Query 045370
Match_columns 350
No_of_seqs 482 out of 3336
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 12:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-35 4.6E-40 240.2 15.5 188 2-226 182-375 (459)
2 KOG0271 Notchless-like WD40 re 100.0 5.9E-35 1.3E-39 235.0 15.6 232 1-273 121-405 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.8E-35 1.5E-39 237.3 12.5 215 1-270 223-445 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.2E-33 2.7E-38 227.4 17.3 228 1-270 163-466 (480)
5 KOG0279 G protein beta subunit 100.0 1.8E-32 4E-37 212.0 20.1 187 1-226 69-262 (315)
6 KOG0263 Transcription initiati 100.0 1.8E-33 3.9E-38 245.6 16.3 187 1-225 457-648 (707)
7 KOG0285 Pleiotropic regulator 100.0 6.8E-32 1.5E-36 215.7 16.7 242 1-284 157-408 (460)
8 KOG0263 Transcription initiati 100.0 1.6E-31 3.5E-36 233.4 17.7 243 2-262 385-646 (707)
9 KOG0286 G-protein beta subunit 100.0 2.1E-30 4.6E-35 201.9 21.5 208 1-220 61-295 (343)
10 KOG0315 G-protein beta subunit 100.0 8.2E-30 1.8E-34 194.4 20.7 222 8-232 11-291 (311)
11 KOG0273 Beta-transducin family 100.0 1.3E-29 2.8E-34 209.3 19.9 183 1-222 241-476 (524)
12 KOG0284 Polyadenylation factor 100.0 3.8E-30 8.2E-35 208.9 11.8 182 1-220 102-286 (464)
13 KOG0279 G protein beta subunit 100.0 1.2E-28 2.6E-33 191.0 19.1 182 7-222 28-216 (315)
14 KOG0284 Polyadenylation factor 100.0 1.8E-29 3.8E-34 205.0 13.8 184 1-222 186-374 (464)
15 KOG0266 WD40 repeat-containing 100.0 9E-28 2E-32 213.8 23.1 187 1-226 165-361 (456)
16 KOG0286 G-protein beta subunit 100.0 6.8E-28 1.5E-32 188.0 18.8 182 3-220 153-337 (343)
17 KOG0316 Conserved WD40 repeat- 100.0 1.5E-27 3.3E-32 180.7 17.5 181 1-219 23-204 (307)
18 KOG0291 WD40-repeat-containing 100.0 5.1E-27 1.1E-31 204.3 21.2 182 1-221 356-543 (893)
19 KOG0295 WD40 repeat-containing 100.0 3E-27 6.5E-32 189.5 17.3 194 1-232 156-367 (406)
20 KOG1407 WD40 repeat protein [F 100.0 3.6E-27 7.8E-32 181.2 16.0 194 1-219 26-252 (313)
21 KOG0277 Peroxisomal targeting 100.0 2.8E-27 6.1E-32 181.1 15.0 183 1-219 66-256 (311)
22 KOG0646 WD40 repeat protein [G 100.0 1E-25 2.2E-30 186.2 25.1 200 1-218 129-339 (476)
23 KOG0266 WD40 repeat-containing 100.0 2.6E-26 5.7E-31 204.5 23.4 187 1-222 209-403 (456)
24 KOG0645 WD40 repeat protein [G 100.0 4.1E-26 8.9E-31 176.3 20.6 188 1-220 20-217 (312)
25 KOG0273 Beta-transducin family 99.9 3.2E-26 6.9E-31 189.4 20.6 207 1-220 282-515 (524)
26 KOG0282 mRNA splicing factor [ 99.9 1.4E-27 3.1E-32 197.9 12.7 233 1-273 220-470 (503)
27 KOG0319 WD40-repeat-containing 99.9 2.2E-26 4.8E-31 199.9 20.1 189 5-226 375-577 (775)
28 KOG0265 U5 snRNP-specific prot 99.9 1.5E-26 3.3E-31 181.1 17.2 188 1-226 53-246 (338)
29 KOG0283 WD40 repeat-containing 99.9 1.3E-26 2.9E-31 204.4 18.8 248 1-264 273-575 (712)
30 KOG0313 Microtubule binding pr 99.9 1.3E-26 2.9E-31 186.8 16.5 208 1-220 199-410 (423)
31 PTZ00421 coronin; Provisional 99.9 1E-25 2.2E-30 200.1 23.7 196 1-226 81-287 (493)
32 PLN00181 protein SPA1-RELATED; 99.9 1.2E-25 2.6E-30 214.4 25.9 187 1-223 538-733 (793)
33 KOG0295 WD40 repeat-containing 99.9 4E-26 8.7E-31 183.1 17.3 182 1-220 199-398 (406)
34 KOG0291 WD40-repeat-containing 99.9 5.2E-26 1.1E-30 198.1 19.2 226 1-267 313-552 (893)
35 KOG0265 U5 snRNP-specific prot 99.9 4.2E-26 9.2E-31 178.6 16.6 196 1-223 96-333 (338)
36 KOG0640 mRNA cleavage stimulat 99.9 1.1E-26 2.4E-31 182.8 13.0 209 2-228 119-334 (430)
37 KOG0310 Conserved WD40 repeat- 99.9 1.9E-25 4.1E-30 185.6 19.8 186 2-225 117-306 (487)
38 KOG0643 Translation initiation 99.9 5.5E-25 1.2E-29 169.8 20.7 195 1-226 16-220 (327)
39 KOG0293 WD40 repeat-containing 99.9 3E-26 6.5E-31 186.7 14.4 204 1-229 230-513 (519)
40 KOG0264 Nucleosome remodeling 99.9 9.4E-26 2E-30 185.9 17.2 200 1-229 183-404 (422)
41 KOG0318 WD40 repeat stress pro 99.9 7.8E-25 1.7E-29 183.6 22.5 215 2-226 66-348 (603)
42 KOG0319 WD40-repeat-containing 99.9 5.9E-26 1.3E-30 197.3 16.4 198 2-228 418-619 (775)
43 KOG0278 Serine/threonine kinas 99.9 3.9E-26 8.4E-31 174.6 13.3 188 1-228 106-296 (334)
44 KOG0276 Vesicle coat complex C 99.9 1.3E-25 2.7E-30 192.0 17.9 186 1-222 103-293 (794)
45 KOG0292 Vesicle coat complex C 99.9 1.7E-25 3.8E-30 198.0 18.9 199 1-228 57-279 (1202)
46 KOG0315 G-protein beta subunit 99.9 2.4E-25 5.2E-30 170.1 17.0 169 1-207 89-309 (311)
47 KOG0268 Sof1-like rRNA process 99.9 4.3E-26 9.3E-31 182.9 13.3 254 8-314 80-385 (433)
48 KOG0276 Vesicle coat complex C 99.9 5.7E-25 1.2E-29 188.0 20.2 230 1-271 19-263 (794)
49 PTZ00420 coronin; Provisional 99.9 2.5E-24 5.4E-29 192.3 24.7 169 54-233 64-252 (568)
50 KOG0281 Beta-TrCP (transducin 99.9 3E-26 6.6E-31 183.0 11.0 181 5-226 205-388 (499)
51 KOG0647 mRNA export protein (c 99.9 6.7E-25 1.5E-29 172.1 17.4 192 1-218 33-313 (347)
52 PTZ00421 coronin; Provisional 99.9 5.4E-24 1.2E-28 189.2 25.3 205 3-232 28-248 (493)
53 KOG0772 Uncharacterized conser 99.9 1.8E-25 3.9E-30 187.0 14.6 212 1-219 173-430 (641)
54 KOG0308 Conserved WD40 repeat- 99.9 4.7E-25 1E-29 189.2 17.0 211 5-226 35-283 (735)
55 PTZ00420 coronin; Provisional 99.9 5E-24 1.1E-28 190.4 24.4 191 1-220 80-285 (568)
56 KOG0645 WD40 repeat protein [G 99.9 4E-24 8.7E-29 165.3 20.5 182 1-222 67-255 (312)
57 KOG0275 Conserved WD40 repeat- 99.9 7.1E-26 1.5E-30 179.5 10.7 186 2-217 220-412 (508)
58 KOG0310 Conserved WD40 repeat- 99.9 1.2E-24 2.5E-29 181.0 18.0 183 1-220 74-260 (487)
59 PLN00181 protein SPA1-RELATED; 99.9 5.6E-24 1.2E-28 203.1 25.5 195 1-228 489-689 (793)
60 KOG0283 WD40 repeat-containing 99.9 5.8E-25 1.3E-29 194.2 17.2 196 1-228 375-575 (712)
61 KOG0264 Nucleosome remodeling 99.9 2.1E-24 4.5E-29 178.1 18.1 237 7-268 137-386 (422)
62 KOG0292 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 192.8 17.8 189 1-228 15-235 (1202)
63 cd00200 WD40 WD40 domain, foun 99.9 2E-23 4.3E-28 175.9 23.6 182 1-220 57-241 (289)
64 KOG0285 Pleiotropic regulator 99.9 1.9E-24 4E-29 173.4 16.1 182 1-222 199-383 (460)
65 KOG0318 WD40 repeat stress pro 99.9 1.7E-23 3.7E-28 175.6 22.4 195 1-223 196-555 (603)
66 KOG0289 mRNA splicing factor [ 99.9 5E-24 1.1E-28 174.8 18.4 188 1-226 267-460 (506)
67 cd00200 WD40 WD40 domain, foun 99.9 2.7E-23 5.9E-28 175.0 23.2 189 1-228 15-206 (289)
68 KOG0277 Peroxisomal targeting 99.9 1.5E-24 3.3E-29 166.2 13.8 184 2-221 111-302 (311)
69 KOG0305 Anaphase promoting com 99.9 4.6E-24 1E-28 183.5 17.6 190 1-231 223-421 (484)
70 KOG0281 Beta-TrCP (transducin 99.9 2.4E-25 5.2E-30 177.9 8.5 176 2-221 242-421 (499)
71 KOG0296 Angio-associated migra 99.9 2.3E-23 5E-28 167.4 19.9 192 1-220 112-390 (399)
72 KOG0269 WD40 repeat-containing 99.9 2E-24 4.3E-29 188.8 13.2 188 6-227 99-294 (839)
73 KOG0282 mRNA splicing factor [ 99.9 3.3E-24 7.2E-29 178.1 13.6 193 1-221 264-498 (503)
74 KOG0313 Microtubule binding pr 99.9 4.5E-23 9.8E-28 166.6 19.5 190 7-226 115-327 (423)
75 KOG0296 Angio-associated migra 99.9 6.5E-23 1.4E-27 164.8 20.1 181 1-219 70-254 (399)
76 KOG1446 Histone H3 (Lys4) meth 99.9 5.1E-22 1.1E-26 157.1 24.7 211 1-222 20-256 (311)
77 KOG1332 Vesicle coat complex C 99.9 9.1E-24 2E-28 161.1 13.8 189 6-225 22-238 (299)
78 KOG4283 Transcription-coupled 99.9 1.8E-23 4E-28 163.7 15.4 194 6-221 55-269 (397)
79 KOG0270 WD40 repeat-containing 99.9 3.2E-23 6.8E-28 170.6 17.1 210 6-232 191-407 (463)
80 KOG0306 WD40-repeat-containing 99.9 5.1E-23 1.1E-27 179.6 17.8 189 1-219 460-655 (888)
81 KOG0289 mRNA splicing factor [ 99.9 5.9E-23 1.3E-27 168.6 16.6 191 4-231 228-421 (506)
82 KOG0306 WD40-repeat-containing 99.9 3.2E-22 6.9E-27 174.7 21.7 213 1-227 379-620 (888)
83 KOG0299 U3 snoRNP-associated p 99.9 1.1E-22 2.5E-27 168.1 16.7 187 1-226 208-410 (479)
84 KOG1036 Mitotic spindle checkp 99.9 2E-22 4.3E-27 158.8 16.3 189 1-219 19-295 (323)
85 KOG0278 Serine/threonine kinas 99.9 1.1E-23 2.4E-28 161.2 8.6 178 4-219 26-205 (334)
86 KOG0267 Microtubule severing p 99.9 9.4E-24 2E-28 183.3 9.1 181 1-219 76-259 (825)
87 KOG0641 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 146.1 21.0 206 1-219 95-340 (350)
88 KOG0302 Ribosome Assembly prot 99.9 2.1E-22 4.6E-27 162.7 15.7 206 6-230 164-379 (440)
89 KOG1539 WD repeat protein [Gen 99.9 1.7E-22 3.8E-27 178.1 15.2 189 1-228 454-647 (910)
90 KOG0274 Cdc4 and related F-box 99.9 4.9E-22 1.1E-26 177.1 17.7 182 2-228 256-440 (537)
91 KOG0973 Histone transcription 99.9 9.7E-22 2.1E-26 178.3 19.6 216 1-226 75-353 (942)
92 KOG0302 Ribosome Assembly prot 99.9 3.1E-22 6.7E-27 161.7 14.4 189 1-220 217-431 (440)
93 KOG0973 Histone transcription 99.9 4.4E-22 9.5E-27 180.5 16.8 244 1-270 19-317 (942)
94 KOG0316 Conserved WD40 repeat- 99.9 1E-21 2.2E-26 149.3 15.3 180 2-219 66-291 (307)
95 KOG0274 Cdc4 and related F-box 99.9 4E-21 8.7E-26 171.3 21.2 183 7-231 218-402 (537)
96 KOG2096 WD40 repeat protein [G 99.9 4.2E-21 9.2E-26 152.1 18.0 255 1-263 92-400 (420)
97 KOG2445 Nuclear pore complex c 99.9 1.5E-20 3.2E-25 148.3 20.6 201 1-226 19-315 (361)
98 KOG0288 WD40 repeat protein Ti 99.9 9.4E-22 2E-26 160.6 14.3 182 1-223 225-412 (459)
99 KOG0300 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 154.1 15.4 217 1-229 196-428 (481)
100 KOG0269 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 173.3 14.0 187 1-223 139-335 (839)
101 KOG0267 Microtubule severing p 99.9 7E-23 1.5E-27 178.0 7.9 186 7-231 40-228 (825)
102 KOG0294 WD40 repeat-containing 99.9 2.9E-21 6.2E-26 152.7 16.0 191 5-222 51-275 (362)
103 KOG1407 WD40 repeat protein [F 99.9 1.2E-20 2.6E-25 145.6 17.9 179 1-219 112-293 (313)
104 KOG0275 Conserved WD40 repeat- 99.9 1.5E-21 3.3E-26 155.1 12.2 187 1-224 269-463 (508)
105 KOG0640 mRNA cleavage stimulat 99.9 1.2E-20 2.6E-25 149.0 16.2 180 1-216 178-370 (430)
106 KOG0268 Sof1-like rRNA process 99.9 1.4E-21 3.1E-26 157.2 11.0 202 8-220 120-337 (433)
107 KOG0270 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 155.0 17.2 185 8-228 257-448 (463)
108 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.5E-25 163.7 16.6 176 6-226 70-246 (745)
109 KOG0639 Transducin-like enhanc 99.9 1.1E-21 2.3E-26 164.2 9.6 188 2-226 426-620 (705)
110 KOG0305 Anaphase promoting com 99.9 2.4E-20 5.1E-25 160.8 17.4 185 1-226 183-373 (484)
111 KOG0643 Translation initiation 99.9 4.5E-20 9.9E-25 142.8 16.7 219 2-262 59-314 (327)
112 KOG1332 Vesicle coat complex C 99.9 1.9E-20 4.1E-25 143.1 13.6 183 6-221 69-279 (299)
113 KOG0641 WD40 repeat protein [G 99.8 4.7E-19 1E-23 134.2 19.5 203 1-222 38-297 (350)
114 KOG0772 Uncharacterized conser 99.8 4E-20 8.8E-25 155.2 14.3 191 2-225 275-484 (641)
115 KOG0639 Transducin-like enhanc 99.8 1.6E-20 3.5E-25 157.2 11.5 180 1-220 515-696 (705)
116 KOG0646 WD40 repeat protein [G 99.8 1.4E-19 3E-24 150.2 16.6 162 61-225 78-244 (476)
117 KOG1273 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 141.7 17.5 191 1-226 29-223 (405)
118 KOG1274 WD40 repeat protein [G 99.8 6.2E-19 1.3E-23 157.6 21.7 217 1-221 19-255 (933)
119 KOG0288 WD40 repeat protein Ti 99.8 8.2E-20 1.8E-24 149.4 14.2 178 5-219 271-452 (459)
120 KOG1034 Transcriptional repres 99.8 4.4E-19 9.5E-24 141.2 16.3 194 7-227 105-382 (385)
121 KOG0647 mRNA export protein (c 99.8 2.2E-19 4.8E-24 141.3 14.3 195 61-270 24-227 (347)
122 KOG0308 Conserved WD40 repeat- 99.8 9.8E-20 2.1E-24 156.9 12.6 270 4-330 127-402 (735)
123 KOG0303 Actin-binding protein 99.8 6.6E-19 1.4E-23 143.4 16.6 197 1-228 87-293 (472)
124 KOG0299 U3 snoRNP-associated p 99.8 6.2E-19 1.3E-23 146.2 16.7 188 2-219 251-446 (479)
125 KOG1036 Mitotic spindle checkp 99.8 6.4E-19 1.4E-23 139.2 15.9 198 62-276 11-212 (323)
126 KOG1408 WD40 repeat protein [F 99.8 1.1E-19 2.4E-24 158.3 12.7 189 1-223 465-708 (1080)
127 KOG1446 Histone H3 (Lys4) meth 99.8 2.3E-18 5.1E-23 136.6 19.0 183 1-223 106-300 (311)
128 KOG0301 Phospholipase A2-activ 99.8 6.6E-19 1.4E-23 152.9 16.0 166 6-220 112-280 (745)
129 KOG0307 Vesicle coat complex C 99.8 3.9E-20 8.5E-25 168.9 8.8 193 1-224 70-280 (1049)
130 KOG4378 Nuclear protein COP1 [ 99.8 4.3E-19 9.3E-24 148.6 13.5 181 7-225 91-277 (673)
131 KOG0300 WD40 repeat-containing 99.8 6.9E-19 1.5E-23 139.7 13.5 195 8-242 161-399 (481)
132 KOG2919 Guanine nucleotide-bin 99.8 9.5E-19 2.1E-23 139.1 14.1 193 1-223 164-364 (406)
133 KOG2048 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 148.1 18.4 196 1-227 75-274 (691)
134 KOG0294 WD40 repeat-containing 99.8 4.3E-18 9.3E-23 134.9 16.5 182 9-219 3-189 (362)
135 KOG0771 Prolactin regulatory e 99.8 1.8E-18 4E-23 142.1 13.9 185 1-219 150-345 (398)
136 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.3E-22 132.3 18.6 214 2-233 56-285 (406)
137 KOG0307 Vesicle coat complex C 99.8 4.2E-19 9.1E-24 162.2 10.9 186 1-221 122-320 (1049)
138 KOG4328 WD40 protein [Function 99.8 2.3E-18 5.1E-23 142.7 13.2 192 1-225 192-398 (498)
139 KOG1274 WD40 repeat protein [G 99.8 9.7E-18 2.1E-22 150.0 17.7 178 1-218 102-290 (933)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.9E-17 1.9E-21 136.9 21.7 179 1-218 36-226 (300)
141 KOG0293 WD40 repeat-containing 99.8 7E-18 1.5E-22 138.3 13.5 147 2-187 319-514 (519)
142 KOG0303 Actin-binding protein 99.8 6.6E-18 1.4E-22 137.7 13.3 170 56-236 73-256 (472)
143 KOG0649 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 124.5 16.8 194 2-226 17-235 (325)
144 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-17 3.2E-22 141.5 15.1 203 1-223 300-556 (577)
145 KOG0321 WD40 repeat-containing 99.8 1.6E-17 3.5E-22 143.1 14.6 158 1-187 106-302 (720)
146 KOG2055 WD40 repeat protein [G 99.8 3.7E-17 8.1E-22 135.8 16.1 188 1-226 219-414 (514)
147 KOG2055 WD40 repeat protein [G 99.8 3.9E-17 8.5E-22 135.7 16.0 188 2-222 310-506 (514)
148 KOG1007 WD repeat protein TSSC 99.8 4.3E-17 9.4E-22 127.9 15.2 191 1-223 129-356 (370)
149 KOG2106 Uncharacterized conser 99.7 4.6E-16 1E-20 130.8 21.3 205 5-225 297-518 (626)
150 KOG2106 Uncharacterized conser 99.7 2.1E-16 4.6E-21 132.8 18.8 179 1-223 252-472 (626)
151 KOG1408 WD40 repeat protein [F 99.7 7.8E-17 1.7E-21 140.8 15.6 186 1-220 330-571 (1080)
152 KOG0321 WD40 repeat-containing 99.7 7.3E-17 1.6E-21 139.1 15.1 196 8-225 65-298 (720)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.3E-15 2.7E-20 129.8 22.8 196 1-229 78-279 (300)
154 KOG4328 WD40 protein [Function 99.7 1.5E-16 3.2E-21 132.2 15.7 219 1-225 240-491 (498)
155 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 127.2 14.5 167 8-210 41-223 (376)
156 KOG4283 Transcription-coupled 99.7 1.4E-16 2.9E-21 125.5 12.9 161 59-230 38-220 (397)
157 KOG2048 WD40 repeat protein [G 99.7 3.2E-15 7E-20 129.9 21.2 183 1-220 31-225 (691)
158 KOG4378 Nuclear protein COP1 [ 99.7 6E-16 1.3E-20 130.0 16.0 171 2-210 128-305 (673)
159 KOG0290 Conserved WD40 repeat- 99.7 5.7E-16 1.2E-20 121.7 14.5 180 6-219 162-357 (364)
160 KOG1272 WD40-repeat-containing 99.7 2.6E-16 5.6E-21 131.1 12.6 212 1-225 135-361 (545)
161 KOG2321 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 127.1 19.6 221 1-226 57-299 (703)
162 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.2E-20 119.5 14.2 163 61-230 147-319 (364)
163 KOG1523 Actin-related protein 99.7 3.6E-15 7.7E-20 118.8 16.1 199 1-230 16-238 (361)
164 KOG1007 WD repeat protein TSSC 99.7 1.7E-15 3.7E-20 119.0 14.0 149 62-222 121-283 (370)
165 KOG1524 WD40 repeat-containing 99.7 7.6E-16 1.7E-20 130.5 12.9 194 8-248 76-272 (737)
166 KOG1445 Tumor-specific antigen 99.7 3.5E-16 7.5E-21 135.2 10.7 197 1-226 633-841 (1012)
167 KOG1524 WD40 repeat-containing 99.7 1.9E-15 4E-20 128.2 14.1 172 2-226 111-284 (737)
168 KOG1009 Chromatin assembly com 99.7 1E-15 2.2E-20 125.4 11.9 189 2-219 20-251 (434)
169 KOG0650 WD40 repeat nucleolar 99.7 5.8E-15 1.3E-19 126.8 16.4 187 1-226 406-635 (733)
170 KOG1009 Chromatin assembly com 99.7 8.8E-16 1.9E-20 125.8 10.5 158 63-220 12-187 (434)
171 KOG2096 WD40 repeat protein [G 99.6 1.2E-14 2.5E-19 115.9 15.7 167 57-225 79-257 (420)
172 KOG1538 Uncharacterized conser 99.6 2.9E-14 6.3E-19 124.2 18.8 180 1-221 18-245 (1081)
173 KOG1445 Tumor-specific antigen 99.6 2.9E-15 6.2E-20 129.6 12.2 184 3-219 587-785 (1012)
174 KOG4227 WD40 repeat protein [G 99.6 7E-15 1.5E-19 120.3 13.4 185 1-214 62-260 (609)
175 KOG1310 WD40 repeat protein [G 99.6 4.5E-14 9.7E-19 120.4 17.6 160 1-186 56-231 (758)
176 KOG0644 Uncharacterized conser 99.6 1E-15 2.2E-20 136.1 7.4 184 2-217 197-457 (1113)
177 KOG1539 WD repeat protein [Gen 99.6 1.6E-13 3.5E-18 122.3 20.7 187 6-226 123-315 (910)
178 KOG1587 Cytoplasmic dynein int 99.6 1.8E-13 3.9E-18 121.9 20.7 203 2-228 249-471 (555)
179 KOG2110 Uncharacterized conser 99.6 2.3E-13 5.1E-18 110.6 19.3 152 61-226 84-248 (391)
180 KOG1273 WD40 repeat protein [G 99.6 5.3E-14 1.2E-18 112.0 15.1 215 1-217 71-312 (405)
181 KOG2110 Uncharacterized conser 99.6 3.1E-13 6.7E-18 109.9 19.4 191 2-233 12-208 (391)
182 KOG1063 RNA polymerase II elon 99.6 6.2E-14 1.3E-18 122.4 16.1 184 9-220 27-289 (764)
183 KOG2445 Nuclear pore complex c 99.6 7.7E-14 1.7E-18 110.7 15.1 157 61-219 10-193 (361)
184 KOG2394 WD40 protein DMR-N9 [G 99.6 6.9E-14 1.5E-18 118.8 15.6 135 64-208 219-384 (636)
185 KOG1063 RNA polymerase II elon 99.6 3.2E-14 7E-19 124.2 13.9 175 1-209 531-734 (764)
186 KOG1188 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 114.6 12.4 155 7-194 84-250 (376)
187 KOG1517 Guanine nucleotide bin 99.6 1.1E-13 2.4E-18 126.3 15.8 190 6-218 1122-1324(1387)
188 COG2319 FOG: WD40 repeat [Gene 99.6 1.5E-12 3.4E-17 115.8 23.2 191 1-229 161-359 (466)
189 PRK11028 6-phosphogluconolacto 99.6 3.1E-12 6.6E-17 110.5 24.1 198 1-228 40-257 (330)
190 KOG1963 WD40 repeat protein [G 99.6 4.3E-13 9.3E-18 120.3 18.8 187 2-223 23-317 (792)
191 PRK01742 tolB translocation pr 99.6 4.4E-13 9.5E-18 119.5 19.2 177 1-221 209-394 (429)
192 KOG0642 Cell-cycle nuclear pro 99.6 4.6E-14 1E-18 120.5 12.2 169 1-198 350-573 (577)
193 KOG0650 WD40 repeat nucleolar 99.6 3.9E-14 8.4E-19 121.8 11.7 182 1-220 527-727 (733)
194 KOG1310 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 122.0 10.1 162 57-219 43-222 (758)
195 KOG2394 WD40 protein DMR-N9 [G 99.6 8.8E-14 1.9E-18 118.2 13.5 153 2-167 226-383 (636)
196 KOG0322 G-protein beta subunit 99.5 1.2E-13 2.5E-18 107.5 12.5 190 3-222 22-317 (323)
197 KOG4547 WD40 repeat-containing 99.5 5E-13 1.1E-17 115.0 17.5 201 4-226 2-217 (541)
198 PRK11028 6-phosphogluconolacto 99.5 6.3E-13 1.4E-17 114.8 18.5 198 1-228 85-303 (330)
199 KOG1517 Guanine nucleotide bin 99.5 1E-13 2.3E-18 126.5 13.7 187 2-226 1172-1378(1387)
200 KOG2139 WD40 repeat protein [G 99.5 4.2E-13 9.1E-18 108.9 15.3 186 1-225 104-308 (445)
201 KOG2111 Uncharacterized conser 99.5 1.8E-12 3.9E-17 103.5 18.7 188 1-220 11-248 (346)
202 PF08662 eIF2A: Eukaryotic tra 99.5 1.5E-12 3.2E-17 102.5 18.3 117 63-194 58-186 (194)
203 KOG0649 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 100.2 17.3 165 2-209 121-296 (325)
204 COG2319 FOG: WD40 repeat [Gene 99.5 2.6E-12 5.7E-17 114.3 21.5 186 4-228 119-313 (466)
205 KOG1538 Uncharacterized conser 99.5 1.4E-12 3E-17 114.0 17.8 207 1-222 59-287 (1081)
206 KOG0322 G-protein beta subunit 99.5 1.3E-13 2.9E-18 107.1 9.9 149 9-185 167-322 (323)
207 KOG1523 Actin-related protein 99.5 6.8E-13 1.5E-17 106.0 13.6 195 1-220 61-271 (361)
208 KOG3881 Uncharacterized conser 99.5 2.7E-12 5.8E-17 105.3 17.2 189 8-230 116-321 (412)
209 PRK04922 tolB translocation pr 99.5 4.4E-12 9.4E-17 113.3 19.9 178 1-219 209-399 (433)
210 KOG1587 Cytoplasmic dynein int 99.5 8.8E-13 1.9E-17 117.5 15.0 192 8-223 306-511 (555)
211 PRK03629 tolB translocation pr 99.5 6.6E-12 1.4E-16 111.7 20.6 178 1-220 204-395 (429)
