Query 045369
Match_columns 117
No_of_seqs 170 out of 637
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1110 Putative steroid membr 99.8 4.1E-19 8.9E-24 137.2 7.9 90 15-117 1-91 (183)
2 KOG1108 Predicted heme/steroid 99.2 6.7E-12 1.5E-16 101.4 3.8 82 22-116 13-94 (281)
3 COG4892 Predicted heme/steroid 99.2 2.2E-11 4.8E-16 82.9 3.8 33 81-115 1-33 (81)
4 PF00173 Cyt-b5: Cytochrome b5 98.2 6.9E-07 1.5E-11 57.6 2.2 29 84-115 2-30 (76)
5 KOG0536 Flavohemoprotein b5+b5 97.9 1.2E-05 2.5E-10 60.6 3.5 29 83-114 69-97 (145)
6 COG5274 CYB5 Cytochrome b invo 96.9 0.00095 2.1E-08 51.4 3.4 31 82-115 50-80 (164)
7 PLN03198 delta6-acyl-lipid des 96.4 0.0031 6.7E-08 55.5 3.4 32 80-114 102-133 (526)
8 PLN03199 delta6-acyl-lipid des 96.4 0.0036 7.7E-08 54.3 3.7 30 82-114 24-53 (485)
9 PLN02252 nitrate reductase [NA 95.7 0.012 2.5E-07 54.9 4.1 32 80-114 516-547 (888)
10 KOG4576 Sulfite oxidase, heme- 90.0 0.24 5.3E-06 37.9 2.3 30 83-114 81-110 (167)
11 KOG4232 Delta 6-fatty acid des 74.5 1.4 3.1E-05 38.6 1.0 29 82-114 8-36 (430)
12 PF14901 Jiv90: Cleavage induc 67.8 3.4 7.3E-05 29.3 1.5 15 100-114 56-70 (94)
13 PF10717 ODV-E18: Occlusion-de 59.7 12 0.00027 26.1 3.1 27 16-43 20-46 (85)
14 PHA02681 ORF089 virion membran 52.3 42 0.0009 23.7 4.7 18 76-93 44-61 (92)
15 PHA03049 IMV membrane protein; 50.7 32 0.00069 23.2 3.8 23 22-44 4-26 (68)
16 PF15361 RIC3: Resistance to i 48.5 46 0.001 25.0 4.8 21 23-43 88-108 (152)
17 PF04689 S1FA: DNA binding pro 48.2 4 8.7E-05 27.4 -0.8 20 15-34 7-26 (69)
18 PF12273 RCR: Chitin synthesis 47.7 10 0.00022 27.1 1.2 13 23-35 4-16 (130)
19 PF05961 Chordopox_A13L: Chord 46.8 44 0.00096 22.5 4.0 23 22-44 4-26 (68)
20 PF06522 B12D: NADH-ubiquinone 46.6 33 0.0007 22.6 3.4 31 17-47 5-35 (73)
21 PRK13453 F0F1 ATP synthase sub 45.7 24 0.00052 26.4 2.9 32 12-43 10-41 (173)
22 PF10875 DUF2670: Protein of u 44.4 34 0.00074 25.7 3.5 37 4-40 1-44 (139)
23 PF15086 UPF0542: Uncharacteri 41.0 77 0.0017 21.6 4.5 36 6-41 5-40 (74)
24 PF04272 Phospholamban: Phosph 40.5 43 0.00093 21.2 3.0 19 20-38 32-50 (52)
25 PF02009 Rifin_STEVOR: Rifin/s 40.4 25 0.00054 29.3 2.5 21 18-38 260-280 (299)
26 PRK08476 F0F1 ATP synthase sub 40.3 31 0.00067 25.1 2.7 28 17-44 4-31 (141)
27 PF06024 DUF912: Nucleopolyhed 40.3 10 0.00023 26.4 0.2 17 21-37 69-85 (101)
28 PRK04561 tatA twin arginine tr 40.0 33 0.00072 23.4 2.6 18 17-34 3-20 (75)
29 PF04277 OAD_gamma: Oxaloaceta 39.5 68 0.0015 20.6 4.0 27 18-44 10-36 (79)
30 PRK14750 kdpF potassium-transp 37.1 81 0.0018 17.9 3.5 25 19-43 2-26 (29)
31 PRK02958 tatA twin arginine tr 36.9 39 0.00085 22.8 2.6 18 17-34 3-20 (73)
32 PRK00720 tatA twin arginine tr 36.3 41 0.00089 23.0 2.7 18 17-34 3-20 (78)
33 PRK04598 tatA twin arginine tr 36.1 41 0.00089 23.2 2.6 18 17-34 3-20 (81)
34 PF10419 TFIIIC_sub6: TFIIIC s 35.6 55 0.0012 18.9 2.8 22 91-113 2-23 (35)
35 PF06078 DUF937: Bacterial pro 35.5 77 0.0017 22.6 4.2 28 6-33 102-129 (137)
36 PRK03814 oxaloacetate decarbox 33.9 1.1E+02 0.0023 21.0 4.4 27 18-44 17-43 (85)
37 PF11662 DUF3263: Protein of u 33.6 62 0.0014 22.1 3.2 22 9-30 25-46 (77)
38 PF07172 GRP: Glycine rich pro 33.5 47 0.001 23.1 2.7 17 24-40 6-22 (95)
39 PRK03554 tatA twin arginine tr 33.2 48 0.001 23.4 2.6 18 17-34 3-20 (89)
40 PF13068 DUF3932: Protein of u 32.8 32 0.00068 23.5 1.6 15 5-19 32-46 (81)
41 cd00565 ThiS ThiaminS ubiquiti 32.6 69 0.0015 19.9 3.1 27 83-110 14-40 (65)
42 PRK14473 F0F1 ATP synthase sub 32.3 43 0.00093 24.6 2.4 25 17-41 5-29 (164)
43 PRK10781 rcsF outer membrane l 32.3 64 0.0014 24.1 3.4 16 80-95 48-64 (133)
44 PRK14748 kdpF potassium-transp 32.3 1E+02 0.0022 17.5 3.4 25 19-43 2-26 (29)
45 PF01102 Glycophorin_A: Glycop 32.2 62 0.0013 23.7 3.2 23 21-43 72-94 (122)
46 PRK01833 tatA twin arginine tr 32.0 53 0.0012 22.2 2.6 18 17-34 3-20 (74)
47 PLN02822 serine palmitoyltrans 31.6 1.7E+02 0.0037 25.3 6.3 23 22-44 38-60 (481)
48 PRK01470 tatA twin arginine tr 31.0 55 0.0012 20.6 2.4 17 17-33 2-18 (51)
49 TIGR01294 P_lamban phospholamb 30.8 73 0.0016 20.1 2.9 19 20-38 32-50 (52)
50 PF05480 Staph_haemo: Staphylo 30.6 1.3E+02 0.0029 18.4 5.4 25 1-25 1-25 (43)
51 TIGR00822 EII-Sor PTS system, 30.5 95 0.0021 25.5 4.4 25 11-35 214-238 (265)
52 COG4880 Secreted protein conta 30.2 53 0.0012 29.8 3.0 32 79-114 96-127 (603)
53 TIGR01683 thiS thiamine biosyn 29.5 95 0.0021 19.2 3.4 27 83-110 13-39 (64)
54 PRK03625 tatE twin arginine tr 28.8 59 0.0013 21.6 2.4 18 17-34 3-20 (67)
55 PF06743 FAST_1: FAST kinase-l 28.8 1.6E+02 0.0035 18.8 4.6 32 2-33 19-51 (71)
56 PRK06488 sulfur carrier protei 28.7 81 0.0018 19.6 3.0 28 83-111 14-41 (65)
57 PF10661 EssA: WXG100 protein 28.7 61 0.0013 24.2 2.7 16 26-41 129-144 (145)
58 PRK01614 tatE twin arginine tr 28.5 63 0.0014 22.6 2.6 18 17-34 3-20 (85)
59 PF10411 DsbC_N: Disulfide bon 28.3 58 0.0013 20.2 2.2 17 98-116 41-57 (57)
60 PRK09174 F0F1 ATP synthase sub 28.0 45 0.00098 26.0 2.0 24 21-44 54-77 (204)
