Query 045366
Match_columns 289
No_of_seqs 236 out of 3713
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 7.2E-41 2.5E-45 285.5 20.8 246 41-289 24-278 (313)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-35 7.2E-40 279.9 19.3 257 29-289 8-328 (768)
3 4fcg_A Uncharacterized protein 100.0 1.8E-35 6.3E-40 253.6 16.9 239 45-289 55-311 (328)
4 4eco_A Uncharacterized protein 100.0 1.9E-35 6.4E-40 274.6 11.8 241 43-289 59-412 (636)
5 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-34 8.3E-39 245.2 12.5 224 63-289 76-301 (313)
6 3rgz_A Protein brassinosteroid 100.0 2.7E-33 9.1E-38 265.5 19.8 226 63-289 418-714 (768)
7 4ecn_A Leucine-rich repeat pro 100.0 5E-34 1.7E-38 270.9 13.6 253 31-289 267-654 (876)
8 2z66_A Variable lymphocyte rec 100.0 3.2E-32 1.1E-36 231.2 17.1 239 49-289 5-258 (306)
9 3zyj_A Leucine-rich repeat-con 100.0 4E-31 1.4E-35 235.5 21.8 224 63-289 64-289 (440)
10 3zyi_A Leucine-rich repeat-con 100.0 1.8E-31 6.2E-36 238.5 17.7 224 63-289 75-300 (452)
11 3v47_A TOLL-like receptor 5B a 100.0 8.7E-31 3E-35 234.1 20.3 135 63-197 30-168 (455)
12 2z80_A TOLL-like receptor 2, v 100.0 8.9E-32 3E-36 233.1 11.2 225 63-289 52-311 (353)
13 1ozn_A Reticulon 4 receptor; N 100.0 7.6E-30 2.6E-34 214.5 21.6 220 66-289 14-235 (285)
14 1xku_A Decorin; proteoglycan, 100.0 1.1E-29 3.7E-34 217.9 21.4 232 50-289 30-273 (330)
15 3v47_A TOLL-like receptor 5B a 100.0 3.4E-30 1.2E-34 230.2 18.5 114 175-289 291-405 (455)
16 2id5_A Lingo-1, leucine rich r 100.0 4.9E-30 1.7E-34 230.7 19.3 226 63-289 32-282 (477)
17 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-29 5.9E-34 216.9 19.1 231 50-289 32-274 (332)
18 2o6q_A Variable lymphocyte rec 100.0 5.2E-29 1.8E-33 207.8 20.7 217 48-269 2-219 (270)
19 3o6n_A APL1; leucine-rich repe 100.0 6.2E-30 2.1E-34 224.4 14.9 109 64-172 70-178 (390)
20 1ozn_A Reticulon 4 receptor; N 100.0 1E-28 3.5E-33 207.6 21.6 206 63-269 32-239 (285)
21 2id5_A Lingo-1, leucine rich r 100.0 4.2E-29 1.4E-33 224.6 19.8 226 63-289 56-306 (477)
22 4fcg_A Uncharacterized protein 100.0 2.6E-29 8.7E-34 215.4 17.2 199 86-289 80-287 (328)
23 3t6q_A CD180 antigen; protein- 100.0 4.6E-29 1.6E-33 230.6 19.0 158 63-220 33-192 (606)
24 3oja_B Anopheles plasmodium-re 100.0 1.7E-29 6E-34 233.1 16.1 109 64-172 76-184 (597)
25 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5.2E-33 215.5 20.4 224 63-289 45-328 (390)
26 3oja_B Anopheles plasmodium-re 100.0 2.8E-28 9.6E-33 225.0 20.0 246 41-289 9-334 (597)
27 3t6q_A CD180 antigen; protein- 100.0 4.5E-28 1.5E-32 224.0 21.0 226 63-289 278-510 (606)
28 3zyi_A Leucine-rich repeat-con 100.0 7.7E-28 2.6E-32 215.0 21.8 220 65-289 56-276 (452)
29 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-29 7.7E-34 230.1 11.6 160 63-222 26-211 (549)
30 4eco_A Uncharacterized protein 100.0 1.7E-29 5.7E-34 234.7 10.5 207 79-289 198-443 (636)
31 3j0a_A TOLL-like receptor 5; m 100.0 6.1E-28 2.1E-32 231.0 20.3 144 51-196 14-161 (844)
32 1wwl_A Monocyte differentiatio 100.0 8.4E-30 2.9E-34 217.0 6.6 218 65-289 65-306 (312)
33 3zyj_A Leucine-rich repeat-con 100.0 1.9E-27 6.6E-32 211.7 21.1 220 65-289 45-265 (440)
34 2z62_A TOLL-like receptor 4, v 100.0 5.3E-28 1.8E-32 202.3 16.4 208 63-271 28-240 (276)
35 1ziw_A TOLL-like receptor 3; i 100.0 5E-28 1.7E-32 226.5 17.1 225 63-288 25-305 (680)
36 1xku_A Decorin; proteoglycan, 100.0 2.1E-27 7.3E-32 203.6 19.3 223 63-289 76-329 (330)
37 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-27 5E-32 223.4 19.5 225 64-289 382-619 (680)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-28 1.2E-32 222.8 14.5 223 63-289 52-438 (562)
39 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4.1E-32 203.0 16.7 219 66-289 10-233 (306)
40 2z62_A TOLL-like receptor 4, v 100.0 1.7E-27 5.9E-32 199.2 17.4 217 68-289 12-234 (276)
41 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4E-32 217.4 17.7 107 63-172 21-128 (520)
42 3oja_A Leucine-rich immune mol 100.0 3.2E-28 1.1E-32 219.2 12.9 213 63-289 34-247 (487)
43 3o53_A Protein LRIM1, AGAP0063 100.0 3.4E-28 1.1E-32 207.5 11.6 213 63-289 34-247 (317)
44 2o6q_A Variable lymphocyte rec 100.0 1.9E-26 6.6E-31 192.2 21.5 198 88-289 17-215 (270)
45 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-27 5.8E-32 220.1 16.6 204 83-289 346-555 (606)
46 2ft3_A Biglycan; proteoglycan, 99.9 5.3E-27 1.8E-31 201.4 18.1 223 63-289 78-330 (332)
47 2z80_A TOLL-like receptor 2, v 99.9 1.5E-27 5.1E-32 206.5 14.5 228 47-289 26-287 (353)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-26 3.8E-31 215.2 20.7 109 63-171 52-160 (635)
49 1wwl_A Monocyte differentiatio 99.9 9.1E-30 3.1E-34 216.8 -0.2 219 63-289 43-284 (312)
50 3j0a_A TOLL-like receptor 5; m 99.9 8.5E-27 2.9E-31 223.1 20.0 112 63-174 48-163 (844)
51 3vq2_A TLR4, TOLL-like recepto 99.9 4.4E-27 1.5E-31 217.4 17.1 225 63-289 32-317 (606)
52 1p9a_G Platelet glycoprotein I 99.9 2.7E-26 9.1E-31 193.3 18.3 198 63-268 10-208 (290)
53 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-26 1.1E-30 208.0 19.5 153 132-289 321-478 (520)
54 4ecn_A Leucine-rich repeat pro 99.9 6E-27 2E-31 222.5 14.8 200 63-268 491-710 (876)
55 3rfs_A Internalin B, repeat mo 99.9 3.5E-26 1.2E-30 190.9 16.8 206 63-280 41-247 (272)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.2E-26 2.5E-30 207.5 19.6 153 132-289 350-507 (562)
57 2z63_A TOLL-like receptor 4, v 99.9 3.3E-26 1.1E-30 209.8 17.0 177 63-240 28-210 (570)
58 2xwt_C Thyrotropin receptor; s 99.9 7.1E-26 2.4E-30 185.4 15.8 196 87-289 31-236 (239)
59 4fmz_A Internalin; leucine ric 99.9 3.2E-25 1.1E-29 191.2 20.2 213 63-289 110-343 (347)
60 1p9a_G Platelet glycoprotein I 99.9 2.2E-25 7.4E-30 187.7 18.2 178 63-243 31-208 (290)
61 3m19_A Variable lymphocyte rec 99.9 2.3E-25 7.7E-30 183.8 17.4 191 49-245 3-194 (251)
62 2z63_A TOLL-like receptor 4, v 99.9 1E-25 3.5E-30 206.6 14.8 222 63-289 282-528 (570)
63 4fmz_A Internalin; leucine ric 99.9 7.3E-25 2.5E-29 189.0 19.1 214 63-289 88-321 (347)
64 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-25 7.7E-30 203.5 16.6 225 50-289 3-233 (549)
65 2xwt_C Thyrotropin receptor; s 99.9 3.7E-25 1.3E-29 181.1 15.3 197 63-266 31-237 (239)
66 3rfs_A Internalin B, repeat mo 99.9 5.8E-25 2E-29 183.5 15.0 200 66-272 22-222 (272)
67 1o6v_A Internalin A; bacterial 99.9 2.2E-24 7.6E-29 193.3 18.8 209 63-289 177-385 (466)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-26 7.9E-31 196.2 5.4 213 63-289 10-224 (317)
69 4glp_A Monocyte differentiatio 99.9 2.9E-25 9.9E-30 188.7 12.2 219 64-289 65-304 (310)
70 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-24 1.8E-28 190.2 20.8 186 63-270 42-248 (457)
71 3m19_A Variable lymphocyte rec 99.9 5.8E-24 2E-28 175.3 18.4 179 88-270 15-194 (251)
72 4glp_A Monocyte differentiatio 99.9 5.5E-25 1.9E-29 187.0 12.3 201 63-269 91-308 (310)
73 1o6v_A Internalin A; bacterial 99.9 6.8E-24 2.3E-28 190.2 17.8 211 63-289 68-319 (466)
74 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 199.6 8.2 193 83-289 30-224 (487)
75 1h6u_A Internalin H; cell adhe 99.9 6.5E-24 2.2E-28 180.2 15.7 191 63-269 41-231 (308)
76 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-23 1.1E-27 185.0 20.8 205 63-289 64-296 (457)
77 2ast_B S-phase kinase-associat 99.9 2.6E-26 8.8E-31 197.2 0.2 231 52-289 38-282 (336)
78 2ca6_A RAN GTPase-activating p 99.9 4.8E-26 1.7E-30 199.3 0.5 227 63-289 32-313 (386)
79 3cvr_A Invasion plasmid antige 99.9 5.1E-24 1.8E-28 194.0 13.0 209 41-279 33-254 (571)
80 1h6u_A Internalin H; cell adhe 99.9 3.1E-23 1E-27 176.1 15.9 189 85-289 39-227 (308)
81 3g06_A SSPH2 (leucine-rich rep 99.9 5.1E-23 1.8E-27 189.5 16.8 201 63-289 61-294 (622)
82 4ay9_X Follicle-stimulating ho 99.9 5.4E-23 1.8E-27 177.7 14.8 233 51-289 9-256 (350)
83 3goz_A Leucine-rich repeat-con 99.9 2.3E-25 7.8E-30 193.4 -0.2 227 63-289 22-294 (362)
84 2o6s_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 163.1 14.7 159 87-251 28-186 (208)
85 3goz_A Leucine-rich repeat-con 99.9 5.7E-25 2E-29 190.9 0.9 223 67-289 2-263 (362)
86 2o6s_A Variable lymphocyte rec 99.9 2.5E-22 8.4E-27 160.8 15.2 163 110-280 27-190 (208)
87 4ay9_X Follicle-stimulating ho 99.9 1.7E-22 5.7E-27 174.6 14.4 222 56-285 7-232 (350)
88 1jl5_A Outer protein YOPM; leu 99.9 5.5E-23 1.9E-27 183.4 11.7 204 63-289 11-247 (454)
89 4g8a_A TOLL-like receptor 4; l 99.9 8.6E-23 2.9E-27 189.1 12.5 213 67-284 35-254 (635)
90 2ast_B S-phase kinase-associat 99.9 2.7E-24 9.1E-29 184.6 1.5 203 63-268 70-284 (336)
91 1jl5_A Outer protein YOPM; leu 99.9 1.2E-21 4.1E-26 174.8 18.4 206 63-289 153-406 (454)
92 2ca6_A RAN GTPase-activating p 99.9 4.8E-24 1.6E-28 186.6 0.8 210 79-289 24-284 (386)
93 3cvr_A Invasion plasmid antige 99.9 4.2E-21 1.4E-25 174.8 18.0 174 88-289 60-240 (571)
94 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-24 7.3E-29 192.9 -4.6 227 63-289 113-408 (461)
95 1z7x_W Ribonuclease inhibitor; 99.9 7E-24 2.4E-28 189.6 -3.0 226 64-289 86-351 (461)
96 1h6t_A Internalin B; cell adhe 99.9 2.3E-21 7.9E-26 163.2 11.6 168 63-243 46-213 (291)
97 2xot_A Amphoterin-induced prot 99.9 5.5E-21 1.9E-25 165.7 13.9 175 90-268 21-202 (361)
98 3e6j_A Variable lymphocyte rec 99.9 9.8E-21 3.3E-25 153.8 14.1 166 42-223 10-175 (229)
99 1h6t_A Internalin B; cell adhe 99.8 7.5E-21 2.6E-25 160.0 13.6 189 66-270 27-215 (291)
100 2v9t_B SLIT homolog 2 protein 99.8 1.7E-20 5.7E-25 151.5 14.8 152 67-221 15-166 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-20 6.5E-25 151.2 14.8 154 67-223 15-169 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.7E-25 163.9 13.0 175 66-243 21-202 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 3.8E-20 1.3E-24 149.4 14.7 152 90-244 14-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-20 1.9E-24 148.4 14.8 155 90-247 14-170 (220)
105 1m9s_A Internalin B; cell inva 99.8 1.1E-20 3.8E-25 173.7 11.9 168 63-243 43-210 (605)
106 1m9s_A Internalin B; cell inva 99.8 4.7E-20 1.6E-24 169.5 15.7 191 65-271 23-213 (605)
107 3e6j_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 146.9 16.6 155 89-247 21-176 (229)
108 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-20 1.9E-24 169.4 15.2 192 63-277 81-306 (622)
109 4ezg_A Putative uncharacterize 99.8 2.7E-20 9.2E-25 147.7 10.6 151 110-268 43-194 (197)
110 4ezg_A Putative uncharacterize 99.8 5.6E-20 1.9E-24 145.9 11.4 153 84-243 41-194 (197)
111 4b8c_D Glucose-repressible alc 99.8 1.1E-21 3.8E-26 184.3 0.1 163 50-224 162-333 (727)
112 1dce_A Protein (RAB geranylger 99.8 4.5E-22 1.5E-26 181.8 -3.5 196 84-286 346-567 (567)
113 1xeu_A Internalin C; cellular 99.8 5.5E-20 1.9E-24 152.5 9.4 171 85-270 17-187 (263)
114 1xeu_A Internalin C; cellular 99.8 3.7E-20 1.3E-24 153.5 6.2 168 63-244 19-186 (263)
115 2ell_A Acidic leucine-rich nuc 99.8 3.3E-18 1.1E-22 132.0 11.4 135 87-223 24-163 (168)
116 4b8c_D Glucose-repressible alc 99.8 2.2E-19 7.6E-24 168.7 5.7 183 87-274 173-360 (727)
117 1w8a_A SLIT protein; signaling 99.8 3.5E-18 1.2E-22 134.9 11.1 129 90-221 11-140 (192)
118 1dce_A Protein (RAB geranylger 99.7 4.3E-21 1.5E-25 175.3 -8.1 193 63-262 349-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4E-22 131.9 12.3 130 66-198 11-141 (192)
120 2ell_A Acidic leucine-rich nuc 99.7 8.8E-18 3E-22 129.6 9.6 136 63-201 24-164 (168)
121 2je0_A Acidic leucine-rich nuc 99.7 4.9E-18 1.7E-22 128.4 8.0 127 87-215 17-148 (149)
122 3sb4_A Hypothetical leucine ri 99.7 9.4E-18 3.2E-22 143.5 9.9 102 182-286 225-328 (329)
123 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.9E-22 126.3 7.0 128 63-192 17-149 (149)
124 2wfh_A SLIT homolog 2 protein 99.7 1E-16 3.6E-21 126.5 12.8 127 66-196 13-139 (193)
125 2wfh_A SLIT homolog 2 protein 99.7 3E-16 1E-20 123.8 14.4 127 90-220 13-139 (193)
126 3ogk_B Coronatine-insensitive 99.7 6.9E-19 2.4E-23 161.9 -2.3 128 63-191 112-251 (592)
127 2o6r_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 120.9 13.8 128 67-197 11-138 (177)
128 2o6r_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 121.1 13.3 112 135-246 28-140 (177)
129 3ogk_B Coronatine-insensitive 99.7 1.1E-18 3.7E-23 160.6 -2.5 137 151-287 285-444 (592)
130 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-16 1.6E-20 120.8 8.6 136 130-269 14-154 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.6 5.9E-16 2E-20 120.3 8.5 134 106-243 14-153 (176)
132 1ds9_A Outer arm dynein; leuci 99.6 2.5E-18 8.6E-23 136.4 -5.7 132 64-200 19-157 (198)
133 3sb4_A Hypothetical leucine ri 99.6 8.4E-16 2.9E-20 131.4 8.8 176 110-289 100-307 (329)
134 1ds9_A Outer arm dynein; leuci 99.6 6.2E-18 2.1E-22 134.1 -5.4 152 110-268 17-185 (198)
135 2p1m_B Transport inhibitor res 99.6 4.1E-17 1.4E-21 150.1 -1.2 128 63-190 105-242 (594)
136 4fdw_A Leucine rich hypothetic 99.6 5.4E-14 1.8E-18 123.2 17.0 123 159-286 248-377 (401)
137 2p1m_B Transport inhibitor res 99.6 2.6E-17 8.7E-22 151.5 -5.7 61 229-289 455-516 (594)
138 4fdw_A Leucine rich hypothetic 99.6 1E-13 3.5E-18 121.4 17.0 214 64-289 136-355 (401)
139 3g39_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 109.2 10.9 104 90-196 12-115 (170)
140 3g39_A Variable lymphocyte rec 99.5 5.1E-14 1.8E-18 108.7 11.0 106 66-174 12-117 (170)
141 2r9u_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 107.8 11.0 104 90-196 15-118 (174)
142 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 107.4 11.0 105 66-173 15-119 (174)
143 3un9_A NLR family member X1; l 99.4 2.3E-14 7.7E-19 124.4 -2.9 169 110-278 71-262 (372)
144 2ifg_A High affinity nerve gro 99.3 2.4E-12 8.2E-17 110.6 9.3 102 68-172 13-116 (347)
145 3un9_A NLR family member X1; l 99.3 1.2E-14 4.2E-19 126.0 -5.1 159 87-245 72-254 (372)
146 2ifg_A High affinity nerve gro 99.3 5.4E-12 1.8E-16 108.4 10.4 104 90-196 11-116 (347)
147 2ra8_A Uncharacterized protein 99.2 1.2E-11 4.1E-16 106.6 4.3 199 63-266 107-341 (362)
148 2ra8_A Uncharacterized protein 99.1 3.7E-11 1.3E-15 103.5 5.7 197 87-288 107-339 (362)
149 4gt6_A Cell surface protein; l 99.1 1.1E-08 3.7E-13 89.3 18.5 107 178-289 260-367 (394)
150 4fs7_A Uncharacterized protein 99.0 8.6E-09 2.9E-13 90.0 15.3 197 80-286 155-373 (394)
151 4fs7_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 83.0 15.8 180 102-289 153-353 (394)
152 4gt6_A Cell surface protein; l 98.8 7.8E-08 2.7E-12 83.9 14.9 127 154-288 260-387 (394)
153 3rw6_A Nuclear RNA export fact 98.8 3.9E-11 1.3E-15 98.6 -8.2 105 107-213 137-257 (267)
154 4h09_A Hypothetical leucine ri 98.6 1.6E-06 5.5E-11 75.0 16.9 107 178-288 235-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 2.3E-09 7.9E-14 83.5 -1.1 67 82-148 31-106 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2.7E-09 9.1E-14 83.2 -0.9 63 181-243 91-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 1.6E-08 5.5E-13 83.0 1.4 81 180-261 167-257 (267)
158 4h09_A Hypothetical leucine ri 98.4 1.1E-05 3.8E-10 69.7 15.4 147 130-282 212-359 (379)
159 3e4g_A ATP synthase subunit S, 98.2 7.3E-07 2.5E-11 68.1 3.5 83 111-193 61-149 (176)
160 3e4g_A ATP synthase subunit S, 98.2 6.4E-07 2.2E-11 68.4 2.4 84 87-170 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.8E-05 6.2E-10 61.5 1.7 115 153-267 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.2E-05 7.5E-10 61.1 0.6 10 87-96 41-50 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00035 1.2E-08 50.6 5.2 56 210-268 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.0006 2.1E-08 49.3 5.7 56 67-124 12-68 (130)
165 2lz0_A Uncharacterized protein 72.4 9.1 0.00031 25.6 5.5 13 130-142 38-50 (100)
166 2lz0_A Uncharacterized protein 62.5 25 0.00086 23.4 6.1 49 72-121 5-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.2e-41 Score=285.52 Aligned_cols=246 Identities=28% Similarity=0.445 Sum_probs=225.1
Q ss_pred cCCCCCCCCCCC--cccceeCCCC--CeeEEEeccCCCCCC--cCCccccCCCCCcEEEccC-CCCcccCCccccccccc
Q 045366 41 MNSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIRG--FLSPFVGYLSFLRSINLVN-NSLRAEIPHEVGNLFKL 113 (289)
Q Consensus 41 ~~~w~~~~~~c~--~~~~~c~~~~--~~v~~l~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 113 (289)
+.+|..+.++|. |.|+.|+... .+|+.++++++.+.+ .+|+.+..+++|++|++++ |.+.+.+|..|.++++|
T Consensus 24 l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L 103 (313)
T 1ogq_A 24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103 (313)
T ss_dssp GTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTC
T ss_pred ccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCC
Confidence 568998889998 9999998654 689999999999998 8999999999999999995 99998999999999999
Q ss_pred ccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCC-CCCEEEccC
Q 045366 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS-TLQEINVNG 192 (289)
Q Consensus 114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~ 192 (289)
++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 9999999999989999999999999999999999989999999999999999999999989999999998 999999999
Q ss_pred ccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271 (289)
Q Consensus 193 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 271 (289)
|.+++.+|..+..++ |++|++++|.+++..+. +..+++|++|++++|.+++.++. + ..+++|++|++++|++++.+
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECC
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcC
Confidence 999988999998887 99999999999887766 88889999999999999855554 3 37889999999999999889
Q ss_pred CccccCCCCCCeEeCcCC
Q 045366 272 QDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 272 ~~~~~~~~~L~~L~l~~N 289 (289)
|..+..+++|++|++++|
T Consensus 261 p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CGGGGGCTTCCEEECCSS
T ss_pred ChHHhcCcCCCEEECcCC
Confidence 999999999999999887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-35 Score=279.87 Aligned_cols=257 Identities=24% Similarity=0.415 Sum_probs=190.6
Q ss_pred hcChHhHHHHHh----------cCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCc---CC---------------
Q 045366 29 QANEADRLSLLA----------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGF---LS--------------- 80 (289)
Q Consensus 29 ~~~~~~~~~l~~----------~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~---~~--------------- 80 (289)
+..++|+.|+++ +++|+.+.++|.|.||.|+ .++|+.++++++.+.+. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~ 85 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS 85 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCc
Confidence 345678888875 5689988899999999998 38999999999888765 32
Q ss_pred --------ccccCCCCCcEEEccCCCCcccCCc--ccccccccccccccccccCCCCCccc-cCCCCCcEEEccCCcCCC
Q 045366 81 --------PFVGYLSFLRSINLVNNSLRAEIPH--EVGNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLEG 149 (289)
Q Consensus 81 --------~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~ 149 (289)
+.++.+++|++|+|++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++
T Consensus 86 ~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 165 (768)
T 3rgz_A 86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165 (768)
T ss_dssp TSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred CCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence 5778889999999999999988888 89999999999999999987777665 677888888888887765
Q ss_pred Ccchh---cc----------------------CCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc
Q 045366 150 EIPAE---IS----------------------NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS 204 (289)
Q Consensus 150 ~~~~~---~~----------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 204 (289)
..+.. +. .+++|++|++++|.+.+..|. ++.+++|++|++++|.+++.+|..++
T Consensus 166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 55544 33 344555555555555544444 66777777777777777766666777
Q ss_pred CCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeE
Q 045366 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284 (289)
Q Consensus 205 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 284 (289)
.+++|++|++++|.+.+..+.. .+++|++|++++|++++.+|..++..+++|++|++++|++++.+|..++++++|++|
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 7777777777777776655544 566677777777777666676665334777777777777777777777777777777
Q ss_pred eCcCC
Q 045366 285 DINRN 289 (289)
Q Consensus 285 ~l~~N 289 (289)
++++|
T Consensus 324 ~L~~n 328 (768)
T 3rgz_A 324 ALSSN 328 (768)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77665
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.8e-35 Score=253.63 Aligned_cols=239 Identities=20% Similarity=0.295 Sum_probs=217.8
Q ss_pred CCCCCCCCcccceeCC--------CCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccc
Q 045366 45 NNSINLCQWTGVTCGH--------RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNL 116 (289)
Q Consensus 45 ~~~~~~c~~~~~~c~~--------~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 116 (289)
....++|.|.|+.|.. ...+++.|+++++.+. .+|+.+.++++|++|++++|.+. .+|..+.++++|++|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 4566889999999942 2368999999999998 57888888999999999999999 789999999999999
Q ss_pred cccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccC---------CCCCceeeeecccccccCChhccCCCCCCE
Q 045366 117 TLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN---------LLKFQILNIAKNHLKGQLPASIGNLSTLQE 187 (289)
Q Consensus 117 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 187 (289)
++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+..+++|++
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 99999999 88999999999999999999888888877654 999999999999999 78889999999999
Q ss_pred EEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN 266 (289)
Q Consensus 188 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 266 (289)
|++++|.++ .+|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+. .+++|++|++++|.
