BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045370
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 44/187 (23%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ FS DG + S SDD + +W+ L QT L HS
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 385
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
SSV G+ G T S+S D T K+W+ +G L+QT + +V +AF P +Q
Sbjct: 386 ----SSVRGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQ 439
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
+ + S D + + LL+ L GH+ S+ +AFS + SAS+D
Sbjct: 440 TIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 178 KTVCLWD 184
KTV LW+
Sbjct: 489 KTVKLWN 495
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 44/187 (23%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ FS DG + S SDD + +W+ L QT L HS
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 221
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
SSV G+ G T S+S D T K+W+ +G L+QT + +V +AF P Q
Sbjct: 222 ----SSVRGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
+ + S D + + LL+ L GH+ S+ +AFS + SAS+D
Sbjct: 276 TIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 178 KTVCLWD 184
KTV LW+
Sbjct: 325 KTVKLWN 331
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 44/187 (23%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ FS DG + S SDD + +W+ L QT L HS
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 57
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
SSV G+ G T S+S D T K+W+ +G L+QT + +V +AF P Q
Sbjct: 58 ----SSVWGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 111
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
+ + S D + + LL+ L GH+ S+ +AFS + SAS+D
Sbjct: 112 TIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVWGVAFSPDGQTIASASDD 160
Query: 178 KTVCLWD 184
KTV LW+
Sbjct: 161 KTVKLWN 167
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 44/187 (23%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ FS DG + S SDD + +W+ L QT L HS
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 139
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
SSV G+ G T S+S D T K+W+ +G L+QT + +V +AF P Q
Sbjct: 140 ----SSVWGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
+ + S D + + LL+ L GH+ S+ +AFS + SAS+D
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 178 KTVCLWD 184
KTV LW+
Sbjct: 243 KTVKLWN 249
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL--------DQRLIEMXXXX 52
+ FS DG + S SDD + +W+ L QT L HS + DQ +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 53 XXXXXXXXXXXKSSVTGLLTISGGTTF------FVSSSLDATCKVWDLGSGILIQT-QVY 105
++TG + G F S+S D T K+W+ +G L+QT +
Sbjct: 449 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507
Query: 106 PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165
+V +AF P Q + + S D + + LL+ L GH+ S+ +A
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVWGVA 556
Query: 166 FS--ASHLISASEDKTVCLWD 184
FS + SAS DKTV LW+
Sbjct: 557 FSPDGQTIASASSDKTVKLWN 577
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 42/186 (22%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ F DG + S SDD + +W+ L QT L HS
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 303
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
SSV G+ G T S+S D T K+W+ L + +V +AF P Q
Sbjct: 304 ----SSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDK 178
+ + S D + + LL+ L GH+ S+ +AFS + SAS+DK
Sbjct: 359 IASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 179 TVCLWD 184
TV LW+
Sbjct: 408 TVKLWN 413
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Query: 80 FVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLFAGSIDGRIFV----SP 134
++ S D+T +VWD+ +G ++ T ++ +AV + F+ G ++ S D I V SP
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASP 243
Query: 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
L VL GH ++ + F +++SAS D+T+ +W+ + +R
Sbjct: 244 TDITL-----------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 195 N-HKKGVV 201
N HK+G+
Sbjct: 293 NGHKRGIA 300
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSID 127
G+ + VS S D T ++WD+ G ++ + + + V I F + + +G+ D
Sbjct: 298 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 355
Query: 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWD 184
G+I V L L+ G L H+G + L F ++S+S D T+ +WD
Sbjct: 356 GKIKVWDL-VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 411
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 153 VLKGHNGSITALAFSASHLISASEDKTVCLWDVT 186
+L GH GS+ L + +I+ S D TV +WDV
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
+ VS+S D T KVW+ + ++T + + + + + ++L+ +GS D I +
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI-----RL 320
Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV 185
+E + VL+GH + + F ++S + D + +WD+
Sbjct: 321 WDIECGACL-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136
+ VS+S DAT KVWD +G +T + + +V I+F +LL + S D I + +
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRF 194
G + + GH+ ++++++ + H++SAS DKT+ +W+V ++ F
Sbjct: 181 ----------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 195 NHKKGVVTNLVVIRQSSLLSEVSNCQ 220
+ V + + +L++ SN Q
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQ 256
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDG--RIFV---SP 134
VS+S D T K+W++ +G ++T + + V + + L+ + S D R++V
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
Query: 135 LKFLLLEDHFIV------GEDQHSVLKGHNGSITALAFS-ASHLISASEDKTVCLWDVT 186
K L E +V E +S + GS T + L+S S DKT+ +WDV+
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 67/204 (32%)
Query: 6 DGFLLISGSDDGMICVWSM-TRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DG L+ S S+D + VW + T+ K +EL H + ++E
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECK--AELREH-----RHVVECISWAPESSYSSI---- 293
Query: 65 SSVTGLLTISGGTT--FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF 122
S TG T G F +S S D T K+WD+ +G+ + T V