212 PF08662 eIF2A: Eukaryotic tra 99.5 3.6E-12 7.8E-17 100.3 16.2 117 88-219 38-164 (194)
213 PRK05137 tolB translocation pr 99.5 9E-12 2E-16 111.4 20.4 178 1-219 207-397 (435)
214 KOG1034 Transcriptional repres 99.5 3.6E-12 7.8E-17 102.3 15.4 149 60-219 34-202 (385)
215 KOG2321 WD40 repeat protein [G 99.5 3E-12 6.6E-17 109.9 15.5 159 53-222 164-337 (703)
216 PRK02889 tolB translocation pr 99.5 1.2E-11 2.5E-16 110.2 19.6 181 1-220 201-392 (427)
217 KOG2139 WD40 repeat protein [G 99.4 3E-12 6.4E-17 104.1 13.3 196 64-265 98-312 (445)
218 TIGR02800 propeller_TolB tol-p 99.4 3.2E-11 6.9E-16 107.8 20.0 178 2-220 196-386 (417)
219 KOG1272 WD40-repeat-containing 99.4 6.2E-13 1.3E-17 111.2 8.2 179 2-219 216-400 (545)
220 PRK01742 tolB translocation pr 99.4 7.1E-12 1.5E-16 111.8 14.7 148 57-219 196-353 (429)
221 KOG1334 WD40 repeat protein [G 99.4 4.6E-12 9.9E-17 106.7 11.5 223 1-223 148-463 (559)
222 KOG1240 Protein kinase contain 99.4 5E-11 1.1E-15 111.0 19.1 186 4-218 1058-1261(1431)
223 KOG1240 Protein kinase contain 99.4 1.1E-11 2.3E-16 115.3 13.8 165 54-221 1038-1218(1431)
224 KOG3914 WD repeat protein WDR4 99.4 2E-11 4.3E-16 100.7 13.4 161 2-195 69-232 (390)
225 PRK05137 tolB translocation pr 99.3 3.4E-10 7.5E-15 101.3 22.1 152 55-219 192-354 (435)
226 KOG3881 Uncharacterized conser 99.3 2.7E-11 5.9E-16 99.5 13.4 174 8-209 162-342 (412)
227 KOG1963 WD40 repeat protein [G 99.3 8.2E-11 1.8E-15 106.0 17.3 194 1-218 211-418 (792)
228 KOG0644 Uncharacterized conser 99.3 1.5E-12 3.1E-17 116.4 5.1 117 57-186 183-300 (1113)
229 KOG4497 Uncharacterized conser 99.3 3.7E-11 8E-16 96.7 12.0 195 2-238 55-252 (447)
230 KOG0280 Uncharacterized conser 99.3 1.1E-10 2.5E-15 92.5 14.1 187 1-222 127-325 (339)
231 PRK02889 tolB translocation pr 99.3 3.8E-10 8.2E-15 100.6 19.4 152 58-220 189-349 (427)
232 PRK03629 tolB translocation pr 99.3 2E-10 4.2E-15 102.4 17.5 167 1-209 248-428 (429)
233 KOG0974 WD-repeat protein WDR6 99.3 3.2E-11 7E-16 110.4 11.9 144 3-187 141-289 (967)
234 PRK00178 tolB translocation pr 99.3 1.3E-09 2.7E-14 97.8 20.7 176 2-219 205-394 (430)
235 KOG0771 Prolactin regulatory e 99.3 3.2E-11 6.9E-16 100.0 9.4 146 68-223 148-306 (398)
236 PRK04792 tolB translocation pr 99.3 1.2E-09 2.7E-14 97.7 20.3 177 2-219 224-413 (448)
237 PRK04922 tolB translocation pr 99.3 1.1E-09 2.3E-14 98.1 19.7 149 58-219 197-356 (433)
238 KOG4227 WD40 repeat protein [G 99.2 2.6E-10 5.7E-15 93.9 13.5 152 58-218 50-215 (609)
239 KOG4497 Uncharacterized conser 99.2 6.6E-11 1.4E-15 95.3 8.2 177 2-218 15-198 (447)
240 TIGR02800 propeller_TolB tol-p 99.2 6.2E-09 1.3E-13 93.1 21.5 150 58-220 183-343 (417)
241 KOG0974 WD-repeat protein WDR6 99.2 1.7E-09 3.6E-14 99.5 17.8 178 5-220 97-280 (967)
242 PF02239 Cytochrom_D1: Cytochr 99.2 8E-09 1.7E-13 89.6 21.2 180 8-219 6-192 (369)
243 PRK01029 tolB translocation pr 99.1 9.3E-09 2E-13 91.4 20.1 146 64-218 230-390 (428)
244 PF10282 Lactonase: Lactonase, 99.1 3.5E-08 7.6E-13 85.5 22.6 210 1-226 92-319 (345)
245 KOG1354 Serine/threonine prote 99.1 3.8E-10 8.2E-15 91.5 9.1 211 1-225 31-300 (433)
246 KOG2111 Uncharacterized conser 99.1 9.8E-09 2.1E-13 82.6 16.0 82 56-138 173-258 (346)
247 PRK00178 tolB translocation pr 99.1 3.4E-08 7.4E-13 88.6 21.6 151 57-220 191-352 (430)
248 PRK04792 tolB translocation pr 99.1 3.7E-08 8.1E-13 88.3 20.7 150 58-220 211-371 (448)
249 PF15492 Nbas_N: Neuroblastoma 99.1 4.9E-08 1.1E-12 77.9 18.5 175 1-196 49-269 (282)
250 KOG2066 Vacuolar assembly/sort 99.0 1.4E-08 3E-13 91.3 16.6 174 7-226 49-233 (846)
251 KOG4547 WD40 repeat-containing 99.0 1E-08 2.2E-13 88.9 14.9 145 74-226 2-172 (541)
252 KOG4532 WD40-like repeat conta 99.0 1.9E-08 4.2E-13 79.1 14.8 172 7-211 84-263 (344)
253 PRK01029 tolB translocation pr 99.0 6.4E-08 1.4E-12 86.1 18.6 132 66-210 282-426 (428)
254 PF10282 Lactonase: Lactonase, 99.0 4E-07 8.7E-12 79.0 22.4 193 1-223 42-269 (345)
255 KOG1064 RAVE (regulator of V-A 98.9 3.1E-09 6.7E-14 102.9 9.0 176 4-227 2217-2399(2439)
256 PF02239 Cytochrom_D1: Cytochr 98.9 3.3E-07 7.2E-12 79.6 20.5 156 2-195 43-211 (369)
257 KOG0280 Uncharacterized conser 98.9 5.8E-09 1.3E-13 83.0 8.6 151 7-187 178-334 (339)
258 KOG4532 WD40-like repeat conta 98.9 1.7E-07 3.8E-12 73.9 16.5 146 67-218 161-322 (344)
259 COG4946 Uncharacterized protei 98.9 4.9E-07 1.1E-11 77.0 19.8 146 61-218 356-508 (668)
260 KOG1354 Serine/threonine prote 98.9 6.5E-08 1.4E-12 78.8 14.1 217 1-219 90-350 (433)
261 COG2706 3-carboxymuconate cycl 98.9 8.9E-07 1.9E-11 73.0 20.8 192 1-223 45-268 (346)
262 KOG1064 RAVE (regulator of V-A 98.9 4.5E-09 9.7E-14 101.9 8.0 144 1-195 2257-2407(2439)
263 PRK04043 tolB translocation pr 98.9 6.3E-07 1.4E-11 79.4 20.8 175 2-219 194-388 (419)
264 KOG4190 Uncharacterized conser 98.9 9.8E-09 2.1E-13 88.6 8.6 163 6-197 746-917 (1034)
265 KOG2041 WD40 repeat protein [G 98.9 5E-08 1.1E-12 86.8 12.6 123 1-136 20-145 (1189)
266 KOG4714 Nucleoporin [Nuclear s 98.8 3E-08 6.5E-13 77.7 9.5 177 6-184 100-316 (319)
267 KOG2695 WD40 repeat protein [G 98.8 2E-08 4.3E-13 81.8 8.7 137 63-207 251-401 (425)
268 COG2706 3-carboxymuconate cycl 98.8 1.9E-06 4E-11 71.1 20.1 199 1-226 94-318 (346)
269 KOG1409 Uncharacterized conser 98.8 6.3E-08 1.4E-12 78.9 11.5 83 54-137 187-271 (404)
270 KOG0309 Conserved WD40 repeat- 98.8 1.6E-08 3.5E-13 90.1 8.8 201 1-211 30-258 (1081)
271 PLN02919 haloacid dehalogenase 98.8 1.5E-06 3.3E-11 85.4 23.2 159 67-226 685-885 (1057)
272 KOG1334 WD40 repeat protein [G 98.8 1.6E-08 3.4E-13 85.9 8.1 156 56-219 134-303 (559)
273 COG5170 CDC55 Serine/threonine 98.8 2.1E-08 4.5E-13 80.6 7.9 193 1-218 32-300 (460)
274 KOG1409 Uncharacterized conser 98.8 1.6E-07 3.4E-12 76.6 12.9 189 1-223 74-265 (404)
275 KOG2315 Predicted translation 98.8 8.6E-07 1.9E-11 76.9 16.9 118 87-219 251-375 (566)
276 PLN02919 haloacid dehalogenase 98.8 1.1E-06 2.4E-11 86.4 19.9 177 1-190 688-892 (1057)
277 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.3E-05 2.8E-10 68.5 23.5 97 117-220 205-321 (352)
278 PF11768 DUF3312: Protein of u 98.7 4.1E-06 8.9E-11 73.7 20.1 111 66-188 207-331 (545)
279 COG4946 Uncharacterized protei 98.6 7.2E-06 1.6E-10 70.1 18.8 135 72-219 327-464 (668)
280 PF08450 SGL: SMP-30/Gluconola 98.6 3E-05 6.6E-10 64.0 22.2 210 2-217 6-244 (246)
281 KOG4190 Uncharacterized conser 98.6 9.9E-08 2.1E-12 82.6 7.3 156 56-219 727-897 (1034)
282 KOG2315 Predicted translation 98.6 4.2E-06 9.2E-11 72.7 16.4 135 61-211 267-413 (566)
283 KOG2695 WD40 repeat protein [G 98.6 1E-07 2.2E-12 77.8 6.3 140 81-227 228-377 (425)
284 PF00400 WD40: WD domain, G-be 98.6 1.6E-07 3.4E-12 52.9 5.2 35 150-184 3-39 (39)
285 KOG1275 PAB-dependent poly(A) 98.6 2.1E-06 4.6E-11 78.8 14.3 142 64-221 177-335 (1118)
286 COG5354 Uncharacterized protei 98.5 3.1E-05 6.8E-10 66.8 20.0 141 65-219 174-336 (561)
287 KOG4714 Nucleoporin [Nuclear s 98.5 5.4E-07 1.2E-11 70.9 8.8 72 107-187 180-255 (319)
288 KOG2114 Vacuolar assembly/sort 98.5 1.1E-05 2.5E-10 73.7 18.1 182 2-218 30-235 (933)
289 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.9E-12 51.4 5.6 37 56-93 3-39 (39)
290 KOG1275 PAB-dependent poly(A) 98.5 7.6E-07 1.6E-11 81.6 10.4 145 5-185 185-341 (1118)
291 KOG2314 Translation initiation 98.5 7.6E-06 1.6E-10 71.2 15.8 106 106-219 445-558 (698)
292 PF07433 DUF1513: Protein of u 98.5 7.2E-05 1.6E-09 61.9 20.8 188 2-225 57-282 (305)
293 PF08450 SGL: SMP-30/Gluconola 98.5 8E-05 1.7E-09 61.5 21.4 145 67-225 42-210 (246)
294 COG5170 CDC55 Serine/threonine 98.5 2.9E-06 6.3E-11 68.6 11.8 158 60-219 168-358 (460)
295 TIGR02658 TTQ_MADH_Hv methylam 98.5 7.7E-05 1.7E-09 63.8 20.5 183 1-195 110-339 (352)
296 KOG3914 WD repeat protein WDR4 98.5 1.2E-06 2.7E-11 72.9 9.4 87 55-143 142-230 (390)
297 KOG0882 Cyclophilin-related pe 98.4 1.4E-06 3.1E-11 73.7 9.0 180 7-219 20-222 (558)
298 KOG1645 RING-finger-containing 98.4 2E-05 4.4E-10 66.0 15.6 69 1-97 199-268 (463)
299 KOG0882 Cyclophilin-related pe 98.4 3.2E-06 7E-11 71.6 10.9 165 2-194 60-239 (558)
300 KOG1912 WD40 repeat protein [G 98.4 1.7E-05 3.6E-10 71.9 15.7 183 9-221 81-297 (1062)
301 PF11768 DUF3312: Protein of u 98.4 3.6E-06 7.7E-11 74.1 10.9 94 44-139 239-332 (545)
302 KOG0309 Conserved WD40 repeat- 98.4 3.8E-07 8.3E-12 81.6 4.9 160 2-187 165-340 (1081)
303 PRK04043 tolB translocation pr 98.4 0.00013 2.8E-09 64.9 20.8 140 66-219 189-339 (419)
304 TIGR03300 assembly_YfgL outer 98.4 6E-05 1.3E-09 66.5 18.2 133 78-223 242-374 (377)
305 KOG3621 WD40 repeat-containing 98.3 1.1E-05 2.4E-10 72.3 11.5 189 2-226 40-244 (726)
306 KOG2314 Translation initiation 98.3 6E-05 1.3E-09 65.8 15.2 173 1-215 216-410 (698)
307 KOG2066 Vacuolar assembly/sort 98.3 6.9E-05 1.5E-09 68.3 16.1 144 6-186 82-233 (846)
308 KOG1008 Uncharacterized conser 98.2 3.2E-07 6.9E-12 80.9 0.9 183 8-226 71-272 (783)
309 PF13360 PQQ_2: PQQ-like domai 98.2 0.00046 1E-08 56.6 19.5 185 5-223 34-225 (238)
310 KOG1832 HIV-1 Vpr-binding prot 98.2 1.1E-06 2.5E-11 80.4 3.8 176 1-217 1107-1285(1516)
311 KOG1645 RING-finger-containing 98.2 1.9E-05 4.1E-10 66.1 10.6 151 57-216 186-348 (463)
312 PF04762 IKI3: IKI3 family; I 98.2 0.00036 7.7E-09 68.0 20.5 154 62-218 73-276 (928)
313 PF13360 PQQ_2: PQQ-like domai 98.2 0.00036 7.9E-09 57.2 18.0 115 77-198 36-152 (238)
314 PF04762 IKI3: IKI3 family; I 98.2 0.0003 6.4E-09 68.5 19.6 181 1-220 215-448 (928)
315 PF15492 Nbas_N: Neuroblastoma 98.2 0.0017 3.7E-08 52.5 20.5 198 1-230 3-260 (282)
316 PF08553 VID27: VID27 cytoplas 98.1 6E-05 1.3E-09 70.6 13.4 138 76-219 492-639 (794)
317 KOG1912 WD40 repeat protein [G 98.1 5.7E-05 1.2E-09 68.6 12.3 146 67-225 18-183 (1062)
318 KOG2041 WD40 repeat protein [G 98.1 1.3E-05 2.8E-10 72.0 8.1 119 104-222 12-139 (1189)
319 PRK02888 nitrous-oxide reducta 98.1 0.00093 2E-08 60.8 19.7 140 76-218 287-451 (635)
320 PF07433 DUF1513: Protein of u 98.1 0.00049 1.1E-08 57.0 16.4 142 68-218 8-182 (305)
321 COG5354 Uncharacterized protei 98.1 0.00015 3.3E-09 62.7 13.7 137 62-219 272-420 (561)
322 KOG1832 HIV-1 Vpr-binding prot 98.0 7.1E-06 1.5E-10 75.4 4.1 154 56-226 1093-1255(1516)
323 TIGR03300 assembly_YfgL outer 98.0 0.00073 1.6E-08 59.7 16.8 113 77-195 105-217 (377)
324 PF06977 SdiA-regulated: SdiA- 98.0 0.0016 3.4E-08 53.2 17.0 185 1-215 27-238 (248)
325 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.001 2.2E-08 53.1 14.6 123 74-208 20-145 (354)
326 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.002 4.3E-08 44.7 14.4 100 67-182 2-110 (111)
327 PF08596 Lgl_C: Lethal giant l 97.9 0.008 1.7E-07 52.9 21.3 215 1-220 7-282 (395)
328 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0013 2.8E-08 45.6 12.9 95 3-131 10-109 (111)
329 KOG3621 WD40 repeat-containing 97.8 0.0002 4.3E-09 64.5 10.7 110 74-187 42-155 (726)
330 KOG2395 Protein involved in va 97.8 0.00047 1E-08 60.3 12.1 132 79-219 348-492 (644)
331 COG0823 TolB Periplasmic compo 97.8 0.00092 2E-08 59.3 14.3 138 70-219 243-390 (425)
332 COG3391 Uncharacterized conser 97.8 0.017 3.6E-07 51.0 21.7 184 2-219 80-273 (381)
333 PF04053 Coatomer_WDAD: Coatom 97.7 0.0013 2.8E-08 58.6 13.8 162 1-217 38-214 (443)
334 PRK11138 outer membrane biogen 97.7 0.0053 1.2E-07 54.5 17.7 132 78-223 257-389 (394)
335 KOG1920 IkappaB kinase complex 97.6 0.006 1.3E-07 58.8 17.1 185 2-226 75-319 (1265)
336 KOG3617 WD40 and TPR repeat-co 97.6 0.0014 3.1E-08 60.6 12.1 67 1-95 65-131 (1416)
337 KOG4640 Anaphase-promoting com 97.6 0.00032 6.9E-09 62.5 7.8 87 1-116 26-115 (665)
338 KOG4640 Anaphase-promoting com 97.5 0.00049 1.1E-08 61.4 8.4 93 105-208 19-115 (665)
339 PF00780 CNH: CNH domain; Int 97.5 0.03 6.5E-07 47.0 19.2 153 3-193 3-172 (275)
340 PF05096 Glu_cyclase_2: Glutam 97.5 0.039 8.4E-07 45.1 21.6 135 77-218 100-250 (264)
341 KOG1008 Uncharacterized conser 97.4 3.2E-05 6.9E-10 68.7 0.2 111 65-186 155-275 (783)
342 PF04841 Vps16_N: Vps16, N-ter 97.4 0.025 5.5E-07 50.3 18.4 162 54-225 70-243 (410)
343 PRK11138 outer membrane biogen 97.4 0.012 2.6E-07 52.3 16.4 118 78-195 161-283 (394)
344 COG0823 TolB Periplasmic compo 97.4 0.0054 1.2E-07 54.5 13.3 149 59-219 187-346 (425)
345 PF08553 VID27: VID27 cytoplas 97.4 0.0069 1.5E-07 57.3 14.4 122 53-185 513-646 (794)
346 PF03178 CPSF_A: CPSF A subuni 97.4 0.03 6.4E-07 48.3 17.5 111 61-186 85-202 (321)
347 KOG2114 Vacuolar assembly/sort 97.4 0.03 6.6E-07 52.3 17.8 125 64-199 125-257 (933)
348 COG3391 Uncharacterized conser 97.3 0.062 1.3E-06 47.5 19.6 142 66-219 75-227 (381)
349 COG3386 Gluconolactonase [Carb 97.3 0.096 2.1E-06 44.5 19.4 125 90-218 144-275 (307)
350 KOG3617 WD40 and TPR repeat-co 97.3 0.00051 1.1E-08 63.4 5.5 104 71-186 22-131 (1416)
351 smart00320 WD40 WD40 repeats. 97.2 0.00068 1.5E-08 36.9 4.3 33 152-184 6-40 (40)
352 smart00320 WD40 WD40 repeats. 97.2 0.0016 3.4E-08 35.3 5.8 31 104-134 10-40 (40)
353 KOG1920 IkappaB kinase complex 97.2 0.016 3.5E-07 56.0 15.2 152 64-217 68-260 (1265)
354 PF04053 Coatomer_WDAD: Coatom 97.2 0.011 2.3E-07 52.9 13.5 138 61-222 29-168 (443)
355 PF06977 SdiA-regulated: SdiA- 97.2 0.09 2E-06 43.0 17.5 161 59-220 16-192 (248)
356 cd00216 PQQ_DH Dehydrogenases 97.2 0.061 1.3E-06 49.3 18.4 138 79-221 303-461 (488)
357 PF03178 CPSF_A: CPSF A subuni 97.1 0.16 3.4E-06 43.8 20.8 137 77-225 42-199 (321)
358 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.091 2E-06 42.3 14.7 63 77-139 63-126 (354)
359 KOG2079 Vacuolar assembly/sort 96.9 0.0044 9.5E-08 59.0 8.5 110 108-226 89-203 (1206)
360 COG3386 Gluconolactonase [Carb 96.9 0.085 1.8E-06 44.8 15.3 143 71-223 31-187 (307)
361 KOG2444 WD40 repeat protein [G 96.9 0.0058 1.2E-07 48.0 7.5 105 7-137 70-178 (238)
362 PRK13616 lipoprotein LpqB; Pro 96.8 0.093 2E-06 48.9 15.9 113 88-208 431-550 (591)
363 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.055 1.2E-06 47.3 13.9 161 4-211 1-196 (353)
364 PRK02888 nitrous-oxide reducta 96.7 0.027 5.8E-07 51.7 11.5 81 57-137 313-405 (635)
365 PF00930 DPPIV_N: Dipeptidyl p 96.7 0.37 7.9E-06 42.2 20.8 209 1-218 106-347 (353)
366 PF12894 Apc4_WD40: Anaphase-p 96.7 0.008 1.7E-07 34.8 5.3 33 104-136 9-41 (47)
367 KOG2079 Vacuolar assembly/sort 96.6 0.0072 1.6E-07 57.6 7.6 93 77-179 99-198 (1206)
368 KOG2395 Protein involved in va 96.6 0.07 1.5E-06 47.3 12.6 122 53-186 365-500 (644)
369 PF08596 Lgl_C: Lethal giant l 96.5 0.053 1.2E-06 47.8 11.9 118 108-225 3-170 (395)
370 cd00216 PQQ_DH Dehydrogenases 96.5 0.33 7.3E-06 44.5 17.4 111 85-195 173-328 (488)
371 COG3490 Uncharacterized protei 96.4 0.15 3.3E-06 41.8 12.6 164 2-195 120-319 (366)
372 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.4E-07 34.3 4.5 33 158-191 11-45 (47)
373 PHA02713 hypothetical protein; 96.3 0.24 5.2E-06 46.2 15.5 133 76-220 351-523 (557)
374 PF10647 Gmad1: Lipoprotein Lp 96.2 0.56 1.2E-05 38.8 15.7 148 66-221 25-188 (253)
375 PF06433 Me-amine-dh_H: Methyl 96.2 0.67 1.5E-05 39.5 17.4 110 76-196 194-330 (342)
376 KOG4441 Proteins containing BT 96.2 0.27 5.7E-06 45.9 14.9 106 76-190 380-503 (571)
377 PF00780 CNH: CNH domain; Int 96.1 0.66 1.4E-05 38.9 16.1 139 76-219 6-157 (275)
378 PF08728 CRT10: CRT10; InterP 96.1 0.47 1E-05 44.7 15.8 103 76-185 113-245 (717)
379 PF12234 Rav1p_C: RAVE protein 96.1 0.34 7.4E-06 45.1 14.8 107 78-186 42-156 (631)
380 COG3490 Uncharacterized protei 96.1 0.3 6.5E-06 40.1 12.7 140 68-216 71-243 (366)
381 KOG2444 WD40 repeat protein [G 96.0 0.045 9.7E-07 43.2 7.4 140 80-231 33-179 (238)
382 PF04841 Vps16_N: Vps16, N-ter 95.9 1.2 2.6E-05 39.9 23.3 57 158-214 216-275 (410)
383 COG3823 Glutamine cyclotransfe 95.9 0.63 1.4E-05 36.5 13.7 129 80-216 104-247 (262)
384 KOG4499 Ca2+-binding protein R 95.8 0.39 8.5E-06 38.3 12.0 108 105-217 156-273 (310)
385 PHA02713 hypothetical protein; 95.8 0.16 3.6E-06 47.3 11.9 92 88-189 433-536 (557)
386 COG3204 Uncharacterized protei 95.7 0.7 1.5E-05 38.2 13.6 164 61-225 82-260 (316)
387 PF05694 SBP56: 56kDa selenium 95.7 1.4 2.9E-05 39.0 18.4 139 85-223 220-398 (461)
388 PF06433 Me-amine-dh_H: Methyl 95.6 1.2 2.7E-05 38.0 16.4 150 74-226 144-317 (342)
389 COG3204 Uncharacterized protei 95.6 1.1 2.3E-05 37.2 17.9 185 1-214 91-299 (316)
390 PRK13616 lipoprotein LpqB; Pro 95.6 1.6 3.4E-05 41.0 17.3 146 65-217 350-515 (591)
391 COG5167 VID27 Protein involved 95.6 0.25 5.5E-06 43.9 11.2 135 74-219 476-624 (776)
392 KOG4499 Ca2+-binding protein R 95.6 0.96 2.1E-05 36.2 13.8 93 67-169 160-264 (310)
393 KOG3630 Nuclear pore complex, 95.5 0.11 2.4E-06 50.4 9.4 100 64-170 155-255 (1405)
394 PF14761 HPS3_N: Hermansky-Pud 95.4 1.1 2.3E-05 35.5 15.6 149 8-185 29-213 (215)
395 PF02897 Peptidase_S9_N: Proly 95.3 2.1 4.6E-05 38.3 17.8 109 70-188 129-262 (414)
396 PF15390 DUF4613: Domain of un 95.2 0.74 1.6E-05 41.9 13.1 148 63-219 18-176 (671)
397 PF07569 Hira: TUP1-like enhan 95.2 0.16 3.6E-06 40.8 8.5 61 75-136 20-95 (219)
398 PF10168 Nup88: Nuclear pore c 95.0 1 2.2E-05 43.1 14.5 79 108-187 86-180 (717)
399 PHA03098 kelch-like protein; P 95.0 1.6 3.5E-05 40.7 15.7 63 76-139 342-417 (534)
400 KOG4441 Proteins containing BT 94.9 1.6 3.5E-05 40.8 15.2 63 76-139 332-407 (571)
401 PF07569 Hira: TUP1-like enhan 94.8 0.2 4.3E-06 40.4 8.0 77 105-187 11-96 (219)
402 KOG3630 Nuclear pore complex, 94.7 0.74 1.6E-05 45.1 12.4 125 83-218 120-263 (1405)
403 KOG1916 Nuclear protein, conta 94.6 0.019 4.1E-07 54.0 1.9 154 60-226 128-320 (1283)
404 KOG2247 WD40 repeat-containing 94.5 0.0057 1.2E-07 53.4 -1.4 142 63-216 33-177 (615)
405 PF14727 PHTB1_N: PTHB1 N-term 94.5 3.4 7.3E-05 36.9 16.2 140 76-218 36-194 (418)
406 PF15390 DUF4613: Domain of un 94.4 1.6 3.4E-05 39.9 13.0 117 61-186 53-186 (671)
407 KOG1916 Nuclear protein, conta 94.3 0.065 1.4E-06 50.6 4.6 73 114-191 243-328 (1283)
408 TIGR02604 Piru_Ver_Nterm putat 94.1 3.8 8.2E-05 36.1 15.9 149 65-219 14-204 (367)
409 PF10313 DUF2415: Uncharacteri 94.1 0.27 5.8E-06 27.6 5.1 33 65-97 1-35 (43)
410 PF10647 Gmad1: Lipoprotein Lp 94.1 2.9 6.3E-05 34.6 19.3 103 66-170 67-177 (253)
411 KOG2377 Uncharacterized conser 94.0 2.3 4.9E-05 37.6 12.8 127 85-218 41-173 (657)
412 PF12234 Rav1p_C: RAVE protein 93.9 2.9 6.3E-05 39.2 14.2 103 109-220 32-150 (631)
413 PHA02790 Kelch-like protein; P 93.7 2.7 5.8E-05 38.6 13.8 59 76-138 362-425 (480)
414 PF14781 BBS2_N: Ciliary BBSom 93.6 2 4.3E-05 31.2 11.1 113 2-136 5-125 (136)
415 PLN00033 photosystem II stabil 93.6 5 0.00011 35.7 15.8 112 103-223 277-394 (398)
416 PF14870 PSII_BNR: Photosynthe 93.6 4.1 9E-05 34.6 20.2 151 63-223 143-299 (302)
417 PF10313 DUF2415: Uncharacteri 93.5 0.31 6.6E-06 27.4 4.6 31 107-137 1-34 (43)
418 PF14870 PSII_BNR: Photosynthe 93.5 4.2 9E-05 34.6 15.5 143 3-183 152-301 (302)
419 TIGR02604 Piru_Ver_Nterm putat 93.4 5.1 0.00011 35.3 15.2 59 64-125 71-142 (367)
420 PF10168 Nup88: Nuclear pore c 93.3 6.4 0.00014 38.0 15.9 89 1-97 90-181 (717)
421 KOG2247 WD40 repeat-containing 93.3 0.0088 1.9E-07 52.3 -2.5 144 2-184 41-186 (615)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 92.9 1.5 3.2E-05 39.0 10.3 97 1-116 7-118 (415)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.7 2.3 5E-05 39.5 11.9 110 78-195 70-198 (527)
424 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.7 8.5 0.00018 35.8 19.7 42 171-212 475-517 (527)
425 PHA02790 Kelch-like protein; P 92.6 8.2 0.00018 35.5 15.8 62 76-138 318-386 (480)
426 PHA03098 kelch-like protein; P 92.6 4.4 9.6E-05 37.8 13.8 63 76-139 389-467 (534)
427 KOG1900 Nuclear pore complex, 92.2 4.3 9.3E-05 40.8 13.2 79 106-187 178-273 (1311)
428 PF14761 HPS3_N: Hermansky-Pud 92.1 5.1 0.00011 31.8 11.4 111 78-189 29-166 (215)
429 TIGR02276 beta_rpt_yvtn 40-res 91.7 1.2 2.6E-05 24.6 5.8 38 77-114 4-41 (42)
