~l~l~~~~~~~~~~~~~~~l~~L~~ 91 (289)
..+.|..|+.+ ..+|.. +.| .|.|+.|.... ..++.|+|+++.+.+.+|+.+..+++|+.
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLRFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred cCchHHHHHHHHHHhcCCcccCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 34556666654 126864 345 69999995321 25888999999999888988999999999
Q ss_pred EEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCC-CCCceeeeeccc
Q 045366 92 INLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNL-LKFQILNIAKNH 170 (289)
Q Consensus 92 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~ 170 (289)
|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+... .++..+++.+|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999988888888889999999999999988888888888899999999988888888877653 456677777765
Q ss_pred cc
Q 045366 171 LK 172 (289)
Q Consensus 171 ~~ 172 (289)
..
T Consensus 527 ~l 528 (623)
T PLN03150 527 GL 528 (623)
T ss_pred cc
Confidence 43
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=1.5e-15 Score=132.39 Aligned_cols=180 Identities=25% Similarity=0.406 Sum_probs=114.9
Q ss_pred CCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366 86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN 165 (289)
Q Consensus 86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (289)
++.-...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+++++.|+++ ..|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455666666665 46666666666677777766666 66666666666777777777666 5566665554 56666
Q ss_pred eecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCccccc
Q 045366 166 IAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS 245 (289)
Q Consensus 166 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 245 (289)
+++|+++ .+|..++....|.+++.+.|.+. .+|..++++.+|+.+.+..|++...++.+.. -.|..||+++|++. .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCcee-e
Confidence 6666666 55666666666667777776665 5666666666777777766666655555442 25666777777766 6
Q ss_pred CchhhhcCCCCCcEEEccccccccccCccc
Q 045366 246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275 (289)
Q Consensus 246 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 275 (289)
+|-.+. ++.+|++|.|.+|.+. ..|..+
T Consensus 226 iPv~fr-~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFR-KMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhh-hhhhheeeeeccCCCC-CChHHH
Confidence 666655 6677777777777666 444333
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.5e-13 Score=121.63 Aligned_cols=180 Identities=32% Similarity=0.514 Sum_probs=107.1
Q ss_pred CCCCCcEEEccCCCCcccCCccccccc-ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCce
Q 045366 85 YLSFLRSINLVNNSLRAEIPHEVGNLF-KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQI 163 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 163 (289)
.++.++.|++.+|++. .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .++...+..+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3455666666666666 3444444443 6667777666666 55555666666666777666665 44555446666666
Q ss_pred eeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCccc
Q 045366 164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 243 (289)
|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+...+..+..++.+++|++++|.++
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 666666666 44444444445666666666433 3445556666666666666666554334555666667777766665
Q ss_pred ccCchhhhcCCCCCcEEEccccccccccC
Q 045366 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQ 272 (289)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 272 (289)
.++. +. ...+++.|++++|.+....+
T Consensus 269 -~i~~-~~-~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 -SISS-LG-SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -cccc-cc-ccCccCEEeccCccccccch
Confidence 3433 33 56666677776666664444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=3.6e-15 Score=130.11 Aligned_cols=172 Identities=23% Similarity=0.365 Sum_probs=154.7
Q ss_pred cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188 (289)
Q Consensus 109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 188 (289)
.+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++.+..|.++|++.|+++ ..|..+..++ |+.+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3555668899999998 99998888889999999999986 88999999999999999999999 6777776665 8999
Q ss_pred EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
-+++|+++ .+|..++..++|..+|.+.|.+...++.+.++.+|+.|.+.+|.+. .+|++.. .-.|..||+|+|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee
Confidence 99999998 7888899999999999999999988777899999999999999998 7888876 455899999999999
Q ss_pred cccCccccCCCCCCeEeCcCC
Q 045366 269 GSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+|-.|.++..|++|-|++|
T Consensus 225 -~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -ecchhhhhhhhheeeeeccC
Confidence 99999999999999999988
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=2.9e-13 Score=119.71 Aligned_cols=190 Identities=31% Similarity=0.516 Sum_probs=111.1
Q ss_pred EEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCC-CCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366 91 SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS-NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN 169 (289)
Q Consensus 91 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 169 (289)
.+.+..+.+.. ....+..++.++.|++.+|.+. .++....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555531 2223344466666777666666 5555555553 6667777776665 44455666667777777776
Q ss_pred cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchh
Q 045366 170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLD 249 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 249 (289)
++. .+|......+.|+.+++++|.+. .+|........|+++.+++|.+...+..+.+..++..+.+.+|++. .++..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 666 34444446666666777776666 4454444445566666666654444444555566666666666665 22333
Q ss_pred hhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 250 IGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 250 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+. .++.++.|++++|+++ .++. ++...+++.|++++|
T Consensus 251 ~~-~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 251 IG-NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hc-cccccceecccccccc-cccc-ccccCccCEEeccCc
Confidence 33 5566677777777666 3333 666666666666654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-13 Score=114.29 Aligned_cols=227 Identities=22% Similarity=0.309 Sum_probs=155.0
Q ss_pred CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCC---cccCCcc-------cccccccccccccccccCCCCC
Q 045366 63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSL---RAEIPHE-------VGNLFKLQNLTLTNNYFSGKIP 128 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~ 128 (289)
..++.|++++|.+... +.+.+.+.+.|+..++++... ...+|.+ +-+.++|++||||+|-+.-..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 5688999999988642 445666777888888876532 2234433 3456789999999988764433
Q ss_pred cc----ccCCCCCcEEEccCCcCCCCc-------------chhccCCCCCceeeeeccccccc----CChhccCCCCCCE
Q 045366 129 TN----LSRCSNLVKFEASNNKLEGEI-------------PAEISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQE 187 (289)
Q Consensus 129 ~~----~~~l~~L~~L~l~~n~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~ 187 (289)
.. +.++..|++|++.+|.+...- ...+++-+.|+.+..+.|++... +...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 33 356788899999888876221 12234567888888888887643 2344667788888
Q ss_pred EEccCccCcc----cCCccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchh----hhcCC
Q 045366 188 INVNGNRLSG----RIPSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLD----IGVNL 254 (289)
Q Consensus 188 L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~ 254 (289)
+.+..|.+.. .+..++..+++|+.|||.+|.++.. -.++..+++|++|++++|.++..-... +-...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 8888887742 1234577888999999988887521 112566678889999888887443333 23456
Q ss_pred CCCcEEEccccccccc----cCccccCCCCCCeEeCcCC
Q 045366 255 PNLRFFIISGNNLTGS----LQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 255 ~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~N 289 (289)
|.|+.|.+.+|.++-. +...+...+.|+.|+|++|
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 8888999998888732 2334566788888888876
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=7.1e-12 Score=116.43 Aligned_cols=108 Identities=31% Similarity=0.557 Sum_probs=86.3
Q ss_pred CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366 88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (289)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccccccCChhccCC-CCCCEEEccCccC
Q 045366 168 KNHLKGQLPASIGNL-STLQEINVNGNRL 195 (289)
Q Consensus 168 ~n~~~~~~~~~~~~~-~~L~~L~l~~n~~ 195 (289)
+|.+.+.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 888888888776653 4566777777753
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.3e-13 Score=115.51 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCCCCcEEEccCCCCcccCC-cccccccccccccccccccCC--CCCccccCCCCCcEEEccCCcCCCCcch-hccCCCC
Q 045366 85 YLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSG--KIPTNLSRCSNLVKFEASNNKLEGEIPA-EISNLLK 160 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~ 160 (289)
++.+|+.+.|++..+..... .....+++++.|||++|-+.. .+......+|+|+.|+++.|++...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34566666666666642211 234456667777777665542 1223334566677777777666422111 1124566
Q ss_pred Cceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEc
Q 045366 161 FQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFI 237 (289)
Q Consensus 161 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l 237 (289)
|+.|.+++|+++.. +......+|+|+.|++.+|..-.........+..|++|||++|.+..... ....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66777777666532 22233456666777776664222223334455566677776666654432 2556666666666
Q ss_pred cCCccccc-Cchh----hhcCCCCCcEEEccccccc
Q 045366 238 HKNRYHGS-LPLD----IGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 238 ~~n~l~~~-~~~~----~~~~~~~L~~L~Ls~n~l~ 268 (289)
+.+.+... .|+. .-..+++|++|+++.|++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 66665421 1111 0124566777777776664
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.4e-11 Score=95.15 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=15.0