61 PTZ00046 rifin; Provisional 27.6 94 0.002 26.8 4.0 21 18-38 319-339 (358)
62 TIGR01477 RIFIN variant surfac 27.6 71 0.0015 27.5 3.3 21 18-38 314-334 (353)
63 TIGR01411 tatAE twin arginine- 27.5 70 0.0015 19.5 2.4 17 17-33 1-17 (47)
64 PRK08053 sulfur carrier protei 26.9 1.2E+02 0.0026 19.0 3.6 27 83-110 15-41 (66)
65 COG5336 Uncharacterized protei 26.8 1.1E+02 0.0025 22.4 3.8 16 12-27 66-81 (116)
66 PF06570 DUF1129: Protein of u 26.4 92 0.002 23.8 3.5 26 17-42 177-202 (206)
67 PRK13461 F0F1 ATP synthase sub 25.4 76 0.0017 23.1 2.7 24 18-41 3-26 (159)
68 PHA02902 putative IMV membrane 24.8 2.2E+02 0.0049 19.1 4.8 17 76-92 46-62 (70)
69 COG2028 Uncharacterized conser 24.7 57 0.0012 24.6 1.9 24 83-106 79-109 (145)
70 cd01789 Alp11_N Ubiquitin-like 24.6 51 0.0011 21.8 1.6 19 5-23 25-43 (84)
71 PRK05659 sulfur carrier protei 24.3 1.4E+02 0.003 18.3 3.4 28 83-111 15-42 (66)
72 PRK07696 sulfur carrier protei 24.1 1.2E+02 0.0025 19.3 3.1 26 84-110 17-42 (67)
73 PRK14859 tatA twin arginine tr 23.9 90 0.0019 20.4 2.6 18 17-34 3-20 (63)
74 PHA00736 hypothetical protein 23.6 1.3E+02 0.0028 20.5 3.3 29 12-40 7-36 (79)
75 PRK14472 F0F1 ATP synthase sub 23.4 82 0.0018 23.4 2.6 26 16-41 14-39 (175)
76 PRK13454 F0F1 ATP synthase sub 23.2 71 0.0015 24.1 2.3 23 22-44 33-55 (181)
77 PRK00191 tatA twin arginine tr 23.1 92 0.002 21.6 2.6 18 17-34 2-19 (84)
78 PRK07440 hypothetical protein; 23.0 1.6E+02 0.0034 19.0 3.6 28 83-111 19-46 (70)
79 TIGR03758 conj_TIGR03758 integ 22.6 2.1E+02 0.0046 18.9 4.2 26 10-35 6-31 (65)
80 PF05279 Asp-B-Hydro_N: Aspart 22.4 1E+02 0.0023 25.1 3.2 16 17-32 9-24 (243)
81 smart00309 PAH Pancreatic horm 22.4 77 0.0017 18.7 1.8 12 82-93 10-21 (36)
82 PRK06083 sulfur carrier protei 22.1 1.5E+02 0.0033 20.0 3.5 28 83-111 33-60 (84)
83 PRK00442 tatA twin arginine tr 21.4 99 0.0022 21.8 2.5 18 17-34 3-20 (92)
84 COG2104 ThiS Sulfur transfer p 21.4 1.3E+02 0.0027 19.7 2.9 27 84-111 18-44 (68)
85 PF05132 RNA_pol_Rpc4: RNA pol 21.3 1.1E+02 0.0024 21.9 2.9 19 98-116 77-95 (131)
86 COG4736 CcoQ Cbb3-type cytochr 20.7 2.5E+02 0.0055 18.2 4.4 29 5-38 3-31 (60)
87 KOG0720 Molecular chaperone (D 20.6 59 0.0013 29.2 1.5 16 99-114 377-392 (490)
88 PF11100 TrbE: Conjugal transf 20.2 54 0.0012 21.9 0.9 36 5-40 24-59 (66)
89 PF04033 DUF365: Domain of unk 20.0 76 0.0017 22.7 1.7 24 83-106 41-71 (97)
No 1
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=99.78 E-value=4.1e-19 Score=137.25 Aligned_cols=90 Identities=36% Similarity=0.622 Sum_probs=66.0
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHHhhccCCC-CCcchhhhhhhhhHHHHHHhhhccCCCCCCCCCcccCCCCHHHHhhcc
Q 045369 15 YTGLSPAAFFTILALMCVVYKTVCSMFVDPE-PPEDLKNKLISSSAAASAATAANFSNQTVIPETVQLGEVTEHELRAYD 93 (117)
Q Consensus 15 ~tglsp~~~~tila~~~~vY~~v~~~f~~~~-~~~~~~~~~~~~~a~~~a~~~~~e~~~p~~~~p~~~~~fT~eeL~~yd 93 (117)
|+||+|..+++.++++++++.++...+..+. ....+. + .....+.+|...+| +.++||.|||++||
T Consensus 1 ~~gl~~~~~~tpl~~al~~~~l~~~~kl~~~~~r~~~~-----~-------~~~~~~~~P~~~~P-~~~dfT~eEL~~yd 67 (183)
T KOG1110|consen 1 YVGLAPKVFFTPLALALLIFLLFVGLKLSRFKFRRDSE-----K-------SDGSTEEPPKESLP-KVRDFTVEELRQYD 67 (183)
T ss_pred CCccchhhhhhhHHHHHHHHHHHhheeeeeeecccccc-----c-------cccCCCCCCccCCC-cccccCHHHHHhcC
Confidence 6789999999999999999999888876652 111110 0 01111121222233 34599999999999
Q ss_pred CCCCCCCeEEEECCeEEEecCCCC
Q 045369 94 GSDPNKPLLMAIKGQIYDVSRSRH 117 (117)
Q Consensus 94 G~d~~~pi~lAi~G~VYDVt~gr~ 117 (117)
|+++++||||||||+|||||+||+
T Consensus 68 Gs~~d~~Il~AI~G~VYDVT~Gr~ 91 (183)
T KOG1110|consen 68 GSDPDKPILLAINGKVYDVTRGRE 91 (183)
T ss_pred CCCCCCceEEEecceEEEecCCcc
Confidence 999999999999999999999985
No 2
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=99.22 E-value=6.7e-12 Score=101.36 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCCCCcccCCCCHHHHhhccCCCCCCCe
Q 045369 22 AFFTILALMCVVYKTVCSMFVDPEPPEDLKNKLISSSAAASAATAANFSNQTVIPETVQLGEVTEHELRAYDGSDPNKPL 101 (117)
Q Consensus 22 ~~~tila~~~~vY~~v~~~f~~~~~~~~~~~~~~~~~a~~~a~~~~~e~~~p~~~~p~~~~~fT~eeL~~ydG~d~~~pi 101 (117)
..+.+.++...+|....+.|...+..+..++.. ..++. |.....-....||+|||++|||+++++||
T Consensus 13 ~~~vvaa~~v~~~~sE~~~~l~~~t~n~~d~~~------~~~si-------pv~~~ag~k~lFtpeeLa~fnGt~e~~pi 79 (281)
T KOG1108|consen 13 FLFVVAAVLVGIYHTEIRQFLRRWTDNYLDQAW------QDASI-------PLAFQAGDKILFTPEELAKFNGTEEGRPI 79 (281)
T ss_pred hhhhHHHHhhhhhhHHHHHHHHHHHhhccchhc------ccccc-------chhhhcCCceeeCHHHHhhccCCCCCCce
Confidence 345566777788888888887766665554311 00011 12222334458999999999999999999
Q ss_pred EEEECCeEEEecCCC
Q 045369 102 LMAIKGQIYDVSRSR 116 (117)
Q Consensus 102 ~lAi~G~VYDVt~gr 116 (117)
|+||.|+|||||+|+
T Consensus 80 yLaiLGsVfdVs~gk 94 (281)
T KOG1108|consen 80 YLAILGSVFDVSRGK 94 (281)
T ss_pred eeeeeceeeeccCCe
Confidence 999999999999997
No 3
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.17 E-value=2.2e-11 Score=82.91 Aligned_cols=33 Identities=42% Similarity=0.758 Sum_probs=30.2
Q ss_pred cCCCCHHHHhhccCCCCCCCeEEEECCeEEEecCC
Q 045369 81 LGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRS 115 (117)