430 KOG1897 Damage-specific DNA bi 91.5 5 0.00011 39.1 12.4 120 88-218 751-888 (1096)
431 PF08728 CRT10: CRT10; InterP 91.3 2.1 4.5E-05 40.6 9.7 123 6-136 113-246 (717)
432 TIGR03118 PEPCTERM_chp_1 conse 90.9 8.9 0.00019 32.3 20.2 118 1-138 28-172 (336)
433 TIGR03074 PQQ_membr_DH membran 90.7 7.3 0.00016 37.9 13.1 118 78-195 195-353 (764)
434 COG5167 VID27 Protein involved 90.5 7.3 0.00016 35.2 11.8 121 54-186 500-632 (776)
435 PRK13684 Ycf48-like protein; P 90.5 11 0.00024 32.7 14.8 110 64-184 214-329 (334)
436 PF11715 Nup160: Nucleoporin N 90.1 0.9 2E-05 42.4 6.7 28 76-103 229-256 (547)
437 PF12657 TFIIIC_delta: Transcr 89.7 3.5 7.5E-05 31.8 8.6 28 160-187 87-122 (173)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 89.6 3.9 8.4E-05 36.4 9.6 26 1-26 313-338 (415)
439 PF11635 Med16: Mediator compl 89.3 21 0.00045 35.0 15.1 76 106-181 259-345 (753)
440 TIGR03074 PQQ_membr_DH membran 88.8 11 0.00025 36.6 12.9 67 78-144 261-352 (764)
441 KOG4460 Nuclear pore complex, 88.7 10 0.00022 34.5 11.3 72 65-137 104-199 (741)
442 PF07995 GSDH: Glucose / Sorbo 88.6 10 0.00023 32.8 11.6 107 108-219 3-134 (331)
443 PF14583 Pectate_lyase22: Olig 88.2 17 0.00038 31.9 17.9 52 70-122 86-140 (386)
444 PF14781 BBS2_N: Ciliary BBSom 87.4 9.2 0.0002 27.9 13.2 105 78-194 11-133 (136)
445 KOG3616 Selective LIM binding 87.2 1.6 3.5E-05 41.0 5.9 98 104-213 12-112 (1636)
446 PRK13684 Ycf48-like protein; P 87.2 19 0.00041 31.3 18.4 148 64-223 172-326 (334)
447 PF12657 TFIIIC_delta: Transcr 87.1 8.1 0.00018 29.8 9.1 32 65-96 86-122 (173)
448 KOG1897 Damage-specific DNA bi 86.8 34 0.00074 33.8 16.6 113 63-186 828-942 (1096)
449 PF14727 PHTB1_N: PTHB1 N-term 86.4 24 0.00052 31.6 24.5 61 77-137 145-205 (418)
450 COG5276 Uncharacterized conser 86.4 18 0.0004 30.3 16.9 142 65-219 87-234 (370)
451 PF05096 Glu_cyclase_2: Glutam 86.3 18 0.00039 30.0 15.7 116 67-195 47-166 (264)
452 PF12768 Rax2: Cortical protei 86.1 19 0.00042 30.3 11.8 118 86-209 15-147 (281)
453 KOG2280 Vacuolar assembly/sort 86.0 33 0.00071 32.8 14.2 42 54-97 73-114 (829)
454 TIGR03547 muta_rot_YjhT mutatr 85.6 23 0.00051 30.8 17.2 39 87-126 168-209 (346)
455 TIGR02276 beta_rpt_yvtn 40-res 85.6 4.3 9.4E-05 22.3 5.3 35 171-206 7-41 (42)
456 KOG2377 Uncharacterized conser 85.5 27 0.00058 31.3 13.0 102 57-170 59-165 (657)
457 PF11715 Nup160: Nucleoporin N 85.1 4.3 9.4E-05 38.0 7.9 79 116-194 156-256 (547)
458 PF13449 Phytase-like: Esteras 84.8 25 0.00055 30.4 15.6 58 67-126 87-166 (326)
459 KOG4659 Uncharacterized conser 84.7 48 0.001 34.1 14.3 30 196-225 659-688 (1899)
460 PF03022 MRJP: Major royal jel 84.4 24 0.00052 29.9 18.7 152 64-216 60-253 (287)
461 TIGR03548 mutarot_permut cycli 84.4 26 0.00056 30.2 16.9 64 76-139 123-197 (323)
462 PF02897 Peptidase_S9_N: Proly 84.0 31 0.00068 30.9 23.5 140 67-214 229-386 (414)
463 PF05935 Arylsulfotrans: Aryls 83.5 37 0.00079 31.3 16.3 119 75-197 157-312 (477)
464 PF07995 GSDH: Glucose / Sorbo 83.4 13 0.00028 32.2 9.6 24 1-25 7-30 (331)
465 PF14583 Pectate_lyase22: Olig 83.3 31 0.00068 30.4 17.3 119 89-218 170-302 (386)
466 PF14779 BBS1: Ciliary BBSome 83.0 13 0.00027 30.7 8.6 71 63-133 175-255 (257)
467 COG4257 Vgb Streptogramin lyas 82.4 27 0.00059 29.1 15.8 93 106-219 147-253 (353)
468 COG1520 FOG: WD40-like repeat 81.1 37 0.00081 29.9 11.8 107 79-195 70-180 (370)
469 PF12768 Rax2: Cortical protei 81.0 23 0.0005 29.8 9.8 78 61-139 33-126 (281)
470 PF03088 Str_synth: Strictosid 80.4 9.1 0.0002 25.7 5.9 45 81-125 31-75 (89)
471 PRK14131 N-acetylneuraminic ac 80.4 41 0.00089 29.8 15.3 38 88-126 190-230 (376)
472 smart00564 PQQ beta-propeller 79.5 4.8 0.0001 20.7 3.6 24 171-194 9-32 (33)
473 PF10214 Rrn6: RNA polymerase 78.6 59 0.0013 32.0 13.1 112 65-187 146-277 (765)
474 PF10395 Utp8: Utp8 family; I 78.2 65 0.0014 30.8 13.3 170 1-195 135-314 (670)
475 PF01011 PQQ: PQQ enzyme repea 77.8 5.5 0.00012 21.6 3.6 26 171-196 3-28 (38)
476 PF13449 Phytase-like: Esteras 77.3 47 0.001 28.7 16.9 151 63-215 18-231 (326)
477 PF08801 Nucleoporin_N: Nup133 77.0 56 0.0012 29.4 12.6 29 159-187 190-220 (422)
478 PLN02193 nitrile-specifier pro 76.9 61 0.0013 29.8 15.1 64 76-140 278-355 (470)
479 PF10214 Rrn6: RNA polymerase 76.6 82 0.0018 31.1 15.2 122 1-137 151-277 (765)
480 TIGR03606 non_repeat_PQQ dehyd 75.2 66 0.0014 29.3 12.4 25 1-25 35-59 (454)
481 TIGR03606 non_repeat_PQQ dehyd 75.2 66 0.0014 29.3 12.9 60 107-169 30-89 (454)
482 PF03088 Str_synth: Strictosid 75.1 7.3 0.00016 26.2 4.2 55 171-226 30-85 (89)
483 PLN00033 photosystem II stabil 74.8 63 0.0014 28.9 16.3 108 64-183 280-396 (398)
484 PLN02153 epithiospecifier prot 74.7 57 0.0012 28.3 15.1 26 76-101 137-173 (341)
485 PF12341 DUF3639: Protein of u 74.6 9 0.0002 19.1 3.8 25 159-183 2-26 (27)
486 PF01011 PQQ: PQQ enzyme repea 74.4 12 0.00025 20.3 4.6 28 80-107 3-30 (38)
487 PF02333 Phytase: Phytase; In 73.1 67 0.0014 28.4 18.0 124 66-194 157-299 (381)
488 PF02333 Phytase: Phytase; In 73.0 67 0.0015 28.4 14.9 144 76-226 67-235 (381)
489 PRK10115 protease 2; Provision 70.9 1.1E+02 0.0023 29.9 22.9 183 1-221 132-337 (686)
490 TIGR03032 conserved hypothetic 69.8 71 0.0015 27.4 9.7 47 77-125 213-259 (335)
491 PF13570 PQQ_3: PQQ-like domai 69.6 16 0.00035 19.9 5.3 20 117-136 20-39 (40)
492 COG1520 FOG: WD40-like repeat 67.8 86 0.0019 27.6 15.8 110 76-194 111-225 (370)
493 KOG3522 Predicted guanine nucl 67.7 17 0.00038 35.0 6.3 108 64-187 581-698 (925)
494 COG5308 NUP170 Nuclear pore co 67.5 36 0.00077 33.4 8.2 80 107-188 182-277 (1263)
495 COG4590 ABC-type uncharacteriz 67.3 71 0.0015 28.8 9.4 62 77-139 328-389 (733)
496 COG3823 Glutamine cyclotransfe 66.7 65 0.0014 25.8 8.2 102 76-188 55-160 (262)
497 KOG3522 Predicted guanine nucl 66.7 14 0.0003 35.6 5.4 134 79-220 549-690 (925)
498 smart00036 CNH Domain found in 66.2 84 0.0018 26.9 12.8 61 78-139 14-76 (302)
499 PF05694 SBP56: 56kDa selenium 66.1 1E+02 0.0022 27.8 17.1 143 76-226 140-339 (461)
500 PF07250 Glyoxal_oxid_N: Glyox 65.6 76 0.0016 26.1 12.0 118 75-196 76-207 (243)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=240.23 Aligned_cols=188 Identities=22% Similarity=0.264 Sum_probs=171.5
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFF 80 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l 80 (350)
.||+|+..|||||.+|.++||+.. ....+..+.+|...|.++.|+|. ++..+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~---------------------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVP---------------------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecC---------------------------CcceeEEEeccccceeeEEEccCCCccce
Confidence 689999999999999999999998 46788899999999999999997 46689
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+||+.||++++|++.+..++..+ .|...|..++|+|+|++|.+++.|.+-++||+++. .......||..
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~ 304 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----------SELLLQEGHSK 304 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc----------hhhHhhccccc
Confidence 99999999999999998888775 48889999999999999999999999999999953 34446789999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD 226 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~ 226 (350)
.|.+++|+|+| +++|+.|..-+|||+++|+++..+.+|..+|.+|+|+|+|..|++|++|. ++|++.
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 99999999999 88999999999999999999999999999999999999999999888874 566554
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-35 Score=234.96 Aligned_cols=232 Identities=22% Similarity=0.275 Sum_probs=190.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|+|.+|+||+.|.++++||+. +..+..+..+|...|.|++|+| ++..|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~---------------------------TeTp~~t~KgH~~WVlcvawsP-Dgk~i 172 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLD---------------------------TETPLFTCKGHKNWVLCVAWSP-DGKKI 172 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccC---------------------------CCCcceeecCCccEEEEEEECC-Ccchh
Confidence 4799999999999999999999999 5788889999999999999966 88999
Q ss_pred EEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 81 VSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
++|+.||+|++||..+|+.+-. -.|...|++++|.| ..++|++++.||.|+|||+. ....+..
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~----------~~~~~~~ 242 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK----------LGTCVRT 242 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc----------CceEEEE
Confidence 9999999999999999987765 45999999999987 56799999999999999998 4555668
Q ss_pred eeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE-----------ccCCe---------
Q 045370 154 LKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-----------RQSSL--------- 212 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~~--------- 212 (350)
+.+|+.+|+|+.|-.++ +++|+.|++|++|+...|.++..+.+|...|..++.+ |.++.
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 89999999999999888 9999999999999999999999999999999998876 33444
Q ss_pred ----------------EEeeecCccccccc---------cCCccccCCCCccccccceEEeeccccCCCCcccccccccc
Q 045370 213 ----------------LSEVSNCQRKLKKD---------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTK 267 (350)
Q Consensus 213 ----------------l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 267 (350)
|++|+.|..++-+. .+......+....++++++.+....| |..+.+|.-.+|
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF---DkSVkLW~g~tG 399 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF---DKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec---ccceeeeeCCCc
Confidence 77666664433222 12223345566677777776664442 566777777777
Q ss_pred hhhHhh
Q 045370 268 SLFQHM 273 (350)
Q Consensus 268 ~~~~~~ 273 (350)
.|+...
T Consensus 400 k~lasf 405 (480)
T KOG0271|consen 400 KFLASF 405 (480)
T ss_pred chhhhh
Confidence 766544
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-35 Score=237.26 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=183.1
Q ss_pred CeecCC--CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 1 MVFSDD--GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~d--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
+.|+|. +..||||+.||++++|+++ ...++..+.+|...|..++|+| +|.
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~---------------------------~e~~l~~l~gH~~RVs~VafHP-sG~ 274 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLS---------------------------QETPLQDLEGHLARVSRVAFHP-SGK 274 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccC---------------------------CCcchhhhhcchhhheeeeecC-CCc
Confidence 478997 5689999999999999999 4678888999999999999966 789
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+|+|++.|.+-++||+.++..+.. -+|...|.+++|+|||..+++|+.|..-+|||+++ ...+..+.+|
T Consensus 275 ~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt----------gr~im~L~gH 344 (459)
T KOG0272|consen 275 FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT----------GRCIMFLAGH 344 (459)
T ss_pred eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc----------CcEEEEeccc
Confidence 999999999999999999876655 46999999999999999999999999999999994 5566689999
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeeecCc--cccccccCCccc
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVSNCQ--RKLKKDRMPSLE 232 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~~--~~~~~~~~~~~~ 232 (350)
..+|.+++|+|+| ++||+.|++++|||++..+.++++.+|.+-|+.|.|+| .|.+|++++.|. ++|....+.+
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-- 422 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-- 422 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc--
Confidence 9999999999999 99999999999999999999999999999999999999 577888777663 3443323322
Q ss_pred cCCCCccccccceEEeeccccCCCCcccccccccchhh
Q 045370 233 KYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLF 270 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (350)
+....||.+.++++..++++.++
T Consensus 423 ---------------~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 423 ---------------LKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred ---------------chhhcCCccceEEEEeccCCceE
Confidence 33345666677777766666544
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=227.41 Aligned_cols=228 Identities=25% Similarity=0.265 Sum_probs=182.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee----CC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS----GG 76 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~ 76 (350)
|+|||||+.||+|+.||.|++||..+ .......+.+|...|++++|-| +.
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpkt--------------------------g~~~g~~l~gH~K~It~Lawep~hl~p~ 216 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKT--------------------------GQQIGRALRGHKKWITALAWEPLHLVPP 216 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCC--------------------------CCcccccccCcccceeEEeecccccCCC
Confidence 58999999999999999999999874 2445567899999999999976 34
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc------------
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH------------ 143 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------ 143 (350)
..+|++++.||.|+|||+..++++..+ .|..+|+|++|-- ..+|++|+.|++|++|+...+.+...
T Consensus 217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred ccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 568999999999999999999988875 6999999999953 45999999999999999866431100
Q ss_pred -----------------------------------------------------c----ccccccceeeeccCCceEEEEe
Q 045370 144 -----------------------------------------------------F----IVGEDQHSVLKGHNGSITALAF 166 (350)
Q Consensus 144 -----------------------------------------------------~----~~~~~~~~~~~~~~~~i~~~~~ 166 (350)
+ ....+++....+|..-|+.+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 0 0011244467889999999999
Q ss_pred cCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccccCCCCccccccc
Q 045370 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEM 244 (350)
Q Consensus 167 ~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (350)
+|++ +++++.|..|++||.++|+.+.+|.+|.++|..++|+.|.++|++++.|. .+++|++..
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-TLKvw~V~t-------------- 440 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-TLKVWDVRT-------------- 440 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc-eEEEEEeee--------------
Confidence 9999 99999999999999999999999999999999999999999999777663 334443322
Q ss_pred eEEeeccccCCCCcccccccccchhh
Q 045370 245 VILLQSCFFNKDDQCSINIRRTKSLF 270 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (350)
+.+.....||.|.+..+.++++|...
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCcee
Confidence 22334445677777777777776643
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-32 Score=212.02 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=161.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++.++||++.++++.|+++++||+. .+...+.+.+|...|.++++++ +...+
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~---------------------------~g~~t~~f~GH~~dVlsva~s~-dn~qi 120 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLA---------------------------TGESTRRFVGHTKDVLSVAFST-DNRQI 120 (315)
T ss_pred eEEccCCceEEeccccceEEEEEec---------------------------CCcEEEEEEecCCceEEEEecC-CCcee
Confidence 4678999999999999999999999 5677888999999999999976 66789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
++|+.|++|++|++..+........ .+.|.|++|+|+ ..+|++++.|++|++||+++.+.. ..+.+
T Consensus 121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----------~~~~g 190 (315)
T KOG0279|consen 121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----------TTFIG 190 (315)
T ss_pred ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----------hcccc
Confidence 9999999999999885544433333 678999999997 679999999999999999965443 37789
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC-ccccccc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC-QRKLKKD 226 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~-~~~~~~~ 226 (350)
|.+.++.++++||| .++|+.||.+.+||++.++.++.+. |...|.+++|+|+.-.|+.+... .++|...
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence 99999999999999 8999999999999999999999887 78899999999999888766554 5566554
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-33 Score=245.62 Aligned_cols=187 Identities=24% Similarity=0.388 Sum_probs=172.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
..|+|+.++|+++|.|++||+|.+. +...+..+.+|..+|+++.|+| .|.+|
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~---------------------------t~s~~V~y~GH~~PVwdV~F~P-~GyYF 508 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLD---------------------------TWSCLVIYKGHLAPVWDVQFAP-RGYYF 508 (707)
T ss_pred eeecccccceeeccCCcceeeeecc---------------------------cceeEEEecCCCcceeeEEecC-CceEE
Confidence 3699999999999999999999999 5778888899999999999975 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
||++.|++-++|......+++.+ .|-..|.|+.|||+.+|+++|+.|.+|++||+. ++..++.+.||.+
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~----------~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS----------TGNSVRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC----------CCcEEEEecCCCC
Confidence 99999999999999998888874 588999999999999999999999999999999 4556779999999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--ccccc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKK 225 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~ 225 (350)
+|.+++|+|+| |++|+.||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++++.|. ++|.+
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 99999999999 99999999999999999999999999999999999999999999887763 44433
No 7
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.8e-32 Score=215.68 Aligned_cols=242 Identities=21% Similarity=0.294 Sum_probs=198.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|++.|.+.+|+||+.|++|+|||+. ++.+..++.+|...|..+++++ ...++
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDla---------------------------tg~LkltltGhi~~vr~vavS~-rHpYl 208 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLA---------------------------TGQLKLTLTGHIETVRGVAVSK-RHPYL 208 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcc---------------------------cCeEEEeecchhheeeeeeecc-cCceE
Confidence 5788999999999999999999999 6888889999999999999966 56789
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++++.|+.|+.||+..++.++. .+|-..|.|++.+|.-..|++|+.|..+++||++ ....+..+.+|..
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR----------tr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR----------TRASVHVLSGHTN 278 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec----------ccceEEEecCCCC
Confidence 9999999999999999998887 5799999999999999999999999999999999 4566779999999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc-cccccccCCcccc---
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ-RKLKKDRMPSLEK--- 233 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~--- 233 (350)
+|..+.+.|.. +++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.|. +.|.+....-+..
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence 99999999866 99999999999999999999999999999999999999999999888774 4444432111111
Q ss_pred ---CCCCccccccceEEeeccccCCCCcccccccccchhhHhhhhhhccCCHHH
Q 045370 234 ---YPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAA 284 (350)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 284 (350)
++...+...++. + +.|...|.+.+|.+.++..++......++|+...