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV------------------ 335
Query: 123 AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTV 180
GH+ + + F ++S ++DKT+
Sbjct: 336 ---------------------------------GHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 181 CLWDVTRRVSIRRFNHKKGVVTNL 204
+WD + ++ N + VT+L
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSL 386
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 153 VLKGHNGSITALAFSA--SHLISASEDKTVCLWD 184
L GH +T + F S ++SASED T+ +WD
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
+ FS DG L +G++D +I +W ++ R I M
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIW-----------------DIENRKIVMILQGH------- 164
Query: 61 XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-Q 119
+ + L G VS S D T ++WDL +G T VT +A PG+ +
Sbjct: 165 ---EQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 120 LLFAGSIDG--RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISAS 175
+ AGS+D R++ S FL+ + E++ GH S+ ++ F+ ++S S
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLV---ERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGS 275
Query: 176 EDKTVCLWDV 185
D++V LW++
Sbjct: 276 LDRSVKLWNL 285
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 109 VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF-- 166
+ ++ F P + L G+ D I + +E+ IV +L+GH I +L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLI-----RIWDIENRKIV-----MILQGHEQDIYSLDYFP 175
Query: 167 SASHLISASEDKTVCLWDV 185
S L+S S D+TV +WD+
Sbjct: 176 SGDKLVSGSGDRTVRIWDL 194
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140
VS SLD + +VWD+ +G I T Q++T+ + +L +G+ D + + +K
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIK---- 347
Query: 141 EDHFIVGEDQHSVLKG---HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
G+ + L+G H ++T L F+ + +I++S+D TV LWD+ IR
Sbjct: 348 -----TGQCLQT-LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139
VS S DAT +VWD+ +G + + + AV + + DGR VS +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------------DGRRVVSGAYDFM 260
Query: 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV 185
++ E L+GH + +L F H++S S D ++ +WDV
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
VS S D T KVW +G ++T V + V + + ++ +GS D LK
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD-----RTLKVW 184
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV 185
E GE H+ L GH ++ + ++S S D T+ +WD+
Sbjct: 185 NAE----TGECIHT-LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 153 VLKGHNGS-ITALAFSASHLISASEDKTVCLWDVTRRVSIRRF-NHKKGV 200
VLKGH+ IT L F + ++S S+D T+ +W +R H GV
Sbjct: 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 162
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 80 FVSSSLDATCKVWDLGSGILIQTQVYPQA----------VTAIAFHPGEQLLFAGSIDGR 129
F + S D TC+++D+ +G Q QVY + VT++AF +LLFAG +G
Sbjct: 264 FGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLW 183
+V LL E +G Q+S H G I+ L S S L + S DK + +W
Sbjct: 322 CYV--WDTLLAEMVLNLGTLQNS----HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 79 FFVSSSLDATCKVWD-LGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
+ VS+S D VW+ L S +++ V AF P Q + G +D + L
Sbjct: 80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAF---SASHLISASEDKTVCLWDVT--RRVSIR 192
D + VL GH G ++ + + LI+ S D+T LWDVT +R+SI
Sbjct: 140 QADRDGNM---PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196
Query: 193 RFNHKKGVVTNLVVIRQSSL 212
G +++ + +SL
Sbjct: 197 GSEFPSGHTADVLSLSINSL 216
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
L+++ T FVS + DA+ K+WD+ G+ QT + + AI F P GS D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
+ F L D ++ +++ G IT+++FS S L++ +D +WD
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 80 FVSSSLDATCKVWDL-GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
V+SS D TC +WD+ + V +++ P +L +G+ D + ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNH 196
+ F GH I A+ F + + + S+D T L+D+ + ++H
Sbjct: 217 MCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 197 KKGV--VTNLVVIRQSSLL---SEVSNCQ--RKLKKDRMPSLEKYPQ 236
+ +T++ + LL + NC LK DR L +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
VS+S D +WD S + P V A+ P + G +D + L
Sbjct: 69 LLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDKTVCLWDV 185
K E + V + L GH G ++ F + ++++S D T LWD+
Sbjct: 127 K--TREGNVRVSRE----LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
L+++ T FVS + DA+ K+WD+ G+ QT + + AI F P GS D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
+ F L D ++ +++ G IT+++FS S L++ +D +WD
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 80 FVSSSLDATCKVWDL-GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
V+SS D TC +WD+ + V +++ P +L +G+ D + ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNH 196
+ F GH I A+ F + + + S+D T L+D+ + ++H
Sbjct: 217 MCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 197 KKGV--VTNLVVIRQSSLL---SEVSNCQ--RKLKKDRMPSLEKYPQ 236
+ +T++ + LL + NC LK DR L +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+S+S D +WD S + P V A+ P + G +D + L
Sbjct: 69 LLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDKTVCLWDV 185
K E + V + L GH G ++ F + ++++S D T LWD+
Sbjct: 127 K--TREGNVRVSRE----LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
L+++ T FVS + DA+ K+WD+ G+ QT + + AI F P GS D
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR 187
+ F L D ++ +++ G IT+++FS S L++ +D +WD +
Sbjct: 261 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 20/165 (12%)
Query: 80 FVSSSLDATCKVWDL-GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
V+SS D TC +WD+ + V +++ P +L +G+ D + ++
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNH 196
+ F GH I A+ F + + + S+D T L+D+ + ++H
Sbjct: 228 MCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 277
Query: 197 KKGV--VTNLVVIRQSSLL---SEVSNCQ--RKLKKDRMPSLEKY 234
+ +T++ + LL + NC LK DR L +
Sbjct: 278 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
VS+S D +WD S + P V A+ P + G +D + L