T Consensus 211 L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCV 288 (328)
T ss_dssp EEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCT
T ss_pred EEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCC
Confidence 999999999 4677899999999999999999888776 89999999999999999889998876 89999999999999
Q ss_pred cccccCccccCCCCCCeEeCcCC
Q 045366 267 LTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 267 l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.+.+|+.++++++|+.+++..|
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999998753
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-35 Score=274.63 Aligned_cols=241 Identities=22% Similarity=0.351 Sum_probs=185.7
Q ss_pred CCCCCCCCCCc---ccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC---------------------
Q 045366 43 SWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS--------------------- 98 (289)
Q Consensus 43 ~w~~~~~~c~~---~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--------------------- 98 (289)
+|+.+.++|.| .||.|+.. ++|+.|+|+++++.|.+|+.++++++|+.|+|++|.
T Consensus 59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 69888899999 99999876 799999999999999999999999999999999884
Q ss_pred ---------------------------------------------------------CcccCCccccccccccccccccc
Q 045366 99 ---------------------------------------------------------LRAEIPHEVGNLFKLQNLTLTNN 121 (289)
Q Consensus 99 ---------------------------------------------------------l~~~~~~~~~~l~~L~~L~L~~n 121 (289)
+++ +|..+.++++|++|++++|
T Consensus 138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n 216 (636)
T 4eco_A 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216 (636)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC
Confidence 334 7888999999999999999
Q ss_pred ccCCC-----------------CCcccc--CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccc-ccc-cCChhcc
Q 045366 122 YFSGK-----------------IPTNLS--RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH-LKG-QLPASIG 180 (289)
Q Consensus 122 ~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~ 180 (289)
.+++. +|..+. .+++|++|++++|.+.+.+|..|+.+++|++|++++|+ +++ .+|..++
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence 99975 899988 99999999999999998999999999999999999998 877 6777666
Q ss_pred CC------CCCCEEEccCccCcccCCc--cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhc
Q 045366 181 NL------STLQEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV 252 (289)
Q Consensus 181 ~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 252 (289)
.+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.|..+.+..+++|++|++++|.++ .+|..+.
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~- 373 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFC- 373 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSE-
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhh-
Confidence 65 77788888877777 6676 777777777777777777754445555556666666666655 5554443
Q ss_pred CCCC-CcEEEccccccccccCccccCCC--CCCeEeCcCC
Q 045366 253 NLPN-LRFFIISGNNLTGSLQDSLSNTT--NLHKLDINRN 289 (289)
Q Consensus 253 ~~~~-L~~L~Ls~n~l~~~~~~~~~~~~--~L~~L~l~~N 289 (289)
.+++ |++|++++|.++ .+|..+..++ +|+.|++++|
T Consensus 374 ~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 4444 555555555555 4444443332 4444444443
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-34 Score=245.15 Aligned_cols=224 Identities=22% Similarity=0.349 Sum_probs=211.9
Q ss_pred CeeEEEeccC-CCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRH-QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
++++.|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..|.++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 6789999995 999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCcchhccCCC-CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366 142 ASNNKLEGEIPAEISNLL-KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 142 l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (289)
+++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 999999988999999998 999999999999999999999887 999999999999888999999999999999999999
Q ss_pred ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 221 GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.++.+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|.. ..+++|+.+++++|
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecCcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 8777788889999999999999988898876 8999999999999999999986 88999999999987
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-33 Score=265.50 Aligned_cols=226 Identities=32% Similarity=0.546 Sum_probs=180.4
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+.+..|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 46677777777777777777777777777777777777777777777788888888888877777777778888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc-------------------
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR------------------- 203 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------------------- 203 (289)
++|++.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 8888877778888888888888888888887788888888888888888887766555432
Q ss_pred ---------------------------------------------------cCCCCCcEEeccCCcCcccCCC-CCCCCC
Q 045366 204 ---------------------------------------------------SHVRNLISFNVGLNQFSGMFPP-INNISS 231 (289)
Q Consensus 204 ---------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~-~~~~~~ 231 (289)
..+++|++||+++|.++|.+|. +..++.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 2346678888888888877776 888888
Q ss_pred CCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 232 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
|++|++++|+++|.+|..+. .+++|++|||++|+++|.+|..++++++|++||+++|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~-~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCEEeCcCCccCCCCChHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 88888888888888888777 7888888888888888888888888888888888887
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-34 Score=270.86 Aligned_cols=253 Identities=22% Similarity=0.283 Sum_probs=212.4
Q ss_pred ChHhHHHHHh------cCCCCCCC-----CC--CCc------------ccceeCCCCCeeEEEeccCCCCCCcCCccccC
Q 045366 31 NEADRLSLLA------MNSWNNSI-----NL--CQW------------TGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGY 85 (289)
Q Consensus 31 ~~~~~~~l~~------~~~w~~~~-----~~--c~~------------~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~ 85 (289)
..+|+.|+.+ -.+|+.+. ++ |.| .||.|+.. .+|+.|+|+++++.|.+|+.+++
T Consensus 267 ~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~ 345 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQ 345 (876)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGG
T ss_pred chHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhc
Confidence 3467778877 23797665 55 999 99999874 89999999999999999999999
Q ss_pred CCCCcEEEc-cCCCCccc--------------------------------------------------------------
Q 045366 86 LSFLRSINL-VNNSLRAE-------------------------------------------------------------- 102 (289)
Q Consensus 86 l~~L~~L~L-~~n~l~~~-------------------------------------------------------------- 102 (289)
+++|+.|+| ++|.+.|.
T Consensus 346 L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l 425 (876)
T 4ecn_A 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425 (876)
T ss_dssp CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCC
T ss_pred cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccch
Confidence 999999999 77654333
Q ss_pred --------------CCcccccccccccccccccccCC-----------------CCCcccc--CCCCCcEEEccCCcCCC
Q 045366 103 --------------IPHEVGNLFKLQNLTLTNNYFSG-----------------KIPTNLS--RCSNLVKFEASNNKLEG 149 (289)
Q Consensus 103 --------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~ 149 (289)
+|..|.++++|++|++++|.+++ .+|..++ .+++|++|++++|.+.+
T Consensus 426 ~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~ 505 (876)
T 4ecn_A 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505 (876)
T ss_dssp CTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC
T ss_pred hhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc
Confidence 77889999999999999999997 3898887 99999999999999999
Q ss_pred CcchhccCCCCCceeeeeccc-ccc-cCChhccCCC-------CCCEEEccCccCcccCCc--cccCCCCCcEEeccCCc
Q 045366 150 EIPAEISNLLKFQILNIAKNH-LKG-QLPASIGNLS-------TLQEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQ 218 (289)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~ 218 (289)
.+|..|+.+++|++|++++|+ +++ .+|..++.++ +|+.|++++|.++ .+|. .++.+++|+.|++++|.
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 999999999999999999998 887 6777665544 9999999999998 7887 88899999999999999
Q ss_pred CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCC-CcEEEccccccccccCccccCCCC--CCeEeCcCC
Q 045366 219 FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPN-LRFFIISGNNLTGSLQDSLSNTTN--LHKLDINRN 289 (289)
Q Consensus 219 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~--L~~L~l~~N 289 (289)
+..++ .+..+++|++|++++|.++ .+|..+. .+++ |+.|++++|.++ .+|..+..++. |+.|++++|
T Consensus 585 l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred cccch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 88444 7888888999999999888 7887765 6777 888888888888 67776665543 777777765
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=3.2e-32 Score=231.23 Aligned_cols=239 Identities=20% Similarity=0.273 Sum_probs=210.0
Q ss_pred CCCCcccceeCCCC---------CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc--CCccccccccccccc
Q 045366 49 NLCQWTGVTCGHRH---------QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLT 117 (289)
Q Consensus 49 ~~c~~~~~~c~~~~---------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ 117 (289)
..|.|.++.|.... .+++.|++++|.++...+..+..+++|++|++++|.+... .+..+.++++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 34778888886532 5799999999999976666789999999999999999733 366777899999999
Q ss_pred ccccccCCCCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366 118 LTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 118 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
+++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999998 677789999999999999999985544 57899999999999999999888888999999999999999998
Q ss_pred c-cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc
Q 045366 197 G-RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274 (289)
Q Consensus 197 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 274 (289)
+ ..|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++ ++...+..+++|++|++++|++++..|..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 6 5788999999999999999999998765 8899999999999999984 44444448999999999999999999999
Q ss_pred ccCCC-CCCeEeCcCC
Q 045366 275 LSNTT-NLHKLDINRN 289 (289)
Q Consensus 275 ~~~~~-~L~~L~l~~N 289 (289)
+..++ +|++|++++|
T Consensus 243 ~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCCCTTCCEEECTTC
T ss_pred HHhhhccCCEEEccCC
Confidence 99985 9999999987
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=4e-31 Score=235.47 Aligned_cols=224 Identities=19% Similarity=0.193 Sum_probs=200.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+.+|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57899999999999988899999999999999999999888889999999999999999999666668999999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
++|.+....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 9999986667789999999999999954 44444457899999999999999998 455 47889999999999999999
Q ss_pred cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
..+. +..+++|++|++++|++++..+ ..+..+++|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred cChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 8776 9999999999999999984444 44558999999999999999777788999999999999988
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.8e-31 Score=238.50 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=200.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+++..+..|..+++|+.|++++|.+.+..+.+|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57999999999999988999999999999999999999888899999999999999999999666677899999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecc-cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKN-HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
++|.+....+..|..+++|++|++++| .+....+..+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 999998666678999999999999985 4444444578999999999999999985 44 58889999999999999999
Q ss_pred cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
..+. +..+++|++|++++|++++..+.. +..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 8776 899999999999999998544544 448999999999999999777788999999999999988
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8.7e-31 Score=234.10 Aligned_cols=135 Identities=20% Similarity=0.221 Sum_probs=99.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-CcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
++++.|++++|.+++..|..++.+++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56889999999988877888888888888888888886443 56688888888888888888766677777788888888
Q ss_pred ccCCcCCCCcchh--ccCCCCCceeeeecccccccCChh-ccCCCCCCEEEccCccCcc
Q 045366 142 ASNNKLEGEIPAE--ISNLLKFQILNIAKNHLKGQLPAS-IGNLSTLQEINVNGNRLSG 197 (289)
Q Consensus 142 l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 197 (289)
+++|.+.+..+.. |..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8887776544443 667777777777777776555544 5666666666666665543
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.9e-32 Score=233.05 Aligned_cols=225 Identities=20% Similarity=0.231 Sum_probs=192.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+++..+..+..+++|++|++++|++++..|.+|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57999999999999877778999999999999999999888889999999999999999999544445889999999999
Q ss_pred cCCcCCCCcc-hhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366 143 SNNKLEGEIP-AEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 143 ~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (289)
++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999984333 478999999999999994 66666778999999999999999999888999999999999999999987
Q ss_pred ccCCC-CCCCCCCCEEEccCCccccc-------------------------------CchhhhcCCCCCcEEEccccccc
Q 045366 221 GMFPP-INNISSLEYIFIHKNRYHGS-------------------------------LPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 221 ~~~~~-~~~~~~L~~L~l~~n~l~~~-------------------------------~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
..+.. +..+++|++|++++|++++. +|..+. .+++|++|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLK 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh-cccCCCEEECCCCCCC
Confidence 55443 44567888999988888742 233333 7899999999999999
Q ss_pred cccCcc-ccCCCCCCeEeCcCC
Q 045366 269 GSLQDS-LSNTTNLHKLDINRN 289 (289)
Q Consensus 269 ~~~~~~-~~~~~~L~~L~l~~N 289 (289)
.+|.. +.++++|++|++++|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSS
T ss_pred -ccCHHHHhcCCCCCEEEeeCC
Confidence 55554 699999999999987
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=7.6e-30 Score=214.48 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=146.0
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
+.++++++++... |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666666543 3322 356777777777776655566677777777777777776555666777777777777777
Q ss_pred c-CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC
Q 045366 146 K-LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP 224 (289)
Q Consensus 146 ~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 224 (289)
. +....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 554446666777777777777777766556666677777777777777765555556667777777777777776665
Q ss_pred C-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 225 P-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 225 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
. +..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 4 66667777777777777644454443 6677777777777777555556677777777777665
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-29 Score=217.95 Aligned_cols=232 Identities=18% Similarity=0.294 Sum_probs=176.8
Q ss_pred CCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc
Q 045366 50 LCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120 (289)
Q Consensus 50 ~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 120 (289)
.|.+..+.|... .+.++.+++++|.+++..+..+..+++|++|++++|.+.+..|.+|.++++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 456777777532 25789999999999988887899999999999999999988899999999999999999
Q ss_pred cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc
Q 045366 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 9998 6776554 689999999999887667778888899999998888853 55667778888888888887776 3
Q ss_pred CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
+|..+. ++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhcc
Confidence 444433 5777777777777766544 66667777777777777643333333 6677777777777776 66666777
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|++++|
T Consensus 262 l~~L~~L~l~~N 273 (330)
T 1xku_A 262 HKYIQVVYLHNN 273 (330)
T ss_dssp CSSCCEEECCSS
T ss_pred CCCcCEEECCCC
Confidence 777777777665
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.4e-30 Score=230.21 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred CChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcC
Q 045366 175 LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVN 253 (289)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 253 (289)
.|..++.+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|++++..|..+. .
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-G 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-T
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-c
Confidence 344445555555555555555555555555555666666666655555443 55555666666666665533343333 5
Q ss_pred CCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 254 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 566666666666666444445566666666666655
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=230.67 Aligned_cols=226 Identities=20% Similarity=0.229 Sum_probs=181.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57889999999999888889999999999999999999888899999999999999999998555566888999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999877788888899999999999988877777888888888888888888765555677777888888877777766
Q ss_pred CCC-CCCCCCCC------------------------EEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 223 FPP-INNISSLE------------------------YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 223 ~~~-~~~~~~L~------------------------~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
.+. +..+++|+ +|++++|+++ .+|...+..+++|+.|++++|.+++..+..|..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 553 55555444 5555555555 455544557778888888888877666677778
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|++++|
T Consensus 271 l~~L~~L~L~~n 282 (477)
T 2id5_A 271 LLRLQEIQLVGG 282 (477)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEECCCC
Confidence 888888888776
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-29 Score=216.88 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=165.7
Q ss_pred CCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc
Q 045366 50 LCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120 (289)
Q Consensus 50 ~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 120 (289)
.|.+..+.|... .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 356777777532 15789999999999988888999999999999999999988899999999999999999
Q ss_pred cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc
Q 045366 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
|.+. .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9998 6776655 799999999999987667779999999999999999863 556666665 66666666666653
Q ss_pred CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
+|..+. ++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+ ..+++|++|++++|+++ .+|..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChhhhc
Confidence 343332 4566666666666555433 5555566666666666553222222 25556666666666555 55555555
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|++++|
T Consensus 263 l~~L~~L~l~~N 274 (332)
T 2ft3_A 263 LKLLQVVYLHTN 274 (332)
T ss_dssp CTTCCEEECCSS
T ss_pred CccCCEEECCCC
Confidence 666666665554
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=5.2e-29 Score=207.81 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=190.0
Q ss_pred CCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC
Q 045366 48 INLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127 (289)
Q Consensus 48 ~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 127 (289)
.+.|.|.|+.|... ...+.++++++.++. +|..+. +++++|++++|++.+..+.+|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 46899999988643 456789999999885 555444 68999999999999777778999999999999999999555
Q ss_pred CccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCC
Q 045366 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVR 207 (289)
Q Consensus 128 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 207 (289)
+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 56678899999999999999977777889999999999999999987788899999999999999999976667789999
Q ss_pred CCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 208 ~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
+|++|++++|.+++..+. +..+++|++|++++|+++ .++...+..+++|+.|++++|.+..
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence 999999999999988776 888999999999999998 6776666689999999999998863
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.2e-30 Score=224.35 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=53.0
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 143 (289)
+++.++++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 34444444444444444444555555555555555554444445555555555555555542222223445555555555
Q ss_pred CCcCCCCcchhccCCCCCceeeeeccccc
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
+|.+.+..+..|..+++|++|++++|.+.