T Consensus 359 h~~iintl~~nsD~v-~---~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s 408 (460)
T KOG0285|consen 359 HNAIINTLSVNSDGV-L---VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES 408 (460)
T ss_pred ccceeeeeeeccCce-E---EEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence 111111112221 1 1344566778888888888887777777777543
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.6e-31 Score=233.43 Aligned_cols=243 Identities=23% Similarity=0.265 Sum_probs=187.5
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCcccc----ccccccc---cccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLL----KQTSELM---HHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS 74 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 74 (350)
.||+|+..||.|-.|-.|++|.+.... +...... ..+.... ..............+.+|.++|.++.|+|
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~---~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD---VDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchh---hhhccccCCceeEEeecCCCceeeeeecc
Confidence 689999999999999999999998421 0000000 0011111 22222223445566899999999999976
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 75 GGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
+.++|++++.|++|++|.+.+..++..+ +|..||..+.|+|.|.+|++++.|++-++|... ...+.+.
T Consensus 462 -d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d----------~~~PlRi 530 (707)
T KOG0263|consen 462 -DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD----------HNKPLRI 530 (707)
T ss_pred -cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------cCCchhh
Confidence 7789999999999999999999888775 588999999999999999999999999999988 4667779
Q ss_pred eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370 154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL 231 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (350)
+.+|-+.|.|+.|+|+. +++||.|.+||+||..+|..++.|.+|.++|.+|+|||+|++|++|+.++. +.+|++..-
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~ 609 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANG 609 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCC
Confidence 99999999999999998 999999999999999999999999999999999999999999997777654 344544332
Q ss_pred ---------ccCCCCccccccceEEeeccccCCCCccccc
Q 045370 232 ---------EKYPQLNSLSMEMVILLQSCFFNKDDQCSIN 262 (350)
Q Consensus 232 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 262 (350)
...+.+.+++.++..++ .++.+..+.+|
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~vLa---sgg~DnsV~lW 646 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGNVLA---SGGADNSVRLW 646 (707)
T ss_pred cchhhhhcccCceeEEEEecCCCEEE---ecCCCCeEEEE
Confidence 22333444455554444 33344555555
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=2.1e-30 Score=201.90 Aligned_cols=208 Identities=18% Similarity=0.257 Sum_probs=170.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc----------------cc--cccccEEEeecc---ccccceee
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH----------------SD--QLDQRLIEMELR---SLRSLLHY 59 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~---~~~~~~~~ 59 (350)
|.|++|.++|+++|.||.+.|||.-+..+..-...+. .+ .....++.+..+ ......+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 5799999999999999999999987644432211111 01 123355555433 12245567
Q ss_pred eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCc
Q 045370 60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 137 (350)
+.+|++.+.|+.|.. + ..|+|++.|.++.+||+++++.+..+ .|.+.|.++.+.| +++.+++|+.|+..++||++.
T Consensus 141 l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred ecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 899999999999965 4 45899999999999999999998886 5999999999999 999999999999999999994
Q ss_pred cccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeE
Q 045370 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l 213 (350)
...+..|.+|...|+++.|.|+| +++|+.|++.++||+|..+.+..+.. -..+|++++||..|++|
T Consensus 219 ----------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 219 ----------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred ----------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 45556999999999999999999 99999999999999999988888863 24589999999999999
Q ss_pred EeeecCc
Q 045370 214 SEVSNCQ 220 (350)
Q Consensus 214 ~~~~~~~ 220 (350)
++|..|.
T Consensus 289 fagy~d~ 295 (343)
T KOG0286|consen 289 FAGYDDF 295 (343)
T ss_pred EeeecCC
Confidence 9775553
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=194.39 Aligned_cols=222 Identities=19% Similarity=0.187 Sum_probs=177.9
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccc-----------------cccccccEEEeeccccccceeeeccccCCceEE
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHH-----------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGL 70 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 70 (350)
-+|+|+|.|.+|++|...++.+.....-.. .....-++++++..+. .++..+.+|+..|..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np-~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP-NPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC-CceeEEeccCCceEEE
Confidence 489999999999999998765433222111 1122335566554443 3788999999999999
Q ss_pred EEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-------
Q 045370 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH------- 143 (350)
Q Consensus 71 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------- 143 (350)
.|. .++.+++||++||+++|||++...+.+.+.+..+|+++..+|+...|++|..+|.|++||+....+...
T Consensus 90 gF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 985 488999999999999999999988888899999999999999999999999999999999987531110
Q ss_pred --------------------------------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-
Q 045370 144 --------------------------------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR- 188 (350)
Q Consensus 144 --------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~- 188 (350)
......++..++.|.+.+..+.+||++ |++++.|.+++||+..+.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 111223555788999999999999999 999999999999999987
Q ss_pred eEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccc
Q 045370 189 VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLE 232 (350)
Q Consensus 189 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 232 (350)
+.-..+.+|...+..++||.+|+||++++.| ...++|+++.-.
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd-~~~rlW~~~~~k 291 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSD-HTARLWDLSAGK 291 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCC-CceeecccccCc
Confidence 5566778899999999999999999988888 666666665433
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-29 Score=209.32 Aligned_cols=183 Identities=27% Similarity=0.363 Sum_probs=162.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+.+|.+||+|+.||.++||+.. +.++..+..|.++|.++.|+. .+.++
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk-~G~yi 291 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNK-KGTYI 291 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcC-CCCEE
Confidence 5899999999999999999999987 778888999999999999965 67899
Q ss_pred EEEeCCCcEEEEeCCCCceEEE------------------------------------------EecCCceeEEEEcCCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT------------------------------------------QVYPQAVTAIAFHPGE 118 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~ 118 (350)
++++.|+++.+||..++...+. ..|.++|.++.|+|.+
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred EeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 9999999999999865532211 2356789999999999
Q ss_pred cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----------EEEEeCCCcEEEEECCC
Q 045370 119 QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----------LISASEDKTVCLWDVTR 187 (350)
Q Consensus 119 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------l~s~~~dg~v~iwd~~~ 187 (350)
.+|++++.|+++++|.... ......+.+|...|+.+.|+|.+ +++++.|++|++||+..
T Consensus 372 ~LLaS~SdD~TlkiWs~~~----------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQ----------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred ceEEEecCCCeeEeeecCC----------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 9999999999999999873 44445788999999999999875 89999999999999999
Q ss_pred ceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 188 RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 188 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+.+++.+..|..+|.+|+|+|+|+++++|+-++.+
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 99999999999999999999999999988877544
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=208.89 Aligned_cols=182 Identities=21% Similarity=0.333 Sum_probs=161.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|.|+|+.|++|+..|.+.+|+.. ........++|..+|.++.|++ ++.++
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHDs~Vr~m~ws~-~g~wm 153 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHDSPVRTMKWSH-NGTWM 153 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhcccceeEEEcc-CCCEE
Confidence 5799999999999999999999876 2333345689999999999976 77899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.+|.|++|+..-..+.....|. ..|++++|+|+...|++++.||.|+|||... .+..+.+.+|.-
T Consensus 154 iSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~----------~kee~vL~GHgw 223 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM----------PKEERVLRGHGW 223 (464)
T ss_pred EEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC----------CchhheeccCCC
Confidence 99999999999999876665555544 8999999999999999999999999999984 344447789999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.|.+++|+|.. +++|+.|..|++||.++++++.++.+|...|..+.|+|++.+|+++|.|.
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 99999999987 99999999999999999999999999999999999999999999998873
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=191.01 Aligned_cols=182 Identities=24% Similarity=0.297 Sum_probs=157.5
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
-..+++++.|.++.+|++... ....+.+.+.+.+|...|..++.++ ++++.++++.|
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d----------------------d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD 84 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD----------------------DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWD 84 (315)
T ss_pred CceEEEcccceEEEEEEeccC----------------------ccccCceeeeeeccceEecceEEcc-CCceEEecccc
Confidence 468999999999999999731 1224667888999999999998855 88999999999
Q ss_pred CcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec--cCCceEE
Q 045370 87 ATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG--HNGSITA 163 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 163 (350)
+++++||+.+++..+.+ .|...|.+++|++|.+.|++|+.|.+|++|+.... +..+... +.+.|+|
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHREWVSC 153 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----------EEEEEecCCCcCcEEE
Confidence 99999999998877764 69999999999999999999999999999998732 1112222 3789999
Q ss_pred EEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 164 LAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 164 ~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+.|+|+. |++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.++..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~ 216 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA 216 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE
Confidence 9999984 9999999999999999999999999999999999999999999988877644
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=205.02 Aligned_cols=184 Identities=23% Similarity=0.310 Sum_probs=164.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|||+...|+|++.||+|+|||.. .......+.+|.-.|.++.|+| ...++
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~---------------------------~~kee~vL~GHgwdVksvdWHP-~kgLi 237 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFR---------------------------MPKEERVLRGHGWDVKSVDWHP-TKGLI 237 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEecc---------------------------CCchhheeccCCCCcceeccCC-cccee
Confidence 6899999999999999999999998 4555667799999999999977 55689
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++||.|..|++||.++++++.++ .|+..|..+.|+|++++|++++.|..++++|+++ .+.+..+.+|..
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~----------mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT----------MKELFTYRGHKK 307 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH----------hHHHHHhhcchh
Confidence 99999999999999999999884 6999999999999999999999999999999993 445558889999
Q ss_pred ceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccc
Q 045370 160 SITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
.++++.|+|-. |.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|.+|++|+.|..+
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence 99999999976 9999999999999998777777664 799999999999999999987776433
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9e-28 Score=213.83 Aligned_cols=187 Identities=31% Similarity=0.448 Sum_probs=160.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc--ceeeeccccCCceEEEEeeCCCc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS--LLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
+.|+++|++|++++.|+.+++|+... .. ....+.+|...|.+++|++ ++.
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~---------------------------~~~~~~~~l~~h~~~v~~~~fs~-d~~ 216 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEG---------------------------IKSNLLRELSGHTRGVSDVAFSP-DGS 216 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeeccc---------------------------ccchhhccccccccceeeeEECC-CCc
Confidence 47999999999999999999999962 22 4555589999999999966 778
Q ss_pred EEEEEeCCCcEEEEeC-CCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 79 FFVSSSLDATCKVWDL-GSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
++++++.|++|++||+ ..+..+..+ .|...|++++|+|+++++++|+.|+.|++||+++ .+....+.+
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----------~~~~~~l~~ 286 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----------GECVRKLKG 286 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----------CeEEEeeec
Confidence 9999999999999999 455777775 6999999999999999999999999999999994 455568999
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCce--EEEEeccCCCc--eeEEEEEccCCeEEeeecCccccccc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRV--SIRRFNHKKGV--VTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
|...|++++|++++ |++++.|+.|+|||+.++. ++..+..+..+ +++++|+|++.++++++.+ +.+.+|
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-~~~~~w 361 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-RTLKLW 361 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC-CeEEEE
Confidence 99999999999999 9999999999999999999 56777655554 9999999999999966655 344444
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=6.8e-28 Score=188.01 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=161.4
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS 82 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 82 (350)
|-+ ...|+|+|.|.+..+||++ .+.....+.+|.+.|.++.+.|.+++.+++
T Consensus 153 f~d-D~~ilT~SGD~TCalWDie---------------------------~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 153 FLD-DNHILTGSGDMTCALWDIE---------------------------TGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred EcC-CCceEecCCCceEEEEEcc---------------------------cceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 444 5578999999999999999 678888899999999999997778899999
Q ss_pred EeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370 83 SSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161 (350)
Q Consensus 83 ~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (350)
|+.|++.++||++.+.+.+.+ .|...|++++|.|+|.-|++|+.|++.++||++....... ..-..-..+|
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--------ys~~~~~~gi 276 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--------YSHDSIICGI 276 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------eccCcccCCc
Confidence 999999999999999999986 5999999999999999999999999999999996432211 1222334689
Q ss_pred EEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 162 ~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
++++|+..| |++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||.-+++|+.|.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 999999999 88889999999999999999999999999999999999999999999873
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=180.67 Aligned_cols=181 Identities=15% Similarity=0.227 Sum_probs=162.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+-||+|.++++.|.+|++|+.. .+.++.++.+|...|..++... ++..|
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~---------------------------rg~liktYsghG~EVlD~~~s~-Dnskf 74 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPL---------------------------RGALIKTYSGHGHEVLDAALSS-DNSKF 74 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeeccc---------------------------ccceeeeecCCCceeeeccccc-ccccc
Confidence 4688999999999999999999988 5788999999999999998866 55679
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|..|.+||+.+|+..+.+. |.+.|+.+.|+.+...+++|+.|..+++||.++. ..+++..+.....
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--------s~ePiQildea~D 146 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--------SFEPIQILDEAKD 146 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC--------CCCccchhhhhcC
Confidence 999999999999999999999875 8999999999999999999999999999999975 4556667778889
Q ss_pred ceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 160 SITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.|.++..+...+++|+.||+++.||++.|+....+.+ .||++++|+++++..++++-+
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeecc
Confidence 9999999988899999999999999999998877664 589999999999998877665
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.1e-27 Score=204.35 Aligned_cols=182 Identities=29% Similarity=0.443 Sum_probs=159.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+++||||+++|||+.||.|+|||.. .+.++.++..|+..|+.+.|.. .++.+
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~---------------------------SgfC~vTFteHts~Vt~v~f~~-~g~~l 407 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQ---------------------------SGFCFVTFTEHTSGVTAVQFTA-RGNVL 407 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEecc---------------------------CceEEEEeccCCCceEEEEEEe-cCCEE
Confidence 5799999999999999999999998 6889999999999999999966 67889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEccCC-eEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
++.+-||+|+.||+......+++..+.+ ..|++.+|.|..+++|+.|. .|++|++.+++.. ..+.||
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll----------DiLsGH 477 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL----------DILSGH 477 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee----------ehhcCC
Confidence 9999999999999999999888765554 67888999999999999884 7999999966544 388999
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
.++|.+++|+|.+ |++++.|.+|++||+-.. ..+.++. +...+..++|.|+|+-|+++.-++.
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence 9999999999999 999999999999998754 3455555 6678999999999999998877743
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-27 Score=189.51 Aligned_cols=194 Identities=18% Similarity=0.265 Sum_probs=169.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|+..|++|++++.|-.+++||.++ ...+.....+|...|.++.|.|. +.++
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~--------------------------~~~c~ks~~gh~h~vS~V~f~P~-gd~i 208 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDT--------------------------FFRCIKSLIGHEHGVSSVFFLPL-GDHI 208 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHH--------------------------HHHHHHHhcCcccceeeEEEEec-CCee
Confidence 57899999999999999999999983 24566777899999999999884 6899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++++.|.+|+.|++.+|-++..+. |+..|..++.+.||..+++++.|.++++|-+.+.. ....+..|.-
T Consensus 209 lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----------~k~~lR~hEh 278 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----------CKAELREHEH 278 (406)
T ss_pred eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----------hhhhhhcccc
Confidence 999999999999999999999864 88899999999999999999999999999988543 3337778999
Q ss_pred ceEEEEecCC--------------e---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 160 SITALAFSAS--------------H---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 160 ~i~~~~~~~~--------------~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+|-|++|.|. + +.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||++ ..|++.
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S-caDDkt 357 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS-CADDKT 357 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE-EecCCc
Confidence 9999998653 1 889999999999999999999999999999999999999999995 456666
Q ss_pred cccccCCccc
Q 045370 223 LKKDRMPSLE 232 (350)
Q Consensus 223 ~~~~~~~~~~ 232 (350)
+++|++....
T Consensus 358 lrvwdl~~~~ 367 (406)
T KOG0295|consen 358 LRVWDLKNLQ 367 (406)
T ss_pred EEEEEeccce
Confidence 7777665544
No 20
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=181.21 Aligned_cols=194 Identities=22% Similarity=0.280 Sum_probs=168.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|+.+|..|++|+.|+++.+|+++.. ....-....+|.+.|-.++|.+.....|
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~-------------------------r~~~~~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERD-------------------------RFRKELVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecch-------------------------hhhhhhcccCCCcchhhheeCCCCCcce
Confidence 589999999999999999999999831 1112234578999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH----------------- 143 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------- 143 (350)
++++.|.+|++||++.+++.........-.-+.|+|+|.++++++.|..|.+.|.++.+....
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 999999999999999999999988777777899999999999999999999999887542111
Q ss_pred --------------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370 144 --------------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 144 --------------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 207 (350)
.-...+++..++.|+..+.||.|+|+| ||+|+.|..+.+||+...-+++.+..+.-||..+.|+
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 011345667889999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCCeEEeeecC
Q 045370 208 RQSSLLSEVSNC 219 (350)
Q Consensus 208 ~~~~~l~~~~~~ 219 (350)
.+|++||++|.|
T Consensus 241 ~dg~~lASaSED 252 (313)
T KOG1407|consen 241 HDGRMLASASED 252 (313)
T ss_pred cCcceeeccCcc
Confidence 999999998887
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=181.15 Aligned_cols=183 Identities=23% Similarity=0.284 Sum_probs=157.4
Q ss_pred CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|+++. +.+++++.||++++||+.. ...++..++.|...|.++.|+...+..
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~ 119 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRI 119 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCC--------------------------CCcchhHHHhhhhheEEecccccccee
Confidence 5788865 6888999999999999762 355788899999999999999988888
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+++++.|++|++|+..-++.+.++ +|...|....|+| .++.+++++.||.+++||++. .++.+ .+..|
T Consensus 120 ~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~gk~~-~i~ah 189 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------PGKFM-SIEAH 189 (311)
T ss_pred EEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------CCcee-EEEec
Confidence 999999999999999988888886 4888999999999 678999999999999999984 22222 48889
Q ss_pred CCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCC-eEEeeecC
Q 045370 158 NGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNC 219 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~ 219 (350)
...|.|+.|+.-. ++||+.|+.|+.||+++ ..++..+.+|.-+|..+.|||... +|++++.|
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence 9999999998654 99999999999999998 457888899999999999999864 66666655
No 22
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=186.23 Aligned_cols=200 Identities=35% Similarity=0.541 Sum_probs=168.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~ 79 (350)
|.|+-||.+|+|||.||.|.+|++. .++..+......+...+..|+-+|+++...+. -...
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~------------------~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLT------------------DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR 190 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEE------------------eecccccCCCccceeeeccCcceeEEEEecCCCccce
Confidence 4699999999999999999999987 34444444456788889999999999977653 2367
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc------cccccccccee
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED------HFIVGEDQHSV 153 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~ 153 (350)
++|+|.|.++++||+..|.++..+..+..+.+++.+|.++.+++|+.+|.|.+.++....... ........+..
T Consensus 191 l~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 191 LYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred EEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 999999999999999999999999999999999999999999999999999999887654221 12234455667
Q ss_pred eeccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 154 LKGHNG--SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 154 ~~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
+.+|.+ .|+|++++-|+ |++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+-.+.+..
T Consensus 271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~ 339 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEH 339 (476)
T ss_pred eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccc
Confidence 889988 99999999999 999999999999999999999999867899999999887655554433
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=204.46 Aligned_cols=187 Identities=28% Similarity=0.416 Sum_probs=159.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|||.++++|+.|++|+|||+.. ....+..+.+|...|++++|++.+ +++
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~--------------------------~~~~~~~l~gH~~~v~~~~f~p~g-~~i 261 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKD--------------------------DGRNLKTLKGHSTYVTSVAFSPDG-NLL 261 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccC--------------------------CCeEEEEecCCCCceEEEEecCCC-CEE
Confidence 58999999999999999999999941 357788899999999999998755 999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|++|++||++++++...+. |.+.|.+++|++++++|++++.|+.|++||+.++... ....+.++..
T Consensus 262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--------~~~~~~~~~~ 333 (456)
T KOG0266|consen 262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--------CLKLLSGAEN 333 (456)
T ss_pred EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--------eeecccCCCC
Confidence 999999999999999999998865 8899999999999999999999999999999976521 1224444444
Q ss_pred --ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCc---eeEEEEEccCCeEEeeecCccc
Q 045370 160 --SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGV---VTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 160 --~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+++++.|+|++ +++++.|+.+++||++.+..+..+.+|... +.+...++.+.++++++.+..+
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 59999999999 999999999999999999999999888764 4445567789999977776533
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=176.29 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=156.3
Q ss_pred CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccce-eeeccccCCceEEEEeeCCCc
Q 045370 1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLL-HYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~ 78 (350)
++|+|- |..|||||.|+.|++|+...+ ..-.+. ..-.+|+..|.+++|+| .++
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~------------------------~s~~ck~vld~~hkrsVRsvAwsp-~g~ 74 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSG------------------------DSWTCKTVLDDGHKRSVRSVAWSP-HGR 74 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCC------------------------CcEEEEEeccccchheeeeeeecC-CCc
Confidence 578998 889999999999999998710 001111 11257999999999966 678
Q ss_pred EEEEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 79 FFVSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
+|++++.|.++.||.-..+. ++..+ +|...|.|++|+++|++|++++.|..|.+|.+.... .-+....++
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-------Efec~aVL~ 147 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQ 147 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-------cEEEEeeec
Confidence 99999999999999877554 44444 599999999999999999999999999999988432 233445788
Q ss_pred ccCCceEEEEecCCe--EEEEeCCCcEEEEECC---CceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 156 GHNGSITALAFSASH--LISASEDKTVCLWDVT---RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.|...|..+.|+|.. |++++.|.+|++|+-. ...++.++.+|.+.|.+++|+|.|..|++++.|.
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 999999999999966 9999999999999766 4678999999999999999999999999777764
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=3.2e-26 Score=189.38 Aligned_cols=207 Identities=18% Similarity=0.268 Sum_probs=169.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccc---------------cccccEEEeeccccccceeeeccccC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD---------------QLDQRLIEMELRSLRSLLHYSLEHKS 65 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~h~~ 65 (350)
|.|+.+|+||++++.||++.+||..++........+... ..++.+..+... ...+..++.+|.+
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g 360 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHG 360 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccC
Confidence 468999999999999999999999764433322222222 122333333332 3566778889999
Q ss_pred CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCC---------cEEEEEccCCeEEEEeC
Q 045370 66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGE---------QLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~ 135 (350)
+|.++.|++ .+.+|++++.|+++++|.+........+ .|...|..+.|+|.| ..+++++.|++|++||+
T Consensus 361 ~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 361 EVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 999999976 6789999999999999999888877764 588899999999854 47899999999999999
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 213 (350)
. ...++..+..|+.+|++++|+|++ +++|+.||.|++|+.++++.++.+.+ .+.|..|+|+.+|.+|
T Consensus 440 ~----------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 440 E----------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKL 508 (524)
T ss_pred c----------CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEE
Confidence 9 455666888999999999999999 99999999999999999999999985 5679999999999998
Q ss_pred EeeecCc
Q 045370 214 SEVSNCQ 220 (350)
Q Consensus 214 ~~~~~~~ 220 (350)
..+..++
T Consensus 509 ~~~~sd~ 515 (524)
T KOG0273|consen 509 GACASDG 515 (524)
T ss_pred EEEecCC
Confidence 8666554
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=197.93 Aligned_cols=233 Identities=21% Similarity=0.307 Sum_probs=187.4
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
+.|.| .+.+|++|+.|+.|+||++.. .+.+++++.+|..+|.+++|+. .+..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~~s~-~g~~ 272 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDASFNN-CGTS 272 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhhccc-cCCe
Confidence 34667 788999999999999999983 4788999999999999999966 6677
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
|++++.|+.|++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++. +..+..|-
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----------vqeYd~hL 342 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----------VQEYDRHL 342 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------HHHHHhhh
Confidence 999999999999999999999999999999999999988 8899999999999999996553 33667788
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccccCCc-----
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS----- 230 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~----- 230 (350)
+.|..+.|-+++ +++++.|++++||+.+.+..+..+. .+.....++..+|++.++++-+-+..+.......+
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 999999999999 9999999999999999887766553 23345677888888888887776655443332111
Q ss_pred --------cccCCCCccccccceEEeeccccCCCCcccccccccchhhHhh
Q 045370 231 --------LEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHM 273 (350)
Q Consensus 231 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (350)
...+.....+++++.+++ .|+.+|.+.+|.+.+...+...
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~---SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLC---SGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEE---eecCCccEEEeechhhhhhhcc
Confidence 123444556777777777 6667788777777666555443
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=199.90 Aligned_cols=189 Identities=26% Similarity=0.386 Sum_probs=160.1
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
.+|-+|+|||.|.++++|.+++ ......++....+|+..|.+++++.....+|+++|
T Consensus 375 ~~g~llat~sKD~svilWr~~~-----------------------~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNN-----------------------NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred ccCcEEEEecCCceEEEEEecC-----------------------CcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 4677999999999999998842 11134456667899999999999877779999999
Q ss_pred CCCcEEEEeCCCCce----EEE------EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 85 LDATCKVWDLGSGIL----IQT------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~----~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
.|+++++|++...+. ... ..|...|++++++|+..+|++||.|.+.++|++... .....+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----------~l~~vL 501 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----------RLLGVL 501 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------eEEEEe
Confidence 999999999986211 111 238889999999999999999999999999999943 333489
Q ss_pred eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370 155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD 226 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~ 226 (350)
.+|...|.|+.|+|.. ++|+|.|++|+||.+.+..+++++.+|...|..+.|-.+++.|++++.++ ++|.+.
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 9999999999999986 99999999999999999999999999999999999999999999887775 444443
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=181.11 Aligned_cols=188 Identities=21% Similarity=0.291 Sum_probs=155.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+|+|.+||||+.|..|.+|++.. .......+.+|.+.|..+.|.+ +++.+
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------------------dceN~~~lkgHsgAVM~l~~~~-d~s~i 105 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYG--------------------------DCENFWVLKGHSGAVMELHGMR-DGSHI 105 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccc--------------------------cccceeeeccccceeEeeeecc-CCCEE
Confidence 47999999999999999999999762 2344566779999999999976 77889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
++++.|.+|+.||+++|+..+.+. |..-++++.-+.-| .++.+++.||++++||++...... .+ ...
