Query 045366
Match_columns 289
No_of_seqs 236 out of 3713
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 22:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045366.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045366hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 9.1E-38 6.6E-42 264.3 20.9 258 30-289 3-301 (313)
2 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 3E-30 2.1E-34 217.8 12.5 205 63-270 76-307 (313)
3 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 1.9E-26 1.4E-30 191.6 21.5 219 67-289 15-235 (284)
4 d1p9ag_ c.10.2.7 (G:) von Will 99.9 1.7E-25 1.3E-29 184.1 18.5 198 63-268 10-208 (266)
5 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 8.3E-25 6E-29 181.7 21.3 206 63-269 32-239 (284)
6 d1xkua_ c.10.2.7 (A:) Decorin 99.9 7.2E-25 5.2E-29 183.8 21.1 233 49-289 8-282 (305)
7 d1p9ag_ c.10.2.7 (G:) von Will 99.9 4.7E-25 3.4E-29 181.4 18.5 197 85-289 8-205 (266)
8 d1xkua_ c.10.2.7 (A:) Decorin 99.9 3.9E-21 2.8E-25 160.8 21.6 214 65-289 12-252 (305)
9 d2omza2 c.10.2.1 (A:33-416) In 99.9 1.3E-21 9.3E-26 168.5 18.3 213 63-289 66-383 (384)
10 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.9 6.2E-21 4.5E-25 154.2 15.3 218 67-288 12-234 (242)
11 d2omza2 c.10.2.1 (A:33-416) In 99.8 2.2E-20 1.6E-24 160.6 18.6 212 63-289 44-361 (384)
12 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 1.7E-20 1.2E-24 150.3 15.2 207 64-288 20-226 (227)
13 d1h6ta2 c.10.2.1 (A:31-240) In 99.8 3.5E-19 2.6E-23 140.7 14.6 166 109-288 44-209 (210)
14 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 9E-19 6.5E-23 140.0 16.3 186 63-264 41-226 (227)
15 d1h6ta2 c.10.2.1 (A:31-240) In 99.8 5.4E-19 3.9E-23 139.7 14.4 180 69-264 30-209 (210)
16 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.8 2.8E-19 2E-23 144.3 11.9 199 63-263 29-233 (242)
17 d2omxa2 c.10.2.1 (A:37-235) In 99.8 1.8E-18 1.3E-22 135.5 15.9 162 109-284 38-199 (199)
18 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.8 2.9E-19 2.1E-23 139.2 11.2 129 90-221 11-140 (192)
19 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.8 1.3E-19 9.7E-24 141.2 7.5 170 67-242 12-182 (192)
20 d2omxa2 c.10.2.1 (A:37-235) In 99.8 3E-18 2.2E-22 134.2 14.6 177 68-260 23-199 (199)
21 d1jl5a_ c.10.2.6 (A:) Leucine 99.7 4.7E-15 3.4E-19 125.1 22.0 52 229-289 283-334 (353)
22 d1a9na_ c.10.2.4 (A:) Spliceso 99.6 2.3E-16 1.7E-20 118.9 8.1 127 83-213 14-145 (162)
23 d2astb2 c.10.1.3 (B:2136-2419) 99.6 4E-17 2.9E-21 134.7 2.2 197 85-282 44-252 (284)
24 d1dcea3 c.10.2.2 (A:444-567) R 99.6 1.7E-15 1.2E-19 108.8 10.6 101 91-196 2-103 (124)
25 d1dcea3 c.10.2.2 (A:444-567) R 99.6 1.8E-15 1.3E-19 108.7 10.1 102 114-220 1-103 (124)
26 d1a9na_ c.10.2.4 (A:) Spliceso 99.6 8.7E-16 6.4E-20 115.7 8.7 124 134-261 17-145 (162)
27 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.6 5.4E-17 3.9E-21 137.6 1.8 227 63-289 31-312 (344)
28 d1jl5a_ c.10.2.6 (A:) Leucine 99.6 8.2E-14 5.9E-18 117.4 19.5 70 206-287 283-352 (353)
29 d2astb2 c.10.1.3 (B:2136-2419) 99.6 2.6E-16 1.9E-20 129.8 1.8 213 63-279 46-270 (284)
30 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.5 7.4E-17 5.4E-21 141.0 -3.2 62 228-289 338-407 (460)
31 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 4.7E-15 3.5E-19 125.4 3.0 211 79-289 23-283 (344)
32 d1m9la_ c.10.3.1 (A:) Outer ar 99.5 5.8E-16 4.2E-20 120.6 -3.3 111 153-268 42-153 (198)
33 d1m9la_ c.10.3.1 (A:) Outer ar 99.4 1.1E-15 7.7E-20 119.2 -4.4 115 79-198 40-155 (198)
34 d2ifga3 c.10.2.7 (A:36-191) Hi 99.4 1.4E-12 1E-16 97.2 11.0 91 152-242 24-115 (156)
35 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.4 2.4E-14 1.7E-18 124.8 -0.7 106 183-289 312-436 (460)
36 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 4.4E-12 3.2E-16 94.4 11.3 105 114-220 11-116 (156)
37 d1koha1 c.10.2.3 (A:201-362) m 98.6 8.1E-10 5.9E-14 82.4 -1.6 84 178-261 60-152 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 98.6 2.1E-09 1.5E-13 80.0 -0.8 41 156-196 88-128 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 98.1 6.4E-07 4.6E-11 66.5 2.4 110 156-266 12-142 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.9 1.2E-06 8.7E-11 65.0 1.7 9 87-95 15-23 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 97.4 1E-05 7.4E-10 59.6 0.1 10 87-96 17-26 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 97.4 1.2E-05 9E-10 59.2 0.5 112 155-266 13-143 (166)
No 1
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=100.00 E-value=9.1e-38 Score=264.34 Aligned_cols=258 Identities=28% Similarity=0.444 Sum_probs=218.0
Q ss_pred cChHhHHHHHh----------cCCCCCCCCCCC--cccceeCCCC--CeeEEEeccCCCCCC--cCCccccCCCCCcEEE
Q 045366 30 ANEADRLSLLA----------MNSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIRG--FLSPFVGYLSFLRSIN 93 (289)
Q Consensus 30 ~~~~~~~~l~~----------~~~w~~~~~~c~--~~~~~c~~~~--~~v~~l~l~~~~~~~--~~~~~~~~l~~L~~L~ 93 (289)
|.++|+.|+++ +++|..++++|. |.||+|+..+ .+|+.|+|+++.+.+ .+|+.++++++|++|+
T Consensus 3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~ 82 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccc
Confidence 67788888876 678999999995 9999998754 379999999999987 4789999999999999
Q ss_pred ccC-CCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366 94 LVN-NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK 172 (289)
Q Consensus 94 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (289)
|++ |++.|.+|..|.++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+..++.++++++++|.+.