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCC
Confidence 55554444444555555555555555443
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1e-28 Score=207.58 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=188.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 141 (289)
++++.|+++++.+++..+..+..+++|++|++++|.+++..|.+|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 689999999999998888889999999999999999998889999999999999999997 8766688899999999999
Q ss_pred ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99999998778889999999999999999997777779999999999999999997767789999999999999999998
Q ss_pred cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
..+. +..+++|++|++++|+++ .++...+..+++|++|++++|.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccC
Confidence 8665 899999999999999998 5666655589999999999998874
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.2e-29 Score=224.59 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=178.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+.+..|..|..+++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 67888888888888877888888888888888888888666666788888888888888888777777888888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCC--------------
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN-------------- 208 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-------------- 208 (289)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 888887666777778888888888888777555556677777777777777766555555555554
Q ss_pred ----------CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 209 ----------LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 209 ----------L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
|++|++++|.+++.+.. +..+++|++|++++|.++ .++...+..+++|++|++++|++++..|..|.+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 55555555666654433 678899999999999998 455554558999999999999999888999999
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|++++|
T Consensus 295 l~~L~~L~L~~N 306 (477)
T 2id5_A 295 LNYLRVLNVSGN 306 (477)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEECCCC
Confidence 999999999987
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.6e-29 Score=215.40 Aligned_cols=199 Identities=21% Similarity=0.307 Sum_probs=185.7
Q ss_pred CCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366 86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN 165 (289)
Q Consensus 86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (289)
.++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999998 68888999999999999999999 89999999999999999999998 8899999999999999
Q ss_pred eecccccccCChhccC---------CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEE
Q 045366 166 IAKNHLKGQLPASIGN---------LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIF 236 (289)
Q Consensus 166 l~~n~~~~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 236 (289)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++.++.+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 9999888888877654 999999999999999 788899999999999999999998776788999999999
Q ss_pred ccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 237 IHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 237 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 236 Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 236 LRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 999999988887766 8999999999999999999999999999999999986
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.6e-29 Score=230.60 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=121.9
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|++++|.+++..|..|+.+++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999888888999999999999999998888888999999999999999988777888888889999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCc--EEeccCCcCc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI--SFNVGLNQFS 220 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~l~ 220 (289)
++|.+.+..+..++.+++|++|++++|.+.+..++.+..+++|++|++++|.+++..+..++.+++|+ ++++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88888866567788888888888888887754333344477777777777766654444455555555 4444444443
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-29 Score=233.07 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=54.2
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 143 (289)
+++.|++++|.+.+..+..++.+++|+.|++++|.+.+..|..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 34444444454444444445555555555555555554444444555555555555555543222334455555555555
Q ss_pred CCcCCCCcchhccCCCCCceeeeeccccc
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
+|.+.+..|..|+.+++|++|++++|.+.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 55555444444555555555555555443
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=215.49 Aligned_cols=224 Identities=17% Similarity=0.211 Sum_probs=151.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46677777777776655555677778888888888877666667777888888888888877666666777888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC----------------------
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP---------------------- 200 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---------------------- 200 (289)
++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++...
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 8887774444446777888888888887776666667777777777777776543210
Q ss_pred -------------------------------------ccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcc
Q 045366 201 -------------------------------------STRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRY 242 (289)
Q Consensus 201 -------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l 242 (289)
..+..+++|++|++++|.+.+..+. +..+++|++|++++|++
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 1233456667777777777665444 66666777777777766
Q ss_pred cccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+ .++.... .+++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 285 ~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 285 V-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp C-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred c-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC
Confidence 5 3443332 5666666666666666 44555555666666666554
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.8e-28 Score=225.01 Aligned_cols=246 Identities=15% Similarity=0.197 Sum_probs=192.1
Q ss_pred cCCCCCCCCCCC----cccceeC------CC----------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCc
Q 045366 41 MNSWNNSINLCQ----WTGVTCG------HR----------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100 (289)
Q Consensus 41 ~~~w~~~~~~c~----~~~~~c~------~~----------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 100 (289)
+++|.++..||. |..+.|+ .. ..+++.++++++.+....+..+..+++|+.|++++|.+.
T Consensus 9 l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~ 88 (597)
T 3oja_B 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88 (597)
T ss_dssp --CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred ccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC
Confidence 567887776663 4433332 10 145678888888888776667888999999999999999
Q ss_pred ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhcc
Q 045366 101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180 (289)
Q Consensus 101 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 180 (289)
+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|+.+++|++|++++|.+.+..|..+.
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 88888999999999999999999987778889999999999999999865556678999999999999999988888888
Q ss_pred CCCCCCEEEccCccCcccC-----------------------------------------------------------Cc
Q 045366 181 NLSTLQEINVNGNRLSGRI-----------------------------------------------------------PS 201 (289)
Q Consensus 181 ~~~~L~~L~l~~n~~~~~~-----------------------------------------------------------~~ 201 (289)
.+++|++|++++|.+++.. +.
T Consensus 169 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 248 (597)
T 3oja_B 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248 (597)
T ss_dssp TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence 8999999988888776421 12
Q ss_pred cccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366 202 TRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN 280 (289)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 280 (289)
.+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++ +|.... .+++|+.|+|++|.++ .+|..+..+++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~ 325 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDR 325 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccc-cCCCCcEEECCCCCCC-ccCcccccCCC
Confidence 245667888888888888877665 7788888888888888873 554443 6788888888888887 56666777777
Q ss_pred CCeEeCcCC
Q 045366 281 LHKLDINRN 289 (289)
Q Consensus 281 L~~L~l~~N 289 (289)
|+.|++++|
T Consensus 326 L~~L~L~~N 334 (597)
T 3oja_B 326 LENLYLDHN 334 (597)
T ss_dssp CSEEECCSS
T ss_pred CCEEECCCC
Confidence 777777765
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.5e-28 Score=224.01 Aligned_cols=226 Identities=17% Similarity=0.198 Sum_probs=131.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCc-cccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT-NLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 141 (289)
++++.+++++|.++ .+|+.+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 34555555555554 3444555555555555555555544455555555555555555555544433 255566666666
Q ss_pred ccCCcCCCCc--chhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc-cccCCCCCcEEeccCCc
Q 045366 142 ASNNKLEGEI--PAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRNLISFNVGLNQ 218 (289)
Q Consensus 142 l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~ 218 (289)
+++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 6666665433 45566666666666666666655566666666666666666666544332 35666666666666666
Q ss_pred CcccCCC-CCCCCCCCEEEccCCccccc-Cc-hhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 219 FSGMFPP-INNISSLEYIFIHKNRYHGS-LP-LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 219 l~~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.+..+. +..+++|++|++++|.+.+. ++ ...+..+++|++|++++|++++..|..+.++++|++|++++|
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 6655444 56666666666666666532 11 122235666666666666666555666666666666666655
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.7e-28 Score=215.02 Aligned_cols=220 Identities=16% Similarity=0.191 Sum_probs=193.0
Q ss_pred eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
...+++++.+++. +|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3457777777765 455444 6899999999999988899999999999999999999988888999999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccC
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|+ +....+..+..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 99997767779999999999999999997777789999999999999954 5544455789999999999999999976
Q ss_pred CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.+..+++|++|++++|.+++..|..+ .++++|+.|++++|++++..+..|.++++|+.|+|++|
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 458888999999999999985555554 49999999999999999888999999999999999987
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.2e-29 Score=230.05 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=137.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
+.++.|++++|.+++..|..+..+++|++|++++|++.+..|.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999999888889999999999999999999888889999999999999999999766667999999999999
Q ss_pred cCCcCCC-CcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccC---------------
Q 045366 143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSH--------------- 205 (289)
Q Consensus 143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------------- 205 (289)
++|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999985 456788999999999999998544444 67889999999999999998777766654
Q ss_pred ---------CCCCcEEeccCCcCccc
Q 045366 206 ---------VRNLISFNVGLNQFSGM 222 (289)
Q Consensus 206 ---------~~~L~~L~l~~n~l~~~ 222 (289)
+++|++|++++|.+++.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ccchhhHhhcccccEEEccCCccccc
Confidence 56777777777777653
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.7e-29 Score=234.67 Aligned_cols=207 Identities=22% Similarity=0.302 Sum_probs=168.1
Q ss_pred CCccccCCCCCcEEEccCCCCccc-----------------CCcccc--cccccccccccccccCCCCCccccCCCCCcE
Q 045366 79 LSPFVGYLSFLRSINLVNNSLRAE-----------------IPHEVG--NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVK 139 (289)
Q Consensus 79 ~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 139 (289)
+|+.++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 678899999999999999999985 899988 9999999999999999999999999999999
Q ss_pred EEccCCc-CCC-CcchhccCC------CCCceeeeecccccccCCh--hccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366 140 FEASNNK-LEG-EIPAEISNL------LKFQILNIAKNHLKGQLPA--SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL 209 (289)
Q Consensus 140 L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 209 (289)
|++++|+ +++ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++|++++|.++|.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 887 788888776 89999999999998 7887 88999999999999999987788 78888888
Q ss_pred cEEeccCCcCcccCCCCCCCCC-CCEEEccCCcccccCchhhhcC--CCCCcEEEccccccccccCcccc-------CCC
Q 045366 210 ISFNVGLNQFSGMFPPINNISS-LEYIFIHKNRYHGSLPLDIGVN--LPNLRFFIISGNNLTGSLQDSLS-------NTT 279 (289)
Q Consensus 210 ~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~-------~~~ 279 (289)
++|++++|.++.++..+..+++ |++|++++|.++ .+|..+. . +++|++|++++|.+++.+|..+. .++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 8888888888755545777777 888888888777 6665433 2 23666677777666666665555 555
Q ss_pred CCCeEeCcCC
Q 045366 280 NLHKLDINRN 289 (289)
Q Consensus 280 ~L~~L~l~~N 289 (289)
+|++|++++|
T Consensus 434 ~L~~L~Ls~N 443 (636)
T 4eco_A 434 NVSSINLSNN 443 (636)
T ss_dssp CEEEEECCSS
T ss_pred CCCEEECcCC
Confidence 6666666554
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.1e-28 Score=230.97 Aligned_cols=144 Identities=21% Similarity=0.242 Sum_probs=84.0
Q ss_pred CCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-CcccccccccccccccccccCCCCCc
Q 045366 51 CQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQNLTLTNNYFSGKIPT 129 (289)
Q Consensus 51 c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~ 129 (289)
|++..+.+ ..++++.|++++|.+++..+..|..+++|+.|++++|...+.+ |.+|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45555555 2267778888888877766666666666666666666443333 55566666666666666666655555
Q ss_pred cccCCCCCcEEEccCCcCCCCcchh--ccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCc
Q 045366 130 NLSRCSNLVKFEASNNKLEGEIPAE--ISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 130 ~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 196 (289)
.|.++++|++|++++|.+.+..+.. |+.+++|++|++++|.+.+..+ ..++++++|++|++++|.++
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 6666666666666666655433333 5555556666665555554332 34555555555555555443
No 32
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.4e-30 Score=216.99 Aligned_cols=218 Identities=15% Similarity=0.169 Sum_probs=181.2
Q ss_pred eEEEeccCCCCC-CcCCcccc-------CCCCCcEEEccCCCCcccCCccc--ccccccccccccccccCCCCCccccCC
Q 045366 65 VIGLDLRHQSIR-GFLSPFVG-------YLSFLRSINLVNNSLRAEIPHEV--GNLFKLQNLTLTNNYFSGKIPTNLSRC 134 (289)
Q Consensus 65 v~~l~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l 134 (289)
++.+++++|.+. ..++..+. .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 444555555552 23444443 68999999999999998888876 8899999999999999966 8777766
Q ss_pred -----CCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--CChhc--cCCCCCCEEEccCccCccc--CC-cc
Q 045366 135 -----SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASI--GNLSTLQEINVNGNRLSGR--IP-ST 202 (289)
Q Consensus 135 -----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~--~~-~~ 202 (289)
++|++|++++|.+.+..+..|+.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. .+ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8999999999999988789999999999999999998754 34444 8899999999999999831 22 34
Q ss_pred ccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366 203 RSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN 280 (289)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 280 (289)
+..+++|++|++++|.+++..+ .+..+++|++|++++|+++ .+|..++ ++|++|++++|++++. |. +..+++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 4678999999999999998764 2677899999999999998 8887664 8999999999999965 66 999999
Q ss_pred CCeEeCcCC
Q 045366 281 LHKLDINRN 289 (289)
Q Consensus 281 L~~L~l~~N 289 (289)
|++|++++|
T Consensus 298 L~~L~L~~N 306 (312)
T 1wwl_A 298 VGNLSLKGN 306 (312)
T ss_dssp EEEEECTTC
T ss_pred CCEEeccCC
Confidence 999999988
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=211.73 Aligned_cols=220 Identities=15% Similarity=0.175 Sum_probs=192.6
Q ss_pred eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
...+++++.+++. +|..+. ++++.|+|++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3467777777764 455454 7899999999999988889999999999999999999977778899999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccC
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+ +....+..+..+++|++|++++|.++.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 99996666789999999999999999997777789999999999999955 5544456799999999999999999965
Q ss_pred CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.+..+++|++|++++|++++..+.. +..+++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cccCCCcccCEEECCCCccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 45788899999999999998554544 448999999999999999888899999999999999987
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=5.3e-28 Score=202.26 Aligned_cols=208 Identities=21% Similarity=0.213 Sum_probs=160.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|++++|.+++..+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45788888888888776667888888888888888887766677888888888888888887666677888888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCc----EEeccCC
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI----SFNVGLN 217 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n 217 (289)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ ++++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888766555678888888888888888753 577788888888888888888766666666666666 7888888
Q ss_pred cCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366 218 QFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271 (289)
Q Consensus 218 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 271 (289)
.+.+..+......+|++|++++|+++ .+|...+..+++|+.|++++|.+....
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 88877666434457888888888887 566665557888888888888877544
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5e-28 Score=226.54 Aligned_cols=225 Identities=20% Similarity=0.249 Sum_probs=164.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+++..+..+..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57889999999998877778888999999999999998888888888999999999999888544456888899999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc--CCCCCcEEeccCCcCc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS--HVRNLISFNVGLNQFS 220 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~ 220 (289)
++|.+.+..+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++ .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99988866667888888999999999888877777788888888888888887755444333 3456666666666665
Q ss_pred ccCCC----------------------------------------------------CCCC--CCCCEEEccCCcccccC
Q 045366 221 GMFPP----------------------------------------------------INNI--SSLEYIFIHKNRYHGSL 246 (289)
Q Consensus 221 ~~~~~----------------------------------------------------~~~~--~~L~~L~l~~n~l~~~~ 246 (289)
+..+. +..+ ++|++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 44332 2222 22666666666665333
Q ss_pred chhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 247 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
+..+ ..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus 265 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 265 NDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp TTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 3333 2566666666666666666666666666666666654
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.1e-27 Score=203.61 Aligned_cols=223 Identities=14% Similarity=0.157 Sum_probs=129.3
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+++..|..++.+++|++|++++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 78999999999999888999999999999999999987 4554443 57777777777776555555666677777777
Q ss_pred cCCcCCC--CcchhccCCCCCceeeeeccccc---------------------ccCChhccCCCCCCEEEccCccCcccC
Q 045366 143 SNNKLEG--EIPAEISNLLKFQILNIAKNHLK---------------------GQLPASIGNLSTLQEINVNGNRLSGRI 199 (289)
Q Consensus 143 ~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~---------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~ 199 (289)
++|.+.. ..+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+++..
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 7766642 44555666666666666655554 333444444455555555555544444
Q ss_pred CccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcC------CCCCcEEEcccccccc--cc
Q 045366 200 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVN------LPNLRFFIISGNNLTG--SL 271 (289)
Q Consensus 200 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~~L~~L~Ls~n~l~~--~~ 271 (289)
+..+..+++|++|++++|.++.++..+..+++|++|++++|.++ .++...+.. .+.++.|++++|.+.. ..
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccC
Confidence 44444455555555555555433333444445555555555544 233222211 2344455555554431 23
Q ss_pred CccccCCCCCCeEeCcCC
Q 045366 272 QDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 272 ~~~~~~~~~L~~L~l~~N 289 (289)
|..|..+++++.+++++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 344555555555555554
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.5e-27 Score=223.39 Aligned_cols=225 Identities=19% Similarity=0.232 Sum_probs=181.0
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC-cccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.++.+++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56677777777777777788888888888888888876555 56788888888888888887777777888888888888
Q ss_pred cCCcCC--CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC--------ccccCCCCCcEE
Q 045366 143 SNNKLE--GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP--------STRSHVRNLISF 212 (289)
Q Consensus 143 ~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L 212 (289)
++|.+. +..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 888775 4667788888889999998888887667778888889999998888875322 236778888999
Q ss_pred eccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc-CCCCCCeEeCcCC
Q 045366 213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS-NTTNLHKLDINRN 289 (289)
Q Consensus 213 ~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~N 289 (289)
++++|.++.+++. +..+++|++|++++|+++ .+|...+..+++|+.|++++|++++..+..+. .+++|+.|++++|
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 9998888876665 788888999999988887 67777666788899999999988877777676 7888889988887
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.6e-28 Score=222.80 Aligned_cols=223 Identities=19% Similarity=0.245 Sum_probs=174.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 68999999999999888889999999999999999999888999999999999999999998 67766 7899999999
Q ss_pred cCCcCCC-CcchhccCCCCCceeeeecccccccC-------------------------ChhccCCC-------------
Q 045366 143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQL-------------------------PASIGNLS------------- 183 (289)
Q Consensus 143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------------~~~~~~~~------------- 183 (289)
++|.+.+ ..|..|+.+++|++|++++|.+.+.. |..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 9999985 34688999999999999988775321 11111111
Q ss_pred --------------------------------------------------------------------CCCEEEccCccC
Q 045366 184 --------------------------------------------------------------------TLQEINVNGNRL 195 (289)
Q Consensus 184 --------------------------------------------------------------------~L~~L~l~~n~~ 195 (289)
+|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 455555555655
Q ss_pred cccCCccc-----------------------------------------------------cCCCCCcEEeccCCcCccc
Q 045366 196 SGRIPSTR-----------------------------------------------------SHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 196 ~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~n~l~~~ 222 (289)
++.+|..+ ..+++|++|++++|.+++.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 55555443 5667888888888888875
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCch--hhhcCCCCCcEEEccccccccccCc-cccCCCCCCeEeCcCC
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPL--DIGVNLPNLRFFIISGNNLTGSLQD-SLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~N 289 (289)
.+. +..+++|++|++++|++++ ++. ..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred hhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 554 7888888888888888873 332 2234788888899988888875554 4788888999988876
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=203.02 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=188.8
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCC--CCccccCCCCCcEEEcc
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK--IPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~ 143 (289)
+.+++++++++.. |..+. +++++|++++|+++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4688888888754 44333 6899999999999865555689999999999999998722 25667788999999999
Q ss_pred CCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc-
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG- 221 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~- 221 (289)
+|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99998 677789999999999999999986554 578999999999999999998888899999999999999999987
Q ss_pred -cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 222 -MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 222 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 334489999999999999999855555554 8999999999999999877778999999999999987
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.7e-27 Score=199.16 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=186.1
Q ss_pred EeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcC
Q 045366 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 147 (289)
Q Consensus 68 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 147 (289)
++..+..+.. +|..+. +++++|++++|++++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4555555543 444443 5799999999999987777899999999999999999976777899999999999999999
Q ss_pred CCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCccc-CCccccCCCCCcEEeccCCcCcccCCC-
Q 045366 148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR-IPSTRSHVRNLISFNVGLNQFSGMFPP- 225 (289)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~- 225 (289)
.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|.+++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 977778899999999999999999977776799999999999999999863 588999999999999999999987664
Q ss_pred CCCCCCCC----EEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 226 INNISSLE----YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 226 ~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+..+++++ +|++++|.++ .++...+ ...+|++|++++|++++..+..+..+++|++|++++|
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred hhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 55555666 8999999998 5666666 5568999999999999777777899999999999987
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=217.38 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=74.4
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+.+..|..+..+++|++|++++|++++..|.+|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 56777777777777666667777777777777777777666777777777777777777776 45544 6677777777
Q ss_pred cCCcCCC-CcchhccCCCCCceeeeeccccc
Q 045366 143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
++|.+.+ .+|..|+.+++|++|++++|.+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc
Confidence 7777764 35666666666666666666543
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.2e-28 Score=219.17 Aligned_cols=213 Identities=17% Similarity=0.187 Sum_probs=188.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+.+..|..+..+++|+.|+|++|.+.+..| |..+++|++|++++|.+++ +| ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence 589999999999999888899999999999999999987655 8999999999999999983 33 2389999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc-CCCCCcEEeccCCcCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS-HVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~ 221 (289)
++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999865543 468999999999999988888899999999999999999988887776 78999999999999998
Q ss_pred cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.++ ...+++|++|++++|.+++ +|+.+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred ccc-cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 743 4468999999999999984 565655 8899999999999999 57888999999999999987
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.4e-28 Score=207.54 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=184.9
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 579999999999998888899999999999999999986554 8899999999999999983 33 3389999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc-cCCCCCcEEeccCCcCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~ 221 (289)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999854433 46889999999999998777788899999999999999997767666 478999999999999998
Q ss_pred cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
... ...+++|++|++++|+++ .+|+.+. .+++|++|++++|+++ .+|..+..+++|+.|++++|
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 184 VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred ccc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 743 345889999999999998 5666655 8899999999999999 67888999999999999987
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-26 Score=192.24 Aligned_cols=198 Identities=19% Similarity=0.277 Sum_probs=176.7
Q ss_pred CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366 88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (289)
..+.+++++++++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5789999999998 4676554 689999999999996666789999999999999999986666677899999999999
Q ss_pred cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366 168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL 246 (289)
Q Consensus 168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 246 (289)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|.++ .+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence 9999977777889999999999999999987788899999999999999999988776 889999999999999998 56
Q ss_pred chhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 247 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+...+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 6665558999999999999999777777999999999999987
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.7e-27 Score=220.10 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=161.1
Q ss_pred ccCCCCCcEEEccCCCCccc--CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcc-hhccCCC
Q 045366 83 VGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLL 159 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 159 (289)
+..+++|++|++++|.+++. .|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 44566677777777777654 3666777788888888888777 466777888888888888888876666 5778888
Q ss_pred CCceeeeecccccccCChhccCCCCCCEEEccCccCcc-cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEc
Q 045366 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFI 237 (289)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l 237 (289)
+|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+. +..+++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 88888888888887788888888888888888888876 3677888888888888888888887765 788888888888
Q ss_pred cCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC-CCCeEeCcCC
Q 045366 238 HKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT-NLHKLDINRN 289 (289)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~N 289 (289)
++|++++..|..+. .+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus 505 s~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 505 SHNNLLFLDSSHYN-QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CSSCCSCEEGGGTT-TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred CCCcCCCcCHHHcc-CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 88888855555554 7888888888888888 6666688886 5888888877
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.3e-27 Score=201.36 Aligned_cols=223 Identities=17% Similarity=0.183 Sum_probs=158.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+++..|..++.+++|++|++++|++. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 68999999999999888899999999999999999998 4565544 78999999999998655566888899999999
Q ss_pred cCCcCC--CCcchhccCC--------------------CCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366 143 SNNKLE--GEIPAEISNL--------------------LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP 200 (289)
Q Consensus 143 ~~n~~~--~~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (289)
++|.+. +..+..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 998875 2445555444 355556666666665555566677777777777777776555
Q ss_pred ccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcC------CCCCcEEEccccccc--cccC
Q 045366 201 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVN------LPNLRFFIISGNNLT--GSLQ 272 (289)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~~L~~L~Ls~n~l~--~~~~ 272 (289)
..+..+++|++|++++|.++.++..+..+++|++|++++|+++ .++...+.. .+.++.|++++|.+. +..|
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCc
Confidence 6677777777777777777755444666777777777777776 344333212 355677777777665 4555
Q ss_pred ccccCCCCCCeEeCcCC
Q 045366 273 DSLSNTTNLHKLDINRN 289 (289)
Q Consensus 273 ~~~~~~~~L~~L~l~~N 289 (289)
..|..+++|+.+++++|
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 66777777777777765
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=206.48 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=192.3
Q ss_pred CCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCC
Q 045366 47 SINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK 126 (289)
Q Consensus 47 ~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 126 (289)
....|.|.++ | +++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++.