Q Consensus 81 ~~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~g 115 (117)
+|+||.|||++|||++ + |+|||++|+|||||.+
T Consensus 1 mrefTLEELs~ynG~n-G-paYiA~~G~VYDvS~s 33 (81)
T COG4892 1 MREFTLEELSKYNGEN-G-PAYIAVNGTVYDVSLS 33 (81)
T ss_pred CceecHHHHHhhcCCC-C-CeEEEECCEEEeeccC
Confidence 4789999999999987 4 9999999999999975
No 4
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=98.22 E-value=6.9e-07 Score=57.61 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCHHHHhhccCCCCCCCeEEEECCeEEEecCC
Q 045369 84 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRS 115 (117)
Q Consensus 84 fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~g 115 (117)
||.+||+++| + ++++|++|+|+|||||.-
T Consensus 2 ~t~~el~~h~--~-~~~~~v~i~g~VYDvt~~ 30 (76)
T PF00173_consen 2 YTWEELAKHN--K-KGDCWVIIDGKVYDVTDF 30 (76)
T ss_dssp EEHHHHTTTE--E-TTEEEEEETTEEEECTTT
T ss_pred CCHHHHhhhC--C-CCCEEEEECCEEcccccc
Confidence 7899999999 3 558999999999999973
No 5
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=97.89 E-value=1.2e-05 Score=60.58 Aligned_cols=29 Identities=34% Similarity=0.617 Sum_probs=26.9
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
.+|.+||+++|-.| .+|++|+|+|||||.
T Consensus 69 ~vt~~El~KH~~~d---DcW~~i~G~VYnVt~ 97 (145)
T KOG0536|consen 69 PVTAEELKKHNKKD---DCWIAIRGKVYNVTA 97 (145)
T ss_pred ccCHHHHHhhCCcc---ceEEEEcCEEEeccc
Confidence 68999999999988 399999999999995
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=96.90 E-value=0.00095 Score=51.38 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.7
Q ss_pred CCCCHHHHhhccCCCCCCCeEEEECCeEEEecCC
Q 045369 82 GEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRS 115 (117)
Q Consensus 82 ~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~g 115 (117)
..++.+|+.+++..+ .+||.|+|+|||||+-
T Consensus 50 ~~~~~eev~~h~~~~---d~~ivi~g~VyDvs~f 80 (164)
T COG5274 50 KPITAEEVAKHNKSE---DCWIVINGKVYDVSQF 80 (164)
T ss_pred ccccHHHHHHhcCcc---ceEEEEcCEEEEhhhc
Confidence 469999999999987 3999999999999963
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=96.38 E-value=0.0031 Score=55.51 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.1
Q ss_pred ccCCCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 80 QLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 80 ~~~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
+.+.+|.+|++++|-.+ .+|+.|+|+|||||.
T Consensus 102 ~~~~~t~~ev~~H~~~~---d~Wivi~gkVYDvT~ 133 (526)
T PLN03198 102 KSKSHLLSEVAAHNKPN---DCWIVIKNKVYDVSD 133 (526)
T ss_pred ccCcCCHHHHHhhCCCC---CeEEEECCEEEecHH
Confidence 34589999999999876 599999999999984
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=96.36 E-value=0.0036 Score=54.26 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 82 GEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 82 ~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
+.||.+|+++++..+ .+|+.|+|+|||||+
T Consensus 24 ~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~ 53 (485)
T PLN03199 24 QKISWQEVKKHASPD---DAWIIHQNKVYDVSN 53 (485)
T ss_pred CccCHHHHHhhCCCC---CeEEEECCEEEcCCC
Confidence 569999999999866 589999999999995
No 9
>PLN02252 nitrate reductase [NADPH]
Probab=95.73 E-value=0.012 Score=54.87 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=28.1
Q ss_pred ccCCCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 80 QLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 80 ~~~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
..+.||.+|+++++..+ .+|+.|+|+|||||.
T Consensus 516 ~~~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~ 547 (888)
T PLN02252 516 GSKQYTMSEVRKHNSED---SCWIVVHGHVYDCTR 547 (888)
T ss_pred ccceeCHHHHHhhCcCC---CeEEEECCEEEeCHH
Confidence 44789999999999865 599999999999984
No 10
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=90.03 E-value=0.24 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
.+|.||.++++- +..+||+-++.-|||||.
T Consensus 81 iY~~EEV~~H~s--~e~rIWVTyg~gVyDVTd 110 (167)
T KOG4576|consen 81 IYTKEEVSSHTS--PETRIWVTYGSGVYDVTD 110 (167)
T ss_pred chhHHHHHhcCC--CccceEEEecCcceeHHH
Confidence 599999999987 356899999999999984
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=74.47 E-value=1.4 Score=38.56 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.5
Q ss_pred CCCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 82 GEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 82 ~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
+.+|-|+++++|+.+ ..|+.|.| |||+|.
T Consensus 8 ~~~~we~~~~~~~~~---~~W~~id~-vYd~s~ 36 (430)
T KOG4232|consen 8 TTFSWEGKRKHDKAE---GLWLVIDG-VYDISD 36 (430)
T ss_pred eeeeccchhhccCCC---ceEEEeec-cccHHH
Confidence 468889999999988 48999999 999984
No 12
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=67.77 E-value=3.4 Score=29.32 Aligned_cols=15 Identities=20% Similarity=0.702 Sum_probs=13.2
Q ss_pred CeEEEECCeEEEecC
Q 045369 100 PLLMAIKGQIYDVSR 114 (117)
Q Consensus 100 pi~lAi~G~VYDVt~ 114 (117)
..|.-..|+|||+|.