Q ss_pred ccccccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhc-cCCCCCCE
Q 045366 110 LFKLQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQE 187 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~ 187 (289)
..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.+.. ++ .+..++.|+.|++++|.++.. .+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 344555555555554 221 232 34455555555555542 21 234444555555555555422 2122 23444444
Q ss_pred EEccCccCc
Q 045366 188 INVNGNRLS 196 (289)
Q Consensus 188 L~l~~n~~~ 196 (289)
|++++|.+.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 444444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.9e-12 Score=107.52 Aligned_cols=204 Identities=20% Similarity=0.253 Sum_probs=141.3
Q ss_pred CeeEEEeccCCCCCCcC-CccccCCCCCcEEEccCCCCccc--CCcccccccccccccccccccCCCCCcc-ccCCCCCc
Q 045366 63 QRVIGLDLRHQSIRGFL-SPFVGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLV 138 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 138 (289)
..++.+.|+...+...- ......|++++.|+|++|-+..- +..-...+++|+.|+++.|++....... -..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 45677777766654321 13566789999999999877632 2233457899999999999886322221 23567899
Q ss_pred EEEccCCcCCC-CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC--ccccCCCCCcEEecc
Q 045366 139 KFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP--STRSHVRNLISFNVG 215 (289)
Q Consensus 139 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~ 215 (289)
.|.++.|.++- .+......+|+|+.|++.+|............+..|++|++++|++.. .+ ...+.++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcc
Confidence 99999998872 333445678999999999985332333334567789999999998763 33 456788899999999
Q ss_pred CCcCcccCCC-------CCCCCCCCEEEccCCcccccCc--hhhhcCCCCCcEEEcccccccc
Q 045366 216 LNQFSGMFPP-------INNISSLEYIFIHKNRYHGSLP--LDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 216 ~n~l~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
.+.+..+-.+ ....++|++|++..|++. ..+ ..+. .+++|+.|....|.++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~-~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLR-TLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhh-ccchhhhhhcccccccc
Confidence 9888654222 256688999999999985 222 2333 56778888888887764
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=7.3e-11 Score=91.20 Aligned_cols=127 Identities=20% Similarity=0.354 Sum_probs=52.1
Q ss_pred cCCCCCceeeeecccccccCChhcc-CCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCC-CCCCCCC
Q 045366 156 SNLLKFQILNIAKNHLKGQLPASIG-NLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLE 233 (289)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~ 233 (289)
.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++. +. .+..+++|++|++++|.++.....+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 355578999999999984 3 2444 57899999999999984 43 5788999999999999998764433 3578999
Q ss_pred EEEccCCcccccCchhhhcCCCCCcEEEcccccccccc---CccccCCCCCCeEeC
Q 045366 234 YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL---QDSLSNTTNLHKLDI 286 (289)
Q Consensus 234 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~~~~L~~L~l 286 (289)
+|++++|++.+.-.-.....+++|+.|++.+|.++... ...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999999973322233347899999999999998432 245788999999984
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.5e-11 Score=98.95 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=108.9
Q ss_pred CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC---CCC--------------------ccccCCC
Q 045366 79 LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG---KIP--------------------TNLSRCS 135 (289)
Q Consensus 79 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~--------------------~~~~~l~ 135 (289)
+|-.+.-+++|+.+.++++.-..+.. --..-+.|+++.+.+..++. .+| .....+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 34444556777777777765442211 11123566666666554431 111 1122334
Q ss_pred CCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEecc
Q 045366 136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVG 215 (289)
Q Consensus 136 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 215 (289)
.|+++|+++|.++ .+.++..-.|.++.|++++|++... ..+..+++|++||+++|.++ ...++-.++-+.++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 5777777777776 5666666777777777777777622 22566777777777777766 444555566677777777
Q ss_pred CCcCcccCCCCCCCCCCCEEEccCCcccccCc--hhhhcCCCCCcEEEcccccccc
Q 045366 216 LNQFSGMFPPINNISSLEYIFIHKNRYHGSLP--LDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 216 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
.|.+... ..+.++-+|..||+++|++. .+. ..++ ++|-|+.+.|.+|.+.+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG-~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIG-NLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchh-hHHHhcccc-cccHHHHHhhcCCCccc
Confidence 7766532 23455566777777777775 222 2344 66777777777777663
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=5.5e-11 Score=96.97 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=122.3
Q ss_pred CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCC---Ccchh--------------------ccCCC
Q 045366 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG---EIPAE--------------------ISNLL 159 (289)
Q Consensus 103 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~--------------------~~~l~ 159 (289)
+|-.+.-+.+|+.+.++.+.-. .+.+....-|.|+++...+..++. .+|.. +....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 3444455778888888877543 222222334677777776654431 11211 12234
Q ss_pred CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccC
Q 045366 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHK 239 (289)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 239 (289)
.|+++|+++|.++ .+.+...-.|.++.|++++|.+.. + ..++.+++|+.||+++|.++.+...-.++-++++|.+++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 6888999999888 566667778889999999998873 3 347888899999999998876554434556788899999
Q ss_pred CcccccCchhhhcCCCCCcEEEcccccccccc-CccccCCCCCCeEeCcCC
Q 045366 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL-QDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 240 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~N 289 (289)
|.+. .+ ..+. .+-+|..||+++|++.... -..++++|-|+++.|.+|
T Consensus 362 N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 362 NKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 9886 22 2333 5678889999999987322 246888888888887776
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=3.7e-11 Score=99.59 Aligned_cols=209 Identities=17% Similarity=0.222 Sum_probs=151.5
Q ss_pred ccccCCCCCcEEEccCCCCccc----CCcccccccccccccccccc---cCCCCC-------ccccCCCCCcEEEccCCc
Q 045366 81 PFVGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNY---FSGKIP-------TNLSRCSNLVKFEASNNK 146 (289)
Q Consensus 81 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~l~~n~ 146 (289)
+.+..+..++.+++++|.+... +...+.+.+.|+..++++=- ....+| .++.++++|++++|+.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455678899999999998632 44556777889999887632 112233 345677899999999999
Q ss_pred CCCCcch----hccCCCCCceeeeeccccccc-------------CChhccCCCCCCEEEccCccCcccC----CccccC
Q 045366 147 LEGEIPA----EISNLLKFQILNIAKNHLKGQ-------------LPASIGNLSTLQEINVNGNRLSGRI----PSTRSH 205 (289)
Q Consensus 147 ~~~~~~~----~~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~ 205 (289)
+....++ .++++..|++|++.+|++... .-.....-++|+.+..+.|++.... ...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 8754443 346789999999999988622 1123455678999999999986432 345667
Q ss_pred CCCCcEEeccCCcCc--ccCC---CCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEEccccccccccCccc--
Q 045366 206 VRNLISFNVGLNQFS--GMFP---PINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIISGNNLTGSLQDSL-- 275 (289)
Q Consensus 206 ~~~L~~L~l~~n~l~--~~~~---~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~-- 275 (289)
.+.|+.+.+..|.+. |... .+..+++|+.|++.+|-++-.-.. ...+.+++|+.|++++|.+.......|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 789999999999885 3311 178999999999999988622222 223467899999999999985443322
Q ss_pred ---cCCCCCCeEeCcCC
Q 045366 276 ---SNTTNLHKLDINRN 289 (289)
Q Consensus 276 ---~~~~~L~~L~l~~N 289 (289)
...|+|+.|++.+|
T Consensus 264 al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGN 280 (382)
T ss_pred HHhccCCCCceeccCcc
Confidence 45889999999887
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=2.6e-10 Score=72.75 Aligned_cols=58 Identities=40% Similarity=0.519 Sum_probs=32.8
Q ss_pred CCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+|++|++++|+++ .+|+..|.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555 455544445556666666666555444555566666666665554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.4e-10 Score=72.21 Aligned_cols=59 Identities=36% Similarity=0.457 Sum_probs=32.3
Q ss_pred CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366 88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 146 (289)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444455555555555555554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=6.8e-11 Score=105.11 Aligned_cols=175 Identities=21% Similarity=0.314 Sum_probs=77.5
Q ss_pred ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366 83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (289)
+..++.++.+++.+|++... ...+..+++|++|++++|.|+... .+..++.|+.|++.+|.+.. ...+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhh
Confidence 34445555555555555422 111344555555555555554211 13333445555555555441 12233345555
Q ss_pred eeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCC--CCCEEEccC
Q 045366 163 ILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS--SLEYIFIHK 239 (289)
Q Consensus 163 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~ 239 (289)
.+++++|++...-+ . ...+.+++.+++++|.+.. ...+.....+..+++..|.++.+-.. .... +|+.+++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l-~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL-NELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc-ccchhHHHHHHhccc
Confidence 55555555542222 1 2344455555555554431 11222222333334444444432211 1111 256666666
Q ss_pred CcccccCchhhhcCCCCCcEEEccccccc
Q 045366 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 240 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
|.+. .++..+- .+..+..|++.+|++.