T Consensus 26 ~~~~C~~~~~-c----------~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-C----------KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-E----------ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-e----------eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 3455666654 4 456677664 455444 5899999999999987777899999999999999999977
Q ss_pred CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCcc-CcccCCcccc
Q 045366 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNR-LSGRIPSTRS 204 (289)
Q Consensus 127 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~ 204 (289)
.|..+..+++|++|++++|.++...+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|. +.+..+..++
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 78889999999999999999996555669999999999999999995433 478999999999999994 7766678899
Q ss_pred CCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-------------
Q 045366 205 HVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS------------- 270 (289)
Q Consensus 205 ~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------- 270 (289)
.+++|++|++++|.+.+..+. +..+++|++|++++|.+. .++..++..+++|+.|++++|.+++.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 999999999999999988665 899999999999999996 67777665789999999999999863
Q ss_pred ------------------cCccccCCCCCCeEeCcCC
Q 045366 271 ------------------LQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 271 ------------------~~~~~~~~~~L~~L~l~~N 289 (289)
+|+.+.++++|++|++++|
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 3445788999999999987
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.1e-26 Score=215.22 Aligned_cols=109 Identities=23% Similarity=0.176 Sum_probs=82.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|||++|.|++..+..|..+++|++|+|++|++++..|++|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999998877788888999999999999888777778888888888888888887544456677777777777
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHL 171 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 171 (289)
++|++++..+..|+.+++|++|++++|.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 77766654444555566666666555544
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.1e-30 Score=216.78 Aligned_cols=219 Identities=18% Similarity=0.156 Sum_probs=183.9
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCc-ccCCcccc-------cccccccccccccccCCCCCccc--c
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR-AEIPHEVG-------NLFKLQNLTLTNNYFSGKIPTNL--S 132 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~ 132 (289)
.+++.+++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 5678888899988 567655543 889999999994 44666554 68999999999999998888876 8
Q ss_pred CCCCCcEEEccCCcCCCCcchhccCC-----CCCceeeeecccccccCChhccCCCCCCEEEccCccCccc--CCccc--
Q 045366 133 RCSNLVKFEASNNKLEGEIPAEISNL-----LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR--IPSTR-- 203 (289)
Q Consensus 133 ~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~-- 203 (289)
.+++|++|++++|.+.+. |..++.+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999999866 7777776 8999999999999988888999999999999999998754 23333
Q ss_pred cCCCCCcEEeccCCcCcccC---CC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC
Q 045366 204 SHVRNLISFNVGLNQFSGMF---PP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT 279 (289)
Q Consensus 204 ~~~~~L~~L~l~~n~l~~~~---~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 279 (289)
..+++|++|++++|.+++.. .. +..+++|++|++++|++++..|...+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 88999999999999998432 22 4577899999999999997665454546899999999999999 7787776 8
Q ss_pred CCCeEeCcCC
Q 045366 280 NLHKLDINRN 289 (289)
Q Consensus 280 ~L~~L~l~~N 289 (289)
+|++||+++|
T Consensus 275 ~L~~L~Ls~N 284 (312)
T 1wwl_A 275 KLSVLDLSYN 284 (312)
T ss_dssp EEEEEECCSS
T ss_pred CceEEECCCC
Confidence 9999999987
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=223.06 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=72.8
Q ss_pred CeeEEEeccCCCCCCcC-CccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCcc--ccCCCCCcE
Q 045366 63 QRVIGLDLRHQSIRGFL-SPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN--LSRCSNLVK 139 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~ 139 (289)
.+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.+.+..|.. +..+++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 56667777776544333 566677777777777777777666777777777777777777776544443 666777777
Q ss_pred EEccCCcCCCCcc-hhccCCCCCceeeeeccccccc
Q 045366 140 FEASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQ 174 (289)
Q Consensus 140 L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~ 174 (289)
|++++|.+.+..+ ..|+.+++|++|++++|.+.+.
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 7777776664433 4566667777777666665443
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.4e-27 Score=217.36 Aligned_cols=225 Identities=20% Similarity=0.214 Sum_probs=192.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999988889999999999999999999888999999999999999999999777999999999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCCc----EEeccCC
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI----SFNVGLN 217 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n 217 (289)
++|.+.+..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999987777889999999999999999986 5699999999999999999999988788887776654 8999999
Q ss_pred cCcccCCCCCCCCCCCEEEccCCcccccCchhh-----------------------------------------------
Q 045366 218 QFSGMFPPINNISSLEYIFIHKNRYHGSLPLDI----------------------------------------------- 250 (289)
Q Consensus 218 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----------------------------------------------- 250 (289)
.+++..+......+|++|++++|.+.+...+..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 999888774344489999999987642111110
Q ss_pred ---------hcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 251 ---------GVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 251 ---------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+..+++|+.|++++|.+. .+| .+..+++|+.|++++|
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRC 317 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESC
T ss_pred ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccc
Confidence 224577888888888876 555 6888888888888876
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.7e-26 Score=193.27 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=171.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.+++++++++.. |..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+++ ++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence 5688899999998854 54443 689999999999998788889999999999999999984 4433 68899999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999998 7788888999999999999999977778899999999999999999977777788999999999999999987
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++. +..+++|++|++++|+++ .+|..++ ..++|+.+++++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence 776 788899999999999998 8888887 7789999999999876
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=207.98 Aligned_cols=153 Identities=22% Similarity=0.354 Sum_probs=110.6
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCcccCCc-cccCCCC
Q 045366 132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRN 208 (289)
Q Consensus 132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~ 208 (289)
..+++|++|++++|.+.+..|..++.+++|++|++++|++.+ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 455667777777777766666667777777777777777764 3445667777777777777777653443 4666777
Q ss_pred CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc-ccCCCCCCeEeC
Q 045366 209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLHKLDI 286 (289)
Q Consensus 209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l 286 (289)
|++|++++|.+++..+. +. ++|++|++++|+++ .+|..++ .+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 77777777777654443 32 67888888888887 7887777 8888999999999888 45554 888889999998
Q ss_pred cCC
Q 045366 287 NRN 289 (289)
Q Consensus 287 ~~N 289 (289)
++|
T Consensus 476 ~~N 478 (520)
T 2z7x_B 476 HTN 478 (520)
T ss_dssp CSS
T ss_pred cCC
Confidence 887
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=6e-27 Score=222.45 Aligned_cols=200 Identities=18% Similarity=0.259 Sum_probs=158.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-Ccc-cCCccccccc-------ccccccccccccCCCCCc--cc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-LRA-EIPHEVGNLF-------KLQNLTLTNNYFSGKIPT--NL 131 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~~ 131 (289)
++++.|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 679999999999999999999999999999999998 887 7887776665 9999999999999 8888 89
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCC-CCEEEccCccCcccCCccccCCCC--
Q 045366 132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLST-LQEINVNGNRLSGRIPSTRSHVRN-- 208 (289)
Q Consensus 132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~-- 208 (289)
..+++|++|++++|.+. .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 99999999999999998 778 8999999999999999998 78888889998 999999999988 67777766543
Q ss_pred CcEEeccCCcCcccCCCCC------CCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 209 LISFNVGLNQFSGMFPPIN------NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 209 L~~L~l~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
|+.|++++|.+.+.++.+. ..++|++|++++|.++ .+|..++..+++|+.|+|++|+++
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 8888888887766544321 2235555555555555 455544444444555555554444
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=3.5e-26 Score=190.90 Aligned_cols=206 Identities=20% Similarity=0.296 Sum_probs=182.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.++++++.+... +.+..+++|++|++++|.+.+ ...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 6789999999988753 458889999999999999985 347889999999999999999777777899999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 99999977777789999999999999999977777789999999999999999977777789999999999999999988
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN 280 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 280 (289)
++. +..+++|++|++++|.+.+ .++.++.|+++.|.++|.+|..++.++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 876 8899999999999998863 3567899999999999999988776553
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.2e-26 Score=207.54 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=102.2
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--CChhccCCCCCCEEEccCccCcccCC-ccccCCCC
Q 045366 132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGNRLSGRIP-STRSHVRN 208 (289)
Q Consensus 132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 208 (289)
..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. .|..+..+++|++|++++|.+++.+| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3445566666666666655566666666666666666666542 23445666666666666666665233 34556666
Q ss_pred CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc-ccCCCCCCeEeC
Q 045366 209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLHKLDI 286 (289)
Q Consensus 209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l 286 (289)
|++|++++|.+++..+. +. ++|++|++++|+++ .+|..++ .+++|++|++++|+++ .+|.. +..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 66666666666554333 22 57888888888887 7887777 8888899999998888 55554 888888999988
Q ss_pred cCC
Q 045366 287 NRN 289 (289)
Q Consensus 287 ~~N 289 (289)
++|
T Consensus 505 ~~N 507 (562)
T 3a79_B 505 HDN 507 (562)
T ss_dssp CSC
T ss_pred cCC
Confidence 887
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=209.84 Aligned_cols=177 Identities=21% Similarity=0.257 Sum_probs=150.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|++++|.+++..+..|..+++|++|++++|++.+..+.+|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57899999999999888889999999999999999999888888999999999999999998777788999999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCC----cEEeccCC
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL----ISFNVGLN 217 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n 217 (289)
++|.+....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999986555579999999999999999986 468899999999999999999987777778877777 78888888
Q ss_pred cCcccCCC-CCCCCCCCEEEccCC
Q 045366 218 QFSGMFPP-INNISSLEYIFIHKN 240 (289)
Q Consensus 218 ~l~~~~~~-~~~~~~L~~L~l~~n 240 (289)
.+.+..+. +.. .+|++|++++|
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~l~~n 210 (570)
T 2z63_A 188 PMNFIQPGAFKE-IRLHKLTLRNN 210 (570)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESC
T ss_pred CceecCHHHhcc-CcceeEecccc
Confidence 88766554 332 24555555444
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=7.1e-26 Score=185.39 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=168.1
Q ss_pred CCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCCCCCcEEEccC-CcCCCCcchhccCCCCCcee
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRCSNLVKFEASN-NKLEGEIPAEISNLLKFQIL 164 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L 164 (289)
+++++|++++|++++..+.+|.++++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998777789999999999999997 8755666889999999999998 99986666789999999999
Q ss_pred eeecccccccCChhccCCCCCC---EEEccCc-cCcccCCccccCCCCCc-EEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366 165 NIAKNHLKGQLPASIGNLSTLQ---EINVNGN-RLSGRIPSTRSHVRNLI-SFNVGLNQFSGMFPP-INNISSLEYIFIH 238 (289)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~-~~~~~~L~~L~l~ 238 (289)
++++|.+.+ +|. +..+++|+ +|++++| .+++..+..+..+++|+ ++++++|.++.+++. +.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88888888 9999999 89877777899999999 999999999977665 544 899999999
Q ss_pred CCc-ccccCchhhhcCC-CCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 239 KNR-YHGSLPLDIGVNL-PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 239 ~n~-l~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+|+ ++ .++...+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 995 87 6666666678 99999999999998 45543 6789999998875
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.2e-25 Score=191.23 Aligned_cols=213 Identities=26% Similarity=0.386 Sum_probs=134.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC-----------------
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG----------------- 125 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 125 (289)
++++.+++++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+
T Consensus 110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence 567777777777665322 556666666666666433222 224555555555555555442
Q ss_pred ----CCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366 126 ----KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS 201 (289)
Q Consensus 126 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (289)
.++. +..+++|+++++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + .
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~ 259 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-N 259 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-G
T ss_pred Cccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-h
Confidence 2221 3444455555555554442222 5566677777777777664322 6677777777777777764 2 4
Q ss_pred cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCC
Q 045366 202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNL 281 (289)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L 281 (289)
.+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..| +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhcc
Confidence 567777888888888877765 3466777888888888887754444444 78888888888888875555 7778888
Q ss_pred CeEeCcCC
Q 045366 282 HKLDINRN 289 (289)
Q Consensus 282 ~~L~l~~N 289 (289)
++|++++|
T Consensus 336 ~~L~l~~N 343 (347)
T 4fmz_A 336 DSADFANQ 343 (347)
T ss_dssp SEESSSCC
T ss_pred ceeehhhh
Confidence 88888876
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.2e-25 Score=187.71 Aligned_cols=178 Identities=20% Similarity=0.194 Sum_probs=119.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 4566777777777666666677777777777777777643322 56667777777777776 66666666777777777
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|++++..+..|..+++|++|++++|++.+..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.++.+
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 77777655556677777777777777777655555566677777777777777654445566677777777777777755
Q ss_pred CCCCCCCCCCCEEEccCCccc
Q 045366 223 FPPINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~ 243 (289)
+..+....+|+.+++++|.+.
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCeEEeCCCCcc
Confidence 555555566777777777654
No 61
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=2.3e-25 Score=183.78 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=169.1
Q ss_pred CCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC
Q 045366 49 NLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP 128 (289)
Q Consensus 49 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 128 (289)
.|+.|.|..|. ...+.++++++.++. +|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 45678899996 345679999999885 455454 689999999999998888889999999999999999998888
Q ss_pred ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCC
Q 045366 129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN 208 (289)
Q Consensus 129 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 208 (289)
..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999777788999999999999999999777777899999999999999999777778999999
Q ss_pred CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCccccc
Q 045366 209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGS 245 (289)
Q Consensus 209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~ 245 (289)
|++|++++|.+++.++. +..+++|++|++++|.+...
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999988875 88999999999999999754
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=206.58 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=166.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcc--------------------cccccccccccccccc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHE--------------------VGNLFKLQNLTLTNNY 122 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------~~~l~~L~~L~L~~n~ 122 (289)
++++.++++++.+.+ +|+.+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.