T Consensus 56 ~yy~c~~g~VyDiTe 70 (94)
T PF14901_consen 56 TYYACMDGKVYDITE 70 (94)
T ss_pred EEEEEcCceEEehhh
Confidence 578889999999995
No 13
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=59.70 E-value=12 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=19.3
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHhhccC
Q 045369 16 TGLSPAAFFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 16 tglsp~~~~tila~~~~vY~~v~~~f~~ 43 (117)
.|++|-.+.+|+++++.+..++- +|..
T Consensus 20 ~~l~pn~lMtILivLVIIiLlIm-lfqs 46 (85)
T PF10717_consen 20 NGLNPNTLMTILIVLVIIILLIM-LFQS 46 (85)
T ss_pred cccChhHHHHHHHHHHHHHHHHH-HHhc
Confidence 57899999998887776665544 4543
No 14
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=52.34 E-value=42 Score=23.69 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCCcccCCCCHHHHhhcc
Q 045369 76 PETVQLGEVTEHELRAYD 93 (117)
Q Consensus 76 ~~p~~~~~fT~eeL~~yd 93 (117)
..++-...+|++|.+.|-
T Consensus 44 ~ds~F~D~lTpDQVrAlH 61 (92)
T PHA02681 44 GASSFEDKMTDDQVRAFH 61 (92)
T ss_pred CCchhhccCCHHHHHHHH
Confidence 455656789999998775
No 15
>PHA03049 IMV membrane protein; Provisional
Probab=50.69 E-value=32 Score=23.16 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 045369 22 AFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 22 ~~~tila~~~~vY~~v~~~f~~~ 44 (117)
.+++++++++++-.++++++.+.
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666677777777543
No 16
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=48.49 E-value=46 Score=25.00 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 045369 23 FFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 23 ~~tila~~~~vY~~v~~~f~~ 43 (117)
+.||.++++++|.+++..+..
T Consensus 88 lYtiGI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 88 LYTIGIVLFILYTLFKIKKKK 108 (152)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 467788888888887766443
No 17
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.22 E-value=4 Score=27.42 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=12.2
Q ss_pred hhCCChHHHHHHHHHHHHHH
Q 045369 15 YTGLSPAAFFTILALMCVVY 34 (117)
Q Consensus 15 ~tglsp~~~~tila~~~~vY 34 (117)
-.||+|..++++++.-+++.
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~ 26 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLV 26 (69)
T ss_pred ccCCCCCeEEeehHHHHHHH
Confidence 37999977666544433333
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.70 E-value=10 Score=27.12 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 045369 23 FFTILALMCVVYK 35 (117)
Q Consensus 23 ~~tila~~~~vY~ 35 (117)
+|.|++++++++.
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 4444333333333
No 19
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=46.76 E-value=44 Score=22.47 Aligned_cols=23 Identities=9% Similarity=0.272 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 045369 22 AFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 22 ~~~tila~~~~vY~~v~~~f~~~ 44 (117)
.+++++++++++-.++++++.+.
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666667777777776543
No 20
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=46.63 E-value=33 Score=22.61 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 045369 17 GLSPAAFFTILALMCVVYKTVCSMFVDPEPP 47 (117)
Q Consensus 17 glsp~~~~tila~~~~vY~~v~~~f~~~~~~ 47 (117)
.+-|.-++..+++..++|++++.++..|+-.
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l~~~PdV~ 35 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLLLTNPDVR 35 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 3568888889999999999999998887543
No 21
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=45.69 E-value=24 Score=26.41 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=20.4
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHhhccC
Q 045369 12 VTTYTGLSPAAFFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 12 i~~~tglsp~~~~tila~~~~vY~~v~~~f~~ 43 (117)
+-+..|++++++|..++..++++.+++.++-+
T Consensus 10 ~~~~~~~~~~t~~~~iInFliL~~lL~~~l~~ 41 (173)
T PRK13453 10 LGAAGGVEWGTVIVTVLTFIVLLALLKKFAWG 41 (173)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888776655555555555555433
No 22
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=44.42 E-value=34 Score=25.72 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHh-hCCChHHHHH------HHHHHHHHHHHHHhh
Q 045369 4 FFAAVMDTVTTY-TGLSPAAFFT------ILALMCVVYKTVCSM 40 (117)
Q Consensus 4 ~~~~~~~~i~~~-tglsp~~~~t------ila~~~~vY~~v~~~ 40 (117)
.|++++.-|.+- .|+-++++++ .++-++.+||++.++
T Consensus 1 mwqalrrlIaaNPMg~flw~iItKWyL~IavaSlI~lyy~v~gl 44 (139)
T PF10875_consen 1 MWQALRRLIAANPMGFFLWSIITKWYLIIAVASLITLYYTVLGL 44 (139)
T ss_pred ChHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 399999988762 2333333333 356678899998877
No 23
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=41.01 E-value=77 Score=21.64 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhhc
Q 045369 6 AAVMDTVTTYTGLSPAAFFTILALMCVVYKTVCSMF 41 (117)
Q Consensus 6 ~~~~~~i~~~tglsp~~~~tila~~~~vY~~v~~~f 41 (117)
..-.+.++-|--=+|..|++.+++++.=.++++..+
T Consensus 5 k~w~~~~v~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 5 KAWASYIVEWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 344466677777899999998888887777777776
No 24
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=40.46 E-value=43 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 045369 20 PAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 20 p~~~~tila~~~~vY~~v~ 38 (117)
..+|.+|+++++++|.++-
T Consensus 32 fvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 32 FVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887763
No 25
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=40.41 E-value=25 Score=29.32 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 045369 18 LSPAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~ 38 (117)
.|-.+++.|+++++.+|++++
T Consensus 260 aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888999999987
No 26
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=40.32 E-value=31 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhccCC
Q 045369 17 GLSPAAFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 17 glsp~~~~tila~~~~vY~~v~~~f~~~ 44 (117)
++++++|+..++..+++|.+++.++-+|
T Consensus 4 ~l~~~~~~~qli~Flil~~~l~kfl~kP 31 (141)
T PRK08476 4 DVNPYLMLATFVVFLLLIVILNSWLYKP 31 (141)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776666666666666666655443
No 27
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=40.31 E-value=10 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045369 21 AAFFTILALMCVVYKTV 37 (117)
Q Consensus 21 ~~~~tila~~~~vY~~v 37 (117)
.++|.++++++++||++
T Consensus 69 ls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 69 LSFVCILVILYAIYYFV 85 (101)
T ss_pred HHHHHHHHHHhhheEEE
Confidence 34555555555555443
No 28
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=39.97 E-value=33 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=12.2
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|+||+-++.|++++++++
T Consensus 3 g~s~~ellIIlvIvlLlF 20 (75)
T PRK04561 3 SFSIWHWLVVLVIVLLVF 20 (75)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 678887777766665543
No 29
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=39.46 E-value=68 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhccCC
Q 045369 18 LSPAAFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~~~f~~~ 44 (117)
+.....|++|+++.++..++++++...