Sbjct: 80 LLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 137
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDKTVCLWDV 185
K E + V + L GH G ++ F + ++++S D T LWD+
Sbjct: 138 K--TREGNVRVSRE----LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 182
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
L+++ T FVS + DA+ K+WD+ G+ QT + + AI F P GS D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
+ F L D ++ +++ G IT+++FS S L++ +D +WD
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 80 FVSSSLDATCKVWDL-GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
V+SS D TC +WD+ + V +++ P +L +G+ D + ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNH 196
+ F GH I A+ F + + + S+D T L+D+ + ++H
Sbjct: 217 MCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 197 KKGV--VTNLVVIRQSSLL---SEVSNCQ--RKLKKDRMPSLEKYPQ 236
+ +T++ + LL + NC LK DR L +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+S+S D +WD S + P V A+ P + G +D + L
Sbjct: 69 LLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDKTVCLWDV 185
K E + V + L GH G ++ F + ++++S D T LWD+
Sbjct: 127 K--TREGNVRVSRE----LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
L+++ T FVS + DA+ K+WD+ G+ QT + + AI F P GS D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
+ F L D ++ +++ G IT+++FS S L++ +D +WD
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 80 FVSSSLDATCKVWDL-GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
V+SS D TC +WD+ + V +++ P +L +G+ D + ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNH 196
+ F GH I A+ F + + + S+D T L+D+ + ++H
Sbjct: 217 MCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 197 KKGV--VTNLVVIRQSSLL---SEVSNCQ--RKLKKDRMPSLEKYPQ 236
+ +T++ + LL + NC LK DR L +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
VS+S D +WD S + P V A+ P + G +D + L
Sbjct: 69 LLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDKTVCLWDV 185
K E + V + L GH G ++ F + ++++S D T LWD+
Sbjct: 127 K--TREGNVRVSRE----LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 80 FVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
FVS D VWD+ SG +Q + + V ++ ++P +GS D + L+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-- 270
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTR--RVSIRRFNH 196
D + + S++ G S + S L + D T+ +WDV + RVSI F H
Sbjct: 271 --ADREVAIYSKESIIFG--ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGH 325
Query: 197 KKGVVT 202
+ V T
Sbjct: 326 ENRVST 331
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
Q V + +HP ++LL + S D + + + ED ++ + L+GH ++ +LAF
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKL----YREEEDDWVCC----ATLEGHESTVWSLAF 202
Query: 167 --SASHLISASEDKTVCLW 183
S L S S+D+TV +W
Sbjct: 203 DPSGQRLASCSDDRTVRIW 221
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
F +S S D ++WDL +G+ + V + + V ++AF S+D R VS +
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF----------SLDNRQIVSASRD 493
Query: 138 LLLEDHFIVGEDQHSVLKGHNGS---ITALAFSASHL----ISASEDKTVCLWDVTRRVS 190
++ +GE ++++ +G G ++ + FS + L +SAS DKTV +W+++
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 191 IRRFNHKKGVVTNLVVIRQSSL 212
G V+ + V SL
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSL 575
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 32/209 (15%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMT------RLLKQTSELMHHSDQLDQR-LIEMXXXXX 53
+V S DG +SGS DG + +W + R + T +++ + LD R ++
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 54 XXXXXXXXXXKSSVT----------GLLTISGGT--TFFVSSSLDATCKVWDLGSGILIQ 101
K +++ + S T VS+S D T KVW+L + L
Sbjct: 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 102 TQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160
T + V+ +A P L +G DG + L + L E + + +SV
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVV----LLWDLAEGKKLYSLEANSV------- 604
Query: 161 ITALAFSAS-HLISASEDKTVCLWDVTRR 188
I AL FS + + + A+ + + +WD+ +
Sbjct: 605 IHALCFSPNRYWLCAATEHGIKIWDLESK 633
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 153 VLKG----HNGSITALAF---SASHLISASEDKTVCLWDVTR 187
VLKG H +TA+A +A ++SAS DK++ LW +T+
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTK 414
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 195 NHKKGVV 201
VV
Sbjct: 279 QGHTDVV 285
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 76
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
+ S ++D ++D+ +G L+ T + + + ++ F P QLL S DG I + ++
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRF 194
L L GH + +AF +H +S+S DK+V +WDV R + F
Sbjct: 238 ANLA----------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
SSSLDA ++WDL +G I++ P +AF P Q L G+ G++
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 195 NHKKGVV 201
VV
Sbjct: 279 QGHTDVV 285
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 76
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 299
Query: 195 NHKKGVV 201
VV
Sbjct: 300 QGHTDVV 306
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 97
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 195 NHKKGVV 201
VV
Sbjct: 293 QGHTDVV 299
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 90
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 297
Query: 195 NHKKGVV 201
VV
Sbjct: 298 QGHTDVV 304
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 95
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 195 NHKKGVV 201
VV
Sbjct: 276 QGHTDVV 282
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 73
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 195 NHKKGVV 201
VV
Sbjct: 276 QGHTDVV 282
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 73
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 195 NHKKGVV 201
VV
Sbjct: 279 QGHTDVV 285
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164
+ +AV+++ F P + L A S D I + + + F + GH I+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKI----WGAYDGKF------EKTISGHKLGISDV 74
Query: 165 AFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