T Consensus 282 ~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 456677777776653 45555555 6666666666554 23321 0456677777777777
Q ss_pred cCCCC--CccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccC
Q 045366 123 FSGKI--PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRI 199 (289)
Q Consensus 123 l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~ 199 (289)
+.+.. |..+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 66332 4556677778888888877763 33347788888888888888876555 46788899999999999988878
Q ss_pred CccccCCCCCcEEeccCCcCc-ccCC-CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 200 PSTRSHVRNLISFNVGLNQFS-GMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 200 ~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
|..+..+++|++|++++|.+. +..+ .+..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+.+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHhhc
Confidence 888889999999999999987 3344 488889999999999999865565555 8899999999999999887888899
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|+.|++++|
T Consensus 517 l~~L~~L~l~~N 528 (570)
T 2z63_A 517 LTSLQKIWLHTN 528 (570)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCcEEEecCC
Confidence 999999999987
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.3e-25 Score=188.99 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=164.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+... +.+..+++|++|++++|.+.+. +. +..+++|++|++++|...... ..+..+++|++|++
T Consensus 88 ~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV 162 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred CcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence 7899999999998864 4689999999999999999854 33 889999999999999765343 44778888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCC--------------------hhccCCCCCCEEEccCccCcccCCcc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP--------------------ASIGNLSTLQEINVNGNRLSGRIPST 202 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~~~L~~L~l~~n~~~~~~~~~ 202 (289)
++|.+....+ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--
Confidence 8887764332 6677777777777776653221 115566777777777777764332
Q ss_pred ccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282 (289)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 282 (289)
+..+++|++|++++|.+++. +.+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+++..+..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-IS-V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-Ch-h-hcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 77778888888888887764 346777888888998888873 43 3 33788999999999999888888889999999
Q ss_pred eEeCcCC
Q 045366 283 KLDINRN 289 (289)
Q Consensus 283 ~L~l~~N 289 (289)
+|++++|
T Consensus 315 ~L~L~~n 321 (347)
T 4fmz_A 315 TLFLSQN 321 (347)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 9999887
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.3e-25 Score=203.52 Aligned_cols=225 Identities=16% Similarity=0.197 Sum_probs=186.4
Q ss_pred CCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCc
Q 045366 50 LCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT 129 (289)
Q Consensus 50 ~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 129 (289)
.|.|.++ | |+++++++. +|+.+. ++|++|++++|++++..|.+|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4777766 6 344566654 455443 7899999999999988889999999999999999999987888
Q ss_pred cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccC-CccccCCC
Q 045366 130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRI-PSTRSHVR 207 (289)
Q Consensus 130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~ 207 (289)
.|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+ +..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997777789999999999999999986 35678999999999999999844344 46899999
Q ss_pred CCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc--C-ccccCCCCCCe
Q 045366 208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL--Q-DSLSNTTNLHK 283 (289)
Q Consensus 208 ~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~-~~~~~~~~L~~ 283 (289)
+|++|++++|.+++..+. +..+++|++|++++|.+. .++..++..+++|++|++++|++++.. + .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 999999999999987766 888999999999999886 667766667899999999999998642 1 22344566666
Q ss_pred EeCcCC
Q 045366 284 LDINRN 289 (289)
Q Consensus 284 L~l~~N 289 (289)
|++++|
T Consensus 228 L~l~~n 233 (549)
T 2z81_A 228 LAFRGS 233 (549)
T ss_dssp EEEESC
T ss_pred eecccc
Confidence 666554
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=3.7e-25 Score=181.11 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=171.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-CcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-LRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKF 140 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 140 (289)
..++.+++++|.+++..+..+..+++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999998877789999999999999997 8877777899999999999998 99986666789999999999
Q ss_pred EccCCcCCCCcchhccCCCCCc---eeeeecc-cccccCChhccCCCCCC-EEEccCccCcccCCccccCCCCCcEEecc
Q 045366 141 EASNNKLEGEIPAEISNLLKFQ---ILNIAKN-HLKGQLPASIGNLSTLQ-EINVNGNRLSGRIPSTRSHVRNLISFNVG 215 (289)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 215 (289)
++++|.+.+ +|. |..+++|+ +|++++| .+.+..+..|..+++|+ ++++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88888888 9999999 89877677799999999 9999999998444444544 899999999
Q ss_pred CCc-CcccCCC-CCCC-CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366 216 LNQ-FSGMFPP-INNI-SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN 266 (289)
Q Consensus 216 ~n~-l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 266 (289)
+|. +++..+. +..+ ++|++|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 995 9988766 8888 99999999999998 67765 57899999998863
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.8e-25 Score=183.46 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=168.3
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
..+++..+.+... .....+++|+.|++++|.+.. ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence 3445555555443 235567899999999999873 3458889999999999999984 3 47889999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 225 (289)
.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 99977777789999999999999999977777789999999999999999977777789999999999999999988776
Q ss_pred -CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccC
Q 045366 226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 272 (289)
Q Consensus 226 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 272 (289)
+..+++|++|++++|++++ +++..+..+++|+.|++++|.+.+..|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCc
Confidence 7889999999999999985 555555589999999999998875544
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.2e-24 Score=193.31 Aligned_cols=209 Identities=24% Similarity=0.438 Sum_probs=166.4
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+.+. +.+..+++|++|++++|.+.+..| +..+++|++|++++|.+.+ + ..+..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence 5678888888887654 347778888888888888875544 6778888888888888873 3 35778888999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 9888875544 7788889999999988885433 7788899999999998885433 77888999999999988876
Q ss_pred CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+ +..+++|++|++++|++++. +.+. .+++|+.|++++|++++..| +..+++|++|++++|
T Consensus 325 ~~-~~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 SP-VSSLTKLQRLFFYNNKVSDV--SSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred hh-hccCccCCEeECCCCccCCc--hhhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 54 67788999999999988743 3443 78999999999999987766 888999999999876
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-26 Score=196.17 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=180.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
...+..+++.+.+.......+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 456667888887766666666777899999999999998777889999999999999999985444 889999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+ ++ ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 9999873 22 448999999999999865443 468899999999999987788899999999999999999987
Q ss_pred CCC-C-CCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 223 FPP-I-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 223 ~~~-~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+. + ..+++|++|++++|.+++ ++... .+++|++|++++|++++ +|..+..+++|++|++++|
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYD-VKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCE-EECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred cHHHHhhccCcCCEEECCCCcCcc-ccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCC
Confidence 655 4 478999999999999984 44332 48999999999999994 5556999999999999987
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=188.74 Aligned_cols=219 Identities=15% Similarity=0.161 Sum_probs=174.0
Q ss_pred eeEEEeccCCCCCCc-CCc--cccCCCCCcEEEccCCCCcccCCccc--ccccccccccccccccCCCCC----ccccCC
Q 045366 64 RVIGLDLRHQSIRGF-LSP--FVGYLSFLRSINLVNNSLRAEIPHEV--GNLFKLQNLTLTNNYFSGKIP----TNLSRC 134 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 134 (289)
+++.+++.+..+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 345556555554321 000 11224669999999999998888888 889999999999999986555 334578
Q ss_pred CCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--C--ChhccCCCCCCEEEccCccCcccCCc----cccCC
Q 045366 135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--L--PASIGNLSTLQEINVNGNRLSGRIPS----TRSHV 206 (289)
Q Consensus 135 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~ 206 (289)
++|++|++++|.+.+..+..|+.+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988888999999999999999997642 2 2234688999999999999973 332 35678
Q ss_pred CCCcEEeccCCcCcccCCC-CCCC---CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366 207 RNLISFNVGLNQFSGMFPP-INNI---SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282 (289)
Q Consensus 207 ~~L~~L~l~~n~l~~~~~~-~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 282 (289)
++|++|++++|.+.+..+. +..+ ++|++|++++|+++ .+|..++ ++|++|++++|++++. |. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 9999999999999988543 5554 79999999999998 7887654 7999999999999954 43 78899999
Q ss_pred eEeCcCC
Q 045366 283 KLDINRN 289 (289)
Q Consensus 283 ~L~l~~N 289 (289)
.|++++|
T Consensus 298 ~L~L~~N 304 (310)
T 4glp_A 298 NLTLDGN 304 (310)
T ss_dssp CEECSST
T ss_pred EEECcCC
Confidence 9999988
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.2e-24 Score=190.23 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=97.4
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.++++++.+++. | .++.+++|++|++++|++++. | +..+++|++|++++|.+++ ++ +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 4455555555555543 2 355555555555555555542 2 4555555555555555553 22 445555555555
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccc---------------------cCChhccCCCCCCEEEccCccCcccCCc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG---------------------QLPASIGNLSTLQEINVNGNRLSGRIPS 201 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (289)
++|.+++ ++ ++.+++|++|++++|.+.+ .+ .+..+++|++|++++|.+++ +|
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec-
Confidence 5555553 22 4555555555555555543 22 23444555555555555553 22
Q ss_pred cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc
Q 045366 202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS 270 (289)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 270 (289)
++.+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +. .+++|+.|++++|++++.
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC
T ss_pred -cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCc
Confidence 44555555555555555543 24555566666666666653 44 22 556666666666666543
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.8e-24 Score=175.30 Aligned_cols=179 Identities=17% Similarity=0.250 Sum_probs=156.6
Q ss_pred CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366 88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (289)
..++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678999999998 5666554 689999999999998778889999999999999999998888889999999999999
Q ss_pred cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366 168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL 246 (289)
Q Consensus 168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 246 (289)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|+++ .+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence 9999977777889999999999999999976677788999999999999999988875 888999999999999998 55
Q ss_pred chhhhcCCCCCcEEEccccccccc
Q 045366 247 PLDIGVNLPNLRFFIISGNNLTGS 270 (289)
Q Consensus 247 ~~~~~~~~~~L~~L~Ls~n~l~~~ 270 (289)
++..+..+++|+.|++++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555555889999999999999855
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=187.05 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=169.2
Q ss_pred CeeEEEeccCCCCCCcCCccc--cCCCCCcEEEccCCCCcccCC----cccccccccccccccccccCCCCCccccCCCC
Q 045366 63 QRVIGLDLRHQSIRGFLSPFV--GYLSFLRSINLVNNSLRAEIP----HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSN 136 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 136 (289)
.+++.+++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 359999999999999988888 899999999999999987554 34557999999999999999888889999999
Q ss_pred CcEEEccCCcCCCC--cc--hhccCCCCCceeeeecccccccCCh----hccCCCCCCEEEccCccCcccCCccccCC--
Q 045366 137 LVKFEASNNKLEGE--IP--AEISNLLKFQILNIAKNHLKGQLPA----SIGNLSTLQEINVNGNRLSGRIPSTRSHV-- 206 (289)
Q Consensus 137 L~~L~l~~n~~~~~--~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-- 206 (289)
|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .++.+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998642 22 234689999999999999973 232 35788999999999999998778777766
Q ss_pred -CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 207 -RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 207 -~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
++|++|++++|.++.++..+. ++|++|++++|++++ +|. +..+++|+.|++++|.+++
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence 699999999999997655453 799999999999984 443 2378999999999999874
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=6.8e-24 Score=190.15 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=114.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++. +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEEC
Confidence 567777777777765433 6666777777777776664333 6666666666666666653 222 555555555555
Q ss_pred cCCcCCCCcc-------------------hhccCCCCCceeeeeccccc----------------------ccCChhccC
Q 045366 143 SNNKLEGEIP-------------------AEISNLLKFQILNIAKNHLK----------------------GQLPASIGN 181 (289)
Q Consensus 143 ~~n~~~~~~~-------------------~~~~~l~~L~~L~l~~n~~~----------------------~~~~~~~~~ 181 (289)
++|.+.+... ..+..+++|++|++++|.+. +..+ ++.
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 219 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 219 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccc
Confidence 5555442110 11333344444444444433 2211 333
Q ss_pred CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEE
Q 045366 182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261 (289)
Q Consensus 182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 261 (289)
+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++. + ..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-ISP-L-AGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGG-G-TTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-ccc-c-cCCCccCeEE
Confidence 44444444444444321 234455555555555555554433 4555666666666666653 332 2 2566677777
Q ss_pred ccccccccccCccccCCCCCCeEeCcCC
Q 045366 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 262 Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+++|++++..+ +..+++|+.|++++|
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCC
Confidence 77776664333 666777777777665
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-25 Score=199.62 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=166.4
Q ss_pred ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366 83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (289)
...+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+. + ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcC
Confidence 3345589999999999998888899999999999999999986554 88999999999999998733 3 338999
Q ss_pred eeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CC-CCCCCCEEEccCC
Q 045366 163 ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-IN-NISSLEYIFIHKN 240 (289)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n 240 (289)
+|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+. +. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999965543 468999999999999988888999999999999999999987665 54 7899999999999
Q ss_pred cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 241 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+++. +.. . .+++|+.|+|++|.+++ +|..+..+++|+.|++++|
T Consensus 180 ~l~~~-~~~-~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 180 FIYDV-KGQ-V-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCCEE-ECC-C-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred ccccc-ccc-c-cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence 99854 432 2 58999999999999995 4555999999999999987
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=6.5e-24 Score=180.24 Aligned_cols=191 Identities=17% Similarity=0.340 Sum_probs=162.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.++++++.+... + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 6789999999998763 3 58889999999999999985443 8899999999999999984 44 6889999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 9999985 34 38899999999999999985433 88999999999999999853 33 88999999999999999876
Q ss_pred CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
.+ +..+++|++|++++|.+++ +++ + ..+++|+.|++++|.+++
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISD-VSP-L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCB-CGG-G-TTCTTCCEEEEEEEEEEC
T ss_pred hh-hcCCCCCCEEEccCCccCc-ccc-c-cCCCCCCEEEccCCeeec
Confidence 54 7788999999999999984 442 3 489999999999999984
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.3e-23 Score=185.04 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=145.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++++|.+++ +| +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 5566677777766653 2 56666666666666666643 2 5566666666666666653 32 455555555555
Q ss_pred cCCcCCC---------------------CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366 143 SNNKLEG---------------------EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS 201 (289)
Q Consensus 143 ~~n~~~~---------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (289)
++|.+++ .+ .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.+++.
T Consensus 135 ~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 135 ARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp TTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---
T ss_pred CCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---
Confidence 5555543 22 35677888899999998886 44 78899999999999999864
Q ss_pred cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCC-------CCcEEEccccccccccCcc
Q 045366 202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLP-------NLRFFIISGNNLTGSLQDS 274 (289)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------~L~~L~Ls~n~l~~~~~~~ 274 (289)
.++.+++|++|++++|.+++++ +..+++|++|++++|++++ +|...+..+. +|+.|++++|.+.+.+|
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 3888999999999999999853 7888999999999999985 4433221222 44556666666555565
Q ss_pred ccCCCCCCeEeCcCC
Q 045366 275 LSNTTNLHKLDINRN 289 (289)
Q Consensus 275 ~~~~~~L~~L~l~~N 289 (289)
++.+++|+.|++++|
T Consensus 282 ~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 282 AEGCRKIKELDVTHN 296 (457)
T ss_dssp CTTCTTCCCCCCTTC
T ss_pred ccccccCCEEECCCC
Confidence 578899999999987
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=2.6e-26 Score=197.19 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=156.8
Q ss_pred CcccceeCCCCCeeEEEeccCCCCCCcCCccccCC--CCCcEEEccCCCCcccCCcccccccccccccccccccCCC-CC
Q 045366 52 QWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYL--SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK-IP 128 (289)
Q Consensus 52 ~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 128 (289)
.|.++.+++ ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++
T Consensus 38 ~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 38 RWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 477776653 34667777777665 3445555 6778888888877765544 45677888888888777644 66
Q ss_pred ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc-ccccc-CChhccCCCCCCEEEccCc-cCccc-CCcccc
Q 045366 129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN-HLKGQ-LPASIGNLSTLQEINVNGN-RLSGR-IPSTRS 204 (289)
Q Consensus 129 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~ 204 (289)
..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 66777778888888888777666777777888888888877 45542 4555677778888888887 67643 455566
Q ss_pred CCC-CCcEEeccCC--cCc-ccCC-CCCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccc-cccccCccccC
Q 045366 205 HVR-NLISFNVGLN--QFS-GMFP-PINNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLSN 277 (289)
Q Consensus 205 ~~~-~L~~L~l~~n--~l~-~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~ 277 (289)
.++ +|++|++++| .++ +..+ .+..+++|++|++++|. +++..+..+. .+++|++|++++|. +.......+++
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 777 8888888877 343 2222 25566778888888887 5555555554 67788888888773 33333335677
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 788888887765
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=4.8e-26 Score=199.32 Aligned_cols=227 Identities=17% Similarity=0.190 Sum_probs=179.5
Q ss_pred CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCC---cccCCccc-------ccccccccccccccccCC---
Q 045366 63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSL---RAEIPHEV-------GNLFKLQNLTLTNNYFSG--- 125 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~~n~l~~--- 125 (289)
++++.|++++|.+... ++..+..+++|+.|++++|.+ .+.+|..+ ..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 6789999999998865 344577899999999999644 44555544 678999999999999986
Q ss_pred -CCCccccCCCCCcEEEccCCcCCCCcchhc----cCC---------CCCceeeeecccccc-cCC---hhccCCCCCCE
Q 045366 126 -KIPTNLSRCSNLVKFEASNNKLEGEIPAEI----SNL---------LKFQILNIAKNHLKG-QLP---ASIGNLSTLQE 187 (289)
Q Consensus 126 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~L~~ 187 (289)
.+|..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|++.. ..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 366778889999999999999864333333 334 899999999999973 344 46778899999
Q ss_pred EEccCccCcc-----cCCccccCCCCCcEEeccCCcCc----ccCC-CCCCCCCCCEEEccCCccccc----Cchhhh-c
Q 045366 188 INVNGNRLSG-----RIPSTRSHVRNLISFNVGLNQFS----GMFP-PINNISSLEYIFIHKNRYHGS----LPLDIG-V 252 (289)
Q Consensus 188 L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~-~~~~~~~L~~L~l~~n~l~~~----~~~~~~-~ 252 (289)
|++++|.++. ..+..+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999873 23447888999999999999995 3333 377889999999999999754 344432 1
Q ss_pred CCCCCcEEEcccccccc----ccCccc-cCCCCCCeEeCcCC
Q 045366 253 NLPNLRFFIISGNNLTG----SLQDSL-SNTTNLHKLDINRN 289 (289)
Q Consensus 253 ~~~~L~~L~Ls~n~l~~----~~~~~~-~~~~~L~~L~l~~N 289 (289)
.+++|++|+|++|.+++ .+|..+ .++++|++|++++|
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 38999999999999997 477777 67899999999987
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.91 E-value=5.1e-24 Score=194.01 Aligned_cols=209 Identities=21% Similarity=0.318 Sum_probs=174.7
Q ss_pred cCCCCCCCCCC-----Ccccc-eeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccc
Q 045366 41 MNSWNNSINLC-----QWTGV-TCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQ 114 (289)
Q Consensus 41 ~~~w~~~~~~c-----~~~~~-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 114 (289)
+.+|.....+| .|.++ .|.. .+++.|+++++.+++ +|..+. ++|+.|++++|+++ .+| ..+++|+
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~ 103 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE 103 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence 45677666777 57777 6753 579999999999987 666553 88999999999998 567 4578999
Q ss_pred cccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc
Q 045366 115 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR 194 (289)
Q Consensus 115 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 194 (289)
+|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.
T Consensus 104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 99999999995 777 655 99999999999986 665 68999999999999996 565 57899999999999
Q ss_pred CcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCC-------CEEEccCCcccccCchhhhcCCCCCcEEEcccccc
Q 045366 195 LSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL-------EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL 267 (289)
Q Consensus 195 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 267 (289)
+++ +|. +. ++|+.|++++|.++.++. +.. +| ++|++++|+++ .+|..++ .+++|+.|+|++|.+
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPL 242 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcC
Confidence 996 666 66 899999999999997665 543 77 99999999998 7999888 699999999999999
Q ss_pred ccccCccccCCC
Q 045366 268 TGSLQDSLSNTT 279 (289)
Q Consensus 268 ~~~~~~~~~~~~ 279 (289)
++.+|..+..++
T Consensus 243 ~~~~p~~l~~l~ 254 (571)
T 3cvr_A 243 SSRIRESLSQQT 254 (571)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHHhh
Confidence 998888776543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.1e-23 Score=176.08 Aligned_cols=189 Identities=22% Similarity=0.370 Sum_probs=108.5
Q ss_pred CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL 164 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (289)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 34556666666666653 33 4556666666666666665 3333 5566666666666666653 2 245566666666
Q ss_pred eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccc
Q 045366 165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG 244 (289)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 244 (289)
++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-
Confidence 6666666532 2 25666666666666666653322 5566666666666666655433 555666666666666665
Q ss_pred cCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 245 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.++. + ..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 187 ~~~~-l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 DISP-L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCGG-G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred cChh-h-cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 2332 2 256666666666666663332 566666666666554
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=5.1e-23 Score=189.49 Aligned_cols=201 Identities=25% Similarity=0.328 Sum_probs=117.5
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.++. +|. .+++|++|++++|+++. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence 345555555555553 232 34556666666666552 333 3455555555555555 2332 2334444444
Q ss_pred cCCcCCCCcchhccCCCCCceeeeeccccccc--CChhcc--------------CCCCCCEEEccCccCcccCCcccc--
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASIG--------------NLSTLQEINVNGNRLSGRIPSTRS-- 204 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~--------------~~~~L~~L~l~~n~~~~~~~~~~~-- 204 (289)
++|.+.. +|.. +++|++|++++|.+.+. .+..+. .+++|+.|++++|.+++ +|..+.
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L 203 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL 203 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence 4444432 2221 24555555555555431 111111 12556666666666553 222111
Q ss_pred ---------------CCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 205 ---------------HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 205 ---------------~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
.+++|++|++++|.+++++ ..+++|++|++++|+++ .+|. .+++|+.|++++|+++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-
Confidence 1256777777777777644 34467888888888887 5665 4688999999999999
Q ss_pred ccCccccCCCCCCeEeCcCC
Q 045366 270 SLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~N 289 (289)
.+|..+.++++|+.|++++|
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSC
T ss_pred cCCHHHhhccccCEEEecCC
Confidence 78888999999999999987
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=5.4e-23 Score=177.67 Aligned_cols=233 Identities=19% Similarity=0.146 Sum_probs=167.7
Q ss_pred CCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-Cccccccccccc-cccc
Q 045366 51 CQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQN-LTLT 119 (289)
Q Consensus 51 c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L~ 119 (289)
|.+..+.|+.. ..++++|++++|.|+...+..|..+++|++|+|++|++.+.+ +.+|.+++++++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 55666677532 146788888888888766667888888888888888876544 456778877665 5556
Q ss_pred ccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec-ccccccCChhccCCC-CCCEEEccCccCcc
Q 045366 120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK-NHLKGQLPASIGNLS-TLQEINVNGNRLSG 197 (289)
Q Consensus 120 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~ 197 (289)
+|++....|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6788766677788888888888888888766556666667777888865 455544444555554 57888899988884
Q ss_pred cCCccccCCCCCcEEeccC-CcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc
Q 045366 198 RIPSTRSHVRNLISFNVGL-NQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275 (289)
Q Consensus 198 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 275 (289)
++......++|+++++.+ |.++.+++. +..+++|++|++++|+++ .+|... +.+|+.|.+.++.-.+.+|. +
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCCC-T
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCCC-c
Confidence 444444556788888864 666666554 788889999999999887 777653 46777777766644446674 7
Q ss_pred cCCCCCCeEeCcCC
Q 045366 276 SNTTNLHKLDINRN 289 (289)
Q Consensus 276 ~~~~~L~~L~l~~N 289 (289)
.++++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88889999988753
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.3e-25 Score=193.41 Aligned_cols=227 Identities=18% Similarity=0.208 Sum_probs=174.4
Q ss_pred CeeEEEeccCCCCCCcCC----ccccCCC-CCcEEEccCCCCcccCCcccccc-----cccccccccccccCCCCCcc--
Q 045366 63 QRVIGLDLRHQSIRGFLS----PFVGYLS-FLRSINLVNNSLRAEIPHEVGNL-----FKLQNLTLTNNYFSGKIPTN-- 130 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~-- 130 (289)
.+++.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 458999999999987766 6778888 89999999999987777777765 89999999999998655553
Q ss_pred --ccCC-CCCcEEEccCCcCCCCcchhc----cC-CCCCceeeeecccccccC----ChhccCCC-CCCEEEccCccCcc
Q 045366 131 --LSRC-SNLVKFEASNNKLEGEIPAEI----SN-LLKFQILNIAKNHLKGQL----PASIGNLS-TLQEINVNGNRLSG 197 (289)
Q Consensus 131 --~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~~~~~~-~L~~L~l~~n~~~~ 197 (289)
+..+ ++|++|++++|.++...+..+ .. .++|++|++++|.+.+.. +..+...+ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4444 799999999999986555444 34 359999999999998543 34445665 99999999999986
Q ss_pred cCCccc----cCC-CCCcEEeccCCcCccc-----CCCCCC-CCCCCEEEccCCcccccCch---hhhcCCCCCcEEEcc
Q 045366 198 RIPSTR----SHV-RNLISFNVGLNQFSGM-----FPPINN-ISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIIS 263 (289)
Q Consensus 198 ~~~~~~----~~~-~~L~~L~l~~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls 263 (289)
..+..+ ... ++|++|++++|.+.+. ...+.. .++|++|++++|.+.+..+. ..+..+++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 655433 344 5999999999999862 222333 45899999999999854442 233467899999999
Q ss_pred ccccccc-------cCccccCCCCCCeEeCcCC
Q 045366 264 GNNLTGS-------LQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 264 ~n~l~~~-------~~~~~~~~~~L~~L~l~~N 289 (289)
+|.+.+. ++..+..+++|+.||+++|
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 9985432 3345778889999999987
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.9e-23 Score=163.13 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=128.3
Q ss_pred CCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeee
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNI 166 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (289)
+++++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 57899999999998766667888999999999999988655566788899999999999888666666788888999999
Q ss_pred ecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccC
Q 045366 167 AKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246 (289)
Q Consensus 167 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 246 (289)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .++++++|++..|+++|.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence 8888886666667888888888888888886666667888888888888887664 3456778888888888888
Q ss_pred chhhh
Q 045366 247 PLDIG 251 (289)
Q Consensus 247 ~~~~~ 251 (289)
|.++.