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~~~~~~~~ 36 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLMSKLIRKF 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446778888888888888888886443
No 30
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=37.15 E-value=81 Score=17.94 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccC
Q 045369 19 SPAAFFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 19 sp~~~~tila~~~~vY~~v~~~f~~ 43 (117)
|...+..++++++++-|+++.+|..
T Consensus 2 s~~vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 2 NFSIVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3344555677777777788877754
No 31
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=36.87 E-value=39 Score=22.80 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=12.5
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++|+-++.|++++++++
T Consensus 3 ~~g~~elliIl~IvlllF 20 (73)
T PRK02958 3 SFSIWHWLIVLVIVVLVF 20 (73)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 578887777776666554
No 32
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=36.33 E-value=41 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 g~g~~ellIIlvIvlllF 20 (78)
T PRK00720 3 SFSIWHWLIVLAVVLLLF 20 (78)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 678887777766666655
No 33
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=36.08 E-value=41 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=12.3
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 glg~~elliIlvivlllF 20 (81)
T PRK04598 3 GISIWQLLIIAVIVVLLF 20 (81)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 678887777766666554
No 34
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=35.65 E-value=55 Score=18.93 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=16.8
Q ss_pred hccCCCCCCCeEEEECCeEEEec
Q 045369 91 AYDGSDPNKPLLMAIKGQIYDVS 113 (117)
Q Consensus 91 ~ydG~d~~~pi~lAi~G~VYDVt 113 (117)
|.-|-|...|+ +.|+++||--+
T Consensus 2 qi~gLdt~~Pi-l~i~~~vf~G~ 23 (35)
T PF10419_consen 2 QILGLDTENPI-LQIGNQVFEGE 23 (35)
T ss_pred EEeccCCCCCE-EEECCEEEEEE
Confidence 34567777788 99999999654
No 35
>PF06078 DUF937: Bacterial protein of unknown function (DUF937); InterPro: IPR009282 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 1Z67_A.
Probab=35.51 E-value=77 Score=22.59 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 045369 6 AAVMDTVTTYTGLSPAAFFTILALMCVV 33 (117)
Q Consensus 6 ~~~~~~i~~~tglsp~~~~tila~~~~v 33 (117)
+.+.+.|..+||+++-....+++.++.+
T Consensus 102 ~~~~~~lA~~tGl~~~~~~~lL~~~lP~ 129 (137)
T PF06078_consen 102 DDVIQQLAQQTGLSPDSAQQLLAMLLPL 129 (137)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5688999999999999998888877654
No 36
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=33.90 E-value=1.1e+02 Score=21.05 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhccCC
Q 045369 18 LSPAAFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~~~f~~~ 44 (117)
+-...+|.++.+++.+.+++++.|..+
T Consensus 17 ~GM~~VF~fL~lLi~~~~l~~~~~~~~ 43 (85)
T PRK03814 17 TGMGVVFIFLTLLVYLVQLMSKLIPQE 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 447788888899999999999998543
No 37
>PF11662 DUF3263: Protein of unknown function (DUF3263); InterPro: IPR021678 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.58 E-value=62 Score=22.06 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=16.8
Q ss_pred HHHHHHhhCCChHHHHHHHHHH
Q 045369 9 MDTVTTYTGLSPAAFFTILALM 30 (117)
Q Consensus 9 ~~~i~~~tglsp~~~~tila~~ 30 (117)
-++|..-.||||...+-.|..+
T Consensus 25 e~aIre~fGls~~rYyq~Ln~L 46 (77)
T PF11662_consen 25 EEAIREEFGLSPTRYYQRLNAL 46 (77)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3789999999998877665443
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.45 E-value=47 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045369 24 FTILALMCVVYKTVCSM 40 (117)
Q Consensus 24 ~tila~~~~vY~~v~~~ 40 (117)
|++|++++++.+++++-
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56666677777777644
No 39
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=33.24 E-value=48 Score=23.36 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=12.5
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 glG~~eLlIIlvIvLLlF 20 (89)
T PRK03554 3 GISIWQLLIIAVIVVLLF 20 (89)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 677877777766666654
No 40
>PF13068 DUF3932: Protein of unknown function (DUF3932)
Probab=32.76 E-value=32 Score=23.46 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhCCC
Q 045369 5 FAAVMDTVTTYTGLS 19 (117)
Q Consensus 5 ~~~~~~~i~~~tgls 19 (117)
|.++||-|..||-.-
T Consensus 32 wttlkeliheytt~h 46 (81)
T PF13068_consen 32 WTTLKELIHEYTTSH 46 (81)
T ss_pred hhHHHHHHHHHhccc
Confidence 999999999999765
No 41
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=32.59 E-value=69 Score=19.89 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIY 110 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VY 110 (117)
..|..+|.++-|-+ ...|-++++|++-
T Consensus 14 ~~tv~~ll~~l~~~-~~~i~V~vNg~~v 40 (65)
T cd00565 14 GATLAELLEELGLD-PRGVAVALNGEIV 40 (65)
T ss_pred CCCHHHHHHHcCCC-CCcEEEEECCEEc
Confidence 46788998888877 5679999999984
No 42
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=32.32 E-value=43 Score=24.55 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhc
Q 045369 17 GLSPAAFFTILALMCVVYKTVCSMF 41 (117)
Q Consensus 17 glsp~~~~tila~~~~vY~~v~~~f 41 (117)
|++++.|+..++..++++.++..++
T Consensus 5 ~~~~~~~~~~~inflil~~lL~~fl 29 (164)
T PRK14473 5 GINLGLLIAQLINFLLLIFLLRTFL 29 (164)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776665444444444444444
No 43
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=32.31 E-value=64 Score=24.10 Aligned_cols=16 Identities=19% Similarity=-0.049 Sum_probs=11.7
Q ss_pred ccCCCC-HHHHhhccCC
Q 045369 80 QLGEVT-EHELRAYDGS 95 (117)
Q Consensus 80 ~~~~fT-~eeL~~ydG~ 95 (117)
..+.|+ .|||..++=+
T Consensus 48 ~V~lY~~~eel~~~~~~ 64 (133)
T PRK10781 48 PVRLYTNAEELVGKPFR 64 (133)
T ss_pred ceEEEcCHHHHcCCCCc
Confidence 346799 5999888743
No 44
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=32.30 E-value=1e+02 Score=17.55 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccC
Q 045369 19 SPAAFFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 19 sp~~~~tila~~~~vY~~v~~~f~~ 43 (117)
|-..+..++++++++-|++.-++.+
T Consensus 2 s~~vi~G~ilv~lLlgYLvyALi~a 26 (29)
T PRK14748 2 SAGVITGVLLVFLLLGYLVYALINA 26 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666667666643
No 45
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.15 E-value=62 Score=23.73 Aligned_cols=23 Identities=0% Similarity=0.125 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 045369 21 AAFFTILALMCVVYKTVCSMFVD 43 (117)
Q Consensus 21 ~~~~tila~~~~vY~~v~~~f~~ 43 (117)
..|+.++++.++++|+++++-..