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----------t~-~~k 174 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----------TF-ENK 174 (338)
T ss_pred EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----------cc-ccc
Confidence 999999999999999999998865 77778888754444 467788999999999999543322 11 224
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccc
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKD 226 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~ 226 (350)
-.++++.|...+ +.+|+-|+.|++||++.+..++.+.+|..+|+.+..+|+|.++.+-+=+ .++|.+.
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 578999999877 9999999999999999999999999999999999999999999865544 3444444
No 29
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=204.45 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=173.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcccccccccc--------------------ccc---------cc---cccccEEEe
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSEL--------------------MHH---------SD---QLDQRLIEM 48 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~~~---------~~---~~~~~~~~~ 48 (350)
|.||+||+|||+||.||.|+||.+.......... ... .. ......+..
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 5799999999999999999999987511100000 000 00 000000000
Q ss_pred -eccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEcc
Q 045370 49 -ELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSI 126 (350)
Q Consensus 49 -~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 126 (350)
...-...++..+.+|.+.|.++.|+. ..+|++++.|.+|++|++....++..+.|.+-|+||+|+| |.++|++|+-
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred ccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence 11112456678899999999999964 4689999999999999999999999999999999999999 8899999999
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--C-----
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--K----- 197 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~----- 197 (350)
||.|++|++...+.. .+..-..-|++++|.|+| .+.|+.+|.+++|+....+....... |
T Consensus 431 D~KvRiWsI~d~~Vv-----------~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVV-----------DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred ccceEEeecCcCeeE-----------eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 999999999854433 333334789999999999 89999999999999998877665532 1
Q ss_pred -CCceeEEEEEccCC-eEEeeecC--ccccccccCCccc--------cCCCCccccccceEEeeccccCCCCccccccc
Q 045370 198 -KGVVTNLVVIRQSS-LLSEVSNC--QRKLKKDRMPSLE--------KYPQLNSLSMEMVILLQSCFFNKDDQCSINIR 264 (350)
Q Consensus 198 -~~~v~~l~~~~~~~-~l~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 264 (350)
...|+++.|.|... .++++++| .+++...+..... .-....+++.++..++.. ..|..+.+|-.
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~---seDs~VYiW~~ 575 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA---SEDSWVYIWKN 575 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe---ecCceEEEEeC
Confidence 22799999998754 34446665 4555542111111 112334455566666633 35666666654
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-26 Score=186.78 Aligned_cols=208 Identities=25% Similarity=0.297 Sum_probs=165.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+..++|..+++|+.|.+|+||+.++......+ ..+......-........+.++..+.+|.++|.++.|.+ ...+
T Consensus 199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E--~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE--SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred EEecCCCCeEEeecccceeeecccCCCcccccc--ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 345789999999999999999994421111100 000000001111112234667888999999999999966 4679
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++++.|.+|+.||+.++.....+.....+.++.++|..++|++|+.|..+++||.+++. ..-....+.+|.+.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-------gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-------GSVVSQSLIGHKNW 347 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-------CceeEEeeecchhh
Confidence 99999999999999999999999999999999999999999999999999999999763 22233478899999
Q ss_pred eEEEEecCCe---EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 161 ITALAFSASH---LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
|.++.|+|.. |++|+.|+++++||+|+.+ +++.+.+|...|.++.|+. +.++++|+.|.
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~ 410 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN 410 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence 9999999987 9999999999999999877 9999999999999999974 45677677764
No 31
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1e-25 Score=200.13 Aligned_cols=196 Identities=15% Similarity=0.224 Sum_probs=150.6
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+| ++++|++|+.||+|++||+...... ......+..+.+|...|.+++|+|....+
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence 57999 8899999999999999999731100 00123456778999999999998866679
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
|++|+.|++|++||+.+++.+..+. |...|.+++|+|++.+|++++.|+.|++||++++ ..+..+.+|.
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----------~~v~tl~~H~ 210 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----------TIVSSVEAHA 210 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----------cEEEEEecCC
Confidence 9999999999999999998877765 8889999999999999999999999999999954 3334666776
Q ss_pred Cc-eEEEEecCCe--EEEEe----CCCcEEEEECCCce-EEEEeccC-CCceeEEEEEccCCeEEeeecCccccccc
Q 045370 159 GS-ITALAFSASH--LISAS----EDKTVCLWDVTRRV-SIRRFNHK-KGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 159 ~~-i~~~~~~~~~--l~s~~----~dg~v~iwd~~~~~-~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
+. +..+.|.+++ +++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++..+..+++|
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 54 4467788876 55543 47899999998754 44433323 34566677899999998887544444444
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.2e-25 Score=214.42 Aligned_cols=187 Identities=21% Similarity=0.324 Sum_probs=160.9
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+| ++.+|++++.||+|++||+. ....+..+.+|.+.|++++|++.++.+
T Consensus 538 l~~~~~~~~~las~~~Dg~v~lWd~~---------------------------~~~~~~~~~~H~~~V~~l~~~p~~~~~ 590 (793)
T PLN00181 538 ICWNSYIKSQVASSNFEGVVQVWDVA---------------------------RSQLVTEMKEHEKRVWSIDYSSADPTL 590 (793)
T ss_pred EEeccCCCCEEEEEeCCCeEEEEECC---------------------------CCeEEEEecCCCCCEEEEEEcCCCCCE
Confidence 35666 47899999999999999998 456667778999999999998878889
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEc-CCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFH-PGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
|++|+.|++|++||+.++..+..+.+...+.++.|+ +++.+|++|+.||.|++||++... .....+.+|.
T Consensus 591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---------~~~~~~~~h~ 661 (793)
T PLN00181 591 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---------LPLCTMIGHS 661 (793)
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---------ccceEecCCC
Confidence 999999999999999999988888777889999995 478999999999999999998532 2334667899
Q ss_pred CceEEEEecCCe-EEEEeCCCcEEEEECCC------ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 159 GSITALAFSASH-LISASEDKTVCLWDVTR------RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
..|.++.|.+.. +++++.|+.|++||++. ..++..+.+|...+..++|+|++.+|++|+.|+.+.
T Consensus 662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEE
Confidence 999999998655 99999999999999974 357888889999999999999999999888776443
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4e-26 Score=183.11 Aligned_cols=182 Identities=24% Similarity=0.267 Sum_probs=164.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|-|.|.++++++.|.+|+.|++. ++.++..+.+|...|..+... .++.++
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~---------------------------tg~cv~t~~~h~ewvr~v~v~-~DGti~ 250 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECD---------------------------TGYCVKTFPGHSEWVRMVRVN-QDGTII 250 (406)
T ss_pred EEEEecCCeeeecccccceeEEecc---------------------------cceeEEeccCchHhEEEEEec-CCeeEE
Confidence 4678999999999999999999999 688999999999999999874 488999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCC---------------CcEEEEEccCCeEEEEeCCcccccccc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPG---------------EQLLFAGSIDGRIFVSPLKFLLLEDHF 144 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 144 (350)
++|+.|.+|++|-+.++++...+ .|..+|.|++|.|. +.++.+++.|++|++||+.+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t------- 323 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST------- 323 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-------
Confidence 99999999999999999887775 48889999999762 24899999999999999995
Q ss_pred ccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 145 IVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
...+.++.+|...|..++|+|.| |+++..|+++++||++++++.+.+..|..-+++++|+.+..++++|+-+.
T Consensus 324 ---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 324 ---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred ---CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence 45556899999999999999999 99999999999999999999999999999999999999999999887663
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.2e-26 Score=198.10 Aligned_cols=226 Identities=19% Similarity=0.233 Sum_probs=178.1
Q ss_pred CeecCCCCEEEEEeCC-CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDD-GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+..|.+||.|+.. |.+-||++. ....+...++|...+.+++++| ++.+
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWq---------------------------sEsYVlKQQgH~~~i~~l~YSp-Dgq~ 364 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQ---------------------------SESYVLKQQGHSDRITSLAYSP-DGQL 364 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEee---------------------------ccceeeeccccccceeeEEECC-CCcE
Confidence 4678889999988864 899999999 5667778899999999999965 8899
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc-
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH- 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~- 157 (350)
++||+.||.|+|||..++-|..++. |...|+.+.|+..|+.+++.+-||+|+.||+.... ..+++...
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr----------NfRTft~P~ 434 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR----------NFRTFTSPE 434 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc----------eeeeecCCC
Confidence 9999999999999999999999975 89999999999999999999999999999998433 33344332
Q ss_pred CCceEEEEecCCe--EEEEeCCC-cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccccCCcc-
Q 045370 158 NGSITALAFSASH--LISASEDK-TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKDRMPSL- 231 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~~~~~~- 231 (350)
+....|++..|.| +.+|+.|. .|.+|++.+|+.+..+.+|.+||.+++|+|.+..|+++|.| .++|.+..-...
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 3456789999999 44555554 69999999999999999999999999999999999999988 456665532111
Q ss_pred -----ccCCCCccccccceEEeeccccCCCCcccccccccc
Q 045370 232 -----EKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTK 267 (350)
Q Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 267 (350)
..-....++.+++..++... -+|.+.++....+
T Consensus 515 Etl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~ 552 (893)
T KOG0291|consen 515 ETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEA 552 (893)
T ss_pred eeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhc
Confidence 12233445666666665433 2566555544443
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=4.2e-26 Score=178.64 Aligned_cols=196 Identities=21% Similarity=0.263 Sum_probs=152.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|.+|++.++++|.|.+|+.||++ ++...+...+|..-|+.+.-...+..++
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~---------------------------tG~~~rk~k~h~~~vNs~~p~rrg~~lv 148 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAE---------------------------TGKRIRKHKGHTSFVNSLDPSRRGPQLV 148 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecc---------------------------cceeeehhccccceeeecCccccCCeEE
Confidence 4689999999999999999999999 6888889999999999998555556788
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH----------------- 143 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------- 143 (350)
.+|+.|+++++||+++...++++..+.+++++.|...+..+++|+-|+.|++||++.......
T Consensus 149 ~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 149 CSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred EecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence 999999999999999999999998899999999999999999999999999999975431110
Q ss_pred -------------------cccccccceeeeccC----CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370 144 -------------------FIVGEDQHSVLKGHN----GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK 198 (350)
Q Consensus 144 -------------------~~~~~~~~~~~~~~~----~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 198 (350)
+......+..+.+|. ......+|+|++ +.+|+.|..+++||......+..+.+|.
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~ 308 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY 308 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence 001111122233321 122334566665 5566667777777777777778888888
Q ss_pred CceeEEEEEccCCeEEeeecCcccc
Q 045370 199 GVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 199 ~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
+.|.+++|+|...+|.+++.|.+++
T Consensus 309 gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 309 GSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eeEEEeeecCCCcEEEEeccCceeE
Confidence 8999999999999888888776554
No 36
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=182.81 Aligned_cols=209 Identities=22% Similarity=0.325 Sum_probs=163.9
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+|||||.++|||+.|..|+|.|++....... ...+..-+.......++++..|.++|+++.|+| ...+|+
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~---------~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILi 188 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSK---------PKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILI 188 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcc---------hhhhccCCcccCCceEeehhhccCcccceeecc-hhheEE
Confidence 6999999999999999999999984221110 001111111122467889999999999999977 568999
Q ss_pred EEeCCCcEEEEeCCCCceEE---EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 82 SSSLDATCKVWDLGSGILIQ---TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
+|+.|++|+++|+......+ .+....+|.++.|+|.|.++++|..-..+++||+.+..+..... --.+|.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-------Pd~qht 261 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-------PDDQHT 261 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-------cccccc
Confidence 99999999999998654333 35567789999999999999999999999999999766543211 224789
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCC-ceeEEEEEccCCeEEeeecCccccccccC
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKG-VVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~-~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
+.|+++.+++.+ .++|+.||.|++||--+++++.++. +|.+ .|.+..|..+|+++++.+- +.++++|.+
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi 334 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEI 334 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeee
Confidence 999999999999 9999999999999999999999985 4544 7999999999999995554 445555544
No 37
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=185.64 Aligned_cols=186 Identities=19% Similarity=0.219 Sum_probs=161.1
Q ss_pred eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.|+|++ ..|++|+.|+.+++||+. .......+.+|++.|.|.+|+|.+++.+
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s---------------------------~a~v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLS---------------------------TAYVQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcC---------------------------CcEEEEEecCCcceeEeeccccCCCeEE
Confidence 478865 578899999999999998 3344557899999999999999989999
Q ss_pred EEEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+|||+||.|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+.++ .+.......|..
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G---------~qll~~~~~H~K 239 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTG---------GQLLTSMFNHNK 239 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCC---------ceehhhhhcccc
Confidence 99999999999999987 7777899999999999999999999988 468999999854 223334555999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
.|+|+++..++ |++|+-|+.|++||+.+.+.++.+. ..++|.+++.+|+++.++.|-.++.+...
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 99999999977 9999999999999999999999988 67999999999999999988888655544
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.5e-25 Score=169.79 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=168.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|+.+|.+|++++.|.++.||-.. .+..+.++.+|++.|+|+...- +...+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~---------------------------nGerlGty~GHtGavW~~Did~-~s~~l 67 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSL---------------------------NGERLGTYDGHTGAVWCCDIDW-DSKHL 67 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEec---------------------------CCceeeeecCCCceEEEEEecC-Cccee
Confidence 4688999999999999999999775 4788899999999999998754 66889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-----CCeEEEEeCCccccccccccccccceeee
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-----DGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
+||+.|.++++||+.+|+++..++.+.+|..+.|+++|++++.... .+.|.++|++.... .....++...+.
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~---~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS---DIDSEEPYLKIP 144 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh---hhcccCceEEec
Confidence 9999999999999999999999999999999999999998887754 47899999985432 123456677888
Q ss_pred ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370 156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD 226 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~ 226 (350)
.+...++.+.|.|-+ |++|.+||.|.+||+++++ .+.....|...|+.++++|+..++++++.|. ++|...
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 899999999999988 9999999999999999975 5555678999999999999999999998873 444443
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-26 Score=186.71 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=155.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.||++|+||||++.|.+..+|++.. ...-....++.+|..+|..++|+| +.+++
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~------------------------d~~~kl~~tlvgh~~~V~yi~wSP-DdryL 284 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVY------------------------DVHFKLKKTLVGHSQPVSYIMWSP-DDRYL 284 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEec------------------------CcceeeeeeeecccCceEEEEECC-CCCeE
Confidence 46999999999999999999999872 112345778899999999999977 56789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc-------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI------------- 145 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------- 145 (350)
++|+.|..+.+||+.+|.....+++. ..+.+++|.|||..+++|+.|+.+..||+..........
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence 99999999999999999998887755 789999999999999999999999999986432100000
Q ss_pred ------------------------------------------------------------cccccceeeeccCCceEEE-
Q 045370 146 ------------------------------------------------------------VGEDQHSVLKGHNGSITAL- 164 (350)
Q Consensus 146 ------------------------------------------------------------~~~~~~~~~~~~~~~i~~~- 164 (350)
.....++.+.||...-.-+
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 0000111233443322222
Q ss_pred -EecC--Ce-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370 165 -AFSA--SH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP 229 (350)
Q Consensus 165 -~~~~--~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (350)
+|-. +. +++|++|+.|+||+..+++++..+.+|...|.+++|+|....+++..+|+..+++|...
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 2221 12 89999999999999999999999999999999999999987655566666666666544
No 40
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=9.4e-26 Score=185.94 Aligned_cols=200 Identities=21% Similarity=0.296 Sum_probs=164.8
Q ss_pred CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|++.. .+|++|+.|++|++||+....... ....+...+.+|.+.|..++|++.+..+
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDL 242 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCC--------------------ccccceEEeecCCcceehhhccccchhh
Confidence 4677754 479999999999999998422211 1234566788999999999999988999
Q ss_pred EEEEeCCCcEEEEeCCC--CceEEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 80 FVSSSLDATCKVWDLGS--GILIQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~--~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
|++++.|+.+.|||+++ .++... ..|.+++.|++|+| ++..||+|+.|++|.+||+|+. ..+...+.
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---------~~~lh~~e 313 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---------NKPLHTFE 313 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---------ccCceecc
Confidence 99999999999999995 333333 45899999999999 5678899999999999999974 33667899
Q ss_pred ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc--------------eEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRR--------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
+|...|.++.|+|.. |++++.|+.+.|||+..- +++..-.+|...|..+.|+|+..++++...
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 999999999999987 999999999999999641 234555689999999999999999888888
Q ss_pred CccccccccCC
Q 045370 219 CQRKLKKDRMP 229 (350)
Q Consensus 219 ~~~~~~~~~~~ 229 (350)
++.++-+|.+.
T Consensus 394 eDN~LqIW~~s 404 (422)
T KOG0264|consen 394 EDNILQIWQMA 404 (422)
T ss_pred CCceEEEeecc
Confidence 88888888664
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=7.8e-25 Score=183.58 Aligned_cols=215 Identities=19% Similarity=0.229 Sum_probs=166.6
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccc-cccccccccccccccccEEEee------------------ccccccceeeecc
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRL-LKQTSELMHHSDQLDQRLIEME------------------LRSLRSLLHYSLE 62 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 62 (350)
.|||.|.|+|+|...|+|+|||.... .....+.....+++...-|..+ .-..+..+..+.+
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 58999999999999999999998752 1222222222333222111111 1112344556789
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE 141 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 141 (350)
|...|+++.|-|...-.++||+.|++|.+|+=.-.+...++ .|..-|.|+.|+|||..+++++.||.+.+||=.+++..
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 99999999998877788999999999999996555555554 47889999999999999999999999999998865433
Q ss_pred cccccccccceeee---ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE------------------------
Q 045370 142 DHFIVGEDQHSVLK---GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIR------------------------ 192 (350)
Q Consensus 142 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~------------------------ 192 (350)
..+. +|.+.|.++.|+||+ +++++.|.+++|||+.+++++.
T Consensus 226 ----------g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 226 ----------GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred ----------EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 3444 899999999999999 9999999999999998764432
Q ss_pred -------------------EeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 193 -------------------RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 193 -------------------~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
.+.+|...|+++..+|++++|++++.|+.+..+.
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 2345788999999999999999999998887665
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.9e-26 Score=197.28 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=166.8
Q ss_pred eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+++..+ .+|+++|.|+++++|++........ ............|...|++++..| +..++
T Consensus 418 a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------------------~~~~~~~~t~~aHdKdIN~Vaia~-ndkLi 478 (775)
T KOG0319|consen 418 AGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------------------PIVLTCRYTERAHDKDINCVAIAP-NDKLI 478 (775)
T ss_pred eecccCccEEEEecCCceEEEecCCCcccccc------------------cceehhhHHHHhhcccccceEecC-CCceE
Confidence 444444 6899999999999999983100000 001111223468999999999966 66899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+|||.|++.++|++........+ +|...|.|+.|+|..+.++++|.|++|+||.+.++. +..++.||..
T Consensus 479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----------ClkT~eGH~~ 548 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----------CLKTFEGHTS 548 (775)
T ss_pred EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----------eeeeecCccc
Confidence 99999999999999988888886 499999999999999999999999999999999654 4448999999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
.|..+.|-.++ |++++.||-+++|++.++.++.++..|...|++++.+|...++++|++|+++..+.+.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 99999999888 9999999999999999999999999999999999999999999999999888766644
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=3.9e-26 Score=174.58 Aligned_cols=188 Identities=16% Similarity=0.242 Sum_probs=160.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+.|.++|+||+.+..++|||+++ ...+...+.+|.+.|..+.|+..+ +.+
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~--------------------------p~App~E~~ghtg~Ir~v~wc~eD-~~i 158 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNR--------------------------PKAPPKEISGHTGGIRTVLWCHED-KCI 158 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccC--------------------------CCCCchhhcCCCCcceeEEEeccC-ceE
Confidence 58999999999999999999999984 344556678999999999999865 567
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++.+.|++|++||.+++..++++..+.+|+++.++++|++|.++. .+.|.+||..+....... .-+..
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~-----------k~P~n 226 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY-----------KMPCN 226 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec-----------cCccc
Confidence 777999999999999999999999999999999999998877765 578999999976544322 23367
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
|.+..++|+. +++|++|..++.||..++..+..+ .+|.++|.|+.|+|+|...++||.|+. +++|..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt 296 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQT 296 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEe
Confidence 8888999987 999999999999999999999886 799999999999999999998887753 334433
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=191.95 Aligned_cols=186 Identities=22% Similarity=0.228 Sum_probs=166.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+.+|.-.+++|+|.|-+|++||++. .-.+...+.+|...|.+++|+|.+.+.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~--------------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWEN--------------------------EWACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccC--------------------------ceeeeeEEcCcceEEEEEEecCCCccce
Confidence 46789999999999999999999993 3456778899999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCC--cEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGE--QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
++++-|++|+||.+.+..+..++ .|...|+|++|-+.| .+|++|+.|..|++||..+ ..++.++.+|
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt----------k~CV~TLeGH 226 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT----------KSCVQTLEGH 226 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------HHHHHHhhcc
Confidence 99999999999999998888876 499999999998844 6999999999999999994 4556689999
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
...|.++.|+|.- +++|++||+++||...+.+...++.-....+++++-.+.+..++.|...+.+
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 9999999999998 9999999999999999999888888777899999999998888877766543
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-25 Score=198.03 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=167.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|+|++.+++|||.|-.|+||+.. ..+++.++.+|-+.|..+.|++ .-.++
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk---------------------------~rrclftL~GHlDYVRt~~FHh-eyPWI 108 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYK---------------------------TRRCLFTLLGHLDYVRTVFFHH-EYPWI 108 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecc---------------------------cceehhhhccccceeEEeeccC-CCceE
Confidence 5899999999999999999999999 6888999999999999998866 66899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc---------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF--------------- 144 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------- 144 (350)
+++|.|.+|+||+..+++++..+ +|...|.|..|+|....++++|-|-+|++||+.........
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 99999999999999999999985 58899999999999999999999999999998643321110
Q ss_pred -cc---ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEee
Q 045370 145 -IV---GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 145 -~~---~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
.. ..-....+.||...|+-++|+|.. +++|+.|..|++|.++.-+ .+.++.+|.+.|+++-|+|...++++.
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 01 111224678999999999999987 9999999999999997654 355678999999999999999999966
Q ss_pred ecCccccccccC
Q 045370 217 SNCQRKLKKDRM 228 (350)
Q Consensus 217 ~~~~~~~~~~~~ 228 (350)
+.| +.+++|++
T Consensus 269 sED-ksirVwDm 279 (1202)
T KOG0292|consen 269 SED-KSIRVWDM 279 (1202)
T ss_pred CCC-ccEEEEec
Confidence 655 45555544
No 46
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=170.14 Aligned_cols=169 Identities=23% Similarity=0.358 Sum_probs=135.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|..||++++|||+||+++|||++. ........|..+|+++..+| +...|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~----------------------------~~~qR~~~~~spVn~vvlhp-nQteL 139 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRS----------------------------LSCQRNYQHNSPVNTVVLHP-NQTEL 139 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccC----------------------------cccchhccCCCCcceEEecC-CcceE
Confidence 46899999999999999999999982 22333456778888887755 45567
Q ss_pred EEEeCCCcEEEEeCCCCceE-------------------------------------------------EEE-ecCCcee
Q 045370 81 VSSSLDATCKVWDLGSGILI-------------------------------------------------QTQ-VYPQAVT 110 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~-------------------------------------------------~~~-~~~~~v~ 110 (350)
++|..+|.|++||+....+. ..+ .|.+.+.
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 78888888888887543111 111 2456688
Q ss_pred EEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc
Q 045370 111 AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR 188 (350)
Q Consensus 111 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~ 188 (350)
.+.++|++++|++++.|.+++||+...+ .+....+++|...+...+||.++ |++|+.|+.+++||+..+
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~---------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDF---------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCc---------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 8899999999999999999999998864 12223778999999999999999 999999999999999999
Q ss_pred eEEEEeccCCCceeEEEEE
Q 045370 189 VSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 189 ~~~~~~~~~~~~v~~l~~~ 207 (350)
+.+..+.+|..+..+++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999998888887764
No 47
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.3e-26 Score=182.92 Aligned_cols=254 Identities=16% Similarity=0.197 Sum_probs=182.2
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
..++||+.||.|+|||+. ...+...+.+|.+.|.++++.. ..+++++.|.
T Consensus 80 s~~aSGs~DG~VkiWnls---------------------------qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK 129 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS---------------------------QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDK 129 (433)
T ss_pred hhhhccccCceEEEEehh---------------------------hhhhhheeecccCceeeEEecc---cceEEecCCc
Confidence 568999999999999999 5788889999999999999854 5588999999
Q ss_pred cEEEEeCCC---------------------------CceEEE-----------Ee-cCCceeEEEEcCCCc-EEEEEccC
Q 045370 88 TCKVWDLGS---------------------------GILIQT-----------QV-YPQAVTAIAFHPGEQ-LLFAGSID 127 (350)
Q Consensus 88 ~v~vwd~~~---------------------------~~~~~~-----------~~-~~~~v~~~~~~~~~~-~l~~~~~d 127 (350)
+|+.|.+.. |+.+.. +. ..+.|.++.|+|... .|+++..|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 999997432 111111 11 124578888999665 56667799
Q ss_pred CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEE
Q 045370 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNL 204 (350)
Q Consensus 128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l 204 (350)
+.|.+||++.......... ...-+.|+|+|+. +++|++|..++.||++.. .++....+|.++|.++
T Consensus 210 rsIvLyD~R~~~Pl~KVi~-----------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVIL-----------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred CceEEEecccCCccceeee-----------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence 9999999997654433222 1345779999977 999999999999999984 5677788999999999
Q ss_pred EEEccCCeEEeeecC--ccccccccCCccc-------cCCCCccccccceEEeeccccCCCCcccccccccchhhHhhhh
Q 045370 205 VVIRQSSLLSEVSNC--QRKLKKDRMPSLE-------KYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSE 275 (350)
Q Consensus 205 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 275 (350)
+|||.|+-+++||.| .+++......+-. ..+.+..++.+.+.++ .|+.++.+.+|-..+.