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 86655
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.7e-25 Score=190.90 Aligned_cols=223 Identities=16% Similarity=0.168 Sum_probs=177.0
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC----ccccccc-ccccccccccccCCCCCccccCC-----CC
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP----HEVGNLF-KLQNLTLTNNYFSGKIPTNLSRC-----SN 136 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 136 (289)
..+++.+.+++.+|..+...++|++|++++|.+.+..+ .+|.+++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788899999888888877889999999999987666 6788888 99999999999997667666654 89
Q ss_pred CcEEEccCCcCCCCcchhc----cCC-CCCceeeeecccccccCChhc----cC-CCCCCEEEccCccCcccC----Ccc
Q 045366 137 LVKFEASNNKLEGEIPAEI----SNL-LKFQILNIAKNHLKGQLPASI----GN-LSTLQEINVNGNRLSGRI----PST 202 (289)
Q Consensus 137 L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~----~~~ 202 (289)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999986666544 445 899999999999987655443 34 369999999999998543 334
Q ss_pred ccCCC-CCcEEeccCCcCcccCCC-----CCCC-CCCCEEEccCCccccc----CchhhhcCCCCCcEEEcccccccccc
Q 045366 203 RSHVR-NLISFNVGLNQFSGMFPP-----INNI-SSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNNLTGSL 271 (289)
Q Consensus 203 ~~~~~-~L~~L~l~~n~l~~~~~~-----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~ 271 (289)
+...+ +|++|++++|.+++..+. +... ++|++|++++|.+.+. ++..+....++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 999999999999866542 3344 5999999999999853 44445433569999999999998654
Q ss_pred C----ccccCCCCCCeEeCcCC
Q 045366 272 Q----DSLSNTTNLHKLDINRN 289 (289)
Q Consensus 272 ~----~~~~~~~~L~~L~l~~N 289 (289)
+ ..+..+++|+.|++++|
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHhcCCCccEEEeccC
Confidence 4 44578899999999875
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.5e-22 Score=160.81 Aligned_cols=163 Identities=20% Similarity=0.292 Sum_probs=145.0
Q ss_pred ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 189 (289)
.+++++|++++|.+++..+..+..+++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35899999999999966666788999999999999999976667789999999999999999977667789999999999
Q ss_pred ccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
+++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|.+.+ .++.++.|+++.|+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCC
Confidence 999999977777789999999999999999988776 8889999999999998763 4678999999999999
Q ss_pred cccCccccCCCC
Q 045366 269 GSLQDSLSNTTN 280 (289)
Q Consensus 269 ~~~~~~~~~~~~ 280 (289)
|.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 999988877664
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.7e-22 Score=174.59 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=173.7
Q ss_pred ceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC-ccccCC
Q 045366 56 VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP-TNLSRC 134 (289)
Q Consensus 56 ~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 134 (289)
..|.. +.++.++++++. +|..+. +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.++
T Consensus 7 C~C~~-----~~v~C~~~~Lt~-iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 7 CHCSN-----RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp SEEET-----TEEEEESTTCCS-CCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred cEeeC-----CEEEecCCCCCc-cCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 56653 357888888885 465553 689999999999997666789999999999999999875555 567889
Q ss_pred CCCcE-EEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccC-ccCcccCCccccCCC-CCcE
Q 045366 135 SNLVK-FEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG-NRLSGRIPSTRSHVR-NLIS 211 (289)
Q Consensus 135 ~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~ 211 (289)
+++++ +.+..|++....+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..++ .++.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 88876 56677899877788999999999999999999976666667777888899976 456655555666654 6899
Q ss_pred EeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEe
Q 045366 212 FNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD 285 (289)
Q Consensus 212 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 285 (289)
|++++|.++.+.+......++++|++.+++..+.+|...|..+++|++||+++|+++...+..+.++++|+.++
T Consensus 159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp EECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred hccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 99999999988777555678999999864433489988877999999999999999954444555554444433
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=5.5e-23 Score=183.45 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=92.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccc-------------------------------
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLF------------------------------- 111 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------------- 111 (289)
..++.++++++.+ +.+|+.++++++|++|++++|.+.+.+|..++++.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 3455555555555 44555555555555555555555555555554443
Q ss_pred --ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366 112 --KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189 (289)
Q Consensus 112 --~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 189 (289)
+|++|++++|.+++ +|.. .++|++|++++|.+.+ ++. ..++|++|++++|.+.+ +| .++.+++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 45555555555543 3322 1344444444444432 111 01456666666666653 44 466666666666
Q ss_pred ccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
+++|.+++ +|..+ ++|++|++++|.+++.+ .+..+++|++|++++|.+++ +|.. .++|++|++++|.++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-
Confidence 66666653 33322 35666666666655532 45555556666665555542 3321 234555555555555
Q ss_pred ccCccccCCCCCCeEeCcCC
Q 045366 270 SLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~N 289 (289)
.+|. ++.+++|++|++++|
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSS
T ss_pred cccc-cCCCCCCCEEECCCC
Confidence 4442 555555555555544
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=8.6e-23 Score=189.08 Aligned_cols=213 Identities=16% Similarity=0.129 Sum_probs=170.3
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 146 (289)
+.+.++.+++. +|..+. +.+++|+|++|+|++..+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 45677777764 455453 579999999999998888899999999999999999997777889999999999999999
Q ss_pred CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc-cCCccccCCCCCcEEeccCCcCcccCCC
Q 045366 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPP 225 (289)
Q Consensus 147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 225 (289)
+.+..+..|..+++|++|++++|++.+..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|.+++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 986667789999999999999999997777789999999999999999875 3578889999999999999999887664
Q ss_pred -CCCCC----CCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-cCccccCCCCCCeE
Q 045366 226 -INNIS----SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSLSNTTNLHKL 284 (289)
Q Consensus 226 -~~~~~----~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L 284 (289)
+..+. ....++++.|.+. .++...+ ....++.+++++|..... .+..+..++.++..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred cccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 43332 3457888888887 5555555 455677888887755432 23345555555443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.7e-24 Score=184.59 Aligned_cols=203 Identities=17% Similarity=0.237 Sum_probs=155.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
.+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5678889999888876555 55688999999999988755 677788889999999999988767777788889999999
Q ss_pred ccCC-cCCC-CcchhccCCCCCceeeeecc-ccccc-CChhccCCC-CCCEEEccCc--cCc-ccCCccccCCCCCcEEe
Q 045366 142 ASNN-KLEG-EIPAEISNLLKFQILNIAKN-HLKGQ-LPASIGNLS-TLQEINVNGN--RLS-GRIPSTRSHVRNLISFN 213 (289)
Q Consensus 142 l~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 213 (289)
+++| .+++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9998 5664 35666788899999999998 77754 566677888 9999999988 444 34566677888999999
Q ss_pred ccCCc-CcccCC-CCCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc
Q 045366 214 VGLNQ-FSGMFP-PINNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 214 l~~n~-l~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
+++|. +++... .+..+++|++|++++|. +.......+ ..+++|++|++++| ++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cC
Confidence 99888 554333 37778889999998885 221111123 36888999999888 54
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.2e-21 Score=174.76 Aligned_cols=206 Identities=27% Similarity=0.325 Sum_probs=107.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.+++++|.+++ +|..+ .+|++|++++|++++ +| .+.++++|++|++++|.+++ +|... ++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence 567777777777765 34322 466677777776664 44 46666666666666666652 33221 34555555
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhc-----------------cCCCCCCEEEccCccCcc--cCCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-----------------GNLSTLQEINVNGNRLSG--RIPSTR 203 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~~~~--~~~~~~ 203 (289)
++|.+. .+| .++.+++|++|++++|++.+ +|..+ ...++|++|++++|.+++ ..|..+
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcC
Confidence 555554 333 24455555555555554442 12110 012445555555555543 111111
Q ss_pred c-------------CC-CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 204 S-------------HV-RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 204 ~-------------~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
. .+ ++|++|++++|.+++++.. +++|++|++++|.++ .+|. .+++|++|++++|++++
T Consensus 300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS
T ss_pred CEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCc
Confidence 1 11 3566666666666653322 356777777777776 4554 35778888888888887
Q ss_pred --ccCccccCC-------------CCCCeEeCcCC
Q 045366 270 --SLQDSLSNT-------------TNLHKLDINRN 289 (289)
Q Consensus 270 --~~~~~~~~~-------------~~L~~L~l~~N 289 (289)
.+|..++++ ++|++||+++|
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CCCCCTTCCEEECCC--------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 677777666 77888888776
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.8e-24 Score=186.64 Aligned_cols=210 Identities=20% Similarity=0.291 Sum_probs=170.1
Q ss_pred CCccccCCCCCcEEEccCCCCcccC----Cccccccccccccccccccc---CCCCCccc-------cCCCCCcEEEccC
Q 045366 79 LSPFVGYLSFLRSINLVNNSLRAEI----PHEVGNLFKLQNLTLTNNYF---SGKIPTNL-------SRCSNLVKFEASN 144 (289)
Q Consensus 79 ~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~l~~ 144 (289)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 5667778899999999999998653 34477899999999999754 34455444 6889999999999
Q ss_pred CcCCC----CcchhccCCCCCceeeeecccccccCChh----ccCC---------CCCCEEEccCccCc-ccCC---ccc
Q 045366 145 NKLEG----EIPAEISNLLKFQILNIAKNHLKGQLPAS----IGNL---------STLQEINVNGNRLS-GRIP---STR 203 (289)
Q Consensus 145 n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~---------~~L~~L~l~~n~~~-~~~~---~~~ 203 (289)
|.+.. .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++ +..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99986 47778899999999999999997544333 3334 89999999999997 3344 467
Q ss_pred cCCCCCcEEeccCCcCc--c---cCC-CCCCCCCCCEEEccCCccc----ccCchhhhcCCCCCcEEEccccccccc---
Q 045366 204 SHVRNLISFNVGLNQFS--G---MFP-PINNISSLEYIFIHKNRYH----GSLPLDIGVNLPNLRFFIISGNNLTGS--- 270 (289)
Q Consensus 204 ~~~~~L~~L~l~~n~l~--~---~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~--- 270 (289)
..+++|++|++++|.+. + ..+ .+..+++|++|++++|.++ ..+|..+. .+++|++|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHH
Confidence 78899999999999998 3 344 5778899999999999996 45666555 889999999999999865
Q ss_pred -cCcccc--CCCCCCeEeCcCC
Q 045366 271 -LQDSLS--NTTNLHKLDINRN 289 (289)
Q Consensus 271 -~~~~~~--~~~~L~~L~l~~N 289 (289)
++..+. .+++|+.|+|++|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHHHhhccCCCeEEEECcCC
Confidence 566664 4999999999987
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=4.2e-21 Score=174.85 Aligned_cols=174 Identities=22% Similarity=0.334 Sum_probs=150.2
Q ss_pred CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366 88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167 (289)
Q Consensus 88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (289)
+++.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 67655 378999999999998 777 457899999999999986 666 655 99999999
Q ss_pred cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCc
Q 045366 168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247 (289)
Q Consensus 168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 247 (289)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++++. +. ++|++|++++|+++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence 999996 665 68999999999999995 665 57899999999999998655 55 89999999999998 777
Q ss_pred hhhhcCCCCC-------cEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 248 LDIGVNLPNL-------RFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 248 ~~~~~~~~~L-------~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
. +. . +| +.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus 197 ~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 197 A-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp C-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred h-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 7 43 2 66 99999999999 68888888999999999998
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.1e-24 Score=192.93 Aligned_cols=227 Identities=17% Similarity=0.155 Sum_probs=118.1
Q ss_pred CeeEEEeccCCCCCCcCCcc-----ccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccCCCCCcccc-
Q 045366 63 QRVIGLDLRHQSIRGFLSPF-----VGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFSGKIPTNLS- 132 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 132 (289)
++++.|++++|.+.+..+.. ....++|++|++++|.+++. ++..+..+++|++|++++|.+....+..+.
T Consensus 113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 192 (461)
T 1z7x_W 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence 56666676666654321211 11234566666666655532 233344445555555555554322111111
Q ss_pred ----CCCCCcEEEccCCcCCCC----cchhccCC-----------------------------CCCceeeeeccccccc-
Q 045366 133 ----RCSNLVKFEASNNKLEGE----IPAEISNL-----------------------------LKFQILNIAKNHLKGQ- 174 (289)
Q Consensus 133 ----~l~~L~~L~l~~n~~~~~----~~~~~~~l-----------------------------~~L~~L~l~~n~~~~~- 174 (289)
..++|++|++++|.++.. ++..+..+ ++|++|++++|.+++.
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 123444455544444421 23333344 4455555555544432
Q ss_pred ---CChhccCCCCCCEEEccCccCcccCCccccC-----CCCCcEEeccCCcCcccC----C-CCCCCCCCCEEEccCCc
Q 045366 175 ---LPASIGNLSTLQEINVNGNRLSGRIPSTRSH-----VRNLISFNVGLNQFSGMF----P-PINNISSLEYIFIHKNR 241 (289)
Q Consensus 175 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~----~-~~~~~~~L~~L~l~~n~ 241 (289)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.. + .+..+++|++|++++|.
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 2333444555555555555554322222221 145566666666555331 1 13445778888888887
Q ss_pred ccccCchhhhc----CCCCCcEEEcccccccc----ccCccccCCCCCCeEeCcCC
Q 045366 242 YHGSLPLDIGV----NLPNLRFFIISGNNLTG----SLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 242 l~~~~~~~~~~----~~~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~l~~N 289 (289)
+.+..+..+.. ..++|++|++++|.+++ .++..+..+++|++|++++|
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 76443433331 25688888888888875 66777788888888888876
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=7e-24 Score=189.57 Aligned_cols=226 Identities=16% Similarity=0.175 Sum_probs=144.8
Q ss_pred eeEEEeccCCCCCC----cCCccccCCCCCcEEEccCCCCcccCCcccc-----cccccccccccccccCCC----CCcc
Q 045366 64 RVIGLDLRHQSIRG----FLSPFVGYLSFLRSINLVNNSLRAEIPHEVG-----NLFKLQNLTLTNNYFSGK----IPTN 130 (289)
Q Consensus 64 ~v~~l~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~ 130 (289)
+++.|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57888888888774 4567778888888888888887654333332 245688888888887743 2445
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhcc-----CCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCcccC--
Q 045366 131 LSRCSNLVKFEASNNKLEGEIPAEIS-----NLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGRI-- 199 (289)
Q Consensus 131 ~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~-- 199 (289)
+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 56678888888888887644333332 356888888888888753 4556667788888888888776432
Q ss_pred ---CccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhh----cCCCCCcEEEcccccc
Q 045366 200 ---PSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIG----VNLPNLRFFIISGNNL 267 (289)
Q Consensus 200 ---~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~Ls~n~l 267 (289)
+..+..+++|++|++++|.+++. ...+..+++|++|++++|.+.+..+..+. ...++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 12223466777777777777652 22244556677777777766533222221 1224666666666666
Q ss_pred ccc----cCccccCCCCCCeEeCcCC
Q 045366 268 TGS----LQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 268 ~~~----~~~~~~~~~~L~~L~l~~N 289 (289)
++. ++..+..+++|++|++++|
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred chHHHHHHHHHHhhCCCccEEEccCC
Confidence 543 3444555666666666654
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2.3e-21 Score=163.17 Aligned_cols=168 Identities=17% Similarity=0.277 Sum_probs=89.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.++++++.+... +.+..+++|++|++++|++.+..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 3455556655555443 225555556666666665553322 5555566666666655552 22 2555555666666
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 65555532 3455555555555555555533 345555555555555555553322 55555555555555555543
Q ss_pred CCCCCCCCCCCEEEccCCccc
Q 045366 223 FPPINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~ 243 (289)
. .+..+++|+.|++++|++.
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEE
T ss_pred h-hhccCCCCCEEECcCCccc
Confidence 2 2455555555555555554
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=5.5e-21 Score=165.72 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=144.2
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
+.+++++++++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999887 4666553 4689999999999866666676 899999999999999866677899999999999999
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-C---CCCCCCCEEEccCCcccc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-I---NNISSLEYIFIHKNRYHG 244 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~---~~~~~L~~L~l~~n~l~~ 244 (289)
|++....+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++++.. + ..+++|++|++++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 999877777788999999999999999877788899999999999999999876655 4 56889999999999998
Q ss_pred cCchhhhcCCCC--CcEEEccccccc
Q 045366 245 SLPLDIGVNLPN--LRFFIISGNNLT 268 (289)
Q Consensus 245 ~~~~~~~~~~~~--L~~L~Ls~n~l~ 268 (289)
.+|...+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 666555546666 478999998876
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=9.8e-21 Score=153.81 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=135.5
Q ss_pred CCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccccc
Q 045366 42 NSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN 121 (289)
Q Consensus 42 ~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 121 (289)
..|..+...|.|.++.|. ++.+.. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~------------~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCR------------SKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECT------------TSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEcc------------CCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 346666677777776664 333432 343333 78999999999999888888999999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366 122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS 201 (289)
Q Consensus 122 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (289)
.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|.+++..+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 998555566788999999999999998776777889999999999999998 6788889999999999999999876667
Q ss_pred cccCCCCCcEEeccCCcCcccC
Q 045366 202 TRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
.+..+++|+.|++++|.+....
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 7889999999999999887554
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=7.5e-21 Score=160.03 Aligned_cols=189 Identities=19% Similarity=0.309 Sum_probs=157.2
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
..+.+....+.+.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCC
Confidence 33455555555432 245678999999999999853 4 48889999999999999984 444 889999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 225 (289)
.+.+ ++ .+..+++|++|++++|++.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+
T Consensus 101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 9984 33 489999999999999999863 5688999999999999999854 678899999999999999998765
Q ss_pred CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc
Q 045366 226 INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS 270 (289)
Q Consensus 226 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 270 (289)
+..+++|++|++++|.++ .++. + ..+++|+.|++++|.++..
T Consensus 174 l~~l~~L~~L~L~~N~i~-~l~~-l-~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEEEEEEEECC
T ss_pred hcCCCccCEEECCCCcCC-CChh-h-ccCCCCCEEECcCCcccCC
Confidence 888999999999999998 4553 4 4899999999999999853
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.7e-20 Score=151.51 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=126.1
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 146 (289)
.+++++++++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 57777777765 354443 689999999999997777789999999999999999987778889999999999999999
Q ss_pred CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+++++++|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 986656667888899999999998887778888888888888888888887666778888888888888887753
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=151.15 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=128.5
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC-cccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
.++++++.++. +|..+. ..+++|++++|++++..+ ..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 78889988876 455543 456899999999987654 45888999999999999998777778889999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccC
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 998777778888999999999999988777888888888999999888888777888888888888888888876443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.1e-20 Score=163.88 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=149.4
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccc-cccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG-NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
+.++++++.+.. +|..+. +.++.|+|++|++++..+..|. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 368888888876 455444 5689999999999988788887 899999999999999977778899999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc---cCCCCCcEEeccCCcCcc
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR---SHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~ 221 (289)
|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997767789999999999999999998888899999999999999999996444445 578999999999999997
Q ss_pred cCCC-CCCCCC--CCEEEccCCccc
Q 045366 222 MFPP-INNISS--LEYIFIHKNRYH 243 (289)
Q Consensus 222 ~~~~-~~~~~~--L~~L~l~~n~l~ 243 (289)
++.. +..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 6654 555555 488999999986
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.8e-20 Score=149.37 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=135.2
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN 169 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 169 (289)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57889999887 4666554 68999999999999766778999999999999999999777899999999999999999
Q ss_pred cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccc
Q 045366 170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHG 244 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 244 (289)
.+....+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99966666688999999999999999988888999999999999999999988876 8889999999999999863
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=148.36 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=136.1
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCC-ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP-TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
+.+++++|.++. +|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999984 676553 467899999999986544 4578999999999999999977777899999999999999
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP 247 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 247 (289)
|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999987788899999999999999999988889999999999999999999998765 8899999999999999875554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.1e-20 Score=173.70 Aligned_cols=168 Identities=17% Similarity=0.294 Sum_probs=127.1
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
..++.|+++++.+... +.+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ +| .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 5677788888877653 247778888888888888875443 7788888888888888873 33 5777888888888
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 8888874 2 4577888888888888888754 567788888888888888875544 77788888888888888765
Q ss_pred CCCCCCCCCCCEEEccCCccc
Q 045366 223 FPPINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~ 243 (289)
+.+..+++|+.|++++|.+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEE
T ss_pred -hHHccCCCCCEEEccCCcCc
Confidence 34677788888888888776
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4.7e-20 Score=169.49 Aligned_cols=191 Identities=18% Similarity=0.311 Sum_probs=158.9
Q ss_pred eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+. +. +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence 4445566666655433 4677899999999999974 34 588999999999999999854 43 88999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP 224 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 224 (289)
|.+.+ ++ .+..+++|++|++++|.+.+. +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..+
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99984 33 788999999999999999853 4688999999999999999854 678899999999999999998766
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366 225 PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271 (289)
Q Consensus 225 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 271 (289)
+..+++|++|++++|.+++ ++ .+. .+++|+.|+|++|.+.+..