T Consensus 72 gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666777777887777654
No 46
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=31.97 E-value=53 Score=22.22 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=12.3
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 g~g~~elliIl~i~lllF 20 (74)
T PRK01833 3 GISIWQLLIIVAIIVLLF 20 (74)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 678887777766665554
No 47
>PLN02822 serine palmitoyltransferase
Probab=31.60 E-value=1.7e+02 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 045369 22 AFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 22 ~~~tila~~~~vY~~v~~~f~~~ 44 (117)
.++=++++++++|++.++-+..+
T Consensus 38 ~~~e~~l~~~~~~~~~~~~~~~~ 60 (481)
T PLN02822 38 LVVEGLLIVVIVFLLSQKSYKPP 60 (481)
T ss_pred hHHHHHHHHHHHHHHHcCcCCCC
Confidence 45557888889999988887654
No 48
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=31.01 E-value=55 Score=20.59 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVV 33 (117)
Q Consensus 17 glsp~~~~tila~~~~v 33 (117)
|++++-++.|+++++++
T Consensus 2 gig~~elliI~vi~llv 18 (51)
T PRK01470 2 GMSFSHLLIVLLIIFVL 18 (51)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 67787777666665554
No 49
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=30.81 E-value=73 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 045369 20 PAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 20 p~~~~tila~~~~vY~~v~ 38 (117)
..+|.+|+++++++|.++-
T Consensus 32 fvnf~lilicllli~iivm 50 (52)
T TIGR01294 32 FINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887763
No 50
>PF05480 Staph_haemo: Staphylococcus haemolytic protein; InterPro: IPR008846 This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus []. Gonococcal growth inhibitor from Staphylococcus acts on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death [].; GO: 0009405 pathogenesis
Probab=30.60 E-value=1.3e+02 Score=18.43 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHhhCCChHHHHH
Q 045369 1 MVAFFAAVMDTVTTYTGLSPAAFFT 25 (117)
Q Consensus 1 ~~~~~~~~~~~i~~~tglsp~~~~t 25 (117)
|..|.++++.++++-..-.-+.+-+
T Consensus 1 M~~l~eAI~n~V~Ag~~~Dwa~lgt 25 (43)
T PF05480_consen 1 MSKLFEAIKNTVQAGQNQDWAKLGT 25 (43)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHH
Confidence 7889999999999866555555555
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=30.53 E-value=95 Score=25.48 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=16.6
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHH
Q 045369 11 TVTTYTGLSPAAFFTILALMCVVYK 35 (117)
Q Consensus 11 ~i~~~tglsp~~~~tila~~~~vY~ 35 (117)
.+.+|.|+|-..+..+.+++.++|+
T Consensus 214 ~laayl~l~~l~iAiig~~~A~i~~ 238 (265)
T TIGR00822 214 LFAAYTDFSLLAFGAVGGAGALLYI 238 (265)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 5789999987665555555555554
No 52
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=30.21 E-value=53 Score=29.78 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=25.7
Q ss_pred cccCCCCHHHHhhccCCCCCCCeEEEECCeEEEecC
Q 045369 79 VQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (117)
Q Consensus 79 ~~~~~fT~eeL~~ydG~d~~~pi~lAi~G~VYDVt~ 114 (117)
+|.+-...++.-++||.. ||++++|+||-+..
T Consensus 96 VQVkGvDE~DivKtdG~~----iy~s~~~KvYvi~~ 127 (603)
T COG4880 96 VQVKGVDEEDIVKTDGER----IYVSVNGKVYVIDK 127 (603)
T ss_pred ceEccCCchhhcccCCcE----EEEEeCCeEEEEcC
Confidence 455667788888888855 99999999998754
No 53
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=29.46 E-value=95 Score=19.23 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIY 110 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VY 110 (117)
..|..+|.+.-|-+ .+.+-+++||++-
T Consensus 13 ~~tv~~ll~~l~~~-~~~v~v~vN~~iv 39 (64)
T TIGR01683 13 GLTLAALLESLGLD-PRRVAVAVNGEIV 39 (64)
T ss_pred CCcHHHHHHHcCCC-CCeEEEEECCEEc
Confidence 46889999888877 4689999999984
No 54
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=28.84 E-value=59 Score=21.55 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=12.5
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 ~ig~~elliIlvI~lllF 20 (67)
T PRK03625 3 EISITKLLVVAALVVLLF 20 (67)
T ss_pred CCcHHHHHHHHHHHHHHc
Confidence 577877777777666554
No 55
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=28.82 E-value=1.6e+02 Score=18.82 Aligned_cols=32 Identities=19% Similarity=0.636 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHH
Q 045369 2 VAFFAAVMDTVTTY-TGLSPAAFFTILALMCVV 33 (117)
Q Consensus 2 ~~~~~~~~~~i~~~-tglsp~~~~tila~~~~v 33 (117)
-++|+++.+.+..+ -.++|.....++-.++.+
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l 51 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCLL 51 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 36899999999999 788898877765554443
No 56
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=28.68 E-value=81 Score=19.56 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYD 111 (117)
..|..+|.++-|-+ .+.+-+|+||+|..
T Consensus 14 ~~tl~~Ll~~l~~~-~~~vavavN~~iv~ 41 (65)
T PRK06488 14 ATTLALLLAELDYE-GNWLATAVNGELVH 41 (65)
T ss_pred cCcHHHHHHHcCCC-CCeEEEEECCEEcC
Confidence 35889999888877 46788999999965
No 57
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.67 E-value=61 Score=24.19 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 045369 26 ILALMCVVYKTVCSMF 41 (117)
Q Consensus 26 ila~~~~vY~~v~~~f 41 (117)
++++++++|.++++.|
T Consensus 129 ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 129 LLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3555667777777765
No 58
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=28.46 E-value=63 Score=22.59 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=11.8
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 GlG~~ELLIIlvIvLLLF 20 (85)
T PRK01614 3 GLSITKLLVVGILIVLLF 20 (85)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 677877776666655543
No 59
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=28.30 E-value=58 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=9.4
Q ss_pred CCCeEEEECCeEEEecCCC
Q 045369 98 NKPLLMAIKGQIYDVSRSR 116 (117)
Q Consensus 98 ~~pi~lAi~G~VYDVt~gr 116 (117)
++.-++. |.+||+...|
T Consensus 41 dg~yli~--G~l~d~~~~~ 57 (57)
T PF10411_consen 41 DGRYLIQ--GQLYDLKTKK 57 (57)
T ss_dssp TSSEEEE--S-EEE-TTTS
T ss_pred CCCEEEE--eEEEecCCCC
Confidence 3344443 9999998764
No 60
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.01 E-value=45 Score=25.98 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 045369 21 AAFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 21 ~~~~tila~~~~vY~~v~~~f~~~ 44 (117)
+.||-.++..+++|+++++++-+|
T Consensus 54 ~~l~w~~I~FliL~~lL~k~~~~p 77 (204)
T PRK09174 54 SQLLWLAITFGLFYLFMSRVILPR 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666677777777777776543
No 61
>PTZ00046 rifin; Provisional
Probab=27.62 E-value=94 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 045369 18 LSPAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~ 38 (117)
.|-.+++.|+++++.+|++++
T Consensus 319 aSiiAIvVIVLIMvIIYLILR 339 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILR 339 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888898887
No 62
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.62 E-value=71 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 045369 18 LSPAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~ 38 (117)
.|-.+++.|+++++.+|++++
T Consensus 314 aSiIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888898887
No 63
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=27.52 E-value=70 Score=19.53 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=10.4
Q ss_pred CCChHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVV 33 (117)
Q Consensus 17 glsp~~~~tila~~~~v 33 (117)
|++++-++.++++++++
T Consensus 1 gig~~ElliI~vi~llv 17 (47)
T TIGR01411 1 GLSPPEWLIILVVILLL 17 (47)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56677666666655553
No 64
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.87 E-value=1.2e+02 Score=18.96 Aligned_cols=27 Identities=30% Similarity=0.146 Sum_probs=21.7
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIY 110 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VY 110 (117)
..|..+|.+.-|.+ .+.|-+|+||+|.