T Consensus 83 Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~ 162 (313)
T d1ogqa_ 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccc
Confidence 986 8999999999999999999999999999888888899999999999999998899999999999999999999999
Q ss_pred ccCChhccCCCCC-CEEEccCccCcccCCc-----------------------cccCCCCCcEEeccCCcCcccCCCCCC
Q 045366 173 GQLPASIGNLSTL-QEINVNGNRLSGRIPS-----------------------TRSHVRNLISFNVGLNQFSGMFPPINN 228 (289)
Q Consensus 173 ~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~-----------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~ 228 (289)
+.+|..+..+..+ +.+++++|.+++..|. .+..+++++.+++++|.+.+.++.+..
T Consensus 163 ~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 242 (313)
T d1ogqa_ 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888877765 7777777776554443 344556777888888877776666777
Q ss_pred CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
++++++|++++|+++|.+|..+. ++++|++|+|++|+++|.+|+ ++++++|+.+++++|
T Consensus 243 ~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N 301 (313)
T d1ogqa_ 243 SKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred ccccccccCccCeecccCChHHh-CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence 78888888888888888887766 788888888888888888875 577788888888776
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.96 E-value=3e-30 Score=217.84 Aligned_cols=205 Identities=23% Similarity=0.374 Sum_probs=179.4
Q ss_pred CeeEEEeccC-CCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRH-QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
+.++.|++++ |.+.+.+|+.++++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+..++.+++++
T Consensus 76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~ 155 (313)
T d1ogqa_ 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence 6899999986 789999999999999999999999999998899899999999999999999989999999999999999
Q ss_pred ccCCcCCCCcchhccCCCCC-ceeeeecccccc-----------------------cCChhccCCCCCCEEEccCccCcc
Q 045366 142 ASNNKLEGEIPAEISNLLKF-QILNIAKNHLKG-----------------------QLPASIGNLSTLQEINVNGNRLSG 197 (289)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~~~~-----------------------~~~~~~~~~~~L~~L~l~~n~~~~ 197 (289)
+++|.+.+.+|..+..+..+ +.+++++|++.+ ..|..+..+++++.+++++|.+.+
T Consensus 156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 235 (313)
T d1ogqa_ 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999988888888887765 777777776543 344556677889999999999986
Q ss_pred cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc-cccc
Q 045366 198 RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN-LTGS 270 (289)
Q Consensus 198 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~ 270 (289)
.++ .++.+++|+.|++++|+++|.+|. +.++++|++|++++|+++|.+|. .. ++.+|+.+++++|+ +.|.
T Consensus 236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~-~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG-NLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST-TGGGSCGGGTCSSSEEEST
T ss_pred ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc-cCCCCCHHHhCCCccccCC
Confidence 554 688899999999999999987776 99999999999999999999985 33 78899999999996 5654
No 3
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=1.9e-26 Score=191.62 Aligned_cols=219 Identities=20% Similarity=0.207 Sum_probs=167.7
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc-CC
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS-NN 145 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n 145 (289)
.+++++++++. +|..+. +.+++|+|++|+++...+.+|.++++|++|++++|.+....+..+..++.++.+... .+
T Consensus 15 ~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34566666653 354443 567888888888886666778888888888888888876666777777888887764 45
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 225 (289)
.+....+..|+.+++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|.+.++.+.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence 56555577788888888888888888766666777788888888888888866667788888888888888888877665
Q ss_pred -CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 226 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+.++++|+++++++|++++..|.. +..++++++|++++|.+.+..+..|+++++|++|++++|
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred hhccccccchhhhhhccccccChhH-hhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence 778888888888888887544544 447888888888888888777778888888888888877
No 4
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=1.7e-25 Score=184.08 Aligned_cols=198 Identities=18% Similarity=0.251 Sum_probs=171.9
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
....+++.++++++. +|+.+. +++++|+|++|++++..+.+|.++++|++|++++|.++ .++ .+..+++|++|++
T Consensus 10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL 84 (266)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence 345567999998885 566554 67999999999999777788999999999999999998 454 3568899999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
++|++. ..+..+..+++|++|+++++.+....+..+..+.+++++++++|.+....+..+..+++++.+++++|++++.
T Consensus 85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 999997 5577888999999999999999877778888999999999999999877777888899999999999999988
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++. +..+++|++|++++|+++ .+|+.++ .+++|+.|+|++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCCCC
Confidence 776 888999999999999998 8998888 8999999999999765
No 5
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=8.3e-25 Score=181.65 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=184.7
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccc-ccccCCCCCccccCCCCCcEEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLT-NNYFSGKIPTNLSRCSNLVKFE 141 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 141 (289)
..++.|++++|.|++..+..|..+++|++|++++|++....+..+.++..++.++.. .+.++...+..+.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 467999999999998777789999999999999999998888888889999998765 5667766688899999999999
Q ss_pred ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
+++|.+....+..+...++|+.+++.+|.+++..+..|..+++|++|++++|.+....+.++..+++|+++++++|.+.+
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 99999987777788899999999999999997777889999999999999999998788899999999999999999998
Q ss_pred cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366 222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269 (289)
Q Consensus 222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 269 (289)
..+. +..++++++|++++|++. .++...+..+++|++|++++|.+..
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCCC
Confidence 8776 999999999999999998 5666666689999999999998873
No 6
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.93 E-value=7.2e-25 Score=183.81 Aligned_cols=233 Identities=18% Similarity=0.309 Sum_probs=184.4
Q ss_pred CCCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccc
Q 045366 49 NLCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLT 119 (289)
Q Consensus 49 ~~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 119 (289)
..|.+.++.|... .+.++.|++++|.|+...+..|..+++|++|++++|.+....|.+|.++++|++|+++
T Consensus 8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 3467777778642 2678999999999988776789999999999999999998778899999999999999
Q ss_pred ccccCCCCCccccCCCCCcEEEccCCcCCCCcc--------------------------hhccCCCCCceeeeecccccc
Q 045366 120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP--------------------------AEISNLLKFQILNIAKNHLKG 173 (289)
Q Consensus 120 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------------~~~~~l~~L~~L~l~~n~~~~ 173 (289)
+|+++ .+|..+ ...++.|++..|.+....+ ..+..+++|+++++.+|.+.
T Consensus 88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~- 163 (305)
T d1xkua_ 88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 163 (305)
T ss_dssp SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence 99998 566443 2466777777766543222 23455677888888888776
Q ss_pred cCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhc
Q 045366 174 QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGV 252 (289)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~ 252 (289)
.+|.. ..+++++|++++|...+..+..+..++.++.|++++|.+.+..+. +.++++|++|++++|+++ .+|.++.