T Consensus 242 n~i~-~~~~~~~-~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 242 NRIS-RSPEGLE-NLKNLPVLDLSSNRIS 268 (414)
T ss_pred Cccc-ccccccc-ccccccccchhhcccc
Confidence 6665 3322222 5566667777766665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=1.7e-10 Score=102.64 Aligned_cols=127 Identities=25% Similarity=0.306 Sum_probs=55.6
Q ss_pred CCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeee
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNI 166 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (289)
..++.+.++.|.+.. +-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 444444444444432 1222444455555555555554 22222444455555555555554221 2334444555555
Q ss_pred ecccccccCChhccCCCCCCEEEccCccCcccCC-ccccCCCCCcEEeccCCcCc
Q 045366 167 AKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP-STRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 167 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~ 220 (289)
.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++++|.+.
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55555421 123334455555555555442211 1 234445555555555444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=3.8e-09 Score=100.93 Aligned_cols=107 Identities=22% Similarity=0.394 Sum_probs=74.1
Q ss_pred CeeEEEeccCCC--CCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEE
Q 045366 63 QRVIGLDLRHQS--IRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF 140 (289)
Q Consensus 63 ~~v~~l~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 140 (289)
++++++-+..+. +.....++|..++.|+.|||++|.--+.+|..++++-+|++|+++++.+. .+|..+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 456666666664 44444455777777777777776555567777777777777777777777 777777777777777
Q ss_pred EccCCcCCCCcchhccCCCCCceeeeeccc
Q 045366 141 EASNNKLEGEIPAEISNLLKFQILNIAKNH 170 (289)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 170 (289)
++..+.....++.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 777766554556666667777777776543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=7e-09 Score=99.13 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=107.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC--CcccCCcccccccccccccccccccCCCCCccccCCCCCcEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS--LRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF 140 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 140 (289)
..++++.+-++.+... +.. ..++.|+.|-+..|. +....+..|..++.|++||+++|.--+.+|..++.+.+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3456666666655422 221 233478899999886 543444457789999999999887666899999999999999
Q ss_pred EccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccC--cccCCccccCCCCCcEEec
Q 045366 141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL--SGRIPSTRSHVRNLISFNV 214 (289)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~L~~L~l 214 (289)
+++++.+. .+|..+.++..|.+|++..+.....+|.....+.+|+.|.+..... +...-..+..+.+|+.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999998 8899999999999999998876655666667799999998876542 2222233444555555544
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.1e-09 Score=87.70 Aligned_cols=199 Identities=18% Similarity=0.151 Sum_probs=102.6
Q ss_pred CCCCcEEEccCCCCcc--cCCcccccccccccccccccccCCCCCccc-cCCCCCcEEEccCCcCC-CCcchhccCCCCC
Q 045366 86 LSFLRSINLVNNSLRA--EIPHEVGNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLE-GEIPAEISNLLKF 161 (289)
Q Consensus 86 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L 161 (289)
++++++++|.+|.+++ .+..-+.++|.|++|+++.|.+.. .-+.+ ....+|+.|-+.+..+. ......+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4556666666666652 122223456666666666666552 11122 23345666666555443 1122333455556
Q ss_pred ceeeeeccccccc--CChhccCC-CCCCEEEccCccCcc--cCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCE
Q 045366 162 QILNIAKNHLKGQ--LPASIGNL-STLQEINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEY 234 (289)
Q Consensus 162 ~~L~l~~n~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~ 234 (289)
+.|+++.|.+... ........ +.+++++..+|.... ..-..-..+|++..+.+..|.+...... ....+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666655533211 00111111 133334333332110 0001112346777777777766533322 556667778
Q ss_pred EEccCCcccccCchhhhcCCCCCcEEEccccccccccCc------cccCCCCCCeEe
Q 045366 235 IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD------SLSNTTNLHKLD 285 (289)
Q Consensus 235 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------~~~~~~~L~~L~ 285 (289)
|+++.+++.+.-.-+-..+++++..|.++++.+.+.+.. .++.+++++.|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 888888875332222234889999999999988754321 357788887775
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=4.4e-10 Score=101.49 Aligned_cols=180 Identities=21% Similarity=0.227 Sum_probs=94.9
Q ss_pred CccccCCCCCcEEEccCCCCcccCCcccccc-cccccccccccccC----------CCCCccccCCCCCcEEEccCCcCC
Q 045366 80 SPFVGYLSFLRSINLVNNSLRAEIPHEVGNL-FKLQNLTLTNNYFS----------GKIPTNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 80 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~~~ 148 (289)
|-.+..+..|+.|.+.++.+... ..+..+ ..|++|.-.+ .+. |.+..++ .+-.|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 44566677888888888877521 111111 1233322111 110 1111111 1224556666666665
Q ss_pred CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCC
Q 045366 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN 228 (289)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 228 (289)
.+..++.-++.++.|++++|+++... .+..++.|++||+++|.+. .+|..-..-.+|..|.+.+|.++.. ..+.+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~ 252 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL-RGIEN 252 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh-hhHHh
Confidence 55566666677777777777776432 5666777777777777766 3332211112466667777766532 22455
Q ss_pred CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
+.+|..||+++|-+.+.-.-...-.+..|+.|.|.+|.+.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666667777766653211111113455666666666654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.2e-10 Score=90.75 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=77.9
Q ss_pred CCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc-CCC-CcchhccCCCCCcee
Q 045366 88 FLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LEG-EIPAEISNLLKFQIL 164 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L 164 (289)
.|+.|||+...++.. .-..+..+.+|+.|.+.++++...+...+.+-.+|+.++++.+. ++. ...-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555555422 22224445555555555555555555555555555556555542 221 111223455555555