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~---SGSdd~nvRlWka~As-------- 347 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII---SGSDDGNVRLWKAKAS-------- 347 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE---ecCCCcceeeeecchh--------
Confidence 999999999988887 4555544332221 1244566777777776 5667888888876663
Q ss_pred hhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045370 276 LQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQ 314 (350)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
++.|.....|...-...+.+++..+...++.++-++.+
T Consensus 348 -eklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~ 385 (433)
T KOG0268|consen 348 -EKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRH 385 (433)
T ss_pred -hhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhcc
Confidence 33333334444444455555555555566666666655
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-25 Score=187.98 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=191.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|+|...+++++-..|.|.|||.+ +...+..+.-...+|.+..|.. ..+++
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnye---------------------------tqtmVksfeV~~~PvRa~kfia-RknWi 70 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYE---------------------------TQTMVKSFEVSEVPVRAAKFIA-RKNWI 70 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecc---------------------------cceeeeeeeecccchhhheeee-ccceE
Confidence 5789999999999999999999999 5777888888889999999977 66899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|..|+||+++++..+..+. |++-|++++.||...++++++.|-.|++||... .-.+...+.+|..
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---------~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---------EWACEQTFEGHEH 141 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---------ceeeeeEEcCcce
Confidence 999999999999999999998875 999999999999999999999999999999884 3445568999999
Q ss_pred ceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC--CeEEeeecCccccccccCCcc---
Q 045370 160 SITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQRKLKKDRMPSL--- 231 (350)
Q Consensus 160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~--- 231 (350)
.|.+++|+|.. +++++-|++|+||.+.+..+..++.+|...|.+++|-+-| .+|++ +.|+..+++|+...-
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-gaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-GADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-cCCCceEEEeecchHHHH
Confidence 99999999976 9999999999999999999999999999999999998765 68884 456666677754332
Q ss_pred ------ccCCCCccccccceEEeeccccCCCCcccccccccchhhH
Q 045370 232 ------EKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQ 271 (350)
Q Consensus 232 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (350)
...+....+.+....++ .|+.||.+.+|.+.+-....
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiii---sgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIII---SGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred HHhhcccccceEEEecCCCcEEE---EecCCccEEEecCcceehhh
Confidence 22333344444444444 56678888888777644433
No 49
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.5e-24 Score=192.31 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=133.6
Q ss_pred ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--------eEEE-EecCCceeEEEEcCCCcE-EEE
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--------LIQT-QVYPQAVTAIAFHPGEQL-LFA 123 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~-~~~~~~v~~~~~~~~~~~-l~~ 123 (350)
...+..+.+|.+.|.+++|+|.++.+|++|+.|++|++||+.++. .+.. ..|...|.+++|+|++.. +++
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 345677889999999999988667899999999999999998642 1222 358889999999998875 468
Q ss_pred EccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370 124 GSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV 201 (350)
Q Consensus 124 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 201 (350)
++.|+.|++||++++.. ...+. |...|.+++|+|++ |++++.|+.|+|||+++++.+.++.+|.+.+
T Consensus 144 gS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred EeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 89999999999985432 22333 55789999999999 8888899999999999999999999898765
Q ss_pred eEE-----EEEccCCeEEeeecCc---cccccccCCcccc
Q 045370 202 TNL-----VVIRQSSLLSEVSNCQ---RKLKKDRMPSLEK 233 (350)
Q Consensus 202 ~~l-----~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 233 (350)
.+. .|++++.+|++++.+. +.+.+|++.....
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 433 3458888888877664 4677776664443
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3e-26 Score=183.01 Aligned_cols=181 Identities=25% Similarity=0.323 Sum_probs=155.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
.|...+++|..|++|+|||.. ...+...+.+|++.|.|+.| +...+++|+
T Consensus 205 YDD~kiVSGlrDnTikiWD~n---------------------------~~~c~~~L~GHtGSVLCLqy---d~rviisGS 254 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKN---------------------------SLECLKILTGHTGSVLCLQY---DERVIVSGS 254 (499)
T ss_pred ecchhhhcccccCceEEeccc---------------------------cHHHHHhhhcCCCcEEeeec---cceEEEecC
Confidence 466789999999999999998 57788889999999999998 446899999
Q ss_pred CCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 85 LDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
.|.+|++||+++|+++.. +.|...|..+.|+ +.++++++.|.++.+||+.... .....+.+.+|...|+.
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNV 325 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheee
Confidence 999999999999999988 6788999999995 6799999999999999998643 22334477899999999
Q ss_pred EEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370 164 LAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD 226 (350)
Q Consensus 164 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~ 226 (350)
+.|+...+++++.|.+|++|++.+++++.++.+|.-.|.|+.+ .++++++|++|. ++|...
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred eccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc
Confidence 9999888999999999999999999999999999998888776 578888777763 444443
No 51
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.7e-25 Score=172.09 Aligned_cols=192 Identities=22% Similarity=0.327 Sum_probs=153.8
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+||| ...+|+.||.||+||+|+++... ...-.....|.++|.+++|+. ++..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g-------------------------~~~~ka~~~~~~PvL~v~Wsd-dgsk 86 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSG-------------------------QLVPKAQQSHDGPVLDVCWSD-DGSK 86 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCC-------------------------cccchhhhccCCCeEEEEEcc-CCce
Confidence 68999 55677799999999999998310 111234567999999999955 7788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccc--------------
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDH-------------- 143 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-------------- 143 (350)
+++|+.|+.+++||+.+++....-.|.++|.++.|-+... .|++|+.|.+|++||.+.......
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY 166 (347)
T ss_pred EEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence 9999999999999999998888888999999999988665 899999999999999986431000
Q ss_pred -----------------------------------------------------------cccc--cccceeeeccCC---
Q 045370 144 -----------------------------------------------------------FIVG--EDQHSVLKGHNG--- 159 (350)
Q Consensus 144 -----------------------------------------------------------~~~~--~~~~~~~~~~~~--- 159 (350)
.... ......++.|..
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence 0000 012224556652
Q ss_pred ------ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 160 ------SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 160 ------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
.|++|+|+|.. |++++.||+..+||-.....+++.+.|..+|++.+|+.+|.+++-+.+
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 57788999976 999999999999999999999999999999999999999998886544
No 52
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=5.4e-24 Score=189.16 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=156.3
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEe-eccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEM-ELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+++|+..+++++.+..+..|+...+.. ++.. ...........+.+|.+.|.+++|+|.++.+|+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~---------------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTA---------------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceE---------------EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 457877788888888889998653110 0000 001111112346799999999999876778999
Q ss_pred EEeCCCcEEEEeCCCCc-------eEEE-EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370 82 SSSLDATCKVWDLGSGI-------LIQT-QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~-------~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
+|+.|++|++||+.++. .+.. ..|...|.+++|+|++ ++|++++.|+.|++||+..+ ....
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----------~~~~ 162 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG----------KAVE 162 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC----------eEEE
Confidence 99999999999997653 2333 3588899999999975 69999999999999999853 3344
Q ss_pred eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCc-eeEEEEEccCCeEEeeec---Cccccccc
Q 045370 153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGV-VTNLVVIRQSSLLSEVSN---CQRKLKKD 226 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~---~~~~~~~~ 226 (350)
.+.+|...|.+++|+|++ |++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++. .++.+.+|
T Consensus 163 ~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 163 VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 677899999999999998 999999999999999999999999888765 456789998887776553 25667777
Q ss_pred cCCccc
Q 045370 227 RMPSLE 232 (350)
Q Consensus 227 ~~~~~~ 232 (350)
+.....
T Consensus 243 Dlr~~~ 248 (493)
T PTZ00421 243 DTRKMA 248 (493)
T ss_pred eCCCCC
Confidence 665443
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.8e-25 Score=187.01 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=151.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcccccccccc----c--cc-----ccccc-ccEEEeec------------------
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSEL----M--HH-----SDQLD-QRLIEMEL------------------ 50 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~----~--~~-----~~~~~-~~~~~~~~------------------ 50 (350)
+++.|.|-+|+|||.|.+|++||+.......... + .+ .-+.. ..++....
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 4788999999999999999999998522211111 0 00 00001 11111100
Q ss_pred --cccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEec------CCceeEEEEcCCCcEE
Q 045370 51 --RSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVY------PQAVTAIAFHPGEQLL 121 (350)
Q Consensus 51 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~------~~~v~~~~~~~~~~~l 121 (350)
...-.-+....+|...++|.+|+|.+...|+|++.||++++||+..-+ .+..+.+ .-+++.++|+|+++.|
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 001112345579999999999999888999999999999999998643 3333432 2368999999999999
Q ss_pred EEEccCCeEEEEeCCccccccccccccccceeeeccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEecc
Q 045370 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNH 196 (350)
Q Consensus 122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~ 196 (350)
++|+.||.|.+|+....... .....-.+|.. .|+|+.|+++| |++-+.|+++++||++.. +++....+
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~-------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVR-------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred hhcccCCceeeeecCCcccc-------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999998654322 22223456766 89999999999 999999999999999974 45555443
Q ss_pred --CCCceeEEEEEccCCeEEeeecC
Q 045370 197 --KKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 197 --~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
..-+-+.++|||+.+++++|..-
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred CCccCCCCccccCCCceEEEecccc
Confidence 23356889999999999988763
No 54
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=189.24 Aligned_cols=211 Identities=21% Similarity=0.327 Sum_probs=169.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccccc-----ccccccccc-----------------ccc--ccEEEeeccccccceeee
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQ-----TSELMHHSD-----------------QLD--QRLIEMELRSLRSLLHYS 60 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~~~~ 60 (350)
|.++||+|||.||.|++|++...... .....+|+. .-+ ..+|...... ..+..++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 56789999999999999998753332 111112211 111 1233332222 3567788
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--eEEEE----------ecCCceeEEEEcCCCcEEEEEccCC
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--LIQTQ----------VYPQAVTAIAFHPGEQLLFAGSIDG 128 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg 128 (350)
..|.+.|.|+++...+..++|+||.|+.|.+||++++. .+.++ ++..+|++++.++.|..|++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 89999999999977788899999999999999999872 22221 3567899999999999999999999
Q ss_pred eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370 129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
.+++||.++ ...+..+.+|...|.++..+++| +++++.||+|++||+...+++.++..|...|+++..
T Consensus 194 ~lr~wDprt----------~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 194 DLRLWDPRT----------CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ceEEecccc----------ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 999999994 55566888999999999999999 999999999999999999999999999999999999
Q ss_pred EccCCeEEeeecCccccccc
Q 045370 207 IRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~~ 226 (350)
+|+-..+++|+.++.+.+..
T Consensus 264 ~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred CCCcceEEecCCCCcEEecc
Confidence 99999999999888776554
No 55
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5e-24 Score=190.40 Aligned_cols=191 Identities=14% Similarity=0.185 Sum_probs=141.7
Q ss_pred CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+|+ +.+|+||+.||+|+|||+.+...... ........+.+|...|.+++|+|....+
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEEEEECCCCCeE
Confidence 579997 78999999999999999973211000 0012344567899999999998865566
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+++++.|++|++||+.+++....+.+...|.+++|+|+|.+|++++.|+.|++||++++ ..+..+.+|.+
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----------~~i~tl~gH~g 210 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----------EIASSFHIHDG 210 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----------cEEEEEecccC
Confidence 78999999999999999988877778889999999999999999999999999999954 33346778887
Q ss_pred ceEEEE-----ecCCe--EEEEeCCC----cEEEEECCC-ceEEEEecc--CCCceeEEEEEccCCeEEeeecCc
Q 045370 160 SITALA-----FSASH--LISASEDK----TVCLWDVTR-RVSIRRFNH--KKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 160 ~i~~~~-----~~~~~--l~s~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.+.+.. |++++ +++++.|+ .|+|||+++ .+++..+.. +.+.+......+++.++++|++|.
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 654433 44665 78877664 799999995 566665542 233333333345577787776653
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=165.35 Aligned_cols=182 Identities=21% Similarity=0.291 Sum_probs=149.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|.|++||+||.|.++.||.-.. ....++..+.+|...|.+++|+. ++.+|
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~-sG~~L 120 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKED-------------------------GEFECVATLEGHENEVKCVAWSA-SGNYL 120 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCC-------------------------CceeEEeeeeccccceeEEEEcC-CCCEE
Confidence 68999999999999999999997551 13456788999999999999965 78999
Q ss_pred EEEeCCCcEEEEeCCCCc---eEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 81 VSSSLDATCKVWDLGSGI---LIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
|+|++|++|-||.+..+. +... .+|...|..+.|||...+|++++.|.+|++|.-.... .-.....+.+
T Consensus 121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------dW~c~~tl~g 193 (312)
T KOG0645|consen 121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------DWECVQTLDG 193 (312)
T ss_pred EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-------CeeEEEEecC
Confidence 999999999999998553 3333 3589999999999999999999999999999876211 2334558889
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
|...|.+++|+|.| |++++.|++|+||-+.+ .+ ..|..++..+.|. ...|+++++|+.+
T Consensus 194 ~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i 255 (312)
T KOG0645|consen 194 HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAI 255 (312)
T ss_pred ccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEE
Confidence 99999999999988 99999999999998662 22 2367889999998 5567777776533
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=7.1e-26 Score=179.47 Aligned_cols=186 Identities=23% Similarity=0.323 Sum_probs=153.6
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|||||+||++|+.||.|.|||..++...... .......+.-+.++|.|+.|+. +...++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-------------------kYQAqd~fMMmd~aVlci~FSR-DsEMlA 279 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-------------------KYQAQDNFMMMDDAVLCISFSR-DSEMLA 279 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhh-------------------hhhhhcceeecccceEEEeecc-cHHHhh
Confidence 59999999999999999999998742111100 0111123455789999999955 778999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 82 SSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+|+.||.|++|.+.+|.+++.+. |...|+|+.|+.|+..+++++.|-++++.-+.+++ ....+.+|..
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK----------~LKEfrGHsS 349 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK----------CLKEFRGHSS 349 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----------hHHHhcCccc
Confidence 99999999999999999999875 89999999999999999999999999999998544 4448899999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCC-eEEeee
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSS-LLSEVS 217 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~-~l~~~~ 217 (350)
.|+...|.++| +++++.||+|++|+..+..++.++.. ...+|.++-..|.+. .++++.
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 99999999999 99999999999999999999998863 445788888888653 444343
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=180.99 Aligned_cols=183 Identities=24% Similarity=0.322 Sum_probs=154.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|-.||++||.|...|.|+|||+. ....++.+.+|+.+|..+.|++.++..+
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k---------------------------~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMK---------------------------SRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccc---------------------------cHHHHHHHhhccCceeEEEecccCCeEE
Confidence 3688899999999999999999976 5678888999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
++|+.|+.+++||+.+...... ..|.+.|+|.+|+|. +..+++|+.||.|++||.+... ..+ .--.|.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v-~elnhg 196 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---------SRV-VELNHG 196 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---------cee-EEecCC
Confidence 9999999999999999886433 469999999999995 5588999999999999999531 222 223688
Q ss_pred CceEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 159 GSITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.+|-.+.+-|.| +++......|+|||+.+ ++.+..+..|...|+|+.+..++..|++++-|+
T Consensus 197 ~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 999999999997 44444466899999995 566666666999999999999999999888774
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=5.6e-24 Score=203.06 Aligned_cols=195 Identities=19% Similarity=0.251 Sum_probs=151.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|+|++||+|+.|+.|+|||......... ......... .+...+.+++|++..+.++
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEEeccCCCCEE
Confidence 57999999999999999999999862100000 000111122 3456889999988778899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
++++.||+|++||+.+++.+..+ .|...|.+++|+| ++.+|++|+.||.|++||++.+.. ...+..+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----------~~~~~~~- 617 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----------IGTIKTK- 617 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----------EEEEecC-
Confidence 99999999999999998877775 5889999999997 788999999999999999985432 2244433
Q ss_pred CceEEEEecC-Ce--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 159 GSITALAFSA-SH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 159 ~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
..+.++.|++ ++ |++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|+. +++|++
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~ 689 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDL 689 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeC
Confidence 5789999964 45 9999999999999998865 567778899999999997 6778887776643 444544
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.8e-25 Score=194.15 Aligned_cols=196 Identities=17% Similarity=0.262 Sum_probs=160.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.||.++ +|+++|.|.+|++|++. ...++.. ..|.+.|+|++|+|.+.++|
T Consensus 375 lSWSKn~-fLLSSSMDKTVRLWh~~---------------------------~~~CL~~-F~HndfVTcVaFnPvDDryF 425 (712)
T KOG0283|consen 375 LSWSKNN-FLLSSSMDKTVRLWHPG---------------------------RKECLKV-FSHNDFVTCVAFNPVDDRYF 425 (712)
T ss_pred cccccCC-eeEeccccccEEeecCC---------------------------CcceeeE-EecCCeeEEEEecccCCCcE
Confidence 5688765 89999999999999998 3444444 57999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++|+-||.|+||++...+++.......-|++++|.|+|++.++|+.+|.+++|+....++.....+.....+... |. .
T Consensus 426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~-~~-r 503 (712)
T KOG0283|consen 426 ISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ-GK-R 503 (712)
T ss_pred eecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc-Cc-e
Confidence 999999999999999999888888889999999999999999999999999999987766544433333222222 23 8
Q ss_pred eEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecCccccccccC
Q 045370 161 ITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
|+.+.|.|.. +++.+.|..|||||.+...++..+.++.. .-....|+.||++|++++.| .-+.+|..
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD-s~VYiW~~ 575 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED-SWVYIWKN 575 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC-ceEEEEeC
Confidence 9999999765 88899999999999999999998886533 34567899999999999854 44445543
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.1e-24 Score=178.06 Aligned_cols=237 Identities=17% Similarity=0.175 Sum_probs=176.7
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
..++|+++..+.|.|||..+........ ....+-..+.+|...-.+++|++...-.+++++.|
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCccccc-----------------ccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 4578888999999999988421111000 01223346788988888999988777889999999
Q ss_pred CcEEEEeCCCCce-------EEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 87 ATCKVWDLGSGIL-------IQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 87 ~~v~vwd~~~~~~-------~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
++|++||+..... ... -.|...|..++|++ +...|++++.|+.+.|||.|++ ..++.....+|
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~~~ah 271 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHSVKAH 271 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccccccc
Confidence 9999999986432 111 35889999999999 5668889999999999999963 23344467799
Q ss_pred CCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcccc
Q 045370 158 NGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEK 233 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 233 (350)
.+.|+|++|+|-+ ||+|+.|++|++||+|+ .++++++.+|...|.+|.|+|...-+++.++.++.+.+|++...+.
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 9999999999977 99999999999999998 4578899999999999999999876665666777777887776665
Q ss_pred CCCCccccccceEEeeccccCCCCcccccccccch
Q 045370 234 YPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKS 268 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (350)
..........-..++....||...+..+.+.+...
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCC
Confidence 43211111112234555567777777777776643
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=192.80 Aligned_cols=189 Identities=23% Similarity=0.293 Sum_probs=165.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|...+++++-..|.|.+||.+ .+.++..+..|.++|.+++|+| ...+|
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYR---------------------------M~tli~rFdeHdGpVRgv~FH~-~qplF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYR---------------------------MGTLIDRFDEHDGPVRGVDFHP-TQPLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhh---------------------------hhhHHhhhhccCCccceeeecC-CCCeE
Confidence 6899999999999999999999999 6888889999999999999976 67899
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|-.|+||++.+.+++.+ .+|-+.|+.+.||+.-.+|+++|.|-+|+||+.. ..+.+..++||..
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq----------sr~~iavltGHnH 136 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ----------SRKCIAVLTGHNH 136 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc----------CCceEEEEecCce
Confidence 9999999999999999999888 5799999999999999999999999999999998 4566669999999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCce-----------------------------EEEEeccCCCceeEEEEEc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRV-----------------------------SIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~ 208 (350)
.|.|..|+|.. ++++|-|.+|||||+...+ .-+.+.+|.-.|.-++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 99999999965 9999999999999985310 1133568999999999999
Q ss_pred cCCeEEeeecCccccccccC
Q 045370 209 QSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~ 228 (350)
.-.++++| +|++.+++|.+
T Consensus 217 TlpliVSG-~DDRqVKlWrm 235 (1202)
T KOG0292|consen 217 TLPLIVSG-ADDRQVKLWRM 235 (1202)
T ss_pred CcceEEec-CCcceeeEEEe
Confidence 99999955 55566666643
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2e-23 Score=175.88 Aligned_cols=182 Identities=29% Similarity=0.399 Sum_probs=156.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+|++++|++++.||.|++||+. .......+..|...+.++.|.+. +.++
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 108 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLE---------------------------TGECVRTLTGHTSYVSSVAFSPD-GRIL 108 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcC---------------------------cccceEEEeccCCcEEEEEEcCC-CCEE
Confidence 4689999999999999999999998 34555666788889999999774 6788
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++++.|+.|.+||+.+++....+. |...+.+++|+|++.++++++.||.|++||++.. .....+..|..
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~ 178 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------KCVATLTGHTG 178 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc----------ccceeEecCcc
Confidence 888889999999999888777765 7788999999999999999888999999999843 33446668888
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.+.++.|+|++ +++++.|+.|++||+++++.+..+..|..++.+++|+|++.++++++.++
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999997 88888899999999999999998877888999999999988888666343
No 64
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=173.35 Aligned_cols=182 Identities=19% Similarity=0.293 Sum_probs=161.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++||+-..||++++.|+.|+-||++ ....++.+.+|-..|.|+..+| .-..|
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe---------------------------~nkvIR~YhGHlS~V~~L~lhP-Tldvl 250 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLE---------------------------YNKVIRHYHGHLSGVYCLDLHP-TLDVL 250 (460)
T ss_pred eeecccCceEEEecCCCeeEEEech---------------------------hhhhHHHhccccceeEEEeccc-cceeE
Confidence 5789989999999999999999999 6888899999999999999876 45789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++|+.|++|++||++.+ +....+..|..
T Consensus 251 ~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag----------kt~~tlt~hkk 320 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG----------KTMITLTHHKK 320 (460)
T ss_pred EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC----------ceeEeeecccc
Confidence 999999999999999998888865 9999999999999999999999999999999954 34447888999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
.+.+++.+|.. +++++.| .|+-|++..+..+..+.+|..-+.+++...|+-++. |+..+.+
T Consensus 321 svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~-G~dng~~ 383 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS-GGDNGSI 383 (460)
T ss_pred eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEE-cCCceEE
Confidence 99999999987 8888777 689999999999999999999999999998887665 5544433
No 65
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=1.7e-23 Score=175.61 Aligned_cols=195 Identities=22% Similarity=0.310 Sum_probs=154.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec---cccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL---EHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~ 77 (350)
+.|||||.+++|.+.||+|.+||=. .+..+..+. +|.+.|.+++|+| ++
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGk---------------------------tge~vg~l~~~~aHkGsIfalsWsP-Ds 247 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGK---------------------------TGEKVGELEDSDAHKGSIFALSWSP-DS 247 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCC---------------------------CccEEEEecCCCCccccEEEEEECC-CC
Confidence 5799999999999999999999977 355555554 8999999999966 77
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEe--------------------------------------------cCCceeEEE
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQV--------------------------------------------YPQAVTAIA 113 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~--------------------------------------------~~~~v~~~~ 113 (350)
..++|++.|.++++||+.+++++.++. |...|+++.
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence 889999999999999998765443321 345799999
Q ss_pred EcCCCcEEEEEccCCeEEEEeCCccccccc--------------------------------------------------
Q 045370 114 FHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-------------------------------------------------- 143 (350)
Q Consensus 114 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------------------------- 143 (350)
.+|++.+|++|+.||.|.-|+...+.....
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999999999999999999999865430000
Q ss_pred --------------------------------------------------------------cccc---cccceeeeccC
Q 045370 144 --------------------------------------------------------------FIVG---EDQHSVLKGHN 158 (350)
Q Consensus 144 --------------------------------------------------------------~~~~---~~~~~~~~~~~ 158 (350)
+.+. .........|.
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 0000 00111345688
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE-EeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIR-RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
++|++++++|++ |++|...+.+.+||..+++... .+.-|...|.+++|+|+..++|+|+-|..++
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence 999999999999 9999999999999999887632 3345899999999999999999988875544
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5e-24 Score=174.85 Aligned_cols=188 Identities=27% Similarity=0.366 Sum_probs=163.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+|+...+++++.|-.|+||... ..........|..+|+.+..++ .+.||
T Consensus 267 v~~~~~~~~v~~aSad~~i~vws~~---------------------------~~s~~~~~~~h~~~V~~ls~h~-tgeYl 318 (506)
T KOG0289|consen 267 VKFHKDLDTVITASADEIIRVWSVP---------------------------LSSEPTSSRPHEEPVTGLSLHP-TGEYL 318 (506)
T ss_pred EEeccchhheeecCCcceEEeeccc---------------------------cccCccccccccccceeeeecc-CCcEE
Confidence 3588999999999999999999987 3344556678999999998865 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecC---CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
++++.|++..+.|++++..+....+. -.+++.+|||||..|.+|+.||.|++||+.. ......|.+|
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks----------~~~~a~Fpgh 388 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS----------QTNVAKFPGH 388 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC----------ccccccCCCC
Confidence 99999999999999999988877664 3599999999999999999999999999994 3455589999
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC-CCceeEEEEEccCCeEEeeecCccccccc
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK-KGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
.++|..++|+.+| |++++.|+.|++||+|..+...++... ..++.++.|.+.|.+|+.++.+..+..+.
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999 999999999999999998888887632 33799999999999999998887666554
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=2.7e-23 Score=175.03 Aligned_cols=189 Identities=29% Similarity=0.427 Sum_probs=157.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|++++|++++.||.|++|++. ..........|...+..+.|.+ ++.++
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~l 66 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLE---------------------------TGELLRTLKGHTGPVRDVAASA-DGTYL 66 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEee---------------------------CCCcEEEEecCCcceeEEEECC-CCCEE
Confidence 5799999999999999999999998 3445566778889999999976 55789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++++.||.|++||+.+++....+. +...+.++.|++++.++++++.||.+.+||++.. .....+..|..