T Consensus 164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~- 239 (305)
T d1xkua_ 164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA- 239 (305)
T ss_dssp SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-
T ss_pred ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc-
Confidence 34433 367889999999988878888889999999999999999988776 788899999999999997 7887765
Q ss_pred CCCCCcEEEccccccccccCcc------ccCCCCCCeEeCcCC
Q 045366 253 NLPNLRFFIISGNNLTGSLQDS------LSNTTNLHKLDINRN 289 (289)
Q Consensus 253 ~~~~L~~L~Ls~n~l~~~~~~~------~~~~~~L~~L~l~~N 289 (289)
.+++|++|++++|+|+...... ....++|+.|+|++|
T Consensus 240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N 282 (305)
T d1xkua_ 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282 (305)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence 8999999999999998433233 356778999999887
No 7
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=4.7e-25 Score=181.45 Aligned_cols=197 Identities=18% Similarity=0.222 Sum_probs=172.4
Q ss_pred CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366 85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL 164 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (289)
+...+.+++.++++++ .+|..+. +++++|+|++|.+++..+..|..+++|++|++++|+++ .++ .++.+++|++|
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccc
Confidence 4456677899999998 4676653 58999999999999655678999999999999999997 444 46789999999
Q ss_pred eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCccc
Q 045366 165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYH 243 (289)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~ 243 (289)
++++|++.. .+..+..+++|+.+++++|.+....+..+..+.+++++++++|.+.+..+. +..+++++++++++|+++
T Consensus 83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 999999984 566788999999999999999877778888999999999999999988776 788899999999999998
Q ss_pred ccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
.++...+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|
T Consensus 162 -~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred -ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence 566665658999999999999999 88988999999999999998
No 8
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.88 E-value=3.9e-21 Score=160.77 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=173.0
Q ss_pred eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366 65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 144 (289)
.+.+|.++++++. +|..+. +.+++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus 12 ~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 12 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 3568999988885 465554 6899999999999966667899999999999999999977788899999999999999
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccc--------------------------cCChhccCCCCCCEEEccCccCccc
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKG--------------------------QLPASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------------~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
|++. .+|.. ....++.|++.+|.+.+ ..+..+..+++|+.+++++|.+. .
T Consensus 89 n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~ 164 (305)
T d1xkua_ 89 NQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 164 (305)
T ss_dssp SCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence 9997 45543 23466667766665432 12334566778899999998887 4
Q ss_pred CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
+|..+ ++++++|++++|...+..+. +.+++.+++|++++|.+.+ ++...+.++++|++|+|++|+++ .+|..+..
T Consensus 165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~ 240 (305)
T d1xkua_ 165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 240 (305)
T ss_dssp CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc-cccccccccccceeeeccccccc-cccccccc
Confidence 55443 57899999999998877665 8888999999999999984 44455558999999999999998 67888999
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|++|++++|
T Consensus 241 l~~L~~L~Ls~N 252 (305)
T d1xkua_ 241 HKYIQVVYLHNN 252 (305)
T ss_dssp CSSCCEEECCSS
T ss_pred ccCCCEEECCCC
Confidence 999999999987
No 9
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.87 E-value=1.3e-21 Score=168.46 Aligned_cols=213 Identities=22% Similarity=0.364 Sum_probs=149.6
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC---------------
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI--------------- 127 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 127 (289)
++++.|++++|.+++.. .++++++|++|++++|++.+.. .+.++++|+.|+++++.+++..
T Consensus 66 ~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (384)
T d2omza2 66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141 (384)
T ss_dssp TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred CCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 67899999999988753 3888999999999999987533 3778888888888776543110
Q ss_pred ------------------------------------------------Cccc----------------------cCCCCC
Q 045366 128 ------------------------------------------------PTNL----------------------SRCSNL 137 (289)
Q Consensus 128 ------------------------------------------------~~~~----------------------~~l~~L 137 (289)
...+ ..+++|
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L 221 (384)
T d2omza2 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221 (384)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCC
Confidence 0111 123445
Q ss_pred cEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccC------------------
Q 045366 138 VKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRI------------------ 199 (289)
Q Consensus 138 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------ 199 (289)
++|++++|.+.. + ..+..+++|+.+++.+|.+.+.. .+..+++|++++++++.+.+..
T Consensus 222 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l 297 (384)
T d2omza2 222 DELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297 (384)
T ss_dssp CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred CEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcccccccccccccccccc
Confidence 555555555542 2 24556677777777777766432 3566777777777777655321
Q ss_pred --CccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366 200 --PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277 (289)
Q Consensus 200 --~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 277 (289)
...+..+++++.+++++|.+++.. ++..+++|++|++++|+++ .++ .+. ++++|++|++++|++++..| +.+
T Consensus 298 ~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~-~l~~L~~L~l~~N~l~~l~~--l~~ 371 (384)
T d2omza2 298 EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS-DVS-SLA-NLTNINWLSAGHNQISDLTP--LAN 371 (384)
T ss_dssp SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCCEEECCSSCCCBCGG--GTT
T ss_pred ccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCC-CCh-hHc-CCCCCCEEECCCCcCCCChh--hcc
Confidence 123455678888888888887653 3677889999999999987 454 444 78999999999999986544 889
Q ss_pred CCCCCeEeCcCC
Q 045366 278 TTNLHKLDINRN 289 (289)
Q Consensus 278 ~~~L~~L~l~~N 289 (289)
+++|+.|+|++|
T Consensus 372 l~~L~~L~L~~N 383 (384)
T d2omza2 372 LTRITQLGLNDQ 383 (384)
T ss_dssp CTTCSEEECCCE
T ss_pred CCCCCEeeCCCC
Confidence 999999999987
No 10
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=6.2e-21 Score=154.19 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=165.9
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC-CccccCCCCCcEEEccC-
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI-PTNLSRCSNLVKFEASN- 144 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~- 144 (289)
.+++++.+++. +|+.+. +++++|++++|+++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+..