A+S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 276
Query: 195 NHKKGVV 201
VV
Sbjct: 277 QGHTDVV 283
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 74
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 280
Query: 195 NHKKGVV 201
VV
Sbjct: 281 QGHTDVV 287
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 78
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 195 NHKKGVV 201
VV
Sbjct: 279 QGHTDVV 285
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164
+ +AV+++ F P + L + S D I + + + F + GH I+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDV 74
Query: 165 AFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
A+S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Query: 195 NHKKGVV 201
VV
Sbjct: 272 QGHTDVV 278
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 69
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 195 NHKKGVV 201
VV
Sbjct: 279 QGHTDVV 285
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164
+ +AV+++ F P + L + S D I + + + F + GH I+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDV 74
Query: 165 AFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
A+S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 195 NHKKGVV 201
VV
Sbjct: 282 QGHTDVV 288
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 79
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T ++S SED V +W++ + +++
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFA--NFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Query: 195 NHKKGVV 201
VV
Sbjct: 275 QGHTDVV 281
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 72
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 195 NHKKGVV 201
VV
Sbjct: 282 QGHTDVV 288
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 79
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPL 135
+ VSSS D C++WD SG ++T + V+ + F P + + A ++D + +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 136 -KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
K L+ + +++ + N S+T + ++S SED V +W++ + +++
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW----IVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 195 NHKKGVV 201
VV
Sbjct: 282 QGHTDVV 288
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
+AV+++ F P + L + S D I + + + F + GH I+ +A+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKF------EKTISGHKLGISDVAW 79
Query: 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
S+ L+SAS+DKT+ +WDV+ ++ V QS+L+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 82 SSSLDATCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139
S S D T ++W L T VY + ++ + ++LL G D I PL
Sbjct: 34 SVSRDGTVRLWSKDDQWL-GTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPL---- 88
Query: 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLW 183
GED L GH G++ +L+F +IS S DKT +W
Sbjct: 89 ---FATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW 129
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 154 LKGHNGSI---TALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS 210
L+ HN S+ ++FS + ++AS DKT+ LW + + H VV +L V+
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHND-VVRHLAVVDDG 196
Query: 211 SLLS 214
+S
Sbjct: 197 HFIS 200
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFH-----PGEQLLFAGSIDGRIF 131
T F SSS D T KVWD + L V+ T + H L+ G+ ++
Sbjct: 112 TGMFTSSSFDKTLKVWD--TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169
Query: 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR 188
+ LK G H +L+GH I A+++S + L +AS D V LWDV R
Sbjct: 170 LCDLK---------SGSCSH-ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 189 ----VSIRRFNHKK 198
+++ + N KK
Sbjct: 220 SGCLITLDQHNGKK 233
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASED 177
+L +GS D + + L +F + H L GHN ++ LA S + IS+S D
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGI---PHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 178 KTVCLWDVTRRVSIRRF 194
KT+ LWD+ + +RF
Sbjct: 98 KTLRLWDLRTGTTYKRF 114
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA-VTAIAFHP-GEQLLFAGS 125
L +S F +SSS D T ++WDL +G + V Q+ V ++AF P Q+L AG+
Sbjct: 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 154 LKGHNGSITALAFSAS---HLISASEDKTVCLWDVT 186
L+GH L+++++ HL+SAS+D TVCLWD+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN 210
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA--------VTAIAFHPGEQL 120
GL S + +S+S D T +WD+ +G V +A V +A+H +
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED 177
LF D + K ++ + ++ H + L+F+ L + S D
Sbjct: 244 LFGSVADDQ------KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 178 KTVCLWDV 185
KTV LWD+
Sbjct: 298 KTVALWDL 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 154 LKGHNGSITALAFSAS---HLISASEDKTVCLWDVT 186
L+GH L+++++ HL+SAS+D TVCLWD+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN 210
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA--------VTAIAFHPGEQL 120
GL S + +S+S D T +WD+ +G V +A V +A+H +
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED 177
LF D + K + + ++ H + L+F+ L + S D
Sbjct: 244 LFGSVADDQ------KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 178 KTVCLWDV 185
KTV LWD+
Sbjct: 298 KTVALWDL 305
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S++
Sbjct: 107 KSDVMSVDIDKKASMI 122
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 41/185 (22%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D M+ W++ + + + H+S+
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------------------------- 198
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + + T V ++AF P L A
Sbjct: 199 ---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 256 TATG------IKVFSLDPQYLV-DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 179 TVCLW 183
+ +W
Sbjct: 309 VIRVW 313
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 154 LKGHNGSITALAFS---ASHLISASEDKTVCLWDVT 186
L+GH L+++ + HL+SAS+D T+CLWD++
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S++