T Consensus 15 ~~tl~~ll~~l~~~-~~~vaVavN~~iv 41 (66)
T PRK08053 15 GQTVHELLEQLNQL-QPGAALAINQQII 41 (66)
T ss_pred CCCHHHHHHHcCCC-CCcEEEEECCEEe
Confidence 47888888877766 4579999999994
No 65
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=1.1e+02 Score=22.44 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=12.2
Q ss_pred HHHhhCCChHHHHHHH
Q 045369 12 VTTYTGLSPAAFFTIL 27 (117)
Q Consensus 12 i~~~tglsp~~~~til 27 (117)
+.+|.|.|||-++..+
T Consensus 66 lD~~agTsPwglIv~l 81 (116)
T COG5336 66 LDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHhcCCCcHHHHHHH
Confidence 4688999999876643
No 66
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.39 E-value=92 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhcc
Q 045369 17 GLSPAAFFTILALMCVVYKTVCSMFV 42 (117)
Q Consensus 17 glsp~~~~tila~~~~vY~~v~~~f~ 42 (117)
-|||+..+.+.++++++++.+++.|.
T Consensus 177 ~l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 177 VLPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47788888888999999999888763
No 67
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=25.42 E-value=76 Score=23.09 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhc
Q 045369 18 LSPAAFFTILALMCVVYKTVCSMF 41 (117)
Q Consensus 18 lsp~~~~tila~~~~vY~~v~~~f 41 (117)
+++.+|+..++..++++.++..++
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~ 26 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFF 26 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555554444444444444443
No 68
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.83 E-value=2.2e+02 Score=19.12 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=12.3
Q ss_pred CCCcccCCCCHHHHhhc
Q 045369 76 PETVQLGEVTEHELRAY 92 (117)
Q Consensus 76 ~~p~~~~~fT~eeL~~y 92 (117)
..+.-...+|++|.+.+
T Consensus 46 ~d~~F~D~lTpDQirAl 62 (70)
T PHA02902 46 DDPLFKDSLTPDQIKAL 62 (70)
T ss_pred CCchhhccCCHHHHHHH
Confidence 44555678999998765
No 69
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=57 Score=24.63 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=16.2
Q ss_pred CCCHHHHhhccC------C-CCCCCeEEEEC
Q 045369 83 EVTEHELRAYDG------S-DPNKPLLMAIK 106 (117)
Q Consensus 83 ~fT~eeL~~ydG------~-d~~~pi~lAi~ 106 (117)
-+|+|||++|+- . ...+.-||+|.
T Consensus 79 FLT~eElkkY~ks~~rWg~r~kkkkpWmvi~ 109 (145)
T COG2028 79 FLTPEELKKYMKSRKRWGSRGKKKKPWMVIE 109 (145)
T ss_pred ecCHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 489999999983 2 12345677763
No 70
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=24.61 E-value=51 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCCChHHH
Q 045369 5 FAAVMDTVTTYTGLSPAAF 23 (117)
Q Consensus 5 ~~~~~~~i~~~tglsp~~~ 23 (117)
|+.||+-|...||.+|..+
T Consensus 25 v~~lK~kl~~~~G~~~~~m 43 (84)
T cd01789 25 IAELKKKLELVVGTPASSM 43 (84)
T ss_pred HHHHHHHHHHHHCCCccce
Confidence 5789999999999988654
No 71
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.33 E-value=1.4e+02 Score=18.34 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYD 111 (117)
..|..+|.+.-|-+ ...+-++++|.|+.
T Consensus 15 ~~tl~~lL~~l~~~-~~~vav~vNg~iv~ 42 (66)
T PRK05659 15 GESVAALLAREGLA-GRRVAVEVNGEIVP 42 (66)
T ss_pred CCCHHHHHHhcCCC-CCeEEEEECCeEeC
Confidence 37889999888877 56788999998875
No 72
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.13 E-value=1.2e+02 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCHHHHhhccCCCCCCCeEEEECCeEE
Q 045369 84 VTEHELRAYDGSDPNKPLLMAIKGQIY 110 (117)
Q Consensus 84 fT~eeL~~ydG~d~~~pi~lAi~G~VY 110 (117)
.|..+|-+.-|-+ .+.+-+++||.|.
T Consensus 17 ~tv~~lL~~l~~~-~~~vav~vN~~iv 42 (67)
T PRK07696 17 KTVAELLTHLELD-NKIVVVERNKDIL 42 (67)
T ss_pred ccHHHHHHHcCCC-CCeEEEEECCEEe
Confidence 5788998888887 5689999999985
No 73
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=23.92 E-value=90 Score=20.41 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=11.5
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 giG~~ElliIlvv~Llvf 20 (63)
T PRK14859 3 GIGMPELIVILVIVLIVF 20 (63)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 566776666666666554
No 74
>PHA00736 hypothetical protein
Probab=23.62 E-value=1.3e+02 Score=20.49 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=21.1
Q ss_pred HHHhhCCChH-HHHHHHHHHHHHHHHHHhh
Q 045369 12 VTTYTGLSPA-AFFTILALMCVVYKTVCSM 40 (117)
Q Consensus 12 i~~~tglsp~-~~~tila~~~~vY~~v~~~ 40 (117)
+.--|||-|. +++.+++.+-+.|++.-++
T Consensus 7 lal~tglgpvi~viiil~mmgltykmagki 36 (79)
T PHA00736 7 LALQTGLGPVIAIIIILAMMGLTYKMAGKI 36 (79)
T ss_pred HHHHcCCccHHHHHHHHHHHhhHHHHhCCc
Confidence 3446899996 5666777888888886644
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.36 E-value=82 Score=23.40 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=12.8
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHhhc
Q 045369 16 TGLSPAAFFTILALMCVVYKTVCSMF 41 (117)
Q Consensus 16 tglsp~~~~tila~~~~vY~~v~~~f 41 (117)
.+.+|..||-.++..+++|.++..++
T Consensus 14 ~~~~~~~~~~~~i~Flil~~lL~~~l 39 (175)
T PRK14472 14 LSPNPGLIFWTAVTFVIVLLILKKIA 39 (175)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566566554444444444444443
No 76
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.21 E-value=71 Score=24.15 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 045369 22 AFFTILALMCVVYKTVCSMFVDP 44 (117)
Q Consensus 22 ~~~tila~~~~vY~~v~~~f~~~ 44 (117)
.+|-.++..+++|+++++++-+|
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~P 55 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPR 55 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666665443
No 77
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=23.08 E-value=92 Score=21.65 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=12.0
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 2 ~ig~~ElliI~vI~lllF 19 (84)
T PRK00191 2 SLGPWEIGIIVLLIIVLF 19 (84)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 677777777666665554
No 78
>PRK07440 hypothetical protein; Provisional
Probab=22.96 E-value=1.6e+02 Score=18.99 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYD 111 (117)
..|..+|-+.-|-+ .+.|-+++||.|..