T Consensus 12 ~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 12 VFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp EEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred EEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 56666777763 455443 57999999999998766678999999999999999887543 45688899999998864
Q ss_pred CcCCCCcchhccCCCCCceeeeecccccccCCh-hccCCCCCCEEEccCccCcccCCccccCC-CCCcEEeccCCcCccc
Q 045366 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA-SIGNLSTLQEINVNGNRLSGRIPSTRSHV-RNLISFNVGLNQFSGM 222 (289)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~ 222 (289)
|.+....+..|..+++|+++++.+|.+....+. .+..+..+..+...++.+....+..+..+ ..++.+++.+|.++.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i 168 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 677766678899999999999999988744332 23344555555666667775555666655 4889999999999987
Q ss_pred CCCCCCCCCCCEE-EccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 223 FPPINNISSLEYI-FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 223 ~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
.......+++.++ .+++|+++ .+|...|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus 169 ~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 169 HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 7764445566555 56777887 78888777899999999999999955556788888888777643
No 11
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.85 E-value=2.2e-20 Score=160.63 Aligned_cols=212 Identities=27% Similarity=0.425 Sum_probs=151.8
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.++++|++++++|+.. +.+..+++|++|++++|++++. + .+.++++|++|++++|.+.+ ++ .+..+++|+.+++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-cc-ccccccccccccc
Confidence 5789999999999764 4578899999999999999854 3 38999999999999999984 43 3788999999999
Q ss_pred cCCcCCCCcc---------------------------------------------------------------hhccCCC
Q 045366 143 SNNKLEGEIP---------------------------------------------------------------AEISNLL 159 (289)
Q Consensus 143 ~~n~~~~~~~---------------------------------------------------------------~~~~~l~ 159 (289)
+++.+.+..+ ..+..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (384)
T d2omza2 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197 (384)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 8876542110 1112233
Q ss_pred ----------------------CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCC
Q 045366 160 ----------------------KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN 217 (289)
Q Consensus 160 ----------------------~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 217 (289)
+|++|++.+|.+.+ ++.+..+++|+.+++++|.+++.. .++.+++|++++++++
T Consensus 198 ~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~ 273 (384)
T d2omza2 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGAN 273 (384)
T ss_dssp TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred ccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccCc
Confidence 44444454444442 234556677777777777776432 3666778888888877
Q ss_pred cCcccCC---------------------CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc
Q 045366 218 QFSGMFP---------------------PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS 276 (289)
Q Consensus 218 ~l~~~~~---------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 276 (289)
.+.+..+ .+..++++++|++++|++++ ++. + ..+++|++|++++|++++ ++ .++
T Consensus 274 ~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~~-l-~~l~~L~~L~L~~n~l~~-l~-~l~ 348 (384)
T d2omza2 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-V-SSLTKLQRLFFANNKVSD-VS-SLA 348 (384)
T ss_dssp CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-G-GGCTTCCEEECCSSCCCC-CG-GGG
T ss_pred ccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC-Ccc-c-ccCCCCCEEECCCCCCCC-Ch-hHc
Confidence 7654321 13455677888888888874 332 3 378999999999999884 44 588
Q ss_pred CCCCCCeEeCcCC
Q 045366 277 NTTNLHKLDINRN 289 (289)
Q Consensus 277 ~~~~L~~L~l~~N 289 (289)
++++|++|++++|
T Consensus 349 ~l~~L~~L~l~~N 361 (384)
T d2omza2 349 NLTNINWLSAGHN 361 (384)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 9999999999987
No 12
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.84 E-value=1.7e-20 Score=150.28 Aligned_cols=207 Identities=21% Similarity=0.338 Sum_probs=163.1
Q ss_pred eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366 64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143 (289)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 143 (289)
++..++++.+.+.+.. .++.+.+|+.|++.+|+++. + ..+..+++|++|++++|.+.+.. .+..++++++++++
T Consensus 20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~ 93 (227)
T d1h6ua2 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELS 93 (227)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECC
T ss_pred HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccc
Confidence 3445667666666543 34567889999999999984 4 35888999999999999987433 37889999999999
Q ss_pred CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccC
Q 045366 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF 223 (289)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 223 (289)
+|.++ .+ ..+..+++|++++++++...+. ..+...+.++.+.++++.+... ..+...++|+++++++|.+.+..
T Consensus 94 ~n~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~ 167 (227)
T d1h6ua2 94 GNPLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT 167 (227)
T ss_dssp SCCCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG
T ss_pred ccccc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch
Confidence 99887 33 3577899999999998877643 3466788999999998887643 34677889999999999887543
Q ss_pred CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (289)
.+.++++|++|++++|+++ .++. + .++++|++|++++|++++ ++. ++++++|+.|++++
T Consensus 168 -~l~~l~~L~~L~Ls~n~l~-~l~~-l-~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 168 -PLANLSKLTTLKADDNKIS-DISP-L-ASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp -GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred -hhcccccceecccCCCccC-CChh-h-cCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence 3778899999999999997 4543 3 378999999999999984 443 89999999999874
No 13
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.80 E-value=3.5e-19 Score=140.71 Aligned_cols=166 Identities=20% Similarity=0.349 Sum_probs=104.6
Q ss_pred cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188 (289)
Q Consensus 109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 188 (289)
.+.+|++|++++|.+. .++ .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.+
T Consensus 44 ~L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred HhcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence 4556666666666665 222 255566666666666666532 2 24566666666666666653 23 45666777777
Q ss_pred EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++++|.+.. ...+..+++++.+++++|.+++.. .+..+++|+++++++|+++ .+++ +. ++++|++|++++|+++
T Consensus 118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~-l~-~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNHIS 191 (210)
T ss_dssp ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC
T ss_pred ccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccc-cccc-cc-CCCCCCEEECCCCCCC
Confidence 777666552 234566677777777777766422 2455667777888877776 3332 33 6778888888888777
Q ss_pred cccCccccCCCCCCeEeCcC
Q 045366 269 GSLQDSLSNTTNLHKLDINR 288 (289)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~ 288 (289)
.++ .+.++++|++|+|++
T Consensus 192 -~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 -DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp -BCG-GGTTCTTCSEEEEEE
T ss_pred -CCh-hhcCCCCCCEEEccC
Confidence 344 477788888888753
No 14
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.80 E-value=9e-19 Score=140.04 Aligned_cols=186 Identities=16% Similarity=0.315 Sum_probs=155.0
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 142 (289)
.+++.+++.+++++.. +.+.++++|++|++++|.+.+.. .+.++++++++++++|.++ .++ .+..+++|+++++
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l 114 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL 114 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccccccccccccc
Confidence 5789999999999864 35889999999999999998543 3889999999999999987 444 5788999999999
Q ss_pred cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222 (289)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 222 (289)
+++...+. ..+...+.++.+.++.+.+... ..+...++|+++++++|.+.+. ..++.+++|++|++++|.++++
T Consensus 115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l 188 (227)
T d1h6ua2 115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI 188 (227)
T ss_dssp TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred cccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC
Confidence 99987643 3466788999999998887643 3467889999999999988743 3478899999999999999874
Q ss_pred CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccc
Q 045366 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264 (289)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 264 (289)
+.+.++++|++|++++|+++ .+++ + .++++|+.|++++
T Consensus 189 -~~l~~l~~L~~L~Ls~N~lt-~i~~-l-~~l~~L~~L~lsn 226 (227)
T d1h6ua2 189 -SPLASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTLTN 226 (227)
T ss_dssp -GGGGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEEEE
T ss_pred -hhhcCCCCCCEEECcCCcCC-CCcc-c-ccCCCCCEEEeeC
Confidence 44788899999999999998 4553 3 4899999999984
No 15
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.80 E-value=5.4e-19 Score=139.66 Aligned_cols=180 Identities=19% Similarity=0.341 Sum_probs=137.4
Q ss_pred eccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCC
Q 045366 69 DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148 (289)
Q Consensus 69 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 148 (289)
.+..+.+.+.++. ..+..|++|++++|.++.. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence 4455555444332 2456788899999888743 2 47788899999999998874 44 3677889999999999887
Q ss_pred CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCC
Q 045366 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN 228 (289)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 228 (289)
.++ .+..+++|+.|++.+|.+.. ...+..++.++.+++++|.+++ +..+..+++|+++++++|.+++.. ++.+
T Consensus 104 -~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-~l~~ 176 (210)
T d1h6ta2 104 -DLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-PLAG 176 (210)
T ss_dssp -CGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-GGTT
T ss_pred -ccc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc-cccC
Confidence 344 57888999999999888763 3457788899999999998874 345677889999999999988643 4778
Q ss_pred CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccc
Q 045366 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264 (289)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 264 (289)
+++|++|++++|.++ .++ .+. ++++|++|+|++
T Consensus 177 l~~L~~L~Ls~N~i~-~l~-~l~-~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNHIS-DLR-ALA-GLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSCCC-BCG-GGT-TCTTCSEEEEEE
T ss_pred CCCCCEEECCCCCCC-CCh-hhc-CCCCCCEEEccC
Confidence 889999999999987 565 344 889999999875
No 16
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=2.8e-19 Score=144.31 Aligned_cols=199 Identities=19% Similarity=0.093 Sum_probs=152.2
Q ss_pred CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccc-cccCCCCCccccCCCCCcEE
Q 045366 63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKF 140 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 140 (289)
.++++|++++|.++...+..|.++++|++|++++|.+... .+.+|.+++.++++++.. |.+....+..+.++++|+++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999877677899999999999999998754 456789999999999864 66776777889999999999
Q ss_pred EccCCcCCCCcc-hhccCCCCCceeeeecccccccCChhccCCC-CCCEEEccCccCcccCCccccCCCCCcEE-eccCC
Q 045366 141 EASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQLPASIGNLS-TLQEINVNGNRLSGRIPSTRSHVRNLISF-NVGLN 217 (289)
Q Consensus 141 ~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~l~~n 217 (289)
++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++++|.++...+.. ...++++.+ ++++|
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n 187 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNN 187 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCT
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhcccccccc
Confidence 999999864322 2234455566666666677755556666654 7888999999998544444 445565555 56888
Q ss_pred cCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc
Q 045366 218 QFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263 (289)
Q Consensus 218 ~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls 263 (289)
.++.+++. +.++++|++|++++|+++ .+|...+.++++|+.+++.