Sbjct: 107 KSDVMSVDIDKKASMI 122
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D M+ W++ + + + H+S+
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------------------------- 198
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + + T V ++AF P L A
Sbjct: 199 ---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 256 TATG------IKVFSLDPQYLV-DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 179 TVCLWDV 185
+ +W V
Sbjct: 309 VIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D M+ W++ + + + H+S+
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------------------------- 198
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + + T V ++AF P L A
Sbjct: 199 ---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 256 TATG------IKVFSLDPQYLV-DDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 179 TVCLWDV 185
+ +W V
Sbjct: 309 VIRVWQV 315
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S++
Sbjct: 107 KSDVMSVDIDKKASMI 122
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S++
Sbjct: 107 KSDVMSVDIDKKASMI 122
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D M+ W++ + + + H+S+
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------------------------- 198
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + + T V ++AF P L A
Sbjct: 199 ---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 256 TATG------IKVFSLDPQYLV-DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 179 TVCLWDV 185
+ +W V
Sbjct: 309 VIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 41 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S++
Sbjct: 101 KSDVMSVDIDKKASMI 116
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D M+ W++ + + + H+S+
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------------------------- 192
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + + T V ++AF P L A
Sbjct: 193 ---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 249
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 250 TATG------IKVFSLDPQYLV-DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 179 TVCLWDV 185
+ +W V
Sbjct: 303 VIRVWQV 309
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTA-----IAFHPGEQLLFAGSIDGRIFV--- 132
VS S D T +VWD+ G T V+ + I + + + GS D + V
Sbjct: 177 VSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 133 --------------SPLKFLLLEDH-FIVGEDQHSVLKGHNGSITALAFSASHLISASED 177
PL F E++ + VG VL+GH S+ ++ + ++S S D
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVG-----VLRGHXASVRTVSGHGNIVVSGSYD 289
Query: 178 KTVCLWDVTR 187
T+ +WDV +
Sbjct: 290 NTLIVWDVAQ 299
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 10 LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVTG 69
+++GS D + VW L + S + H ++ D L+ +SV
Sbjct: 220 IVTGSRDNTLHVWK----LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR- 274
Query: 70 LLTISGGTTFFVSSSLDATCKVWDLGSG--ILIQTQVYPQAVTAIAFHPGEQLLFAGSID 127
T+SG VS S D T VWD+ + I + + + I H ++ + A S D
Sbjct: 275 --TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA-SXD 331
Query: 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV-- 185
I + L+ GE ++ L+GH + L S L+SA+ D ++ WD
Sbjct: 332 TTIRIWDLE---------NGELXYT-LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Query: 186 -TRRVSIRRFN 195
+R+ S N
Sbjct: 382 YSRKFSYHHTN 392
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 154 LKGHNGSITALAFS-ASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSL 212
L GH+G + AL ++ L+S S D+TV +WD+ + F V L ++ ++
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVV 201
L+GHNG +T+LA SA L+SAS DKT+ W +T V +R F +V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 145 IVGEDQH-----SVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
+ G+DQ KGH+ + +A ++ +SAS DKT+ LWDV + +RF
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 198 KGVVTNLVVIRQSSLL 213
K V ++ + +++S +
Sbjct: 107 KSDVXSVDIDKKASXI 122
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXK 64
DD +IS +D + W++ + + + H+S+
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSN------------------------- 198
Query: 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
LT S T S+ D +W+L + T V ++AF P L A
Sbjct: 199 ---INTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS----ITALAFSASH--LISASEDK 178
+ G +K L+ ++V +D G++ + +LA+SA L + D
Sbjct: 256 TATG------IKVFSLDPQYLV-DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 179 TVCLWDV 185
+ +W V
Sbjct: 309 VIRVWQV 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR 187
LKGHNG +T +A + ++SAS DKT+ +W +TR
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 70
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLD------------------ 42
+ FS D ++SGS D I +W+ + K T + HS+ +
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 43 QRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
+L+++ + +T+S + S D +WDL G + T
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252
Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL----KGHN 158
+ A+ F P L A + +K LE IV E + V+ K
Sbjct: 253 LDGGDIINALCFSPNRYWLCAAT------GPSIKIWDLEGKIIVDELKQEVISTSSKAEP 306
Query: 159 GSITALAFSASH--LISASEDKTVCLWDVT 186
T+LA+SA L + D V +W VT
Sbjct: 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 109 VTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS 167
VT IA P ++ + S D I + + L D G Q + L+GH+ ++ + S
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIM----WKLTRDETNYGIPQRA-LRGHSHFVSDVVIS 95
Query: 168 AS--HLISASEDKTVCLWDVTRRVSIRRF-NHKKGVVT 202
+ +S S D T+ LWD+T + RRF H K V++
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS 133
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGR 129
+ IS F +S S D T ++WDL +G + V + + V ++AF + + +GS D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDV 185
I L L + V ++ HS ++ + FS + ++S DK V +W++
Sbjct: 152 I---KLWNTLGVCKYTVQDESHSEW------VSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 30/208 (14%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMT------RLLKQTSELMHHSDQLDQR---------L 45