Q ss_pred eeecccccccCC-hhcc-CCCCCCEEEccCccC--cc-cCCccccCCCCCcEEeccCCcC-cc-cCCCCCCCCCCCEEEc
Q 045366 165 NIAKNHLKGQLP-ASIG-NLSTLQEINVNGNRL--SG-RIPSTRSHVRNLISFNVGLNQF-SG-MFPPINNISSLEYIFI 237 (289)
Q Consensus 165 ~l~~n~~~~~~~-~~~~-~~~~L~~L~l~~n~~--~~-~~~~~~~~~~~L~~L~l~~n~l-~~-~~~~~~~~~~L~~L~l 237 (289)
+++.+.+....- ..+. --++|+.|+++|+.- .. .+.--...+++|..|||++|.. +. ....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 555554432111 1111 123445555555431 10 0111123455666666655432 21 1112455555666666
Q ss_pred cCCcccccCchhh--hcCCCCCcEEEcccc
Q 045366 238 HKNRYHGSLPLDI--GVNLPNLRFFIISGN 265 (289)
Q Consensus 238 ~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n 265 (289)
++|.. .+|..+ +...|+|.+||+-++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 65543 223221 124455666655544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=7.6e-09 Score=84.49 Aligned_cols=201 Identities=18% Similarity=0.140 Sum_probs=128.0
Q ss_pred CeeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC-CCCccccCCCCCcE
Q 045366 63 QRVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG-KIPTNLSRCSNLVK 139 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 139 (289)
.+|..+||.+|.|+.. +...+.++++|+.|+++.|++...+...-....+|++|-|.++.+.- ..-..+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 6899999999998853 45567889999999999999974433222457799999999887652 23334556888899
Q ss_pred EEccCCcCCC--Ccchhcc-CCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc-CCccccCCCCCcEEe
Q 045366 140 FEASNNKLEG--EIPAEIS-NLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR-IPSTRSHVRNLISFN 213 (289)
Q Consensus 140 L~l~~n~~~~--~~~~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 213 (289)
|+++.|.+.. .....+. .-+.++++....|.... ..-..-+.++++..+-+..|.+... ....+..+|.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 9998884421 1111111 12345555555554321 1111223466777777777766422 234455666777788
Q ss_pred ccCCcCcccCCC--CCCCCCCCEEEccCCcccccCchh-----hhcCCCCCcEEEcc
Q 045366 214 VGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLD-----IGVNLPNLRFFIIS 263 (289)
Q Consensus 214 l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~-----~~~~~~~L~~L~Ls 263 (289)
|+.+++..+... +.+++.+..|.++++.+.+.+.-. +...+++++.|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888888766543 777888888888888776444321 11256666666543
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=1.2e-08 Score=82.35 Aligned_cols=207 Identities=17% Similarity=0.183 Sum_probs=140.6
Q ss_pred CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCc---ccCC-------cccccccccccccccccccCCCCC
Q 045366 63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLR---AEIP-------HEVGNLFKLQNLTLTNNYFSGKIP 128 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~ 128 (289)
..++.+||++|.|... +...+.+-.+|+..+++.-... +.++ .++-+++.|+..+|++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5678999999998753 4445666678888887764332 1222 345678999999999999886666
Q ss_pred cc----ccCCCCCcEEEccCCcCCCCcch-------------hccCCCCCceeeeecccccccCC----hhccCCCCCCE
Q 045366 129 TN----LSRCSNLVKFEASNNKLEGEIPA-------------EISNLLKFQILNIAKNHLKGQLP----ASIGNLSTLQE 187 (289)
Q Consensus 129 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~ 187 (289)
.. +.+-+.|..|.+.+|.+...... ..++-|.|+......|++..... ..+..-..|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 54 45667899999999987522221 22456889999999998873221 12333358889
Q ss_pred EEccCccCcccC-----CccccCCCCCcEEeccCCcCcccCC-----CCCCCCCCCEEEccCCcccccCchhhhc-----
Q 045366 188 INVNGNRLSGRI-----PSTRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHKNRYHGSLPLDIGV----- 252 (289)
Q Consensus 188 L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~----- 252 (289)
+.+..|.+.... -..+..+.+|+.||+++|.++..-. .+..++.|++|.+..|-++..-...++.
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 999988875221 1234567899999999998862211 1556667899999998887554444332
Q ss_pred CCCCCcEEEcccccccc
Q 045366 253 NLPNLRFFIISGNNLTG 269 (289)
Q Consensus 253 ~~~~L~~L~Ls~n~l~~ 269 (289)
..|+|..|...+|...+
T Consensus 270 ~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 270 FVPNLMPLPGDYNERRG 286 (388)
T ss_pred cCCCccccccchhhhcC
Confidence 35888888888887654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.9e-10 Score=90.87 Aligned_cols=178 Identities=19% Similarity=0.141 Sum_probs=129.3
Q ss_pred CeeEEEeccCCCCCCc-CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccc-cCC-CCCccccCCCCCcE
Q 045366 63 QRVIGLDLRHQSIRGF-LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSG-KIPTNLSRCSNLVK 139 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~ 139 (289)
.+++.+||+...|+.. +-..+..+.+|+.|.+.++.+.+.+...+.+-.+|+.|+++.+. ++. ...-.+.++..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5688899998877642 44567788999999999999998888888899999999999875 431 12233578899999
Q ss_pred EEccCCcCCCCcchhc-c-CCCCCceeeeeccccc---ccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEe
Q 045366 140 FEASNNKLEGEIPAEI-S-NLLKFQILNIAKNHLK---GQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFN 213 (289)
Q Consensus 140 L~l~~n~~~~~~~~~~-~-~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~ 213 (289)
|+++++.+.......+ . --++|+.|++++..-. ..+.--...+++|.+||+++|. ++......+.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999998864332221 2 2357888999886533 1122224688999999999976 4433334677889999999
Q ss_pred ccCCcCcc--cCCCCCCCCCCCEEEccCC
Q 045366 214 VGLNQFSG--MFPPINNISSLEYIFIHKN 240 (289)
Q Consensus 214 l~~n~l~~--~~~~~~~~~~L~~L~l~~n 240 (289)
++.|.... ..-.+...++|.+|++.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99887531 1112778899999998765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=1.8e-09 Score=97.64 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=93.3
Q ss_pred ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366 112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN 191 (289)
Q Consensus 112 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 191 (289)
+|...+.++|.+. .+...+.-++.++.|+|++|++... ..+..+++|++||++.|.+. .+|..-..-..|+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 5777788888887 6777777788888889999888733 27778888999999888887 444322222238888888
Q ss_pred CccCcccCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEEEccCCccc
Q 045366 192 GNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYH 243 (289)
Q Consensus 192 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~ 243 (289)
+|.++. + ..+.++.+|+.||+++|-+.+.... +..+..|+.|.+.||.+.