T Consensus 188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEE
T ss_pred ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCC
Confidence 89887665 899999999999999998 7877655566666655554
No 17
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.79 E-value=1.8e-18 Score=135.50 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=103.8
Q ss_pred cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188 (289)
Q Consensus 109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 188 (289)
.+.++++|++++|.+. .++ .+..+++|++|++++|++++.. .++.+++|++|++++|.+.. ++ .+..++.|+.+
T Consensus 38 ~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccc
Confidence 4556666666666665 332 3555666666666666665332 26666667777776666552 22 35667777777
Q ss_pred EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 268 (289)
+++++..... ..+..+++|+.+++++|.+... +.+..++++++|++.+|+++ .++ .+. ++++|++|++++|+++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~-~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT-DLK-PLA-NLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhccc-cccccccccccccccccccc-CCc-ccc-CCCCCCEEECCCCCCC
Confidence 7776666532 3356677777777777776643 33666778888888888776 333 233 7788888888888887
Q ss_pred cccCccccCCCCCCeE
Q 045366 269 GSLQDSLSNTTNLHKL 284 (289)
Q Consensus 269 ~~~~~~~~~~~~L~~L 284 (289)
+ ++ .++++++|+.|
T Consensus 186 ~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 186 D-IS-VLAKLTNLESL 199 (199)
T ss_dssp C-CG-GGGGCTTCSEE
T ss_pred C-Cc-cccCCCCCCcC
Confidence 4 43 47788888765
No 18
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.79 E-value=2.9e-19 Score=139.20 Aligned_cols=129 Identities=25% Similarity=0.387 Sum_probs=82.8
Q ss_pred cEEEccCCCCcccCCcccccccccccccccccccCCC-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366 90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168 (289)
Q Consensus 90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (289)
+.++.++++++ .+|..+. +++++|+|++|.|++. .+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45667777766 4555442 4667777777776542 344556666777777777766666666666666677777777
Q ss_pred ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221 (289)
Q Consensus 169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (289)
|++....+.+|.++++|++|++++|.++...+++|..+++|+++++++|.+..
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 76665555666666666666666666665555666666666666666666553
No 19
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.78 E-value=1.3e-19 Score=141.17 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=127.6
Q ss_pred EEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366 67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145 (289)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 145 (289)
.+++++++++. +|..+. +++++|+|++|+++.. .+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 57888888875 455553 6899999999999754 4667889999999999999999888889999999999999999
Q ss_pred cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225 (289)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 225 (289)
++....+..|..+++|++|++++|+++...+.+|..+++|+++++++|.+.... ....-...++.+.+..+.++...|
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~p- 166 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGAP- 166 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCSS-
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCCC-
Confidence 999777888999999999999999999888888999999999999999886322 111111123444444455443222
Q ss_pred CCCCCCCCEEEccCCcc
Q 045366 226 INNISSLEYIFIHKNRY 242 (289)
Q Consensus 226 ~~~~~~L~~L~l~~n~l 242 (289)
..+..++.++++.+.+
T Consensus 167 -~~l~~~~l~~L~~n~l 182 (192)
T d1w8aa_ 167 -SKVRDVQIKDLPHSEF 182 (192)
T ss_dssp -TTTTTSBGGGSCTTTC
T ss_pred -hhhcCCEeeecCHhhC
Confidence 1223344445555544
No 20
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.77 E-value=3e-18 Score=134.18 Aligned_cols=177 Identities=23% Similarity=0.362 Sum_probs=130.9
Q ss_pred EeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcC
Q 045366 68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 147 (289)
Q Consensus 68 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 147 (289)
..+..+.+++..+ ...+.++++|+++++.++. + +.+..+++|++|++++|.+++ +++ +..+++|++|++++|.+
T Consensus 23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccccccccccc
Confidence 4455555554332 2346778888888888874 3 347778888999998888874 333 78888899999988887
Q ss_pred CCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCC
Q 045366 148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN 227 (289)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 227 (289)
.. ++ .+..++.|+.|+++++..... ..+..+++|+.+++++|.+.. + ..+..+++++++++.+|.+++.. ++.