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~ 136 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTD 136 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------EEEEEeccCCC
Confidence 999999999999999876666654 6678999999999889998888999999999843 23335667888
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
.+.++.|+|++ +++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.++ .+.+|+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~ 206 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG-TIKLWDL 206 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC-cEEEEEC
Confidence 99999999977 55566699999999999999999988888999999999998888777643 3444443
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-24 Score=166.24 Aligned_cols=184 Identities=22% Similarity=0.289 Sum_probs=156.4
Q ss_pred eecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.|++ +++.++++|.|++|++|+.. ....+.++.+|...|....|+|..++++
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~---------------------------r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPN---------------------------RPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred ccccccceeEEeeccCCceEeecCC---------------------------CCcceEeecCCccEEEEEecCCCCCCeE
Confidence 3444 35678888999999999998 4667788999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCC-CceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGS-GILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
++++.|+++++||++. |+.+....|...+.|+.|+. +.+.+++|+.|+.|+.||+++. ..++..+.+|.
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~---------r~pl~eL~gh~ 234 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL---------RTPLFELNGHG 234 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc---------cccceeecCCc
Confidence 9999999999999986 44444445778999999998 6678899999999999999964 34566889999
Q ss_pred CceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEcc-CCeEEeeecCcc
Q 045370 159 GSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNCQR 221 (350)
Q Consensus 159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~~~ 221 (350)
-.|..+.|+|.. |++++.|-++||||... ...+.+...|..-+..+.|++. +.++++++.|..
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccc
Confidence 999999999987 99999999999999885 4566777889999999999986 568887877754
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-24 Score=183.54 Aligned_cols=190 Identities=19% Similarity=0.292 Sum_probs=161.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~ 79 (350)
+.|+++|.+|++|..+|.|.|||.. .......+.+ |...|-+++|. ...
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~---------------------------~~k~~~~~~~~h~~rvg~laW~---~~~ 272 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVK---------------------------EQKKTRTLRGSHASRVGSLAWN---SSV 272 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehh---------------------------hccccccccCCcCceeEEEecc---Cce
Confidence 5799999999999999999999998 4556666666 99999999995 567
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+.+|+.|+.|..+|++..+.... ..|...|..+.|++++.++++|+.|+.+.|||.. ...+...+..|
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~----------~~~p~~~~~~H 342 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL----------SPEPKFTFTEH 342 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC----------CccccEEEecc
Confidence 99999999999999998765544 4589999999999999999999999999999995 45666688999
Q ss_pred CCceEEEEecCCe---EEEEe--CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec-CccccccccCCcc
Q 045370 158 NGSITALAFSASH---LISAS--EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN-CQRKLKKDRMPSL 231 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 231 (350)
.+.|.+++|+|-. ||+|+ .|+.|++||..++..+..+. ..+.|.+|.|++..+-|+++.+ ....+.+|.++.+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 9999999999976 77776 69999999999999999887 4678999999999876665544 3455666655553
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=2.4e-25 Score=177.90 Aligned_cols=176 Identities=23% Similarity=0.330 Sum_probs=152.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+..-|.+.+++|+.|.+|+|||++ ++.++.++.+|.+.|..+.|+ +.+++
T Consensus 242 CLqyd~rviisGSSDsTvrvWDv~---------------------------tge~l~tlihHceaVLhlrf~---ng~mv 291 (499)
T KOG0281|consen 242 CLQYDERVIVSGSSDSTVRVWDVN---------------------------TGEPLNTLIHHCEAVLHLRFS---NGYMV 291 (499)
T ss_pred eeeccceEEEecCCCceEEEEecc---------------------------CCchhhHHhhhcceeEEEEEe---CCEEE
Confidence 344577899999999999999999 688999999999999999994 35799
Q ss_pred EEeCCCcEEEEeCCCCceEEE----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 82 SSSLDATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+++.|.++.+||+....-+.. .+|...|+.+.|+ .++|++++.|.+|++|++.+ .+.++.+.+|
T Consensus 292 tcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st----------~efvRtl~gH 359 (499)
T KOG0281|consen 292 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST----------CEFVRTLNGH 359 (499)
T ss_pred EecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc----------eeeehhhhcc
Confidence 999999999999987653222 4688999999994 66999999999999999995 4555688999
Q ss_pred CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
...|.|+.+....+++|+.|.+|++||+..|.++..+++|..-|.++.|. .+.+++|+.|++
T Consensus 360 kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk 421 (499)
T KOG0281|consen 360 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 421 (499)
T ss_pred cccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence 99999999987779999999999999999999999999999999999994 667777776653
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=167.44 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=159.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.||.||.+||||+.+|.|+||+.. .+.....+..--..+.-+.|+| ...+|
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~s---------------------------tg~~~~~~~~e~~dieWl~WHp-~a~il 163 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVS---------------------------TGGEQWKLDQEVEDIEWLKWHP-RAHIL 163 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcc---------------------------cCceEEEeecccCceEEEEecc-cccEE
Confidence 4799999999999999999999998 4555555555667788888877 77899
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc--------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI-------------- 145 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------- 145 (350)
+.|+.||.|-+|.+.++...+. .+|..++++=.|.|+|+.++++..||+|++|+..++.......
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 9999999999999999655554 4699999999999999999999999999999998765211100
Q ss_pred -----------------------------------------------------------------------cccccceee
Q 045370 146 -----------------------------------------------------------------------VGEDQHSVL 154 (350)
Q Consensus 146 -----------------------------------------------------------------------~~~~~~~~~ 154 (350)
......+..
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 000011123
Q ss_pred eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
-.|..+|+.+.|-+.. |++++.||.|+.||.|+|+++.++.+|..+|.+++++|++++++++|.|.
T Consensus 324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 4578889999999954 99999999999999999999999999999999999999999999988875
No 72
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=188.82 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
+.++|||++..|.|.+||+... .....+..+..|...+.++.|++...++|++|+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence 4579999999999999999831 0144556778999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
||+|++||++......++ .....|+.|.|+| .+..|+++...|.+.+||++. .......+.+|.++|.|
T Consensus 155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq---------p~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ---------PDRCEKKLTAHNGPVLC 225 (839)
T ss_pred CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC---------chhHHHHhhcccCceEE
Confidence 999999999988776664 4677899999999 577899999999999999995 44555688899999999
Q ss_pred EEecCCe--EEEEeCCCcEEEEECCCceE--EEEeccCCCceeEEEEEccCCeEEeeec--Ccccccccc
Q 045370 164 LAFSASH--LISASEDKTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQSSLLSEVSN--CQRKLKKDR 227 (350)
Q Consensus 164 ~~~~~~~--l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~--~~~~~~~~~ 227 (350)
+.|+|++ ||||+.|+.|+|||+.+.+. +.++. ...+|.+|.|=|..++.++.+. .+.-+.+|+
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 9999988 99999999999999986543 44444 4578999999999876554443 234444443
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=3.3e-24 Score=178.10 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=156.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+++|..|+|+|.|+.|++||+++ +.+...+ .-...+.|+.|.|.+.+.|
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtET---------------------------G~~~~~f-~~~~~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTET---------------------------GQVLSRF-HLDKVPTCVKFHPDNQNIF 315 (503)
T ss_pred hhccccCCeeeeeecceeeeeecccc---------------------------ceEEEEE-ecCCCceeeecCCCCCcEE
Confidence 57999999999999999999999993 4444433 2345678888888777999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc----------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH---------------- 143 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------- 143 (350)
++|+.|+.|+.||++++++++.+. |-+.|..+.|-++|+.+++.+.|+.+++|+.+.......
T Consensus 316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 999999999999999999888864 778999999999999999999999999999876431110
Q ss_pred --------------------cccccccceeeeccC--CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC
Q 045370 144 --------------------FIVGEDQHSVLKGHN--GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG 199 (350)
Q Consensus 144 --------------------~~~~~~~~~~~~~~~--~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 199 (350)
..........+.+|. +.-..+.|||+| |++|+.||.+.+||.++-+.+..+.+|.+
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence 000111223456664 456678899999 99999999999999999999999999999
Q ss_pred ceeEEEEEccC-CeEEeeecCcc
Q 045370 200 VVTNLVVIRQS-SLLSEVSNCQR 221 (350)
Q Consensus 200 ~v~~l~~~~~~-~~l~~~~~~~~ 221 (350)
++..+.|+|.. ..+++++.++.
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGL 498 (503)
T ss_pred ceEEEEecCCCcceeEecccCce
Confidence 99999999986 46777776653
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=4.5e-23 Score=166.57 Aligned_cols=190 Identities=17% Similarity=0.257 Sum_probs=157.9
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cEEEEEe
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TFFVSSS 84 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~ 84 (350)
+++++||++||.+++||.. +.....+.+|.++|.+++|...+. ..|++++
T Consensus 115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 5799999999999999998 788888999999999999987554 3699999
Q ss_pred CCCcEEEEeCCCCceEEE-----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc---------------cccc
Q 045370 85 LDATCKVWDLGSGILIQT-----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL---------------EDHF 144 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~ 144 (350)
.|.++++|.++.+..... .+|...|.++...++|..+++|+.|.+|.+|+..+... ....
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999987764433 37999999999999999999999999999999432211 0111
Q ss_pred ccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 145 IVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
.....++..+.+|..+|.++.|++.. +++++.|.+|+.||+.++..+.++.. ..++.++.++|...+|++|+.+ +.+
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd-r~i 324 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD-RHI 324 (423)
T ss_pred ccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC-Cce
Confidence 22345666889999999999999988 99999999999999999999988874 5789999999999999977665 344
Q ss_pred ccc
Q 045370 224 KKD 226 (350)
Q Consensus 224 ~~~ 226 (350)
++|
T Consensus 325 rl~ 327 (423)
T KOG0313|consen 325 RLW 327 (423)
T ss_pred eec
Confidence 444
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=6.5e-23 Score=164.85 Aligned_cols=181 Identities=17% Similarity=0.293 Sum_probs=156.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++.+|+.++++||+.|....+|++. .+.....+.+|.+.|+++.|+. ++.+|
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~---------------------------~ge~~~eltgHKDSVt~~~Fsh-dgtlL 121 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDIS---------------------------TGEFAGELTGHKDSVTCCSFSH-DGTLL 121 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEcc---------------------------CCcceeEecCCCCceEEEEEcc-CceEE
Confidence 4678999999999999999999998 5667888899999999999976 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
|||+-+|.|+||+..++.....+. .-..+.-+.|||.+..|++|+.||.+.+|.+.+. .....+.+|..
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNS 191 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc----------ceeeEecCCCC
Confidence 999999999999999998888765 5567899999999999999999999999999853 34447889999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc-CCCceeEEEEEccCCeEEeeecC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
++++=.|.|+| ++++..||+|++||+.+++++..+.. ......++.++..+..++.|+.+
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 99999999999 99999999999999999999998862 23456666776666666655544
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.1e-22 Score=157.14 Aligned_cols=211 Identities=20% Similarity=0.207 Sum_probs=160.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc------------------cccccccEEEeeccccccceeeecc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH------------------SDQLDQRLIEMELRSLRSLLHYSLE 62 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (350)
|.|+++|.+|++++.|.++++||..++.......... +...+..+.-+. -...+.++.+.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs-l~dNkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS-LHDNKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE-eecCceEEEcCC
Confidence 5799999999999999999999998754433222111 111122222222 224678899999
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED 142 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 142 (350)
|...|.++..+|.+ +.+++++.|++|++||++..++...+.... -..++|+|.|-++|++...+.|++||++....
T Consensus 99 H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-- 174 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDK-- 174 (311)
T ss_pred CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCC--
Confidence 99999999998755 789999999999999999888777665433 34678999999999999888999999997532
Q ss_pred ccccccccceeee---ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce---eEEEEEccCCeEE
Q 045370 143 HFIVGEDQHSVLK---GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV---TNLVVIRQSSLLS 214 (350)
Q Consensus 143 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v---~~l~~~~~~~~l~ 214 (350)
.+...+. +.....+.|.|+|+| ++.+...+.+++.|.-+|..+.++..+...- .+.+|.||+++++
T Consensus 175 ------gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 175 ------GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred ------CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 2222222 346788999999999 7888888999999999999999887654432 5778999999999
Q ss_pred eeecCccc
Q 045370 215 EVSNCQRK 222 (350)
Q Consensus 215 ~~~~~~~~ 222 (350)
+|+.|+++
T Consensus 249 ~gs~dg~i 256 (311)
T KOG1446|consen 249 SGSDDGTI 256 (311)
T ss_pred EecCCCcE
Confidence 77777543
No 77
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.1e-24 Score=161.11 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=153.9
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEEEEEe
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFFVSSS 84 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~ 84 (350)
-|.+|||++.|++|+|+.+++. ....++..+.+|.++|+-++|.+| -|.+|++++
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n------------------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNN------------------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hcceeeeecCCccEEEEEEcCC------------------------CCceeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence 5889999999999999999831 123677889999999999999764 478999999
Q ss_pred CCCcEEEEeCCCCceEEE---EecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 85 LDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+||.|.||...+++.... ..|...|++++|.|. |-.|++++.||.|.+.+.+.... .........|.-
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEI 150 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhcccc
Confidence 999999999998855444 248889999999995 56889999999999999885411 112225668999
Q ss_pred ceEEEEecCC---e-------------EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccC----CeEEeee
Q 045370 160 SITALAFSAS---H-------------LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQS----SLLSEVS 217 (350)
Q Consensus 160 ~i~~~~~~~~---~-------------l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~----~~l~~~~ 217 (350)
.|+++.|.|. | |++|+.|..|+||+..+++ .-.++.+|...|+.++|.|.- ..+++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 9999999886 2 9999999999999998753 344578999999999999974 5788888
Q ss_pred cCcccccc
Q 045370 218 NCQRKLKK 225 (350)
Q Consensus 218 ~~~~~~~~ 225 (350)
.|++++.+
T Consensus 231 qDg~viIw 238 (299)
T KOG1332|consen 231 QDGTVIIW 238 (299)
T ss_pred CCCcEEEE
Confidence 88766544
No 78
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.8e-23 Score=163.70 Aligned_cols=194 Identities=24% Similarity=0.305 Sum_probs=153.2
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
.|+|+++|+.||.|.|||+++....... -+.... ..........+|.-.|.++.|.|-+...|.+++.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s-----------~li~k~-~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEAS-----------GLIAKH-KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhc-----------cceehe-eeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 5899999999999999999842210000 000000 0000112336788999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEecCCceeEEEEcCC---CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370 86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPG---EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (350)
|.+++|||.++-+....+..++.|.+-+++|- ..++++|..|-.|++.|+.++.+.. .+.+|.+.|.
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH----------~LsGHr~~vl 192 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH----------TLSGHRDGVL 192 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee----------eeccccCceE
Confidence 99999999999999999999999999999994 3478888899999999999765543 8889999999
Q ss_pred EEEecCCe---EEEEeCCCcEEEEECCCc-eEEEEe--------------ccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 163 ALAFSASH---LISASEDKTVCLWDVTRR-VSIRRF--------------NHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 163 ~~~~~~~~---l~s~~~dg~v~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
++.|+|.. |++|+.||.|++||++.- .+...+ ..|.+.|.+++|..++.++++++.+.+
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 99999987 999999999999999863 222222 347788999999999999998877753
No 79
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.2e-23 Score=170.63 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=158.2
Q ss_pred CCCEEEEEeCCCcEEEEeCcccccccc-ccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTS-ELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
-|+|+|.|..|..|.|||+.=-....+ ...+ ....-.....+..-....+|++.|.+++|+....+.|++||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG-------s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG-------SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeec-------hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC
Confidence 368999999999999999871000000 0000 00000000001111223579999999999887889999999
Q ss_pred CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370 85 LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (350)
.|.+|++||+.++++..++. |...|.++.|+|. ...|++|+.|++|.+.|.+...... ..-...+.|-
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----------~~wk~~g~VE 333 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----------KEWKFDGEVE 333 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------ceEEeccceE
Confidence 99999999999999999987 7889999999995 5689999999999999999421111 1112346788
Q ss_pred EEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccc
Q 045370 163 ALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLE 232 (350)
Q Consensus 163 ~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 232 (350)
.++|.|.. ++++..||+|+-+|+|+ ++++.++.+|.++|+++++++....+++..+.++.+++|.+....
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 89998876 88999999999999998 489999999999999999999988777677777888888665443
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=5.1e-23 Score=179.57 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=159.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccc----eeeeccccCCceEEEEeeCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL----LHYSLEHKSSVTGLLTISGG 76 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~ 76 (350)
|+.+||+..++|||.|.+|++||..-. .. .+....+. ......-.+.|.|+.++| +
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~------------------~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-d 519 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLV------------------VS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSP-D 519 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEE------------------ec-cCcccceeeeeccceEEeccccEEEEEEcC-C
Confidence 467899999999999999999998721 11 00001111 112234568899999855 8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
+.+++.+--|.+|+||-+++-+...+ ++|.-||.|+..+||++.+++|+.|.+|++|-+..+.+ ...+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC----------HKS~f 589 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC----------HKSFF 589 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----------hhhhh
Confidence 89999999999999999999876665 68999999999999999999999999999999995544 44888
Q ss_pred ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+|...|+++.|.|.. +++++.|+.|+-||-.....+..+.+|...|++++.+|+|.++++++.|
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 999999999999987 9999999999999999999999999999999999999999999987775
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.9e-23 Score=168.60 Aligned_cols=191 Identities=16% Similarity=0.228 Sum_probs=160.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS 83 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 83 (350)
.|....++||+.|.++.++|.. ....+..+.+|...|+.+.+++ +...++++
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~---------------------------s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~a 279 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKP---------------------------SNQILATLKGHTKKITSVKFHK-DLDTVITA 279 (506)
T ss_pred cCCCCcceecCCCCceEEEecc---------------------------hhhhhhhccCcceEEEEEEecc-chhheeec
Confidence 3444789999999999999998 6788899999999999999966 56778999
Q ss_pred eCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370 84 SLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162 (350)
Q Consensus 84 ~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (350)
+.|..|++|.......... ..|..+|+.+..+|.|.||++++.||...+.|++++...... .-....-.++
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v--------s~~~s~v~~t 351 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV--------SDETSDVEYT 351 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE--------eeccccceeE
Confidence 9999999999887665444 569999999999999999999999999999999965433210 1112334689
Q ss_pred EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370 163 ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL 231 (350)
Q Consensus 163 ~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (350)
+.+|+||| |.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|-+|+++++|+. +.+|+++.+
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl 421 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKL 421 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhh
Confidence 99999999 889999999999999999999999999999999999999999998888864 555555443
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=3.2e-22 Score=174.65 Aligned_cols=213 Identities=22% Similarity=0.282 Sum_probs=162.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc-----cccc---------cccEEEeeccccccceeeeccccCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH-----SDQL---------DQRLIEMELRSLRSLLHYSLEHKSS 66 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~~ 66 (350)
++||.|...++||+ .+.|+||+..+..+.....+.. .-+. .+.+-.++.. ....+....+|.+.
T Consensus 379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Eti~AHdga 456 (888)
T KOG0306|consen 379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVETIRAHDGA 456 (888)
T ss_pred EEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhhhhccccc
Confidence 47888887787775 4789999988655433222211 0011 1222212111 23445566799999
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCC-----Cce---E-----EEEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGS-----GIL---I-----QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS 133 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----~~~---~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 133 (350)
|++++..| ++..+++||.|.+|++||..- |.. + ..+..+..|.|+.++|||++++++--|.+|++|
T Consensus 457 IWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 99999866 677899999999999999641 111 1 224567889999999999999999999999999
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS 211 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 211 (350)
-+.+.+. ...+.||.-||.||..+|+. ++|||.|.+|+||-+.-|.+-+.+.+|...|.++.|.|...
T Consensus 536 flDtlKF----------flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 536 FLDTLKF----------FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred Eecceee----------eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 9985443 33788999999999999999 99999999999999999999999999999999999999988
Q ss_pred eEEeeecCcccccccc
Q 045370 212 LLSEVSNCQRKLKKDR 227 (350)
Q Consensus 212 ~l~~~~~~~~~~~~~~ 227 (350)
++.+++.|+ .++.|+
T Consensus 606 ~FFt~gKD~-kvKqWD 620 (888)
T KOG0306|consen 606 LFFTCGKDG-KVKQWD 620 (888)
T ss_pred eEEEecCcc-eEEeec
Confidence 888777664 333443
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=168.05 Aligned_cols=187 Identities=24% Similarity=0.348 Sum_probs=160.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++.|+||+|||+|+.|..|.||+.+ +...+..+.+|.+.|.+++|-. +.+.+
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~---------------------------t~ehv~~~~ghr~~V~~L~fr~-gt~~l 259 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCD---------------------------TLEHVKVFKGHRGAVSSLAFRK-GTSEL 259 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCc---------------------------ccchhhcccccccceeeeeeec-Cccce
Confidence 5789999999999999999999999 5777788999999999999954 66779
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++++.|++|++|+++....+.+ +.|++.|..+....-++.+.+|+.|+++++|++.. +....+.+|.+
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----------esqlifrg~~~ 328 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----------ESQLIFRGGEG 328 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-----------cceeeeeCCCC
Confidence 9999999999999998777766 78999999999988899999999999999999852 22336778899
Q ss_pred ceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec-cC-----------CCceeEEEEEccCCeEEeeecCc--cccc
Q 045370 160 SITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN-HK-----------KGVVTNLVVIRQSSLLSEVSNCQ--RKLK 224 (350)
Q Consensus 160 ~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-~~-----------~~~v~~l~~~~~~~~l~~~~~~~--~~~~ 224 (350)
.+-|++|-.+. +++|+.||.|.+|++.+.+++.+.. +| ...|++|+..|...++++|+.++ ++|.
T Consensus 329 sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 329 SIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred CeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 99999998887 9999999999999999988887763 22 12789999999999999888664 4554
Q ss_pred cc
Q 045370 225 KD 226 (350)
Q Consensus 225 ~~ 226 (350)
+.
T Consensus 409 i~ 410 (479)
T KOG0299|consen 409 IE 410 (479)
T ss_pred ec
Confidence 43
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2e-22 Score=158.79 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=154.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|+|.++.|+.++.||.+++||+.. ..+.....|..++.+++|.. ...+
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~----------------------------~~l~~~~~~~~plL~c~F~d--~~~~ 68 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPA----------------------------NSLKLKFKHGAPLLDCAFAD--ESTI 68 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccc----------------------------hhhhhheecCCceeeeeccC--CceE
Confidence 56899999999999999999999982 23444567999999999965 3568
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH----------------- 143 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------- 143 (350)
++|+.||.|+.+|+.++.......|..++.|+.+.+....+++|+.|+.|++||.+.......
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~L 148 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRL 148 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEE
Confidence 999999999999999999888889999999999999888999999999999999883110000
Q ss_pred ------------------------------------------------------------cccccccceeeeccC-----
Q 045370 144 ------------------------------------------------------------FIVGEDQHSVLKGHN----- 158 (350)
Q Consensus 144 ------------------------------------------------------------~~~~~~~~~~~~~~~----- 158 (350)
..........++.|.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~ 228 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD 228 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence 000001122455554
Q ss_pred ----CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 159 ----GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 159 ----~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
-+|++|+|+|-. |+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++..
T Consensus 229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 379999999986 9999999999999999999999998777889999999999999988764
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=161.18 Aligned_cols=178 Identities=25% Similarity=0.343 Sum_probs=158.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS 83 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 83 (350)
.|+|-+|++++.||.-.+-+-+ ++..+.++.+|.+.|++..... +....+++
T Consensus 26 tp~g~flisa~kd~~pmlr~g~---------------------------tgdwigtfeghkgavw~~~l~~-na~~aasa 77 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGD---------------------------TGDWIGTFEGHKGAVWSATLNK-NATRAASA 77 (334)
T ss_pred CCCceEEEEeccCCCchhccCC---------------------------CCCcEEeeeccCcceeeeecCc-hhhhhhhh
Confidence 3689999999999988877666 6788999999999999988754 55668899
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 84 SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 84 ~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
+.|-+-++||.-+|..++++.|..-|.+++|+.|.++|++|+.+..+++||++.. ..+...+.+|.+.|..
T Consensus 78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---------~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---------KAPPKEISGHTGGIRT 148 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCC---------CCCchhhcCCCCccee
Confidence 9999999999999999999999999999999999999999999999999999853 3444578899999999
Q ss_pred EEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 164 LAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 164 ~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+.|.... +++++.|++||+||.+++..+.++. ...+|+++.++++|++|..+.+.
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCc
Confidence 9998655 8888999999999999999999998 57889999999999999877655
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.4e-24 Score=183.34 Aligned_cols=181 Identities=23% Similarity=0.322 Sum_probs=163.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|+++..+|++|+.+|+|++||++ ....++++.+|...+..+.|+| -+.++
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDle---------------------------eAk~vrtLtgh~~~~~sv~f~P-~~~~~ 127 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLE---------------------------EAKIVRTLTGHLLNITSVDFHP-YGEFF 127 (825)
T ss_pred eecCcchhhhcccccCCceeeeehh---------------------------hhhhhhhhhccccCcceeeecc-ceEEe
Confidence 4688899999999999999999999 5777889999999999999866 67888
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.|+.+++||++...+.+.+. |...+.++.|+|+|++++.|+.|..+++||+..+++ ...|..|.+
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~----------~~ef~~~e~ 197 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL----------SKEFKSHEG 197 (825)
T ss_pred ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc----------ccccccccc
Confidence 999999999999999888888765 888899999999999999999999999999985543 347889999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+..+.|+|.. +++|+.|++|++||+++.+.+.........|.++.|+|++..+++|...