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~-l~-~l~-~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISD-LR-ALA-GLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CG-GGT-TCTTCSEEECCSEEEECCC
T ss_pred -hccCCCCCEEECcCCCCCC-Ch-HHc-cCCCCCEEEccCCcCcCCc
Confidence 8889999999999999984 44 444 8999999999999998643
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.5e-19 Score=146.85 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=135.3
Q ss_pred CcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 89 LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 89 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888887 5666543 7999999999999988888899999999999999999866667789999999999999
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP 247 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 247 (289)
|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+....+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999777777899999999999999998 7888889999999999999999988766 8889999999999999875443
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=5.4e-20 Score=169.39 Aligned_cols=192 Identities=23% Similarity=0.299 Sum_probs=132.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
++++.|++++|.+++ +|. .+++|++|++++|++++ +|. .+++|++|++++|.++ .+|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence 678999999999875 444 56788888888888874 333 3455666666666555 33432 244555555
Q ss_pred cCCcCCCCcch---hcc--------------CCCCCceeeeecccccccCChhc-----------------cCCCCCCEE
Q 045366 143 SNNKLEGEIPA---EIS--------------NLLKFQILNIAKNHLKGQLPASI-----------------GNLSTLQEI 188 (289)
Q Consensus 143 ~~n~~~~~~~~---~~~--------------~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L 188 (289)
++|.+++ +|. .+. .+++|+.|++++|.+.+ +|..+ ..+++|+.|
T Consensus 149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence 5555442 111 111 22566666666666653 22111 123678999
Q ss_pred EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++++|.+++ +| ..+++|+.|++++|.+++++. .+++|++|++++|+++ .+|..+. .+++|+.|++++|.++
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~-~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGG-GSCTTCEEECCSCCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHh-hccccCEEEecCCCCC
Confidence 999998884 55 456899999999999997655 5679999999999998 8888766 8999999999999999
Q ss_pred cccCccccC
Q 045366 269 GSLQDSLSN 277 (289)
Q Consensus 269 ~~~~~~~~~ 277 (289)
+..|..+..
T Consensus 298 ~~~~~~l~~ 306 (622)
T 3g06_A 298 ERTLQALRE 306 (622)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHh
Confidence 887776543
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.7e-20 Score=147.69 Aligned_cols=151 Identities=15% Similarity=0.256 Sum_probs=63.8
Q ss_pred ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 189 (289)
+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 233 2334444444444444332 112344444444444444444433344444444444444
Q ss_pred ccCccCcccCCccccCCCCCcEEeccCCc-CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQ-FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
+++|.+++..+..++.+++|++|++++|. +... +.+..+++|++|++++|.+++ ++ .+. .+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIE-DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGG-GCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-Hhc-cCCCCCEEEeeCcccC
Confidence 44444443334444444444444444444 3222 234444455555555555442 22 222 4455555555555543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=5.6e-20 Score=145.86 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=95.9
Q ss_pred cCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCce
Q 045366 84 GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQI 163 (289)
Q Consensus 84 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 163 (289)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44566667777776666 344 4666667777777766554 2235666667777777777666555666666677777
Q ss_pred eeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcc
Q 045366 164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRY 242 (289)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 242 (289)
|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 7777776666556666666777777777766 44 333 4666667777777777666543 455666677777776665
Q ss_pred c
Q 045366 243 H 243 (289)
Q Consensus 243 ~ 243 (289)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=1.1e-21 Score=184.26 Aligned_cols=163 Identities=21% Similarity=0.233 Sum_probs=68.7
Q ss_pred CCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcc---------cCCcccccccccccccccc
Q 045366 50 LCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA---------EIPHEVGNLFKLQNLTLTN 120 (289)
Q Consensus 50 ~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~ 120 (289)
...|.+..++. ++++.+++.++.+... +..+ ++.++|+.+.+.+ ..+..|..++.|++|+|++
T Consensus 162 ~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 162 SGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred cccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCC
Confidence 34566655544 5677777777766543 2211 2223333332221 2345555666666666666
Q ss_pred cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP 200 (289)
Q Consensus 121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (289)
|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 6665 55555556666666666666665 55666666666666666666666 45656666666666666666665 455
Q ss_pred ccccCCCCCcEEeccCCcCcccCC
Q 045366 201 STRSHVRNLISFNVGLNQFSGMFP 224 (289)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~~~~ 224 (289)
..++.+++|++|+|++|.+++.++
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHH
T ss_pred hhhhcCCCccEEeCCCCccCCCCh
Confidence 556666666666666666655443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=4.5e-22 Score=181.79 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=159.5
Q ss_pred cCCCCCcEEEccCCCCcccCCcccccccccccccccccc-------------cCCCCCccccCCCCCcEEE-ccCCcCCC
Q 045366 84 GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-------------FSGKIPTNLSRCSNLVKFE-ASNNKLEG 149 (289)
Q Consensus 84 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~ 149 (289)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999997 689999999999999997775 3455667777788888888 5555432
Q ss_pred Ccch------hccC--CCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 150 EIPA------EISN--LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 150 ~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
.++. .+.. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 1111 1358999999999995 665 899999999999999999 789999999999999999999998
Q ss_pred cCCCCCCCCCCCEEEccCCcccccC-chhhhcCCCCCcEEEccccccccccCc---cccCCCCCCeEeC
Q 045366 222 MFPPINNISSLEYIFIHKNRYHGSL-PLDIGVNLPNLRFFIISGNNLTGSLQD---SLSNTTNLHKLDI 286 (289)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~L~l 286 (289)
++ .+..+++|++|++++|++++.. |..+. .+++|+.|+|++|.+++..|. .+..+++|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 54 7889999999999999998655 76766 899999999999999976553 3456899999975
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=5.5e-20 Score=152.46 Aligned_cols=171 Identities=20% Similarity=0.313 Sum_probs=143.5
Q ss_pred CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL 164 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (289)
.+.++..++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3556777889999988543 5788999999999999998 566 68889999999999999985444 8999999999
Q ss_pred eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccc
Q 045366 165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG 244 (289)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 244 (289)
++++|++.+ ++. +.. ++|++|++++|.+++ + ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 999999985 343 333 899999999999985 3 36889999999999999999863 57888999999999999985
Q ss_pred cCchhhhcCCCCCcEEEccccccccc
Q 045366 245 SLPLDIGVNLPNLRFFIISGNNLTGS 270 (289)
Q Consensus 245 ~~~~~~~~~~~~L~~L~Ls~n~l~~~ 270 (289)
. ..+ ..+++|+.|++++|.+++.
T Consensus 165 ~--~~l-~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGL-TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTS-TTCCCCCEEEEEEEEEECC
T ss_pred h--HHh-ccCCCCCEEeCCCCcccCC
Confidence 4 333 4889999999999999854
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=3.7e-20 Score=153.50 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=143.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.++++++.+++.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 45667788888887653 57788999999999999984 55 68899999999999999984 444 899999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|.+.+ ++.. .. ++|++|++++|++.+. +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999984 4433 23 9999999999999863 4689999999999999999854 3 688999999999999999987
Q ss_pred CCCCCCCCCCCEEEccCCcccc
Q 045366 223 FPPINNISSLEYIFIHKNRYHG 244 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~~ 244 (289)
..+..+++|++|++++|++.+
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 558899999999999999973
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.3e-18 Score=132.02 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=93.5
Q ss_pred CCCcEEEccCCCCc-ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366 87 SFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN 165 (289)
Q Consensus 87 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (289)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 66777777777776 55676677777777777777777643 5667777777777777777755666666677777777
Q ss_pred eecccccccC-ChhccCCCCCCEEEccCccCcccCC---ccccCCCCCcEEeccCCcCcccC
Q 045366 166 IAKNHLKGQL-PASIGNLSTLQEINVNGNRLSGRIP---STRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 166 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
+++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+...+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777776432 2566677777777777777764333 35666677777777766665443
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.2e-19 Score=168.68 Aligned_cols=183 Identities=19% Similarity=0.152 Sum_probs=117.6
Q ss_pred CCCcEEEccCCCCcccCCcccccccccc-----cccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCC
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQ-----NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF 161 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (289)
+.++.|+|.+|.+.. .+..+.....|+ .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 457889999988875 344333322233 2333344444 56778889999999999999998 778778899999
Q ss_pred ceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCc
Q 045366 162 QILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNR 241 (289)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 241 (289)
++|+|++|.+. .+|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+..++..+..+++|++|+|++|.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 99999999999 88999999999999999999999 78999999999999999999998776669999999999999999
Q ss_pred ccccCchhhhcCCCCCcEEEccccccccccCcc
Q 045366 242 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274 (289)
Q Consensus 242 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 274 (289)
+++.+|..+...-.....+++++|.+++.+|..
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 997777665411111223556666666655553
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=3.5e-18 Score=134.85 Aligned_cols=129 Identities=25% Similarity=0.380 Sum_probs=77.0
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCc-cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT-NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
+.+++++++++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 55666666664 44544332 666666666666643332 255666666666666666655566666666666666666
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
|++.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 66665555556666666666666666665555556666666666666665554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=4.3e-21 Score=175.31 Aligned_cols=193 Identities=12% Similarity=0.195 Sum_probs=155.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-------------CcccCCccccccccccccc-ccccccCCCCC
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-------------LRAEIPHEVGNLFKLQNLT-LTNNYFSGKIP 128 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~ 128 (289)
+.++.+++++|.+. .+|+.++++++|++|++++|. ..+..|..+.++++|+.|+ ++.|.+. .++
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLR 426 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHH
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhh
Confidence 34556778888876 578999999999999997764 4556777888899999998 5665432 111
Q ss_pred c------cccC--CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366 129 T------NLSR--CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP 200 (289)
Q Consensus 129 ~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (289)
. .+.. ...|+.|++++|.+++ +|. |+.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+++ +|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 0 0100 1258999999999985 676 999999999999999999 789999999999999999999996 66
Q ss_pred ccccCCCCCcEEeccCCcCcccC-CC-CCCCCCCCEEEccCCcccccCch--hhhcCCCCCcEEEc
Q 045366 201 STRSHVRNLISFNVGLNQFSGMF-PP-INNISSLEYIFIHKNRYHGSLPL--DIGVNLPNLRFFII 262 (289)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~L 262 (289)
.++.+++|+.|++++|.+++.. +. +..+++|++|++++|.+++..+. .+...+++|+.|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8999999999999999999985 44 99999999999999999855442 23445899999874
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.2e-17 Score=131.86 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=112.3
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCc-ccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPH-EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
+.+++++++++. +|..+. .++++|++++|++.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 468888888854 555454 3899999999999876654 488999999999999999988888999999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCccc
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
|++++..+..|..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999977777899999999999999999988888899999999999999998754
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=8.8e-18 Score=129.62 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=120.0
Q ss_pred CeeEEEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999998 67888889999999999999999865 7789999999999999999976888787899999999
Q ss_pred ccCCcCCCCc-chhccCCCCCceeeeecccccccCC---hhccCCCCCCEEEccCccCcccCCc
Q 045366 142 ASNNKLEGEI-PAEISNLLKFQILNIAKNHLKGQLP---ASIGNLSTLQEINVNGNRLSGRIPS 201 (289)
Q Consensus 142 l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (289)
+++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+. ..|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999998542 2789999999999999999996555 47899999999999999887 3443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=4.9e-18 Score=128.38 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCCcEEEccCCCCc-ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366 87 SFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN 165 (289)
Q Consensus 87 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (289)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555566666666666666666533 4566666666666666666655566666666666666
Q ss_pred eeccccccc-CChhccCCCCCCEEEccCccCcccCC---ccccCCCCCcEEecc
Q 045366 166 IAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIP---STRSHVRNLISFNVG 215 (289)
Q Consensus 166 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 215 (289)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 23556666666667776666664433 356666666666654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=9.4e-18 Score=143.51 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=90.6
Q ss_pred CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCC-EEEccCCcccccCchhhhcCCCCCcE
Q 045366 182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLE-YIFIHKNRYHGSLPLDIGVNLPNLRF 259 (289)
Q Consensus 182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~ 259 (289)
+++|+.+++++|.++...+.+|..+++|+++++.+| +..+... |.++++|+ .+++.+ .++ .+++..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 789999999999998777789999999999999998 7766665 99999999 999998 676 788777879999999
Q ss_pred EEccccccccccCccccCCCCCCeEeC
Q 045366 260 FIISGNNLTGSLQDSLSNTTNLHKLDI 286 (289)
Q Consensus 260 L~Ls~n~l~~~~~~~~~~~~~L~~L~l 286 (289)
+++++|+++...+..|.+|++|+.+..
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999777789999999999864
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.1e-17 Score=126.35 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=114.1
Q ss_pred CeeEEEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
++++.+++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67899999999998 67888899999999999999999865 7789999999999999999976888888899999999
Q ss_pred ccCCcCCCC-cchhccCCCCCceeeeecccccccCC---hhccCCCCCCEEEccC
Q 045366 142 ASNNKLEGE-IPAEISNLLKFQILNIAKNHLKGQLP---ASIGNLSTLQEINVNG 192 (289)
Q Consensus 142 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 192 (289)
+++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999853 34889999999999999999997655 5788999999998863
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=126.46 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=93.3
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
+.++++++.++. +|..+. +++++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 357777777764 344333 57888888888887 56677888888888888888888666667778888888888888
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887666667777777777777777777555555677777777777777664
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=3e-16 Score=123.81 Aligned_cols=127 Identities=22% Similarity=0.354 Sum_probs=70.3
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN 169 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 169 (289)
+.++++++.++ .+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 3444332 35666666666665 55555555666666666666665544455555556666666665
Q ss_pred cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366 170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (289)
.+.+..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555544455555555555555555555433344555555555555555543
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=6.9e-19 Score=161.93 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=62.9
Q ss_pred CeeEEEeccCCCCCCcCCccccC-CC-CCcEEEccCCC-Ccc-cCCcccccccccccccccccccCCC----CCccccCC
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGY-LS-FLRSINLVNNS-LRA-EIPHEVGNLFKLQNLTLTNNYFSGK----IPTNLSRC 134 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~-l~-~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l 134 (289)
++++.|+++++.+++..+..+.. ++ +|++|++++|. +.. .++....++++|++|++++|.+.+. ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 44555666555544333333332 22 25555555554 110 0111123456666666666665433 11223345
Q ss_pred CCCcEEEccCCcCCC----CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366 135 SNLVKFEASNNKLEG----EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN 191 (289)
Q Consensus 135 ~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 191 (289)
++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++..+..+++|++++++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 666666666666542 223344556666666666665553 34444555555555554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=4.8e-16 Score=120.86 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=76.7
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 146 (289)
.++++++++... |..+ .++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555432 3222 2567777777777765555556667777777777777664444455666667777776666
Q ss_pred CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc
Q 045366 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG 197 (289)
Q Consensus 147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 197 (289)
+++..+..+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 665544555666666666666666664444444556666666666665553
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=4.3e-16 Score=121.15 Aligned_cols=112 Identities=19% Similarity=0.299 Sum_probs=62.5
Q ss_pred CCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEec
Q 045366 135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV 214 (289)
Q Consensus 135 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 214 (289)
++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555555433344455555555555555555444444555566666666666665444444555666666666
Q ss_pred cCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366 215 GLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL 246 (289)
Q Consensus 215 ~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 246 (289)
++|.+++.++. +..+++|++|++++|.+.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 66666655444 455666666666666665443
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.1e-18 Score=160.61 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=70.0
Q ss_pred cchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccC-----------Cc
Q 045366 151 IPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGL-----------NQ 218 (289)
Q Consensus 151 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~ 218 (289)
+|..+..+++|++|++++|.+.+... ..+..+++|++|+++++-..+.++.....+++|++|++++ +.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 33444445555555555555433222 2234555555555552211112222234455666666662 33
Q ss_pred CcccC-CC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc----ccccccc-----cCccccCCCCCCeEeCc
Q 045366 219 FSGMF-PP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS----GNNLTGS-----LQDSLSNTTNLHKLDIN 287 (289)
Q Consensus 219 l~~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~~~~~~~~~~L~~L~l~ 287 (289)
+++.. .. ...+++|++|++..+.+++..+..+...+++|+.|+++ .|.+++. ++..+.++++|++|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 33211 11 23456677777766666655555555446777777775 4566642 33445667777777764
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=4.7e-16 Score=120.82 Aligned_cols=136 Identities=16% Similarity=0.217 Sum_probs=108.1
Q ss_pred cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366 130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL 209 (289)
Q Consensus 130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 209 (289)
.+..+.+|++|++++|.+. .++......++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3567789999999999988 4454333444999999999999864 578889999999999999986544556888999
Q ss_pred cEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCchh---hhcCCCCCcEEEcccccccc
Q 045366 210 ISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPLD---IGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 210 ~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~ 269 (289)
++|++++|.+...+. .+..+++|++|++++|.++ .+|.. .+..+++|+.||+++|...+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999977665 4778889999999999987 56654 34478999999999887763
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=5.9e-16 Score=120.29 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=109.7
Q ss_pred ccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCC
Q 045366 106 EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185 (289)
Q Consensus 106 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 185 (289)
.+.++.+|++|++++|.++ .+|......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4667889999999999998 5554333344999999999999843 678889999999999999986555556889999
Q ss_pred CEEEccCccCcccCCc--cccCCCCCcEEeccCCcCcccCCC----CCCCCCCCEEEccCCccc
Q 045366 186 QEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQFSGMFPP----INNISSLEYIFIHKNRYH 243 (289)
Q Consensus 186 ~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n~l~ 243 (289)
+.|++++|.++ .+|. .+..+++|+.|++++|.+...+.. +..+++|++|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999997 4555 788899999999999999876653 678889999999999876
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=2.5e-18 Score=136.36 Aligned_cols=132 Identities=19% Similarity=0.335 Sum_probs=84.0
Q ss_pred eeEEEeccCCCCCCcCCc------cccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCC
Q 045366 64 RVIGLDLRHQSIRGFLSP------FVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNL 137 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 137 (289)
.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555555555555444 66667777777777777764 45 6667777777777777776 566655556677
Q ss_pred cEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCC
Q 045366 138 VKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIP 200 (289)
Q Consensus 138 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~ 200 (289)
++|++++|.+.+ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777777663 33 46666677777777776664222 356666677777777766654433
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=8.4e-16 Score=131.38 Aligned_cols=176 Identities=11% Similarity=0.114 Sum_probs=118.1
Q ss_pred ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccc----cccCChhccCCCCC
Q 045366 110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHL----KGQLPASIGNLSTL 185 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~~~~L 185 (289)
+++|+.+++.+ .++...+.+|.++++|+++++..|.+....+..|..+.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 66645556677777777777777776655556666666666555444221 11112223333333
Q ss_pred C--------------------------EEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366 186 Q--------------------------EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIH 238 (289)
Q Consensus 186 ~--------------------------~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~ 238 (289)
+ .+.+.++-...........+++|+.+++++|.++.+... |.++++|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3 222222110000000011378999999999999988776 9999999999999
Q ss_pred CCcccccCchhhhcCCCCCc-EEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 239 KNRYHGSLPLDIGVNLPNLR-FFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 239 ~n~l~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+| ++ .++...|.++.+|+ .+++.+ .++...+..|.+|++|+.+++++|
T Consensus 259 ~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 259 HN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred cc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 98 65 78888888999999 999998 777666789999999999999654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=6.2e-18 Score=134.09 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=78.0
Q ss_pred ccccccccccccccCCCCCc------cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCC
Q 045366 110 LFKLQNLTLTNNYFSGKIPT------NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS 183 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 183 (289)
...++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34445555555555444443 44455555555555555543 33 4455555555555555555 3444444445
Q ss_pred CCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCch---------hhhc
Q 045366 184 TLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPL---------DIGV 252 (289)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~ 252 (289)