T Consensus 97 ~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~-~l~ 169 (199)
T d2omxa2 97 AD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK-PLA 169 (199)
T ss_dssp CC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGT
T ss_pred cc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc-ccc
Confidence 63 33 477888899999888877643 346788889999999888863 3 35778889999999999888653 477
Q ss_pred CCCCCCEEEccCCcccccCchhhhcCCCCCcEE
Q 045366 228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF 260 (289)
Q Consensus 228 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 260 (289)
++++|++|++++|+++ .++ .+. ++++|++|
T Consensus 170 ~l~~L~~L~ls~N~i~-~i~-~l~-~L~~L~~L 199 (199)
T d2omxa2 170 NLTTLERLDISSNKVS-DIS-VLA-KLTNLESL 199 (199)
T ss_dssp TCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEE
T ss_pred CCCCCCEEECCCCCCC-CCc-ccc-CCCCCCcC
Confidence 8889999999999887 454 343 77888765
No 21
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.68 E-value=4.7e-15 Score=125.15 Aligned_cols=52 Identities=31% Similarity=0.396 Sum_probs=36.3
Q ss_pred CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N 289 (289)
+++|++|++++|+++ .+|. .+++|+.|++++|+++ .+|+. +++|++|++++|
T Consensus 283 ~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N 334 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN 334 (353)
T ss_dssp CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred CCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence 357788888888776 5653 3567888888888777 55543 356778888776
No 22
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=2.3e-16 Score=118.90 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=70.6
Q ss_pred ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366 83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162 (289)
Q Consensus 83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (289)
+.+...+++|+|++|+++. ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 3445556666666666653 3444555666666666666665 332 355666666666666666533333445566666
Q ss_pred eeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCc----cccCCCCCcEEe
Q 045366 163 ILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPS----TRSHVRNLISFN 213 (289)
Q Consensus 163 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~ 213 (289)
+|++++|.+..... ..+..+++|+++++++|.++. .|. .++.+|+|+.||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 66666666653211 234555666666666665542 221 244455555554
No 23
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.62 E-value=4e-17 Score=134.74 Aligned_cols=197 Identities=18% Similarity=0.251 Sum_probs=117.1
Q ss_pred CCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC-cCCCC-cchhccCCCCC
Q 045366 85 YLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGE-IPAEISNLLKF 161 (289)
Q Consensus 85 ~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L 161 (289)
....|++|+++++.+... ++..+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +...+..+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 345678888887777543 3344567788888888888776555666777778888888774 44321 12233567788
Q ss_pred ceeeeeccc-cccc-CChhcc-CCCCCCEEEccCcc--Cccc-CCccccCCCCCcEEeccCCc-CcccCC-CCCCCCCCC
Q 045366 162 QILNIAKNH-LKGQ-LPASIG-NLSTLQEINVNGNR--LSGR-IPSTRSHVRNLISFNVGLNQ-FSGMFP-PINNISSLE 233 (289)
Q Consensus 162 ~~L~l~~n~-~~~~-~~~~~~-~~~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~~L~ 233 (289)
++|+++++. +++. +...+. ..+.|+.|+++++. +++. +......+++|++|++++|. +++... .+.++++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 888887753 3321 122222 34678888887642 3321 22233456788888887754 443322 366777888
Q ss_pred EEEccCC-cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366 234 YIFIHKN-RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282 (289)
Q Consensus 234 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 282 (289)
+|++++| .+++.....+. ++++|+.|+++++--.+.++.....+|+|+
T Consensus 204 ~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp EEECTTCTTCCGGGGGGGG-GCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred EEECCCCCCCChHHHHHHh-cCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence 8888875 45544344444 677888888877722222333334455544
No 24
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.61 E-value=1.7e-15 Score=108.80 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=51.3
Q ss_pred EEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccc
Q 045366 91 SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH 170 (289)
Q Consensus 91 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 170 (289)
.|++++|+++ .++ .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++. ++ .++.+++|++|++++|+
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence 4555555554 222 2455555555555555554 444455555555555555555542 22 35555555555555555
Q ss_pred ccccC-ChhccCCCCCCEEEccCccCc
Q 045366 171 LKGQL-PASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 171 ~~~~~-~~~~~~~~~L~~L~l~~n~~~ 196 (289)
+.+.. ...+..+++|+.+++++|.++
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 54321 133445555555555555554
No 25
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.61 E-value=1.8e-15 Score=108.68 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=56.1
Q ss_pred ccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCc
Q 045366 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGN 193 (289)
Q Consensus 114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 193 (289)
|+|++++|.++ .++ .+..+++|++|++++|++. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+++++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 35666666665 444 2556666666666666665 445556666666666666666653 22 3555566666666666
Q ss_pred cCcccC-CccccCCCCCcEEeccCCcCc
Q 045366 194 RLSGRI-PSTRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 194 ~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 220 (289)
.+.... ...++.+++|+++++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 555321 133444455555555555444
No 26
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=8.7e-16 Score=115.69 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=55.3
Q ss_pred CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEe
Q 045366 134 CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN 213 (289)
Q Consensus 134 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 213 (289)
..++++|++++|+++ .++..+..+++|+.|++++|.+... +.+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence 334444444444444 2233334444444444444444421 1234444555555555554433233334445555555
Q ss_pred ccCCcCcccCC--CCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEE
Q 045366 214 VGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFI 261 (289)
Q Consensus 214 l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~ 261 (289)
+++|.+..+.. .+..+++|++|++++|.++ ..+. ..+..+|+|+.||
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred eccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 55555443322 1444555555555555554 2221 1222455666554
No 27
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.60 E-value=5.4e-17 Score=137.57 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=161.6
Q ss_pred CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCccc----------CCcccccccccccccccccccCCC--
Q 045366 63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRAE----------IPHEVGNLFKLQNLTLTNNYFSGK-- 126 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~-- 126 (289)
..++.|++++|.+... +...+...+.|+.++++++..... +..++...++|++|++++|.+...
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 110 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence 5688999999987542 445677789999999998765421 122345578899999999988743
Q ss_pred --CCccccCCCCCcEEEccCCcCCCCcchh-------------ccCCCCCceeeeeccccccc----CChhccCCCCCCE
Q 045366 127 --IPTNLSRCSNLVKFEASNNKLEGEIPAE-------------ISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQE 187 (289)
Q Consensus 127 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~ 187 (289)
+...+...++|++|++++|.+....... ....+.|+.+++++|.+... +...+...+.++.
T Consensus 111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~ 190 (344)
T d2ca6a1 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 190 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence 2334456789999999999875211111 13567899999999887643 2334567789999
Q ss_pred EEccCccCccc-----CCccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhh-----c
Q 045366 188 INVNGNRLSGR-----IPSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIG-----V 252 (289)
Q Consensus 188 L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~ 252 (289)
+++++|.+... +...+...++|+.|++++|.+... ...+..+++|++|++++|.+.+.-...++ .
T Consensus 191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~ 270 (344)
T d2ca6a1 191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 270 (344)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence 99999988642 334577889999999999988532 12267788999999999998744333322 1
Q ss_pred CCCCCcEEEccccccccc----cCccc-cCCCCCCeEeCcCC
Q 045366 253 NLPNLRFFIISGNNLTGS----LQDSL-SNTTNLHKLDINRN 289 (289)
Q Consensus 253 ~~~~L~~L~Ls~n~l~~~----~~~~~-~~~~~L~~L~l~~N 289 (289)
..+.|++|++++|.++.. +...+ .++++|++|++++|
T Consensus 271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 246799999999998753 33344 36889999999987
No 28
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.58 E-value=8.2e-14 Score=117.35 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEe
Q 045366 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD 285 (289)
Q Consensus 206 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 285 (289)
+++|++|++++|.++.++. .+++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|+.. .+|+.|.