+V S DG +SGS DG + +W +T R + T +++ + D R
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 46 IEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTT--FFVSSSLDATCKVWDLGSGILIQTQ 103
I++ S + S ++ VS D KVW+L + L
Sbjct: 152 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 104 V-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
+ + + + P L +G DG+ + L E +H I
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-----------EGKHLYTLDGGDIIN 260
Query: 163 ALAFSAS-HLISASEDKTVCLWDVTRRV 189
AL FS + + + A+ ++ +WD+ ++
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKI 288
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTA-----IAFHPGEQLLFAGSIDGRIFV-- 132
VS S D T +VWD+ G T V+ + I + + + GS D + V
Sbjct: 176 LVSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 133 ---------------SPLKFLLLEDH-FIVGEDQHSVLKGHNGSITALAFSASHLISASE 176
PL F E++ + VG VL+GH S+ ++ + ++S S
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVG-----VLRGHMASVRTVSGHGNIVVSGSY 288
Query: 177 DKTVCLWDVTR 187
D T+ +WDV +
Sbjct: 289 DNTLIVWDVAQ 299
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 23/191 (12%)
Query: 10 LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVTG 69
+++GS D + VW L + S + H ++ D L+ +SV
Sbjct: 220 IVTGSRDNTLHVWK----LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR- 274
Query: 70 LLTISGGTTFFVSSSLDATCKVWDLG--SGILIQTQVYPQAVTAIAFHPGEQLLFAGSID 127
T+SG VS S D T VWD+ + I + + + I H ++ + A S+D
Sbjct: 275 --TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMD 331
Query: 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV-- 185
I + L+ GE ++ L+GH + L S L+SA+ D ++ WD
Sbjct: 332 TTIRIWDLE---------NGELMYT-LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Query: 186 -TRRVSIRRFN 195
+R+ S N
Sbjct: 382 YSRKFSYHHTN 392
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 154 LKGHNGSITALAFS-ASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSL 212
L GH+G + AL ++ L+S S D+TV +WD+ + F V L ++ ++
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR 187
LKGHNG +T +A + ++SAS DKT+ +W +TR
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 47
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLD------------------ 42
+ FS D ++SGS D I +W+ + K T + HS+ +
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 43 QRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
+L+++ + +T+S + S D +WDL G + T
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 229
Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL----KGHN 158
+ A+ F P L A + +K LE IV E + V+ K
Sbjct: 230 LDGGDIINALCFSPNRYWLCAAT------GPSIKIWDLEGKIIVDELKQEVISTSSKAEP 283
Query: 159 GSITALAFSASH--LISASEDKTVCLWDVT 186
T+LA+SA L + D V +W VT
Sbjct: 284 PQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 109 VTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS 167
VT IA P ++ + S D I + + L D G Q + L+GH+ ++ + S
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIM----WKLTRDETNYGIPQRA-LRGHSHFVSDVVIS 72
Query: 168 AS--HLISASEDKTVCLWDVTRRVSIRRF-NHKKGVVT 202
+ +S S D T+ LWD+T + RRF H K V++
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS 110
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGR 129
+ IS F +S S D T ++WDL +G + V + + V ++AF + + +GS D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDV 185
I L L + V ++ HS ++ + FS + ++S DK V +W++
Sbjct: 129 I---KLWNTLGVCKYTVQDESHSEW------VSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 30/208 (14%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMT------RLLKQTSELMHHSDQLDQR---------L 45
+V S DG +SGS DG + +W +T R + T +++ + D R
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 46 IEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTT--FFVSSSLDATCKVWDLGSGILIQTQ 103
I++ S + S ++ VS D KVW+L + L
Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 104 V-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
+ + + + P L +G DG+ + L E +H I
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-----------EGKHLYTLDGGDIIN 237
Query: 163 ALAFSAS-HLISASEDKTVCLWDVTRRV 189
AL FS + + + A+ ++ +WD+ ++
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKI 265
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 154 LKGHNGSITALAFSAS---HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207
L+GH L+++ + +L+SAS+D T+CLWD+ R K + T +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 233
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 154 LKGHNGSITALAFSAS---HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207
L+GH L+++ + +L+SAS+D T+CLWD+ R K + T +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 237
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 154 LKGHNGSITALAFSAS---HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207
L+GH L+++ + +L+SAS+D T+CLWD+ R K + T +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 235
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGS-----GILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
LT S T S+S D T K+W++ + I + T++ Q + I +Q L + S
Sbjct: 245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSIS 301
Query: 126 IDGRI-FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCL 182
+G I FV+P + DQ V GHN +ITAL+ SA L SA + +
Sbjct: 302 ANGFINFVNPELGSI---------DQ--VRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 183 WDVTRRVSIRRF 194
WD++ +S R F
Sbjct: 351 WDISTGISNRVF 362
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 157 HNGSITALAFS--ASHLISASEDKTVCLWDV 185
H+GS+ L +S + + SAS DKT+ +W+V
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPL 135
F + S+D K+W+ +G L+ T + + V F LL GS D
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC------- 729
Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT-----RR 188
FL L D + ++ + + GH S+ FS L S S D T+ LWD T +
Sbjct: 730 -FLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Query: 189 VSIRRF 194
+++++F
Sbjct: 787 INVKQF 792