+|+.|++++|.+++ +| .+..+++|++|++++|.+++... .+..+++|++|++++|.+.+.+|. ..+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 55555555555553 22 34455555555555555554332 245555666666666666543332 2233
Q ss_pred CCCCCcEEEccccccc
Q 045366 253 NLPNLRFFIISGNNLT 268 (289)
Q Consensus 253 ~~~~L~~L~Ls~n~l~ 268 (289)
.+++|+.|| ++.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 667777765 45544
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=4.1e-17 Score=150.14 Aligned_cols=128 Identities=10% Similarity=0.127 Sum_probs=78.4
Q ss_pred CeeEEEeccCCCCCCcCCcccc-CCCCCcEEEccCC-CCccc-CCcccccccccccccccccccCCCCCccc----cCCC
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVG-YLSFLRSINLVNN-SLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNL----SRCS 135 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 135 (289)
++++.|+++++.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5678888888877665444454 5788888888888 44432 33334468888888888888765443333 3567
Q ss_pred CCcEEEccCCc--CCC-CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEc
Q 045366 136 NLVKFEASNNK--LEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINV 190 (289)
Q Consensus 136 ~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 190 (289)
+|++|++++|. +.. .++..+..+++|++|++.+|...+.++..+..+++|+++++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 88888888876 221 11222345678888888776221123444444455555543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=5.4e-14 Score=123.15 Aligned_cols=123 Identities=9% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCCceeeeecccccccCChhccCCCCCCEEEccCccCc-----ccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366 159 LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS-----GRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL 232 (289)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L 232 (289)
.+|+.+.+. +.+......+|.++++|+.+.+.+|.+. ...+.+|..+++|+.+++. +.+..+... |.++++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 344444442 2233233445555555555555554432 2334455555555555555 234433333 5555556
Q ss_pred CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC-CCCeEeC
Q 045366 233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT-NLHKLDI 286 (289)
Q Consensus 233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l 286 (289)
+.+.+..+ ++ .+....|.++ +|+.+++++|.+....+..|.+++ +++.|.+
T Consensus 326 ~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 326 TQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred cEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 66555433 33 3444444455 566666665555544444455443 4444443
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=2.6e-17 Score=151.48 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=37.7
Q ss_pred CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCc-cccCCCCCCeEeCcCC
Q 045366 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD-SLSNTTNLHKLDINRN 289 (289)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~N 289 (289)
+++|++|++++|.+++.....+..++++|++|++++|.+++.... ....+++|++|++++|
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 556777777777665444444434567777777777777544332 3445677777777665
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1e-13 Score=121.42 Aligned_cols=214 Identities=10% Similarity=0.079 Sum_probs=168.8
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 143 (289)
+++.+++..+ +...-...|..+ +|+.+.+.. .+...-+.+|.++++|+.+++.+|.++.....+|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4677777654 665556677774 699999986 67666778899999999999999998844445565 6899999998
Q ss_pred CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc---
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS--- 220 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~--- 220 (289)
.+ +.......|..+++|+.+++..+ +......+|.+ .+|+.+.+. +.++.....+|..+++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 54 66556788999999999999875 55455667777 789999994 4566566789999999999999888765
Q ss_pred --ccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 221 --GMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 221 --~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.+... |.++++|+.+.+.+ .++ .++...|.++.+|+.+++.++ ++......|.+| +|+.+++++|
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 34444 89999999999984 465 788888878999999999655 665667789999 9999999875
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=4.1e-14 Score=109.20 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=56.4
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN 169 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 169 (289)
+.+++++|.++. +|..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666652 44433 245556666666655444555555555666666655555444444555555555555555
Q ss_pred cccccCChhccCCCCCCEEEccCccCc
Q 045366 170 HLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
++.+..+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555444444555555555555555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=5.1e-14 Score=108.65 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=90.2
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
+.++++++.++. +|..+. +++++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 478888888876 455443 78999999999999888888999999999999999999666667789999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeeccccccc
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQ 174 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (289)
.+.+..+..|..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99876667799999999999999988743
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=8.5e-14 Score=107.83 Aligned_cols=104 Identities=25% Similarity=0.291 Sum_probs=58.2
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN 169 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 169 (289)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 3444432 55666666666666555555666666666666666665443444555556666666655
Q ss_pred cccccCChhccCCCCCCEEEccCccCc
Q 045366 170 HLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
.+.+..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555433334555555555555555554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1e-13 Score=107.38 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=89.9
Q ss_pred EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
+.++++++.+.. +|..+. ++|++|++++|++.+..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 578999998864 565554 88999999999999888889999999999999999999655556789999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeecccccc
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKG 173 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 173 (289)
.+.+..+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9986666669999999999999999873
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=2.3e-14 Score=124.36 Aligned_cols=169 Identities=13% Similarity=0.131 Sum_probs=121.6
Q ss_pred ccccccccccccccCCCCCcc----cc-CCCCCcEEEccCCcCCCCcchhc-cCCCCCceeeeecccccccCChhc----
Q 045366 110 LFKLQNLTLTNNYFSGKIPTN----LS-RCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI---- 179 (289)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~---- 179 (289)
++.|++|++++|.++...... +. ..++|++|++++|.++......+ ..+++|++|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999987432222 22 23689999999999874333333 345789999999999975443333
Q ss_pred -cCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCcccC-----CCCCCCCCCCEEEccCCcccccCchh
Q 045366 180 -GNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGMF-----PPINNISSLEYIFIHKNRYHGSLPLD 249 (289)
Q Consensus 180 -~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~ 249 (289)
...++|++|++++|.+++. ++..+...++|++|++++|.+.+.. ..+...++|++|++++|.+++.-...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568999999999998743 3445577889999999999987421 12566779999999999997432222
Q ss_pred hh---cCCCCCcEEEccccccccccCccccCC
Q 045366 250 IG---VNLPNLRFFIISGNNLTGSLQDSLSNT 278 (289)
Q Consensus 250 ~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 278 (289)
+. ...++|++|+|++|.+++.....+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 22 256899999999999986655555433
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.4e-12 Score=110.58 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=87.7
Q ss_pred EeccCC-CCCCcCCccccCCCCCcEEEccC-CCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 68 LDLRHQ-SIRGFLSPFVGYLSFLRSINLVN-NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 68 l~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
++++++ +++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 466666 6765 677 99999999999996 9999877788999999999999999999888888999999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeeccccc
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
.+++..+..|..++ |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99866666666665 999999999886
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.2e-14 Score=126.00 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCCcEEEccCCCCcccCCcccccc-----cccccccccccccCCCCCccc-cCCCCCcEEEccCCcCCCCcchhc-----
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNL-----FKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLEGEIPAEI----- 155 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----- 155 (289)
++|+.|++++|.++......+... ++|++|+|++|.+.......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 556777777777764333333322 567777777776653222222 224567777777777753333333
Q ss_pred cCCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCcccCC---
Q 045366 156 SNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGMFP--- 224 (289)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~--- 224 (289)
...++|++|++++|.+++. ++..+...++|++|++++|.+++. ++..+...++|++|++++|.++....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777776542 333446677777777777777542 24455566677777777777763211
Q ss_pred --CCCCCCCCCEEEccCCccccc
Q 045366 225 --PINNISSLEYIFIHKNRYHGS 245 (289)
Q Consensus 225 --~~~~~~~L~~L~l~~n~l~~~ 245 (289)
.+...++|++|++++|.+++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 133456777888888777643
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=5.4e-12 Score=108.38 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=85.2
Q ss_pred cEEEccCC-CCcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366 90 RSINLVNN-SLRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167 (289)
Q Consensus 90 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (289)
..++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4777 88888999999986 88886666788889999999999999987778888899999999999
Q ss_pred cccccccCChhccCCCCCCEEEccCccCc
Q 045366 168 KNHLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
+|++.+..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999865555565555 999999988876
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=1.2e-11 Score=106.59 Aligned_cols=199 Identities=10% Similarity=0.121 Sum_probs=105.1
Q ss_pred CeeEEEeccCCCCCC-c-------CCccccCCCCCcEEEccCCCCc---------ccCCcccccccccccccccccccCC
Q 045366 63 QRVIGLDLRHQSIRG-F-------LSPFVGYLSFLRSINLVNNSLR---------AEIPHEVGNLFKLQNLTLTNNYFSG 125 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~ 125 (289)
.+|+.|.+......+ . +......+++|+.|.+...... +.+...+..+++|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777776554432 1 1223445678888888654321 112233455677888887776311
Q ss_pred CCCccccCCCCCcEEEccCCcCCCCcchhcc--CCCCCceeeeec--cccccc-----CChhc--cCCCCCCEEEccCcc
Q 045366 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEIS--NLLKFQILNIAK--NHLKGQ-----LPASI--GNLSTLQEINVNGNR 194 (289)
Q Consensus 126 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~l~~n~ 194 (289)
.++. + .+++|+.|++..+.+.......++ .+|+|++|+++. +...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2332 3 267778888777766533333333 677777777753 111111 11112 246677777777776
Q ss_pred CcccCCccc---cCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366 195 LSGRIPSTR---SHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN 266 (289)
Q Consensus 195 ~~~~~~~~~---~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 266 (289)
+.+..+..+ ..+++|++|+++.|.+.+. ...+.++++|+.|++++|.+++.....+...+ ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 654332222 2456677777777766542 11134456677777777666533333332112 3456666655
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=3.7e-11 Score=103.48 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=120.6
Q ss_pred CCCcEEEccCCCCcc-c-------CCcccccccccccccccccccC---------CCCCccccCCCCCcEEEccCCcCCC
Q 045366 87 SFLRSINLVNNSLRA-E-------IPHEVGNLFKLQNLTLTNNYFS---------GKIPTNLSRCSNLVKFEASNNKLEG 149 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~ 149 (289)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|+++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788888655442 1 1233456789999988654321 123344567789999999887311
Q ss_pred CcchhccCCCCCceeeeecccccccCChhcc--CCCCCCEEEccC--ccCccc-----CCccc--cCCCCCcEEeccCCc
Q 045366 150 EIPAEISNLLKFQILNIAKNHLKGQLPASIG--NLSTLQEINVNG--NRLSGR-----IPSTR--SHVRNLISFNVGLNQ 218 (289)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~l~~n~ 218 (289)
.++. + .+++|+.|++..+.+.......+. .+++|+.|+++. +...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2233 3 378899999988877644333443 688999998853 221111 11122 247889999998888
Q ss_pred CcccCCC----CCCCCCCCEEEccCCcccccCchhhh---cCCCCCcEEEccccccccccCccccC-CCCCCeEeCcC
Q 045366 219 FSGMFPP----INNISSLEYIFIHKNRYHGSLPLDIG---VNLPNLRFFIISGNNLTGSLQDSLSN-TTNLHKLDINR 288 (289)
Q Consensus 219 l~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l~~ 288 (289)
+.+.... ...+++|++|+++.|.+.+.-+..+. ..+++|+.|++++|.+++..-..+.. + ...++++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 7632211 23467889999988888754333332 24688999999988887554444443 2 34455554
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.1e-08 Score=89.30 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=66.9
Q ss_pred hccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCC
Q 045366 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPN 256 (289)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 256 (289)
+|..+..|+.+.+..+... ....+|..++.|+.+.+. +.+..+... |.++.+|+.+.+..+ ++ .+....|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence 3455566666666543322 334556666666666664 334444443 777778888887654 44 566666667788
Q ss_pred CcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 257 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
|+.+.+..+ ++......|.+|++|+.+++.+|
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888543 55444567888888888877654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=8.6e-09 Score=89.97 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=85.4
Q ss_pred CccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc-------------
Q 045366 80 SPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK------------- 146 (289)
Q Consensus 80 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------- 146 (289)
...|..+++|+.+.+..+.. .....+|.++.+|+.+++..+ +......++.++..|+.+.+..+.
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 34566677777777765432 244556666777777776554 221223334444444443332221
Q ss_pred --------CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCc
Q 045366 147 --------LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQ 218 (289)
Q Consensus 147 --------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 218 (289)
+.......|..+..++.+.+..+... .....|..+..++.+....+.+ ...++..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence 11111233445555555555443222 2222333334444333332211 1123344444444444332
Q ss_pred CcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeC
Q 045366 219 FSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI 286 (289)
Q Consensus 219 l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 286 (289)
+..+... |.++.+|+.+++..+ ++ .+....|.++.+|+.+++..+ ++......|.+|++|+.+++
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 2222222 444445555544322 22 344343434445555544433 33233344455555554444
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.83 E-value=1.1e-07 Score=83.01 Aligned_cols=180 Identities=12% Similarity=0.022 Sum_probs=119.0
Q ss_pred cCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc---------
Q 045366 102 EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK--------- 172 (289)
Q Consensus 102 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--------- 172 (289)
.-..+|.++++|+.+.+..+... .....|.++.+|+.+.+..+ +.......|..+..|+.+.+..+...
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 34567999999999999766433 55677888999999998765 44344566777777777776554322
Q ss_pred ------------ccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCC
Q 045366 173 ------------GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKN 240 (289)
Q Consensus 173 ------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 240 (289)
......+..+..++.+.+..+... ....++..+..++.+......+. ...+..+.+|+.+.+..+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--cccccccccccccccccc
Confidence 011123344455555555544332 33445555566666555443321 112677888999988765
Q ss_pred cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 241 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
++ .++...|.++.+|+.+++.++ ++......|.+|++|+.+++..|
T Consensus 308 -i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 -VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 44 677777778999999999754 66555678999999999988654
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.83 E-value=7.8e-08 Score=83.87 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=89.7
Q ss_pred hccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL 232 (289)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L 232 (289)
.|..+..|+.+.+..+... ....+|.++..|+.+.+.. .+......+|..+.+|+.+++..+ ++.+... |.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3455566666666543332 3456788899999999964 455456678999999999999764 5555444 9999999
Q ss_pred CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
+++.+..+ ++ .+....|.++.+|+.+++.++... ...+..+.+|+.+.+..
T Consensus 337 ~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 337 ERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-------
T ss_pred CEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCC
Confidence 99999754 55 788888889999999999988643 24577888898887754
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=3.9e-11 Score=98.55 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=65.8
Q ss_pred ccccccccc--ccccccccC---CCCCccccCCCCCcEEEccCCcCCC--CcchhccCCCCCceeeeecccccccCChhc
Q 045366 107 VGNLFKLQN--LTLTNNYFS---GKIPTNLSRCSNLVKFEASNNKLEG--EIPAEISNLLKFQILNIAKNHLKGQLPASI 179 (289)
Q Consensus 107 ~~~l~~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 179 (289)
|...+.|.. ++++.|... ..++.....+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444445554 555666332 1111122356788888888888876 4456667788888888888888754 223
Q ss_pred cCCC--CCCEEEccCccCcccCCc-------cccCCCCCcEEe
Q 045366 180 GNLS--TLQEINVNGNRLSGRIPS-------TRSHVRNLISFN 213 (289)
Q Consensus 180 ~~~~--~L~~L~l~~n~~~~~~~~-------~~~~~~~L~~L~ 213 (289)
..+. +|++|++++|.+.+..|. .+..+|+|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 788888888888765442 355667777765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=1.6e-06 Score=75.00 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=65.2
Q ss_pred hccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCC
Q 045366 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPN 256 (289)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 256 (289)
++..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +..+... +.++++|+.+.+.++.++ .++...|.++.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK 311 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCC
Confidence 3445555666665443 33233455666666776666433 3333333 677777887777777665 566666667777
Q ss_pred CcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 257 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
|+.+++..+ ++......|.+|++|+.+.+..
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 887777643 5534456677777777776643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=2.3e-09 Score=83.53 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=30.5
Q ss_pred cccCCCCCcEEEccCC-CCccc----CCcccccccccccccccccccCCC----CCccccCCCCCcEEEccCCcCC
Q 045366 82 FVGYLSFLRSINLVNN-SLRAE----IPHEVGNLFKLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 82 ~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 148 (289)
.+...+.|++|+|++| .+... +..++...++|++|+|++|.+... +...+...++|++|++++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3444566666666666 55422 222233344555555555544311 1222233344555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2.7e-09 Score=83.18 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCCCEEEccCccCccc----CCccccCCCCCcEEec--cCCcCccc-----CCCCCCCCCCCEEEccCCccc
Q 045366 181 NLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNV--GLNQFSGM-----FPPINNISSLEYIFIHKNRYH 243 (289)
Q Consensus 181 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~ 243 (289)
..+.|++|++++|.+++. +..++...++|++|++ ++|.+... ...+...++|++|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 334455555555554422 2333444455555555 44555321 111333456666666666553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=1.6e-08 Score=82.97 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=48.2
Q ss_pred cCCCCCCEEEccCccCcc--cCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEEEccCCcccccCch------h
Q 045366 180 GNLSTLQEINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPL------D 249 (289)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~------~ 249 (289)
.++++|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+.... +..+ +|++|++++|.+.+.+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456667777777777665 3344555667777777777777654211 3333 677777777777654442 1
Q ss_pred hhcCCCCCcEEE
Q 045366 250 IGVNLPNLRFFI 261 (289)
Q Consensus 250 ~~~~~~~L~~L~ 261 (289)
+...+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 233567777664
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=1.1e-05 Score=69.69 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=104.3
Q ss_pred cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366 130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL 209 (289)
Q Consensus 130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 209 (289)
.+....+|+.+.+..+ +.......|..+..|+.+.+..+ +......+|.++.+|+.+.+..+ +......+|..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566777776544 33234566778888888888765 44455567888889999988654 443456788889999
Q ss_pred cEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366 210 ISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282 (289)
Q Consensus 210 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 282 (289)
+.+.+.++.++.+... |.++.+|+.+.+..+ ++ .|....|.++.+|+.+.+..+ ++......|.+++.++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 9999988888776665 888999999998754 54 677777778899998888654 5544456677765443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=7.3e-07 Score=68.14 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=37.4
Q ss_pred cccccccccccccCCCCCccccCCCCCcEEEccCCc-CCCCcchhccCC----CCCceeeeeccc-ccccCChhccCCCC
Q 045366 111 FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LEGEIPAEISNL----LKFQILNIAKNH-LKGQLPASIGNLST 184 (289)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~ 184 (289)
..|+.||++++.++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345556665555543333334455555555555553 332222233332 245555555542 33322233444455
Q ss_pred CCEEEccCc
Q 045366 185 LQEINVNGN 193 (289)
Q Consensus 185 L~~L~l~~n 193 (289)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=6.4e-07 Score=68.44 Aligned_cols=84 Identities=8% Similarity=0.090 Sum_probs=51.7
Q ss_pred CCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCC----CCCcEEEccCCc-CCCCcchhccCCCC
Q 045366 87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRC----SNLVKFEASNNK-LEGEIPAEISNLLK 160 (289)
Q Consensus 87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~l~~ 160 (289)
-.|++|+++++.+++.--..+.++++|++|+|++|. ++..--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777765444456677777777777774 442222223332 357777777764 55333345566777
Q ss_pred Cceeeeeccc
Q 045366 161 FQILNIAKNH 170 (289)
Q Consensus 161 L~~L~l~~n~ 170 (289)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=1.8e-05 Score=61.51 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=71.8
Q ss_pred hhccCCCCCceeeeecc-ccccc----CChhccCCCCCCEEEccCccCcccCC----ccccCCCCCcEEeccCCcCccc-
Q 045366 153 AEISNLLKFQILNIAKN-HLKGQ----LPASIGNLSTLQEINVNGNRLSGRIP----STRSHVRNLISFNVGLNQFSGM- 222 (289)
Q Consensus 153 ~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~- 222 (289)
..+..-+.|++|+++++ .+.+. +.+++..-+.|+.|+|++|.+.+... .++..-++|++|+|++|.|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33455678888988875 66532 34556677888888998888875433 3344567888888888888622
Q ss_pred ----CCCCCCCCCCCEEEccCCc---ccccCchhhh---cCCCCCcEEEcccccc
Q 045366 223 ----FPPINNISSLEYIFIHKNR---YHGSLPLDIG---VNLPNLRFFIISGNNL 267 (289)
Q Consensus 223 ----~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~---~~~~~L~~L~Ls~n~l 267 (289)
...+...+.|++|+++++. +.+.....+. ..-++|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1125556678888887653 2221111111 2346778888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=2.2e-05 Score=61.07 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=4.5
Q ss_pred CCCcEEEccC
Q 045366 87 SFLRSINLVN 96 (289)
Q Consensus 87 ~~L~~L~L~~ 96 (289)
+.|++|+|++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 3444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00035 Score=50.56 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.7
Q ss_pred cEEeccCCcCc--ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 210 ISFNVGLNQFS--GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 210 ~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
..++.+++.++ .++..+. +++++|+|++|+++ .++...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47888888887 6554432 47899999999998 788888878899999999999775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.0006 Score=49.32 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=36.4
Q ss_pred EEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccC
Q 045366 67 GLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS 124 (289)
Q Consensus 67 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 124 (289)
.++.++++++ ..+|..+. ++++.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777776 23454333 45777777777777655566666777777777776554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.45 E-value=9.1 Score=25.58 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=5.4
Q ss_pred cccCCCCCcEEEc
Q 045366 130 NLSRCSNLVKFEA 142 (289)
Q Consensus 130 ~~~~l~~L~~L~l 142 (289)
+|.++.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.51 E-value=25 Score=23.36 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccccc
Q 045366 72 HQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN 121 (289)
Q Consensus 72 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 121 (289)
+.+++.+-...|..++.|+.+.+-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455556678899999999999875 44355678999999999998764
Done!