T Consensus 283 ~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~ 350 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLR 350 (353)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred CCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence 4689999999999986653 3568999999999998 6763 3578999999999998 677533 3677777
Q ss_pred Cc
Q 045366 286 IN 287 (289)
Q Consensus 286 l~ 287 (289)
+.
T Consensus 351 ~~ 352 (353)
T d1jl5a_ 351 MN 352 (353)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 29
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=2.6e-16 Score=129.77 Aligned_cols=213 Identities=18% Similarity=0.179 Sum_probs=153.4
Q ss_pred CeeEEEeccCCCCCCc-CCccccCCCCCcEEEccCCCCcccCCccccccccccccccccc-ccCCC-CCccccCCCCCcE
Q 045366 63 QRVIGLDLRHQSIRGF-LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN-YFSGK-IPTNLSRCSNLVK 139 (289)
Q Consensus 63 ~~v~~l~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~ 139 (289)
.+++.+|++++.+... +...+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +...+..+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 6789999999887644 4556788999999999999998777788889999999999996 45421 1222356899999
Q ss_pred EEccCCc-CCC-Ccchhcc-CCCCCceeeeeccc--cccc-CChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEE
Q 045366 140 FEASNNK-LEG-EIPAEIS-NLLKFQILNIAKNH--LKGQ-LPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISF 212 (289)
Q Consensus 140 L~l~~n~-~~~-~~~~~~~-~l~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L 212 (289)
|+++++. ++. .+...+. ..++|+.|+++++. +++. +......+++|++|++++|. +++.....++.+++|++|
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L 205 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence 9999864 432 1223333 35789999998753 3322 23334678999999999875 776777788999999999
Q ss_pred eccCC-cCcccCC-CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC
Q 045366 213 NVGLN-QFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT 279 (289)
Q Consensus 213 ~l~~n-~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 279 (289)
++++| .+++... .+.++++|++|+++++ +++..-..+...+|+|+ +..+.+++..++.+++..
T Consensus 206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~~ 270 (284)
T d2astb2 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270 (284)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSSTT
T ss_pred ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCccc
Confidence 99996 5654332 2778899999999988 44333334444566654 567788766666565443
No 30
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=7.4e-17 Score=141.01 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCCCCCEEEccCCccccc----CchhhhcCCCCCcEEEccccccccc----cCccccCCCCCCeEeCcCC
Q 045366 228 NISSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNTTNLHKLDINRN 289 (289)
Q Consensus 228 ~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~N 289 (289)
..++|++|++++|.+.+. ++..+....+.|++|+|++|.+++. +.+.+..+++|++|||++|
T Consensus 338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N 407 (460)
T d1z7xw1 338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407 (460)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence 334677888888777532 2223333456678888888877643 3445666778888888776
No 31
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.47 E-value=4.7e-15 Score=125.39 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=152.5
Q ss_pred CCccccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccCCC----------CCccccCCCCCcEEEccC
Q 045366 79 LSPFVGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFSGK----------IPTNLSRCSNLVKFEASN 144 (289)
Q Consensus 79 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l~~ 144 (289)
+...+...+.+++|+|++|.+... +...+...+.|+.++++++..... +...+...++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 344566788999999999988643 334566779999999988765421 123356678999999999
Q ss_pred CcCCCC----cchhccCCCCCceeeeecccccccCC-------------hhccCCCCCCEEEccCccCccc----CCccc
Q 045366 145 NKLEGE----IPAEISNLLKFQILNIAKNHLKGQLP-------------ASIGNLSTLQEINVNGNRLSGR----IPSTR 203 (289)
Q Consensus 145 n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~n~~~~~----~~~~~ 203 (289)
|.+... +...+...++|++|++++|.+..... ......+.|+.+.+++|.++.. +...+
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l 182 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence 998754 33445678999999999998753211 1124577899999999987633 23445
Q ss_pred cCCCCCcEEeccCCcCccc------CCCCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEEccccccccccC--
Q 045366 204 SHVRNLISFNVGLNQFSGM------FPPINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIISGNNLTGSLQ-- 272 (289)
Q Consensus 204 ~~~~~L~~L~l~~n~l~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~-- 272 (289)
...++++++++++|.+... ...+...++|+.|++++|.++..-.. ......++|++|++++|.+++...
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 6778999999999998631 22367788999999999998633221 223478999999999999986533
Q ss_pred --ccccC--CCCCCeEeCcCC
Q 045366 273 --DSLSN--TTNLHKLDINRN 289 (289)
Q Consensus 273 --~~~~~--~~~L~~L~l~~N 289 (289)
..+.. .+.|++||+++|
T Consensus 263 l~~~l~~~~~~~L~~L~ls~N 283 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQYN 283 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHhhhccCCCCCEEECCCC
Confidence 33333 467999999987
No 32
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.46 E-value=5.8e-16 Score=120.63 Aligned_cols=111 Identities=19% Similarity=0.342 Sum_probs=49.2
Q ss_pred hhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCC
Q 045366 153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 232 (289)
Q Consensus 153 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L 232 (289)
..+..+++|++|++++|++.. ++ .+..+++|+.|++++|.++ .++.....+++|+.|++++|.++.+ +.+..+++|
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L 117 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHS
T ss_pred hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccc
Confidence 344444444444444444442 22 2444444555555544444 2333333333455555555544432 123344455
Q ss_pred CEEEccCCcccccCch-hhhcCCCCCcEEEccccccc
Q 045366 233 EYIFIHKNRYHGSLPL-DIGVNLPNLRFFIISGNNLT 268 (289)
Q Consensus 233 ~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~ 268 (289)
++|++++|+++ .++. ..+..+++|+.|++++|.+.
T Consensus 118 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccchhc-cccccccccCCCccceeecCCCccc
Confidence 55555555554 2221 22234555555555555544
No 33
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.42 E-value=1.1e-15 Score=119.15 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=85.0
Q ss_pred CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 045366 79 LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNL 158 (289)
Q Consensus 79 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 158 (289)
++..+..+++|++|++++|+++. ++ .+.++++|++|++++|.++ .+|.....+++|++|++++|.++. + ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence 44567778888888888888874 33 4788888888888888887 566555555678888888888873 3 346777
Q ss_pred CCCceeeeecccccccCC-hhccCCCCCCEEEccCccCccc
Q 045366 159 LKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGR 198 (289)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~ 198 (289)
++|++|++++|++..... ..+..+++|+.|++++|.+...
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 888888888888874322 4577788888888888876543
No 34
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.39 E-value=1.4e-12 Score=97.20 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=40.5
Q ss_pred chhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCC
Q 045366 152 PAEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS 230 (289)
Q Consensus 152 ~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 230 (289)
|..+..+++|++|++.+|+ ++...+.+|.++++|+.|++++|+++...+.+|..+++|++|+|++|.++.+.+......