T Consensus 19 ~~tl~~lL~~l~~~-~~~vav~~N~~iv~ 46 (70)
T PRK07440 19 GTSLPDLLQQLGFN-PRLVAVEYNGEILH 46 (70)
T ss_pred CCCHHHHHHHcCCC-CCeEEEEECCEEeC
Confidence 47888988877777 56899999999965
No 79
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.62 E-value=2.1e+02 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHH
Q 045369 10 DTVTTYTGLSPAAFFTILALMCVVYK 35 (117)
Q Consensus 10 ~~i~~~tglsp~~~~tila~~~~vY~ 35 (117)
.+-++-.|++|..+-++++.+++...
T Consensus 6 sAFqA~SG~~p~~l~~l~lG~~~~vl 31 (65)
T TIGR03758 6 SAFQAASGIDPQAMNTLILGLVLAVL 31 (65)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45677799999988886555444433
No 80
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=22.44 E-value=1e+02 Score=25.09 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=11.0
Q ss_pred CCChHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCV 32 (117)
Q Consensus 17 glsp~~~~tila~~~~ 32 (117)
|-||++.|+++|++.+
T Consensus 9 G~~~~~~~~~~~~~~~ 24 (243)
T PF05279_consen 9 GSSFFTWFLVLALLGV 24 (243)
T ss_pred CCchHHHHHHHHHHHH
Confidence 5678777777776543
No 81
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=22.40 E-value=77 Score=18.74 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.9
Q ss_pred CCCCHHHHhhcc
Q 045369 82 GEVTEHELRAYD 93 (117)
Q Consensus 82 ~~fT~eeL~~yd 93 (117)
.+.|+|||++|=
T Consensus 10 ~~a~~e~l~~Y~ 21 (36)
T smart00309 10 DDASPEDLRQYL 21 (36)
T ss_pred CCCCHHHHHHHH
Confidence 578999999984
No 82
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.10 E-value=1.5e+02 Score=20.03 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=22.7
Q ss_pred CCCHHHHhhccCCCCCCCeEEEECCeEEE
Q 045369 83 EVTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (117)
Q Consensus 83 ~fT~eeL~~ydG~d~~~pi~lAi~G~VYD 111 (117)
..|..+|-..-+-+ .+.|-+++||.|..
T Consensus 33 ~~tl~~LL~~l~~~-~~~vAVevNg~iVp 60 (84)
T PRK06083 33 SSSLAQIIAQLSLP-ELGCVFAINNQVVP 60 (84)
T ss_pred CCcHHHHHHHcCCC-CceEEEEECCEEeC
Confidence 47888888877776 67899999999863
No 83
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=21.39 E-value=99 Score=21.80 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHHHHHH
Q 045369 17 GLSPAAFFTILALMCVVY 34 (117)
Q Consensus 17 glsp~~~~tila~~~~vY 34 (117)
|++++-++.|++++++++
T Consensus 3 ~~g~~elliIlvIvlllF 20 (92)
T PRK00442 3 IFDWKHWIVILVVVVLVF 20 (92)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 467777777666666554
No 84
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=21.38 E-value=1.3e+02 Score=19.73 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCHHHHhhccCCCCCCCeEEEECCeEEE
Q 045369 84 VTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (117)
Q Consensus 84 fT~eeL~~ydG~d~~~pi~lAi~G~VYD 111 (117)
.|.++|-+--|-+ ...+-+++||.|..
T Consensus 18 ~tv~dLL~~l~~~-~~~vav~vNg~iVp 44 (68)
T COG2104 18 TTVADLLAQLGLN-PEGVAVAVNGEIVP 44 (68)
T ss_pred CcHHHHHHHhCCC-CceEEEEECCEEcc
Confidence 7889999999988 67899999999864
No 85
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=21.33 E-value=1.1e+02 Score=21.87 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.4
Q ss_pred CCCeEEEECCeEEEecCCC
Q 045369 98 NKPLLMAIKGQIYDVSRSR 116 (117)
Q Consensus 98 ~~pi~lAi~G~VYDVt~gr 116 (117)
++++=|-+.|.+|||+.|-
T Consensus 77 SGkv~l~iG~~~~dV~~G~ 95 (131)
T PF05132_consen 77 SGKVTLKIGGVVFDVSPGT 95 (131)
T ss_pred CCcEEEEECCEEEEecCCC
Confidence 5678899999999999884
No 86
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=2.5e+02 Score=18.21 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q 045369 5 FAAVMDTVTTYTGLSPAAFFTILALMCVVYKTVC 38 (117)
Q Consensus 5 ~~~~~~~i~~~tglsp~~~~tila~~~~vY~~v~ 38 (117)
|+++++.+.+ -.+++..++.++++|+..+
T Consensus 3 ~e~~~~~a~a-----~~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 3 YEMMRGFADA-----WGTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 5666665544 3344444444555555543
No 87
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=59 Score=29.20 Aligned_cols=16 Identities=19% Similarity=0.646 Sum_probs=12.7
Q ss_pred CCeEEEECCeEEEecC
Q 045369 99 KPLLMAIKGQIYDVSR 114 (117)
Q Consensus 99 ~pi~lAi~G~VYDVt~ 114 (117)
...|....|+|||+|.
T Consensus 377 ~tyy~c~DgkVYDITe 392 (490)
T KOG0720|consen 377 PTYYACMDGKVYDITE 392 (490)
T ss_pred ceeeeecCCceEeehh
Confidence 3577788899999984
No 88
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=20.21 E-value=54 Score=21.92 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Q 045369 5 FAAVMDTVTTYTGLSPAAFFTILALMCVVYKTVCSM 40 (117)
Q Consensus 5 ~~~~~~~i~~~tglsp~~~~tila~~~~vY~~v~~~ 40 (117)
|+|+|++=..-.-++-.-++.....+...|..++.+
T Consensus 24 WDaVk~Tt~~d~l~a~~~I~~~g~~~~~~y~ffs~L 59 (66)
T PF11100_consen 24 WDAVKETTASDILEAVFFILASGFMLFILYCFFSAL 59 (66)
T ss_pred eccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667766422211111222222334455556555544
No 89
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=20.04 E-value=76 Score=22.65 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=13.5
Q ss_pred CCCHHHHhhcc------CC-CCCCCeEEEEC
Q 045369 83 EVTEHELRAYD------GS-DPNKPLLMAIK 106 (117)
Q Consensus 83 ~fT~eeL~~yd------G~-d~~~pi~lAi~ 106 (117)
-+|+|||++|. |. ...+.-||+|.
T Consensus 41 FLT~eE~r~Y~~~~~Rwg~~~~r~rpwmvi~ 71 (97)
T PF04033_consen 41 FLTKEELRKYERSRKRWGSGGKRKRPWMVIE 71 (97)
T ss_dssp SS-HHHHHHHHHHHHHTSS--SS---EEEEE
T ss_pred ecCHHHHHHHHhhHHhhccCCCCCCceEEEE
Confidence 48999999997 22 22445778774
Done!