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 26/113 (23%)
Query: 80 FVSSSLDATCKVWDLGSGILIQT------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS 133
F + DAT +VWD+ + +Q Q+ Q V +A G + + S+DG +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--TGNGRIISLSLDGTL--- 321
Query: 134 PLKFLLLEDHFIVGEDQHSVLK---GHNGSITALAFSASHLISASEDKTVCLW 183
+ + +G D+ VLK GHN ITAL + + LIS S D + W
Sbjct: 322 --------NFYELGHDE--VLKTISGHNKGITAL--TVNPLISGSYDGRIMEW 362
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 73 ISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
++ G +S SLD T ++LG +++T + + +TA+ +P L +GS DGRI
Sbjct: 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 26/113 (23%)
Query: 80 FVSSSLDATCKVWDLGSGILIQT------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS 133
F + DAT +VWD+ + +Q Q+ Q V +A G + + S+DG +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--TGNGRIISLSLDGTL--- 321
Query: 134 PLKFLLLEDHFIVGEDQHSVLK---GHNGSITALAFSASHLISASEDKTVCLW 183
+ + +G D+ VLK GHN ITAL + + LIS S D + W
Sbjct: 322 --------NFYELGHDE--VLKTISGHNKGITAL--TVNPLISGSYDGRIXEW 362
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 73 ISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
++ G +S SLD T ++LG +++T + + +TA+ +P L +GS DGRI
Sbjct: 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
Q + +T + F P + L + S D + LK ++D G + +++ GH ++T
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQ-----LKIWSVKD----GSNPRTLI-GHRATVT 182
Query: 163 ALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNHKK----GVVTNLVVIRQSSLLSEV 216
+A +++SAS D T+ LW+ +I FN K+ GV + + + L E+
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 242
Query: 217 SNCQRK 222
S ++
Sbjct: 243 STSKKN 248
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
+++VT + I G +S+SLD T ++W+ G+G I T
Sbjct: 178 RATVTDIAIIDRGRNV-LSASLDGTIRLWECGTGTTIHT 215
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
Q + +T + F P + L + S D + LK ++D G + +++ GH ++T
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQ-----LKIWSVKD----GSNPRTLI-GHRATVT 185
Query: 163 ALAF--SASHLISASEDKTVCLWDVTRRVSIRRFNHKK----GVVTNLVVIRQSSLLSEV 216
+A +++SAS D T+ LW+ +I FN K+ GV + + + L E+
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245
Query: 217 SNCQRK 222
S ++
Sbjct: 246 STSKKN 251
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
+++VT + I G +S+SLD T ++W+ G+G I T
Sbjct: 181 RATVTDIAIIDRGRNV-LSASLDGTIRLWECGTGTTIHT 218
>pdb|4E9L|A Chain A, Fdec, A Novel Broadly Conserved Escherichia Coli Adhesin
Eliciting Protection Against Urinary Tract Infections
Length = 420
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 136 KFLLLEDHFIVGEDQHSVL---KGHNGSITALAFSASHLISASEDKTVCLW 183
K + EDH GE L H +I+ L+ SAS +ASE TV W
Sbjct: 198 KVSVAEDHVKAGESTTVTLVAKDAHGNAISGLSLSASLTGTASEGATVSSW 248
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 27/210 (12%)
Query: 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLD------------------ 42
+ FS D ++SG D + VW++ T H+D +
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 43 QRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
L+++ + VT + T+S + SS D ++WDL G +
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSV-TVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161
+ I F P + A + G RIF K +++E + E Q S K
Sbjct: 234 MAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVE---LAPEHQGS--KKIVPEC 288
Query: 162 TALAFSA--SHLISASEDKTVCLWDVTRRV 189
++A+SA S L S D + +W V+
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 109 VTAIAFHPGEQLLFAGSID--GRIFVS------------------PLKFLLLEDHFIVGE 148
V ++ +HP LL AGS D RIF + P L+ E G
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204
Query: 149 DQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208
H V NGS A S D TVCL D +++++ + + + I
Sbjct: 205 -VHGVCFSANGSRVAW---------VSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254
Query: 209 QSSLLSEVSNC 219
+SSL++ +C
Sbjct: 255 ESSLVAAGHDC 265
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 109 VTAIAFHPGEQLLFAGSID--GRIFVS------------------PLKFLLLEDHFIVGE 148
V ++ +HP LL AGS D RIF + P L+ E G
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204
Query: 149 DQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208
H V NGS A S D TVCL D +++++ + + + I
Sbjct: 205 -VHGVCFSANGSRVAW---------VSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254
Query: 209 QSSLLSEVSNC 219
+SSL++ +C
Sbjct: 255 ESSLVAAGHDC 265
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 152 SVLKGHNGSITALAFSAS---HLISASEDKTVCLWDVTRRVSIR-RFNHKKG-------- 199
S+LK H + + F S HL + SED ++ WD + V + H+ G
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSH 333
Query: 200 VVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQC 259
++N + QS + S +S KDR+ P SLS+ + +L C D
Sbjct: 334 SISNQANVHQSVISSWLST---DPAKDRIEITSLLPS-RSLSVNTLDVLGPCLVCGTDAE 389
Query: 260 SINIRR 265
+I + R
Sbjct: 390 AIYVTR 395
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 38/184 (20%)
Query: 9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVT 68
LL +GS D + +W+ +T E+ D L +IE ++ V
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEM----DLL--AIIE--------------GHENEVK 111
Query: 69 GLLTISGGTTFFVSSSLDATCKVWDLG-SGILIQT----QVYPQAVTAIAFHPGEQLLFA 123
G+ + G + + S D + +W+ SG + Q + Q V + +HP E LL +
Sbjct: 112 GVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170
Query: 124 GSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKT 179
S D + + + +D + + +VL GH G++ + F + L S S+D T
Sbjct: 171 SSYDDTVRI----WKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 180 VCLW 183
V +W
Sbjct: 223 VRVW 226
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 22 WSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFV 81
W +T L EL ++ Q++ R I++ ++ V I+ V
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVT--------------ETPVRAGKFIARKNWIIV 72
Query: 82 SSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140