T Consensus 24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 103 (156)
T d2ifga3 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (156)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence 3333344444444443332 333333344444444444444444443334444445555555555555544433311222
Q ss_pred CCCEEEccCCcc
Q 045366 231 SLEYIFIHKNRY 242 (289)
Q Consensus 231 ~L~~L~l~~n~l 242 (289)
++++|++++|.+
T Consensus 104 ~l~~L~L~~Np~ 115 (156)
T d2ifga3 104 SLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSSCC
T ss_pred cccccccCCCcc
Confidence 455555555554
No 35
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.35 E-value=2.4e-14 Score=124.78 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCEEEccCccCcccCC----ccccCCCCCcEEeccCCcCccc-----CCCC-CCCCCCCEEEccCCccccc----Cch
Q 045366 183 STLQEINVNGNRLSGRIP----STRSHVRNLISFNVGLNQFSGM-----FPPI-NNISSLEYIFIHKNRYHGS----LPL 248 (289)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~-----~~~~-~~~~~L~~L~l~~n~l~~~----~~~ 248 (289)
..|+.++++++.++.... ..+...++|++|++++|.+... ...+ ...+.|++|++++|.+++. ++.
T Consensus 312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 391 (460)
T d1z7xw1 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 391 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence 456777777776653322 2234557899999999998632 1112 3457899999999999743 233
Q ss_pred hhhcCCCCCcEEEccccccccccCcc----cc-CCCCCCeEeCcCC
Q 045366 249 DIGVNLPNLRFFIISGNNLTGSLQDS----LS-NTTNLHKLDINRN 289 (289)
Q Consensus 249 ~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~-~~~~L~~L~l~~N 289 (289)
.+. ..++|++|++++|++++..... +. +.+.|+.|++++|
T Consensus 392 ~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~ 436 (460)
T d1z7xw1 392 TLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436 (460)
T ss_dssp HHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence 333 6799999999999998644333 32 4457999999875
No 36
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=4.4e-12 Score=94.38 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=60.6
Q ss_pred ccccccccccCCCCCccccCCCCCcEEEccCC-cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccC
Q 045366 114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG 192 (289)
Q Consensus 114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 192 (289)
+.++.+++.+. ..|..+..+++|++|++.+| .++...+..|..+++|+.|++++|+++...+.+|..+++|++|++++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 44555555554 44555555666666666544 35544445566666666666666666655556666666666666666
Q ss_pred ccCcccCCccccCCCCCcEEeccCCcCc
Q 045366 193 NRLSGRIPSTRSHVRNLISFNVGLNQFS 220 (289)
Q Consensus 193 n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (289)
|+++. +|........|+.|++++|.+.
T Consensus 90 N~l~~-l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 90 NALES-LSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCcc-cChhhhccccccccccCCCccc
Confidence 66663 3333223335666676666654
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.64 E-value=8.1e-10 Score=82.37 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=45.5
Q ss_pred hccCCCCCCEEEccCccCccc--CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCch------
Q 045366 178 SIGNLSTLQEINVNGNRLSGR--IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPL------ 248 (289)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~------ 248 (289)
.+..+++|++|++++|+++.. ++..+..+++|+.|++++|.++.+... .....++++|++++|.+......
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~ 139 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence 334566777777777776632 123445566666666666666654332 22223566666666666533221
Q ss_pred hhhcCCCCCcEEE
Q 045366 249 DIGVNLPNLRFFI 261 (289)
Q Consensus 249 ~~~~~~~~L~~L~ 261 (289)
.++..+|+|+.||
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 1233556666554
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.58 E-value=2.1e-09 Score=80.04 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=16.3
Q ss_pred cCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366 156 SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196 (289)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (289)
..+++|+.|++++|.+....+-.+....+|+++++++|.+.
T Consensus 88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 34444444444444444222212222233444444444443
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.06 E-value=6.4e-07 Score=66.52 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=67.1
Q ss_pred cCCCCCceeeeecc-ccccc----CChhccCCCCCCEEEccCccCcccC----CccccCCCCCcEEeccCCcCccc----
Q 045366 156 SNLLKFQILNIAKN-HLKGQ----LPASIGNLSTLQEINVNGNRLSGRI----PSTRSHVRNLISFNVGLNQFSGM---- 222 (289)
Q Consensus 156 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~---- 222 (289)
.+.+.|++|+++++ .+... +...+...+.|++|++++|.+.... ...+...+.|++|++++|.+...
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 35678888888764 34422 2345667778888888888776432 23344567788888888877531
Q ss_pred -CCCCCCCCCCCEEEccCCcccccCch----hh---hcCCCCCcEEEccccc
Q 045366 223 -FPPINNISSLEYIFIHKNRYHGSLPL----DI---GVNLPNLRFFIISGNN 266 (289)
Q Consensus 223 -~~~~~~~~~L~~L~l~~n~l~~~~~~----~~---~~~~~~L~~L~Ls~n~ 266 (289)
...+...++|++|++++|.+. .+.. .+ ...-++|+.|+++.+.
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 112566677888888777654 2211 11 1234677777776653
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.93 E-value=1.2e-06 Score=64.99 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.8
Q ss_pred CCCcEEEcc
Q 045366 87 SFLRSINLV 95 (289)
Q Consensus 87 ~~L~~L~L~ 95 (289)
+.|++|+|+
T Consensus 15 ~~L~~L~L~ 23 (167)
T d1pgva_ 15 TDLKEVNIN 23 (167)
T ss_dssp SSCCEEECT
T ss_pred CCCcEEEeC
Confidence 334444444
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.42 E-value=1e-05 Score=59.64 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=4.2
Q ss_pred CCCcEEEccC
Q 045366 87 SFLRSINLVN 96 (289)
Q Consensus 87 ~~L~~L~L~~ 96 (289)
+.|++|++++
T Consensus 17 ~~L~~L~L~~ 26 (166)
T d1io0a_ 17 PDLEEVNLNN 26 (166)
T ss_dssp TTCCEEECTT
T ss_pred CCCcEEEcCC
Confidence 3444444443
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.41 E-value=1.2e-05 Score=59.17 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=61.2
Q ss_pred ccCCCCCceeeeec-cccccc----CChhccCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCccc---
Q 045366 155 ISNLLKFQILNIAK-NHLKGQ----LPASIGNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGM--- 222 (289)
Q Consensus 155 ~~~l~~L~~L~l~~-n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~--- 222 (289)
..+.++|++|++++ +.++.. +..++...+.|++|++++|.++.. +...+...+.++.+++++|.+...
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 34567788888876 344422 233455677788888888776533 223444556777777777766421
Q ss_pred --CCCCCCCCCCCEEEcc--CCcccccCchhh---hcCCCCCcEEEccccc
Q 045366 223 --FPPINNISSLEYIFIH--KNRYHGSLPLDI---GVNLPNLRFFIISGNN 266 (289)
Q Consensus 223 --~~~~~~~~~L~~L~l~--~n~l~~~~~~~~---~~~~~~L~~L~Ls~n~ 266 (289)
...+...++++.++++ +|.+.+.....+ ....++|+.|+++.+.
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 1124455666665443 444432111111 1245667777666554
Done!