T Consensus 241 nN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888763 2 3567888888899998888755432 556678888888888875
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=3.7e-09 Score=76.69 Aligned_cols=106 Identities=23% Similarity=0.287 Sum_probs=74.3
Q ss_pred eeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCCcccCCcccc-cccccccccccccccCCCCCccccCCCCCcEE
Q 045366 64 RVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSLRAEIPHEVG-NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF 140 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 140 (289)
....+||+.+.+... .+..+....+|+..+|++|.+. .+|..|. .++.++.|++++|.++ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344556666654321 1223444566777788888886 4666655 3568888888888887 788888888888888
Q ss_pred EccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366 141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
+++.|.+. ..|+.+..+.++-+|+..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 88888887 66777777888888888777766
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=3.9e-08 Score=71.46 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=45.5
Q ss_pred cccccccccccCCCCCcc---ccCCCCCcEEEccCCcCCCCcchhcc-CCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366 113 LQNLTLTNNYFSGKIPTN---LSRCSNLVKFEASNNKLEGEIPAEIS-NLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188 (289)
Q Consensus 113 L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 188 (289)
+..++|+.+.+. .+++. +.+...|...++++|.+. .+|+.|. ..+..+.|++.+|.++ .+|.++..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555443 22222 222334444455555554 3333332 2334455555555554 344445555555555
Q ss_pred EccCccCcccCCccccCCCCCcEEeccCCcC
Q 045366 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQF 219 (289)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 219 (289)
+++.|.+. ..|..+..+.++..|+..+|.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 55555444 3344444444444444444433
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.9e-06 Score=65.83 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=72.2
Q ss_pred cccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366 113 LQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN 191 (289)
Q Consensus 113 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 191 (289)
-+.+++.+.++.. +-. ++ -+.+...+|+++|.+. .-..|..++.|.+|.++.|+++...|.--.-+++|+.|.+.
T Consensus 21 e~e~~LR~lkip~-ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-IEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccc-hhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4566666665541 111 21 1335666777777664 22345566777777777777775555444455667777777
Q ss_pred CccCcccC-CccccCCCCCcEEeccCCcCcccCCC----CCCCCCCCEEEccCCc
Q 045366 192 GNRLSGRI-PSTRSHVRNLISFNVGLNQFSGMFPP----INNISSLEYIFIHKNR 241 (289)
Q Consensus 192 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n~ 241 (289)
+|++.... -.-++.+|+|++|.+-+|.++..... +..+++|+.||+.+=.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77664211 12355666777777777766543332 5566677777765543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=6.1e-07 Score=72.71 Aligned_cols=207 Identities=19% Similarity=0.204 Sum_probs=138.0
Q ss_pred ccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccC---CCC-------CccccCCCCCcEEEccCCcCC
Q 045366 83 VGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFS---GKI-------PTNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~~~ 148 (289)
+..+..++.++|++|.|... +...+.+-.+|+..+++.--.. ..+ -+++-++|+|+..+++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467889999999999643 3344556678888888763221 112 234678999999999999997
Q ss_pred CCcchh----ccCCCCCceeeeeccccccc----CC---------hhccCCCCCCEEEccCccCcccCC----ccccCCC
Q 045366 149 GEIPAE----ISNLLKFQILNIAKNHLKGQ----LP---------ASIGNLSTLQEINVNGNRLSGRIP----STRSHVR 207 (289)
Q Consensus 149 ~~~~~~----~~~l~~L~~L~l~~n~~~~~----~~---------~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~ 207 (289)
...|+. +++-+.|.+|.+++|++... +. +...+-|.|+.+.+..|++..-.. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 666543 56778899999999987622 11 123456789999999998752211 1233336
Q ss_pred CCcEEeccCCcCccc--CC----CCCCCCCCCEEEccCCcccccCchh---hhcCCCCCcEEEccccccccccCccc---
Q 045366 208 NLISFNVGLNQFSGM--FP----PINNISSLEYIFIHKNRYHGSLPLD---IGVNLPNLRFFIISGNNLTGSLQDSL--- 275 (289)
Q Consensus 208 ~L~~L~l~~n~l~~~--~~----~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--- 275 (289)
.|+.+.+..|.|..- .. .+..+.+|+.|++..|-++-.-... ..+.++.|+.|.+.+|.++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 899999999988621 11 1456789999999999876221111 22356778999999998875433222
Q ss_pred ---cCCCCCCeEeCcCC
Q 045366 276 ---SNTTNLHKLDINRN 289 (289)
Q Consensus 276 ---~~~~~L~~L~l~~N 289 (289)
...|+|..|...+|
T Consensus 266 f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 266 FNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhhcCCCccccccchh
Confidence 23556666666554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=4.2e-06 Score=64.99 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=50.3
Q ss_pred ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccC-ChhccCCCCCCEEEc
Q 045366 112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL-PASIGNLSTLQEINV 190 (289)
Q Consensus 112 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l 190 (289)
....+||++|.+. .+ +.|..+++|.+|.+.+|+|+...|.--..+++|+.|.+.+|.+.... -.-+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445555555543 22 22445555555555555555444433344455555555555554211 112345556666666
Q ss_pred cCccCcccC---CccccCCCCCcEEeccCC
Q 045366 191 NGNRLSGRI---PSTRSHVRNLISFNVGLN 217 (289)
Q Consensus 191 ~~n~~~~~~---~~~~~~~~~L~~L~l~~n 217 (289)
-+|..+... ...+..+|+|+.||.++-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 655554211 123445566666665544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=8.9e-06 Score=47.66 Aligned_cols=36 Identities=36% Similarity=0.686 Sum_probs=15.9
Q ss_pred CCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366 136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 136 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
+|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33334444444444444444444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=1.5e-06 Score=81.44 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=68.3
Q ss_pred cccccccccccccC-CCCCcccc-CCCCCcEEEccCCcCC-CCcchhccCCCCCceeeeecccccccCChhccCCCCCCE
Q 045366 111 FKLQNLTLTNNYFS-GKIPTNLS-RCSNLVKFEASNNKLE-GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187 (289)
Q Consensus 111 ~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 187 (289)
.+|++||+++...- ..-|..++ .+|+|+.|.+.+-.+. ........++|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666654321 11111222 3566666666655443 12233345566666666666666532 44556666666
Q ss_pred EEccCccCcc-cCCccccCCCCCcEEeccCCcCcccC-------CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCc
Q 045366 188 INVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMF-------PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLR 258 (289)
Q Consensus 188 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 258 (289)
|.+.+-.+.. ..-..+..+++|+.||+|........ .--..+|.|+.||.+++.+...+-+.+...-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 6655544331 11123445566666666554332111 00123455555555555554433333332333333
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=9.5e-06 Score=47.55 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=25.3
Q ss_pred CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++|++|++++|+++ .+|+.+. ++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence 35777777777777 5665555 7777777777777777
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3.9e-06 Score=78.66 Aligned_cols=146 Identities=21% Similarity=0.355 Sum_probs=102.2
Q ss_pred CCCcEEEccCCcCCC-Ccchh-ccCCCCCceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCcE
Q 045366 135 SNLVKFEASNNKLEG-EIPAE-ISNLLKFQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLIS 211 (289)
Q Consensus 135 ~~L~~L~l~~n~~~~-~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 211 (289)
.+|++|++++..... .-+.. -..+|+|+.|.+.+-.+... ......++++|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 579999998865431 11222 34689999999998776532 345567899999999999998843 67889999999
Q ss_pred EeccCCcCcccCC--CCCCCCCCCEEEccCCccccc--Cchh---hhcCCCCCcEEEccccccccccCcc-ccCCCCCC
Q 045366 212 FNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGS--LPLD---IGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLH 282 (289)
Q Consensus 212 L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~ 282 (289)
|.+.+=.+..... .+-++++|+.||+|..+.... +... ....+|.|+.||.|++.+.+.+-+. +..-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 9988777764322 266789999999998876422 1221 1235799999999999887654332 23344443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=6.3e-05 Score=65.66 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC-cCCCCcchhccCCCCC
Q 045366 83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGEIPAEISNLLKF 161 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L 161 (289)