S D +V++ +G ++ + +P + +IA HP + + +GS D + K
Sbjct: 73 GSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV-----KLWNW 126
Query: 141 EDHFIVGEDQHSVLKGHNGSITALAFS---ASHLISASEDKTVCLW 183
E+++ + + +GH + +AF+ S S D+TV +W
Sbjct: 127 ENNWALEQ----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
+ +++S D T K+WD + + T + + V+ FHP ++ +GS DG +
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 22 WSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFV 81
W +T L EL ++ Q++ R I++ ++ V I+ V
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVT--------------ETPVRAGKFIARKNWIIV 72
Query: 82 SSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140
S D +V++ +G ++ + +P + +IA HP + + +GS D + K
Sbjct: 73 GSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV-----KLWNW 126
Query: 141 EDHFIVGEDQHSVLKGHNGSITALAFS---ASHLISASEDKTVCLW 183
E+++ + + +GH + +AF+ S S D+TV +W
Sbjct: 127 ENNWALEQ----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
+ +++S D T K+WD + + T + + V+ FHP ++ +GS DG +
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
T G T +SSS D+ +VW+ +G + Q + + V +LL + S DG +
Sbjct: 1011 FTADGKT--LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTV 1067
Query: 131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLW 183
V + +E F H G++ + A S A+ S S DKT +W
Sbjct: 1068 KVWNVITGRIERDFTC----------HQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 73/198 (36%), Gaps = 65/198 (32%)
Query: 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELM----HHSDQLDQRLIEMXXXXXXXXXX 58
F+ DG LIS S+D +I VW+ QT + + H D RL++
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFRLLQ----------- 1054
Query: 59 XXXXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE 118
+ +S S D T KVW++ +G + + H G
Sbjct: 1055 ------------------DSRLLSWSFDGTVKVWNVITGRIERD---------FTCHQGT 1087
Query: 119 QLLFAGSIDGRIFVSP--------LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH 170
L A S D F S F LL H LKGHNG + AFS
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSP-------LHE-LKGHNGCVRCSAFSLDG 1139
Query: 171 LISASEDKT--VCLWDVT 186
++ A+ D + +W+V+
Sbjct: 1140 ILLATGDDNGEIRIWNVS 1157
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 2 VFSDDGFLLISGSDDGMICVWSMT 25
FS DG LL +G D+G I +W+++
Sbjct: 1134 AFSLDGILLATGDDNGEIRIWNVS 1157
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
T G T +SSS D+ +VW+ +G + Q + + V +LL + S DG +
Sbjct: 1018 FTADGKT--LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTV 1074
Query: 131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLW 183
V + +E F H G++ + A S A+ S S DKT +W
Sbjct: 1075 KVWNVITGRIERDFTC----------HQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 73/198 (36%), Gaps = 65/198 (32%)
Query: 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELM----HHSDQLDQRLIEMXXXXXXXXXX 58
F+ DG LIS S+D +I VW+ QT + + H D RL++
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFRLLQ----------- 1061
Query: 59 XXXXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE 118
+ +S S D T KVW++ +G + + H G
Sbjct: 1062 ------------------DSRLLSWSFDGTVKVWNVITGRIERD---------FTCHQGT 1094
Query: 119 QLLFAGSIDGRIFVSP--------LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH 170
L A S D F S F LL H LKGHNG + AFS
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSP-------LHE-LKGHNGCVRCSAFSLDG 1146
Query: 171 LISASEDKT--VCLWDVT 186
++ A+ D + +W+V+
Sbjct: 1147 ILLATGDDNGEIRIWNVS 1164
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 2 VFSDDGFLLISGSDDGMICVWSMT 25
FS DG LL +G D+G I +W+++
Sbjct: 1141 AFSLDGILLATGDDNGEIRIWNVS 1164
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA 123
T + V+ S D + K+WD+ +G + T P V + F P A
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA 132
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 70 LLTISGGTTFFVSSSLDATCK-----VWDLGSGILIQTQVYPQAVTAIAFHP 116
+ T G F+ + LD T K V+ SG ++TQ +P AV F P
Sbjct: 273 VYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPP 324
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
+ +++S D T K+WD + + T + + V+ FHP ++ +GS DG +
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 78 TFFVSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136
+ + S D +V++ +G ++ + +P + +IA HP + + +GS D + K
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV-----K 122
Query: 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFS---ASHLISASEDKTVCLW 183
E+++ + +GH + +AF+ S S D+TV +W
Sbjct: 123 LWNWENNWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 22 WSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXXXXKSSVTGLLTISGGTTFFV 81
W +T L EL ++ Q++ R I++ ++ V I+ V
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVT--------------ETPVRAGKFIARKNWIIV 72
Query: 82 SSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140
S D +V++ +G ++ + +P + +IA HP + + +GS D + K
Sbjct: 73 GSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV-----KLWNW 126
Query: 141 EDHFIVGEDQHSVLKGHNGSITALAFS---ASHLISASEDKTVCLW 183
E+++ + +GH + +AF+ S S D+TV +W
Sbjct: 127 ENNWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
+ +++S D T K+WD + + T + + V+ FHP ++ +GS DG +
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
>pdb|3TGN|A Chain A, Crystal Structure Of The Zinc-Dependent Marr Family
Transcriptional Regulator Adcr In The Zn(Ii)-Bound State
pdb|3TGN|B Chain B, Crystal Structure Of The Zinc-Dependent Marr Family
Transcriptional Regulator Adcr In The Zn(Ii)-Bound State
Length = 146
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKK 198
L + + E+QH +L GH S AL + H++ ++++ ++ RR+++ + K
Sbjct: 11 FLNEVILQAENQHEILIGHCTSEVALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTK 70
Query: 199 GV 200
+
Sbjct: 71 AI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,894,527
Number of Sequences: 62578
Number of extensions: 304828
Number of successful extensions: 1093
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 383
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)