+..+++++.|++++|.+. .+|. + ..+|+.|.++++.--..+|..+. .+|++|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 344578999999999887 4562 2 24699999987543236676553 58999999988 443 3443 57
Q ss_pred ceeeeecccccccCChhccCC-CCCCEEEccCcc-Cc-ccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEcc
Q 045366 162 QILNIAKNHLKGQLPASIGNL-STLQEINVNGNR-LS-GRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIH 238 (289)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 238 (289)
+.|++..+.... +..+ ++|+.|.+.+++ .. ...|..+ .++|++|++++|.....+..+. .+|+.|.++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 778777655431 2222 256677775433 11 1122222 2589999999888664333233 589999988
Q ss_pred CCc
Q 045366 239 KNR 241 (289)
Q Consensus 239 ~n~ 241 (289)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=9.5e-05 Score=54.38 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=51.9
Q ss_pred hccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL 232 (289)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L 232 (289)
.|..+.+|+.+.+.. .+.......|..+++++.+.+.++ +......+|..+++++.+.+.+ .+...... +..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666666553 343334445666666666666553 4433445566666677777654 33333333 5666777
Q ss_pred CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366 233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282 (289)
Q Consensus 233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 282 (289)
+.+.+..+ +. .++...+.+. .++.+.+.. .+.......|.++++|+
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777554 33 4555555455 777777665 33434455677776664
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00022 Score=62.39 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=88.5
Q ss_pred cccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCC
Q 045366 107 VGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186 (289)
Q Consensus 107 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 186 (289)
+..+.+++.|++++|.+. .+|. + ..+|++|.++++.--..+|..+ .++|++|++.+|.-...+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 345688999999999887 6672 2 2469999998754333566544 25899999998833223443 577
Q ss_pred EEEccCccCcc--cCCccccCCCCCcEEeccCCc-CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc
Q 045366 187 EINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQ-FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263 (289)
Q Consensus 187 ~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls 263 (289)
.|++.++.... .+| ++|+.|.+.++. .......-.-.++|++|++++|... .+|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP---~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP---ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc---ccCcEEEec
Confidence 78887665431 233 366777774432 2111001112268999999998865 4554443 689999998
Q ss_pred ccc
Q 045366 264 GNN 266 (289)
Q Consensus 264 ~n~ 266 (289)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00019 Score=52.72 Aligned_cols=106 Identities=23% Similarity=0.267 Sum_probs=38.6
Q ss_pred cccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCC
Q 045366 82 FVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF 161 (289)
Q Consensus 82 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (289)
.|..+++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..+.+++.+.+.. .+.......|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455555555543 343334444555555555555443 3322333444554555555543 2221223344445555
Q ss_pred ceeeeecccccccCChhccCCCCCCEEEccC
Q 045366 162 QILNIAKNHLKGQLPASIGNLSTLQEINVNG 192 (289)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 192 (289)
+.+++..+ +.......|.+. .++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555433 222223334444 555554443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=6.6e-05 Score=60.71 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=38.0
Q ss_pred CCCCcEEEccCCCCcccCCccccccccccccccccc--ccCCCCCccccCCCCCcEEEccCCcCCC-CcchhccCCCCCc
Q 045366 86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQ 162 (289)
Q Consensus 86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~ 162 (289)
+..|+.+++.+..++. -..|-.+++|++|+++.| ++.+.++.-...+|+|+++++++|++.. ..-.....+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444444431 112334555555566555 3333333333344555566665555541 0011223444455
Q ss_pred eeeeeccccc
Q 045366 163 ILNIAKNHLK 172 (289)
Q Consensus 163 ~L~l~~n~~~ 172 (289)
.|++..|...
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.50 E-value=4.4e-05 Score=61.72 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=63.0
Q ss_pred CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC--cCCCCcchhccCCCCCceeeeecccccccC-Chhc
Q 045366 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN--KLEGEIPAEISNLLKFQILNIAKNHLKGQL-PASI 179 (289)
Q Consensus 103 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~ 179 (289)
+......+..|+.|.+.+..++ .+. .+..+++|++|.++.| .+.+.++.....+|+|+++++++|++.... -..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4444455666777776666555 222 3556778888888888 555555555556688888888888776310 1123
Q ss_pred cCCCCCCEEEccCccCcccC---CccccCCCCCcEEe
Q 045366 180 GNLSTLQEINVNGNRLSGRI---PSTRSHVRNLISFN 213 (289)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~ 213 (289)
..+.+|..|++..|..++.- -..|.-+++|+++|
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 45556667777666554311 12233455666655
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.1e-05 Score=64.20 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC--ccccCCCCCcEEEccCCcCC
Q 045366 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP--TNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~ 148 (289)
+|+.|+.|.|+-|+|+... .|..+++|++|+|..|.|. .+. .-+.++++|+.|.|..|.-.
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcc
Confidence 3444455555555444211 2344455555555555444 111 12334455555555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=1.9e-05 Score=64.49 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEE
Q 045366 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYI 235 (289)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L 235 (289)
+.+.+.|++.++++.+. .....++.|+.|.|+-|.++.. ..+..+++|++|.|..|.|..+... +.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455666666666532 2334566666666666666522 2345566666666666666544332 5566666666
Q ss_pred EccCCcccccCchhh----hcCCCCCcEEE
Q 045366 236 FIHKNRYHGSLPLDI----GVNLPNLRFFI 261 (289)
Q Consensus 236 ~l~~n~l~~~~~~~~----~~~~~~L~~L~ 261 (289)
.|..|.-.+.-+... ..-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666665544433321 22345555553
No 67
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.60 E-value=0.0024 Score=37.09 Aligned_cols=19 Identities=53% Similarity=1.310 Sum_probs=13.4
Q ss_pred cCCCCCC--CCCCCcccceeC
Q 045366 41 MNSWNNS--INLCQWTGVTCG 59 (289)
Q Consensus 41 ~~~w~~~--~~~c~~~~~~c~ 59 (289)
+.+|+.. .++|.|.||+|+
T Consensus 23 l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 23 LSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CTT--TT--S-CCCSTTEEE-
T ss_pred cccCCCcCCCCCeeeccEEeC
Confidence 6789987 699999999995
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.42 E-value=0.0016 Score=31.79 Aligned_cols=21 Identities=57% Similarity=0.836 Sum_probs=13.0
Q ss_pred CCcEEEccccccccccCccccC
Q 045366 256 NLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 256 ~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777766 55555543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.89 E-value=2.1e-05 Score=70.70 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=105.9
Q ss_pred CcEEEccCCCCcccC----CcccccccccccccccccccCCCC----CccccCC-CCCcEEEccCCcCCC----Ccchhc
Q 045366 89 LRSINLVNNSLRAEI----PHEVGNLFKLQNLTLTNNYFSGKI----PTNLSRC-SNLVKFEASNNKLEG----EIPAEI 155 (289)
Q Consensus 89 L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~----~~~~~~ 155 (289)
+..+.|.+|.+.... ..++...+.|+.|++++|.+...- ...+... ..+++|++..+.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777776432 233455677888888888776221 1223332 456667777776653 233445
Q ss_pred cCCCCCceeeeecccccc----cCChhcc----CCCCCCEEEccCccCcccC----CccccCCCC-CcEEeccCCcCccc
Q 045366 156 SNLLKFQILNIAKNHLKG----QLPASIG----NLSTLQEINVNGNRLSGRI----PSTRSHVRN-LISFNVGLNQFSGM 222 (289)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~n~l~~~ 222 (289)
.....++.+++..|.+.. .++..+. ...++++|++.+|.++... ...+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556777788887777641 1223333 4667778888887765321 123344444 66677777777532
Q ss_pred -----CCCCCCC-CCCCEEEccCCcccccCchhh---hcCCCCCcEEEcccccccc
Q 045366 223 -----FPPINNI-SSLEYIFIHKNRYHGSLPLDI---GVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 223 -----~~~~~~~-~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~Ls~n~l~~ 269 (289)
.+.+..+ ..++.++++.|.+++.-.... ...++.++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1113333 566788888887764433222 1255677888888887764
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.00091 Score=60.61 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCCcEEEccCCCCccc--CCccccccccccccccccc-ccCCCCC----ccccCCCCCcEEEccCCc-CCCCcchhcc-
Q 045366 86 LSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNN-YFSGKIP----TNLSRCSNLVKFEASNNK-LEGEIPAEIS- 156 (289)
Q Consensus 86 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~- 156 (289)
++.|+.+.+..+.-... .-.....++.|+.|+++++ ......+ .....+.+|+.++++++. ++...-..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666655532211 1122334566666666652 1110111 122334566666666655 3322222222
Q ss_pred CCCCCceeeeeccc-cccc-CChhccCCCCCCEEEccCcc
Q 045366 157 NLLKFQILNIAKNH-LKGQ-LPASIGNLSTLQEINVNGNR 194 (289)
Q Consensus 157 ~l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~ 194 (289)
.+++|++|.+.++. +++. +......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25666666655544 2322 11222345566666666554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.01 Score=28.89 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.3
Q ss_pred EEEccCCcC
Q 045366 139 KFEASNNKL 147 (289)
Q Consensus 139 ~L~l~~n~~ 147 (289)
+|++++|.+
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.84 E-value=9.6e-05 Score=66.54 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=96.6
Q ss_pred eEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCccc----CCcccccc-cccccccccccccCCC----CCccc
Q 045366 65 VIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRAE----IPHEVGNL-FKLQNLTLTNNYFSGK----IPTNL 131 (289)
Q Consensus 65 v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~ 131 (289)
+..++|.+|.+... +-..+.....|+.|++++|.+.+. +...+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55667777776644 223445567777788888877632 11223333 5667777777766632 23344
Q ss_pred cCCCCCcEEEccCCcCCC----Ccchhcc----CCCCCceeeeeccccccc----CChhccCCCC-CCEEEccCccCccc
Q 045366 132 SRCSNLVKFEASNNKLEG----EIPAEIS----NLLKFQILNIAKNHLKGQ----LPASIGNLST-LQEINVNGNRLSGR 198 (289)
Q Consensus 132 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~~ 198 (289)
.....++.++++.|.+.. .++..+. ...++++|.+.++.++.. ....+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456667777777776631 1222222 355677777777766522 1122333344 55566666665432
Q ss_pred ----CCccccCC-CCCcEEeccCCcCcccCC-----CCCCCCCCCEEEccCCccc
Q 045366 199 ----IPSTRSHV-RNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 199 ----~~~~~~~~-~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~ 243 (289)
....+... ..++.++++.|.+...-. .+..++.++++.+.+|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12233333 455666666666652211 1444556666666666554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.59 E-value=0.025 Score=25.56 Aligned_cols=13 Identities=54% Similarity=0.629 Sum_probs=5.9
Q ss_pred CCcEEEccccccc
Q 045366 256 NLRFFIISGNNLT 268 (289)
Q Consensus 256 ~L~~L~Ls~n~l~ 268 (289)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.31 E-value=0.00076 Score=58.23 Aligned_cols=226 Identities=14% Similarity=0.052 Sum_probs=111.4
Q ss_pred CeeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCC-cccCCccc-cccccccccccccc-ccCCCCCc-cccCCCC
Q 045366 63 QRVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSL-RAEIPHEV-GNLFKLQNLTLTNN-YFSGKIPT-NLSRCSN 136 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~ 136 (289)
..++.+++.++.-.+. +-.....+++++.|.+.++.. ++..-..+ ..++++++|++..+ .++...-. ...++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4556666665543221 222334566677776666642 22211122 23566777777663 23311111 2234667
Q ss_pred CcEEEccCCcC-CC-CcchhccCCCCCceeeeeccccccc--CChhccCCCCCCEEEccCcc-CcccCCc-cccCCCCCc
Q 045366 137 LVKFEASNNKL-EG-EIPAEISNLLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGNR-LSGRIPS-TRSHVRNLI 210 (289)
Q Consensus 137 L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~~~~~~~L~ 210 (289)
|++++++++.- ++ .+...+..+..++.+.+.++.-.+. +...-+...-+.++++..+. +++..-. .-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777766532 22 1111223334444444443221100 00011122334444444432 2321110 112345777
Q ss_pred EEeccCCcCcccCC--C-CCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc-c-ccCccccCCCCCCeE
Q 045366 211 SFNVGLNQFSGMFP--P-INNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT-G-SLQDSLSNTTNLHKL 284 (289)
Q Consensus 211 ~L~l~~n~l~~~~~--~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~-~~~~~~~~~~~L~~L 284 (289)
.++.+++.-.+... . ..+.++|+.|-+++++ +++.-...+..+.+.|+.+++..+... + .+-..-.+|+.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 77776654422111 1 4567889999998886 443333445567889999999888553 2 233334678888888
Q ss_pred eCcC
Q 045366 285 DINR 288 (289)
Q Consensus 285 ~l~~ 288 (289)
.+++
T Consensus 378 slsh 381 (483)
T KOG4341|consen 378 SLSH 381 (483)
T ss_pred Chhh
Confidence 8774
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.10 E-value=0.01 Score=53.71 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCCceeeeeccccccc--CChhccCCCCCCEEEccCc-cCcccC----CccccCCCCCcEEeccCCc-CcccCCC--CC
Q 045366 158 LLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGN-RLSGRI----PSTRSHVRNLISFNVGLNQ-FSGMFPP--IN 227 (289)
Q Consensus 158 l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n-~~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~ 227 (289)
++.|+.+.+.++.-... ........+.|+.|+++++ ...... ......+++|+.++++++. ++...-. ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666655533222 2233455666777776652 111011 1223344666777776665 3321111 22
Q ss_pred CCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc-cc-cCccccCCCCCCeEe
Q 045366 228 NISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT-GS-LQDSLSNTTNLHKLD 285 (289)
Q Consensus 228 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~-~~~~~~~~~~L~~L~ 285 (289)
.+++|++|.+.++. +++.--..+...++.|++|+++++... +. +.....++++++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 35677777766565 443333344556677777777766432 11 222234455555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.0074 Score=47.28 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=14.9
Q ss_pred CCCcEEEcccc-ccccccCccccCCCCCCeEeC
Q 045366 255 PNLRFFIISGN-NLTGSLQDSLSNTTNLHKLDI 286 (289)
Q Consensus 255 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l 286 (289)
++|+.|++++| +|++..-..+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 44555555544 444444444444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0019 Score=51.73 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=61.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.||++.|.+.. +...++-++.+..|+++.|++. -.|..+.....+..+++..|..+ ..|..+...+.++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 678888888777543 3344555677777888887776 46777777777888888887777 78888888888888888
Q ss_pred cCCcCC
Q 045366 143 SNNKLE 148 (289)
Q Consensus 143 ~~n~~~ 148 (289)
..|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 887765
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.10 E-value=0.0025 Score=51.09 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred ccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 045366 81 PFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLK 160 (289)
Q Consensus 81 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 160 (289)
..+..+...+.||++.|.+. .....|+-++.+..|+++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34556678889999999886 45566888899999999999998 88988888888888999999887 78999999999
Q ss_pred Cceeeeeccccc
Q 045366 161 FQILNIAKNHLK 172 (289)
Q Consensus 161 L~~L~l~~n~~~ 172 (289)
+++++.-++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999988764
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.53 E-value=0.13 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=10.9
Q ss_pred CCCCEEEccCCcccccCchhhh
Q 045366 230 SSLEYIFIHKNRYHGSLPLDIG 251 (289)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~ 251 (289)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 4454443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.53 E-value=0.13 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=10.9
Q ss_pred CCCCEEEccCCcccccCchhhh
Q 045366 230 SSLEYIFIHKNRYHGSLPLDIG 251 (289)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~ 251 (289)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 4454443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.28 E-value=0.039 Score=27.30 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=7.1
Q ss_pred CCCcEEEccccccccc
Q 045366 255 PNLRFFIISGNNLTGS 270 (289)
Q Consensus 255 ~~L~~L~Ls~n~l~~~ 270 (289)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.66 E-value=0.21 Score=25.13 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=9.2
Q ss_pred CCCcEEEccCCCCcc
Q 045366 87 SFLRSINLVNNSLRA 101 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~ 101 (289)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666653
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.66 E-value=0.21 Score=25.13 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=9.2
Q ss_pred CCCcEEEccCCCCcc
Q 045366 87 SFLRSINLVNNSLRA 101 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~ 101 (289)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666653
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.83 E-value=0.21 Score=43.74 Aligned_cols=225 Identities=18% Similarity=0.137 Sum_probs=122.5
Q ss_pred CeeEEEeccCCC-CCCc-CCccccCCCCCcEEEccCC-CCcccCCc-ccccccccccccccccc-cCCCCC-ccccCCCC
Q 045366 63 QRVIGLDLRHQS-IRGF-LSPFVGYLSFLRSINLVNN-SLRAEIPH-EVGNLFKLQNLTLTNNY-FSGKIP-TNLSRCSN 136 (289)
Q Consensus 63 ~~v~~l~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 136 (289)
++++.+.+.++. ++.. .-..-..+++++.+++..| .++...-. --.++++|++++++.+. +++.-. .-.+++..
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 678888777665 2222 1122245788888988884 44443322 23468899999998865 443111 11223333
Q ss_pred CcEEEccCCc---------------------------CCCCcc-hhccCCCCCceeeeeccccccc-CChhc-cCCCCCC
Q 045366 137 LVKFEASNNK---------------------------LEGEIP-AEISNLLKFQILNIAKNHLKGQ-LPASI-GNLSTLQ 186 (289)
Q Consensus 137 L~~L~l~~n~---------------------------~~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~~-~~~~~L~ 186 (289)
++.+.+.++. ++...- ..-..+..|+.++.+++...+. .-.++ .+.++|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 4444333321 111000 0112344566666655433211 11122 3557888
Q ss_pred EEEccCcc-CcccCCccc-cCCCCCcEEeccCCcCc--c-cCCCCCCCCCCCEEEccCCccc-cc--C-chhhhcCCCCC
Q 045366 187 EINVNGNR-LSGRIPSTR-SHVRNLISFNVGLNQFS--G-MFPPINNISSLEYIFIHKNRYH-GS--L-PLDIGVNLPNL 257 (289)
Q Consensus 187 ~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~n~l~--~-~~~~~~~~~~L~~L~l~~n~l~-~~--~-~~~~~~~~~~L 257 (289)
.+-++++. +++.--..+ .+++.|+.+++..+... + +...-.+++.|+.+.++++... +. . ......+...+
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 88888776 332111122 25678888888777653 2 1222567788999988877543 11 0 01112356778
Q ss_pred cEEEcccccc-ccccCccccCCCCCCeEeCc
Q 045366 258 RFFIISGNNL-TGSLQDSLSNTTNLHKLDIN 287 (289)
Q Consensus 258 ~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~ 287 (289)
+.+.|+++.. ++...+.+..+++|+.+++-
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 8888888854 44555677888888887763
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.34 E-value=0.075 Score=41.81 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=16.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCC
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNN 97 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 97 (289)
..|+.+|-++..|...=-+.+..++.++.|.+.++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 34555555555544333334444444555555444
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.61 E-value=1.1 Score=22.68 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=12.7
Q ss_pred CCCcEEEccccccccccCc
Q 045366 255 PNLRFFIISGNNLTGSLQD 273 (289)
Q Consensus 255 ~~L~~L~Ls~n~l~~~~~~ 273 (289)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46777888888877 5554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.05 E-value=1.1 Score=40.86 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=44.7
Q ss_pred cCCCCCCEEEccCccCccc--CCccccCCCCCcEEeccCC--cCcccCCC-CCCCCCCCEEEccCCcccccCc--hh---
Q 045366 180 GNLSTLQEINVNGNRLSGR--IPSTRSHVRNLISFNVGLN--QFSGMFPP-INNISSLEYIFIHKNRYHGSLP--LD--- 249 (289)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n--~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~--- 249 (289)
.+.+.+..+.+++|++... +..--...|+|+.|+|++| .+...... -.+...|++|.+.||.+..... .+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3556677777888876421 1122234578888888887 33221111 1122367788888887753322 12
Q ss_pred -hhcCCCCCcEEE
Q 045366 250 -IGVNLPNLRFFI 261 (289)
Q Consensus 250 -~~~~~~~L~~L~ 261 (289)
+-..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 223567776664
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.96 E-value=2.1 Score=21.92 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=12.1
Q ss_pred CCCcEEEcccccccc
Q 045366 255 PNLRFFIISGNNLTG 269 (289)
Q Consensus 255 ~~L~~L~Ls~n~l~~ 269 (289)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 568889999888864
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.41 E-value=3.2 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=8.0
Q ss_pred CCCcEEEccCCCCc
Q 045366 87 SFLRSINLVNNSLR 100 (289)
Q Consensus 87 ~~L~~L~L~~n~l~ 100 (289)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45556666666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.82 E-value=2 Score=39.13 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=41.4
Q ss_pred cCCCCCcEEeccCCcCcccCCC---CCCCCCCCEEEccCC--cccccCchhhh-cCCCCCcEEEccccccccc
Q 045366 204 SHVRNLISFNVGLNQFSGMFPP---INNISSLEYIFIHKN--RYHGSLPLDIG-VNLPNLRFFIISGNNLTGS 270 (289)
Q Consensus 204 ~~~~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~n--~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~ 270 (289)
.+.+.+..++|++|.+..+... -...++|..|+|++| .+.. ..++. -+..-|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 3556777888888887644332 445578888888888 4431 11211 1445678888888888743
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.60 E-value=17 Score=32.83 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=45.4
Q ss_pred CeeEEEeccCCCCCCcCCccccC-------------------C------CCCcEEEccCCCCcccCCccccc---ccccc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGY-------------------L------SFLRSINLVNNSLRAEIPHEVGN---LFKLQ 114 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~-------------------l------~~L~~L~L~~n~l~~~~~~~~~~---l~~L~ 114 (289)
.++++++++.|.+....|..+.+ + ..+++++++.|.....+|..+.. -..++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 67788999988876654433221 1 23556666666666555544322 23455
Q ss_pred cccccccccCC---CCCccccCCCCCcEEEccCCcC
Q 045366 115 NLTLTNNYFSG---KIPTNLSRCSNLVKFEASNNKL 147 (289)
Q Consensus 115 ~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~ 147 (289)
.++.+...++- .-+...+.-+.++..+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 55655554431 1122233445666666666654
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.88 E-value=20 Score=17.71 Aligned_cols=12 Identities=25% Similarity=0.399 Sum_probs=6.7
Q ss_pred CCCcEEEccCCC
Q 045366 87 SFLRSINLVNNS 98 (289)
Q Consensus 87 ~~L~~L~L~~n~ 98 (289)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666553
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.77 E-value=27 Score=38.67 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.5
Q ss_pred eccCCCCCCcCCccccCCCCCcEEEccCCCCc
Q 045366 69 DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100 (289)
Q Consensus 69 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 100 (289)
||++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998887788888999999999998875
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.48 E-value=48 Score=36.94 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=26.2
Q ss_pred cccccccCCCCCccccCCCCCcEEEccCCcCC
Q 045366 117 TLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 117 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 148 (289)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 67889998666667888889999999998875
Done!