T Consensus 198 ~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 198 KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999988 9999999999999999999999888788899999999999999877654
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-21 Score=146.14 Aligned_cols=206 Identities=22% Similarity=0.252 Sum_probs=158.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccc----cccccc----------------------cccccccEEEeeccccc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT----SELMHH----------------------SDQLDQRLIEMELRSLR 54 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~----------------------~~~~~~~~~~~~~~~~~ 54 (350)
.+|||+|+++++|+.|.+|++.-++...+.. .++.-+ .+..+..++..+.. .+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g 173 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RG 173 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CC
Confidence 3799999999999999999998665321110 011111 11223445544433 24
Q ss_pred cceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCceeEEEEcCCCcEEEEEcc
Q 045370 55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--------YPQAVTAIAFHPGEQLLFAGSI 126 (350)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~ 126 (350)
..+..+.+|++.|.++--+ ++-.+++|+.|.+|++||++-..++..+. ....|.+++++|.|++|++|-.
T Consensus 174 ~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred CcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 5567788999999988433 56889999999999999999888887754 2357999999999999999999
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc----eEEEEeccCCCc
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR----VSIRRFNHKKGV 200 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~ 200 (350)
|....+||++ ....+..+..|...|.|+.|+|.. +++++.|..|++-|+... -++.....|...
T Consensus 252 dssc~lydir----------g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 252 DSSCMLYDIR----------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred CCceEEEEee----------CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 9999999999 556666899999999999999987 999999999999998641 223344568888
Q ss_pred eeEEEEEccCCeEEeeecC
Q 045370 201 VTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 201 v~~l~~~~~~~~l~~~~~~ 219 (350)
+..+.|+|..--+++.+.|
T Consensus 322 ~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred eEEEEecCccceeeeccCc
Confidence 8889999998777755554
No 88
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=162.65 Aligned_cols=206 Identities=19% Similarity=0.236 Sum_probs=158.6
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
+..+.++-+..|.|.||++........... +. .......++.++.+|...-.+++|+|.....+++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~----------~~-~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPG----------LE-VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCcc----------cc-ccccccCceEEecccCccceeeecccccccccccCcc
Confidence 345677888899999999974211110000 00 0012456778889999999999998866566889988
Q ss_pred CCcEEEEeCCCCceEEE----EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 86 DATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
-+.|++|...+|..... ..|...|..++|+|.. ..|++|+.||+|+|||++.+. .+.....+.|.+.
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--------~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--------KKAAVSTKAHNSD 304 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--------ccceeEeeccCCc
Confidence 89999999998765443 4589999999999965 588999999999999999752 2233345789999
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCC---ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTR---RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS 230 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (350)
|+.|.|+... |++|+.||+++|||++. ++++..+..|..+|+++.|+|...-++.+++.+..+.+|+++-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999877 99999999999999986 6789999999999999999998765555666666666665543
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=178.13 Aligned_cols=189 Identities=25% Similarity=0.269 Sum_probs=166.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee---ccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS---LEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~ 77 (350)
++.|+-|++.+.|...|+|-+|+++. +.....+ ..|..+|++++... -+
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQS---------------------------Gi~r~sf~~~~ah~~~V~gla~D~-~n 505 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQS---------------------------GIHRKSFGDSPAHKGEVTGLAVDG-TN 505 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEccc---------------------------CeeecccccCccccCceeEEEecC-CC
Confidence 46788999999999999999999993 3333333 68999999999855 45
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
..+++++.+|.+++||..+...+..+.....+.++.++.....++.+..|-.|.++|.. ....++.+.+|
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~----------t~kvvR~f~gh 575 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV----------TRKVVREFWGH 575 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch----------hhhhhHHhhcc
Confidence 77999999999999999999988889889999999999999999999999999999998 45566689999
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
.+.|++++|||+| |++++.|++|++||+.++.++-.+. -..+.+++.|+|+|.+||++..+..-+.+|.-
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999 9999999999999999999998876 56789999999999999999988766666643
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=4.9e-22 Score=177.06 Aligned_cols=182 Identities=29% Similarity=0.411 Sum_probs=157.1
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+|..-+.+|++|+.|.+++|||.. .+.+...+.+|...|.++.. .+..++
T Consensus 256 ~~~~~~~~lvsgS~D~t~rvWd~~---------------------------sg~C~~~l~gh~stv~~~~~---~~~~~~ 305 (537)
T KOG0274|consen 256 AFPSGGDKLVSGSTDKTERVWDCS---------------------------TGECTHSLQGHTSSVRCLTI---DPFLLV 305 (537)
T ss_pred EEecCCCEEEEEecCCcEEeEecC---------------------------CCcEEEEecCCCceEEEEEc---cCceEe
Confidence 344457899999999999999988 68899999999999999976 446688
Q ss_pred EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
+|+.|.+|++|++.++..+..+. |.++|+++..+ +.++++|+.||.|.+||+.+ .+.+..+.+|...
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~----------~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT----------GKCLKSLSGHTGR 373 (537)
T ss_pred eccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh----------ceeeeeecCCcce
Confidence 89999999999999999999988 99999999996 89999999999999999994 5556689999999
Q ss_pred eEEEEecC-CeEEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 161 ITALAFSA-SHLISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 161 i~~~~~~~-~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
|+++.+.+ +.+++|+.|+.|++||+++. +++..+.+|.+.+.++.+ .+++|++++.|+ .+++|+.
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~-~Ik~WD~ 440 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG-TIKLWDA 440 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc-cEEEeec
Confidence 99999999 66999999999999999999 999999999888855444 577888777665 4444433
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=9.7e-22 Score=178.33 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=164.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|||||++||+||+|+.|.||.... . ......+.++. . .....-+.+..+.+|...|..++|.| ++.++
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~-~-~~~~~fgs~g~----~---~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~l 144 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAE-I-GSGTVFGSTGG----A---KNVESWKVVSILRGHDSDVLDVNWSP-DDSLL 144 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecc-c-CCccccccccc----c---cccceeeEEEEEecCCCccceeccCC-CccEE
Confidence 46999999999999999999999873 1 11101100000 0 00112345667789999999999977 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc-------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV------------- 146 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------- 146 (350)
++++.|++|.+|+..+...+..+ .|...|..+.|+|-|++|++-+.|++|++|....+........
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 99999999999999999877775 5999999999999999999999999999999765442211000
Q ss_pred -----------------------------ccccceeeeccCCceEEEEecCC-------------------eEEEEeCCC
Q 045370 147 -----------------------------GEDQHSVLKGHNGSITALAFSAS-------------------HLISASEDK 178 (350)
Q Consensus 147 -----------------------------~~~~~~~~~~~~~~i~~~~~~~~-------------------~l~s~~~dg 178 (350)
.-+.-..+-||.+++.+++|+|. -+|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 00111256789999999999862 178999999
Q ss_pred cEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 179 TVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 179 ~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
+|.||.....+++..+. -...+|..++|+|||..|+++|.|+.+..+.
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred cEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 99999998888776654 3466899999999999999899987766554
No 92
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=3.1e-22 Score=161.69 Aligned_cols=189 Identities=22% Similarity=0.285 Sum_probs=146.8
Q ss_pred CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|||-- ..|+||.--+.|++|...++. -..-...+.+|+..|-.+.|+|.....
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~------------------------W~vd~~Pf~gH~~SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGS------------------------WKVDQRPFTGHTKSVEDLQWSPTEDGV 272 (440)
T ss_pred eecccccccccccCccccceEeeeeccCc------------------------eeecCccccccccchhhhccCCccCce
Confidence 5788832 357888888899999877310 011123356799999999999988999
Q ss_pred EEEEeCCCcEEEEeCCCC---ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 80 FVSSSLDATCKVWDLGSG---ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
|++||.||+|+|||++.+ .++..-.|.+.|+.|.|+....+|++|+.||.+.|||++..+ ...++..++.
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-------~~~pVA~fk~ 345 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-------SGQPVATFKY 345 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-------CCCcceeEEe
Confidence 999999999999999988 455556799999999999988899999999999999999765 3467789999
Q ss_pred cCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE--------E--------EEeccCC--CceeEEEEEccCC-eEE
Q 045370 157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRVS--------I--------RRFNHKK--GVVTNLVVIRQSS-LLS 214 (350)
Q Consensus 157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~--------~--------~~~~~~~--~~v~~l~~~~~~~-~l~ 214 (350)
|..+|+++.|+|.. |++++.|..|.+||+..-.- . .-+..|. ..+..|.|+++-. +++
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 99999999999976 99999999999999853111 1 1112243 3578888998754 555
Q ss_pred eeecCc
Q 045370 215 EVSNCQ 220 (350)
Q Consensus 215 ~~~~~~ 220 (350)
+++.++
T Consensus 426 sTa~dG 431 (440)
T KOG0302|consen 426 STAIDG 431 (440)
T ss_pred Eecccc
Confidence 555554
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=4.4e-22 Score=180.55 Aligned_cols=244 Identities=17% Similarity=0.243 Sum_probs=179.7
Q ss_pred CeecCCCCEEEEEe--CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 1 MVFSDDGFLLISGS--DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
|+.+|||..++||+ .||.++||+.+......... .......+.....|.+.|.|+.|++ ++.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~---------------~~~l~k~l~~m~~h~~sv~CVR~S~-dG~ 82 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK---------------NENLPKHLCTMDDHDGSVNCVRFSP-DGS 82 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhh---------------hcccchhheeeccccCceeEEEECC-CCC
Confidence 46799999999999 89999999988322111100 0113556777889999999999955 889
Q ss_pred EEEEEeCCCcEEEEeCCC-------C-----------ceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 79 FFVSSSLDATCKVWDLGS-------G-----------ILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~-------~-----------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
+||+|++|+.|.+|+... | ++... ..|+..|..++|+|++.++++++.|++|.+|+.+++
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF- 161 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF- 161 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-
Confidence 999999999999999872 1 12222 358999999999999999999999999999999964
Q ss_pred cccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC------CCceeEEEEEccCC
Q 045370 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK------KGVVTNLVVIRQSS 211 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~ 211 (350)
+....+.+|.+.|..+.|.|-| |++-+.|++|+||++.+....+.+..+ ...+..+.|||||+
T Consensus 162 ---------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 162 ---------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred ---------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 4455889999999999999999 999999999999999888888877543 23588999999999
Q ss_pred eEEeeecC------c-----cccccc-cCCccccCCCCcccccc-------------c-eEEeeccccCCCCcccccccc
Q 045370 212 LLSEVSNC------Q-----RKLKKD-RMPSLEKYPQLNSLSME-------------M-VILLQSCFFNKDDQCSINIRR 265 (350)
Q Consensus 212 ~l~~~~~~------~-----~~~~~~-~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~v~~~~ 265 (350)
+|++..+- . ..|... ++-.....+.+..+.+. . ...+....++.|+.++||.+.
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 99976542 1 122211 11111222222222111 1 233445568889999999887
Q ss_pred cchhh
Q 045370 266 TKSLF 270 (350)
Q Consensus 266 ~~~~~ 270 (350)
....+
T Consensus 313 ~~RPl 317 (942)
T KOG0973|consen 313 LPRPL 317 (942)
T ss_pred CCCch
Confidence 76643
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1e-21 Score=149.27 Aligned_cols=180 Identities=22% Similarity=0.287 Sum_probs=139.4
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+.+.|...|++|+.|..|.+||++ +++..+.+.+|.+.|+.+.|+. +...++
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~---------------------------TGkv~Rr~rgH~aqVNtV~fNe-esSVv~ 117 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVN---------------------------TGKVDRRFRGHLAQVNTVRFNE-ESSVVA 117 (307)
T ss_pred cccccccccccCCCCceEEEEEcc---------------------------cCeeeeecccccceeeEEEecC-cceEEE
Confidence 456788899999999999999999 6889999999999999999955 678899
Q ss_pred EEeCCCcEEEEeCCCCc--eEEEEe---------------------------------------cCCceeEEEEcCCCcE
Q 045370 82 SSSLDATCKVWDLGSGI--LIQTQV---------------------------------------YPQAVTAIAFHPGEQL 120 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~--~~~~~~---------------------------------------~~~~v~~~~~~~~~~~ 120 (350)
+|+.|.++++||.++.. +++.+. ...+|++++|+++++.
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc 197 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC 197 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence 99999999999987542 222211 1246777777777777
Q ss_pred EEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE--ecCCe--EEEEeCCCcEEEEECCCceEEEEecc
Q 045370 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA--FSASH--LISASEDKTVCLWDVTRRVSIRRFNH 196 (350)
Q Consensus 121 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~ 196 (350)
.++++.|+++++.|-.+++. +...++|...-..+. ++... +++|++||.|++||+.....+..+..
T Consensus 198 ~La~~l~stlrLlDk~tGkl----------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETGKL----------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred EEEeeccceeeecccchhHH----------HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 77777777777777765443 336677776554443 33333 99999999999999999999999998
Q ss_pred CCCc-eeEEEEEccCCeEEeeecC
Q 045370 197 KKGV-VTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 197 ~~~~-v~~l~~~~~~~~l~~~~~~ 219 (350)
+... +.+++++|.-..|+++...
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred CCceeEEeeecccCccceeEecCC
Confidence 8777 8999999997655555443
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=4e-21 Score=171.29 Aligned_cols=183 Identities=26% Similarity=0.337 Sum_probs=157.5
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCcEEEEEeC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
+.++++++.|++|++||.. ....+.. +.+|.+.|+++++.. .+.++++|+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~---------------------------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~ 269 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLN---------------------------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGST 269 (537)
T ss_pred cCeEEecCCCceeEEeecc---------------------------cceEEEeeccCCCCCceeEEEec-CCCEEEEEec
Confidence 5688999999999999998 4555555 899999999999965 6788999999
Q ss_pred CCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370 86 DATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
|.++++||+.+|.+...+. |...+.++.. ....+++|+.|.+|++|++.++ ..+..+.+|.++|+++
T Consensus 270 D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc----------ceEEEeccccccEEEE
Confidence 9999999999999999976 8888988887 4568888999999999999954 4444777799999999
Q ss_pred EecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370 165 AFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL 231 (350)
Q Consensus 165 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (350)
..+.+.+++|+.|++|++||+.++++++.+.+|.+.|.++.+.+. ..+++|+-| ..++.|++...
T Consensus 338 ~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~~IkvWdl~~~ 402 (537)
T KOG0274|consen 338 QLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-TTIKVWDLRTK 402 (537)
T ss_pred EecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-cceEeecCCch
Confidence 999666999999999999999999999999999999999988776 788878877 55556655544
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=152.08 Aligned_cols=255 Identities=20% Similarity=0.244 Sum_probs=166.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc----------cccccc-----------E--EEeecccccc--
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS----------DQLDQR-----------L--IEMELRSLRS-- 55 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~~-----------~--~~~~~~~~~~-- 55 (350)
|+||.||++|||++.|++|+||++.............. ...+.+ + +.+.....+.
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 68999999999999999999999986333221111110 011111 1 1111110010
Q ss_pred -------ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccC
Q 045370 56 -------LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID 127 (350)
Q Consensus 56 -------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 127 (350)
.......|.-.+..+-. ..++.++++++.|..|.+|++. |+.+..+. ....-+..+++|+|+++++++--
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred cccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 01122345555555543 4467899999999999999999 88888765 34456788999999999999999
Q ss_pred CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-------eEEEEe----
Q 045370 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR-------VSIRRF---- 194 (350)
Q Consensus 128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-------~~~~~~---- 194 (350)
-.|++|.+-..+-... .....+..+.+|...|..++|+|+. +++.+.||+++|||+.-. +.+++.
T Consensus 250 pDVkVwE~~f~kdG~f--qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl 327 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTF--QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL 327 (420)
T ss_pred CCceEEEEEeccCcch--hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcch
Confidence 9999999864332211 1234556889999999999999998 999999999999998532 222222
Q ss_pred ccCCCceeEEEEEccCCeEEeeecCc-cccccccC---Ccc----ccCCCCccccccceEEeeccccCCCCcccccc
Q 045370 195 NHKKGVVTNLVVIRQSSLLSEVSNCQ-RKLKKDRM---PSL----EKYPQLNSLSMEMVILLQSCFFNKDDQCSINI 263 (350)
Q Consensus 195 ~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (350)
....+....+.++|+|+.|+.+.+.. ..+...+. +.+ ...+.+.+++.+++.+.... +..+.+..
T Consensus 328 ~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG----dr~vrv~~ 400 (420)
T KOG2096|consen 328 HAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG----DRYVRVIR 400 (420)
T ss_pred hhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec----ceeeeeec
Confidence 11223344899999999998776643 33333322 222 33466778888887655332 55555444
No 97
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-20 Score=148.28 Aligned_cols=201 Identities=18% Similarity=0.172 Sum_probs=149.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~ 79 (350)
+.|++-|+++|||+.|++|+|||... ....-.+......|.+.|..+.|.+|+ |..
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~-----------------------~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTS-----------------------DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccC-----------------------CCCceEEeeeEEecCCcEEEEEecCccccce
Confidence 46889999999999999999999752 112334566778999999999998765 688
Q ss_pred EEEEeCCCcEEEEeCCCC-------ceEE--E-EecCCceeEEEEcC--CCcEEEEEccCCeEEEEeCCccccccc----
Q 045370 80 FVSSSLDATCKVWDLGSG-------ILIQ--T-QVYPQAVTAIAFHP--GEQLLFAGSIDGRIFVSPLKFLLLEDH---- 143 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~-------~~~~--~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~---- 143 (350)
+|+++.|+++.||.-... +.+. + ......|+.++|.| -|-.+++++.||.++||+.........
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 999999999999986321 1111 1 23567899999999 467899999999999998643210000
Q ss_pred -------------------------------ccc----------------------ccccceeeeccCCceEEEEecCCe
Q 045370 144 -------------------------------FIV----------------------GEDQHSVLKGHNGSITALAFSASH 170 (350)
Q Consensus 144 -------------------------------~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~ 170 (350)
+.. .-..+..+.+|+.+|++++|.|+-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 000 001222566889999999999974
Q ss_pred ------EEEEeCCCcEEEEECCCc--------------------eEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370 171 ------LISASEDKTVCLWDVTRR--------------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK 224 (350)
Q Consensus 171 ------l~s~~~dg~v~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~ 224 (350)
||+++.|| |+||.+... +.+..+..|.+.|..+.|+-.|..|++++.|+ .++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG-~VR 313 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG-CVR 313 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc-eee
Confidence 99999999 999998731 23556678999999999999999999666554 444
Q ss_pred cc
Q 045370 225 KD 226 (350)
Q Consensus 225 ~~ 226 (350)
+|
T Consensus 314 LW 315 (361)
T KOG2445|consen 314 LW 315 (361)
T ss_pred eh
Confidence 44
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=9.4e-22 Score=160.60 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=154.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|.+++.++++++.|+.+++|++. ......++.+|++.|+++.|.... ..+
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd---------------------------~~r~~~TLsGHtdkVt~ak~~~~~-~~v 276 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVD---------------------------SLRLRHTLSGHTDKVTAAKFKLSH-SRV 276 (459)
T ss_pred eeecCCCceEEeecCCCceeeeecc---------------------------chhhhhhhcccccceeeehhhccc-cce
Confidence 5789999999999999999999999 577788899999999999986533 449
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++|+.|.+|++||+....+..+.-....+..|+.. ...+++|-.|+.|++||.+. .........+. .
T Consensus 277 Vsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs----------~~~~~sv~~gg-~ 343 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS----------ADKTRSVPLGG-R 343 (459)
T ss_pred eeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccC----------CceeeEeecCc-c
Confidence 99999999999999999888887667777778775 66888999999999999994 34444555554 9
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEeeecCcccc
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
|+++..++++ +.+++.|.++.+.|+++......+.+ .....+.++|||++.|+++||.++.+.
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 9999999999 88889999999999999988887753 223589999999999999888876554
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=154.07 Aligned_cols=217 Identities=19% Similarity=0.361 Sum_probs=167.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcc----cc--c-----cccccccccccc-cc-cEEEeeccccccceeeeccccCCc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTR----LL--K-----QTSELMHHSDQL-DQ-RLIEMELRSLRSLLHYSLEHKSSV 67 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~----~~--~-----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~h~~~v 67 (350)
|.|++.+.++++++.|++..||...- +. . ...+..+..... +. .-...+......++..+.+|...|
T Consensus 196 ikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV 275 (481)
T KOG0300|consen 196 IKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV 275 (481)
T ss_pred EEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence 57999999999999999999997431 11 0 000111110000 00 000111222345677789999999
Q ss_pred eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370 68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.+..|.. ++..++++++|.+-.+||++++.++..+ +|....+.++-+|..+++++.+.|.+.++||++.
T Consensus 276 ~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--------- 345 (481)
T KOG0300|consen 276 SACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--------- 345 (481)
T ss_pred Eehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh---------
Confidence 9999977 6788999999999999999999999885 5889999999999999999999999999999993
Q ss_pred ccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370 147 GEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK 224 (350)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~ 224 (350)
....+..|.+|...|+++.|..+. +++|+.|.+|++||+++. .++.++. ..+++..++.+..+++++ --.|.+.++
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA-iPhDNRqvR 423 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA-IPHDNRQVR 423 (481)
T ss_pred hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE-eccCCceEE
Confidence 345556899999999999999888 999999999999999984 4677776 578899999998888887 555666666
Q ss_pred cccCC
Q 045370 225 KDRMP 229 (350)
Q Consensus 225 ~~~~~ 229 (350)
+.++.
T Consensus 424 lfDln 428 (481)
T KOG0300|consen 424 LFDLN 428 (481)
T ss_pred EEecC
Confidence 65443
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-22 Score=173.27 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=149.8
Q ss_pred CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|++-. .+|+|||.||+|++||++ ...-..++.+..+.|.++.|+|..+..
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR---------------------------~~~S~~t~~~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLR---------------------------SKKSKSTFRSNSESIRDVKFSPGYGNK 191 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeee---------------------------cccccccccccchhhhceeeccCCCce
Confidence 4566644 689999999999999999 456666777789999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCce-EEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 80 FVSSSLDATCKVWDLGSGIL-IQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
|+++...|.+++||++.... ... ..|.++|.|+.|+|++.+|++|+.|+.|+|||......... .++ ..
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~--------~tI-nT 262 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK--------HTI-NT 262 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce--------eEE-ee
Confidence 99999999999999997542 222 46999999999999999999999999999999985432211 111 23
Q ss_pred CCceEEEEecCCe---EEEEe--CCCcEEEEECCCce-EEEEeccCCCceeEEEEEcc-CCeEEeeecCcccc
Q 045370 158 NGSITALAFSASH---LISAS--EDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNCQRKL 223 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~--~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~~~~~ 223 (350)
..++.++.|-|.. |++++ .|-.|+|||++..- +..++..|...++.++|... ...+.+++.|+.+.
T Consensus 263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 4789999999987 88777 47899999998754 45677889999999999763 45666677765443
No 101
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7e-23 Score=177.99 Aligned_cols=186 Identities=23% Similarity=0.361 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
++.+++|+.|..+-+|.+. .......+.+|..+|.++.|.. ...++++|+.+
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~---------------------------kp~~i~S~~~hespIeSl~f~~-~E~Llaagsas 91 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIG---------------------------KPNAITSLTGHESPIESLTFDT-SERLLAAGSAS 91 (825)
T ss_pred ceeeccCCCceeecccccc---------------------------CCchhheeeccCCcceeeecCc-chhhhcccccC
Confidence 3556666666666666655 2334445789999999999966 55789999999
Q ss_pred CcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 87 ATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
|+|++||+..++.++. ..|...+.++.|+|-+.+++.|+.|+.+.+||.+. ..+...+.+|...+.++.
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------KGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------cCceeeecCCcceeEEEe
Confidence 9999999999988887 46889999999999999999999999999999994 344457788999999999
Q ss_pred ecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370 166 FSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL 231 (350)
Q Consensus 166 ~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (350)
|+|+| +++|++|..++|||+..|+.+..|..|.+.+.++.|+|..-+++.|+.+ +.+++|++..+
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d-~tv~f~dletf 228 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD-RTVRFWDLETF 228 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC-ceeeeecccee
Confidence 99999 8899999999999999999999999999999999999998888866554 55556655443
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=152.72 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=153.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cEEEEE
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TFFVSS 83 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~ 83 (350)
-+|.|+||||.|-+|+|||+. .......+..|.+.|+++.|.++-. ..|++|
T Consensus 51 Vs~~~~aSGssDetI~IYDm~---------------------------k~~qlg~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMR---------------------------KRKQLGILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred ecceeEeccCCCCcEEEEecc---------------------------chhhhcceeccccceEEEEecCCcchhheeee
Confidence 368999999999999999999 5677778889999999999987643 479999
Q ss_pred eCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------cccccc--
Q 045370 84 SLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-----------FIVGED-- 149 (350)
Q Consensus 84 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~-- 149 (350)
+.||.|.+|+.....++..+. |.+.|+.++.||.+++.++.+.|+.++.||+-.+..... +...+.
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF 183 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence 999999999999998888865 888899999999999999999999999999976652211 000010
Q ss_pred ------cceee----------eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE--EccC
Q 045370 150 ------QHSVL----------KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV--IRQS 210 (350)
Q Consensus 150 ------~~~~~----------~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~ 210 (350)
.+..+ -..+..+.|+.|-..+ |++|+.|+.|.+||..+..+...+.+|...|.++.+ .|++
T Consensus 184 ~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 184 VVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 00000 1122447777777666 999999999999999999999999999999999985 3667
Q ss_pred CeEEeeecCccc
Q 045370 211 SLLSEVSNCQRK 222 (350)
Q Consensus 211 ~~l~~~~~~~~~ 222 (350)
.+|+++++|+.+
T Consensus 264 ~~lvTaSSDG~I 275 (362)
T KOG0294|consen 264 EYLVTASSDGFI 275 (362)
T ss_pred eEEEEeccCceE
Confidence 899988888643
No 103
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=145.57 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=153.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+|+|++++.++.|..|...|.. .............+..++|+. .++++
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r----------------------------~~~~~~~~~~~~e~ne~~w~~-~nd~F 162 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDAR----------------------------TYKIVNEEQFKFEVNEISWNN-SNDLF 162 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEec----------------------------ccceeehhcccceeeeeeecC-CCCEE
Confidence 4799999999999999999999988 222333344566778888875 45555
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+.....|+|.|.....-+++..+. |+..+.||.|+|+|++|++|+.|-.+-+||+.. .-..+.+.-+.-
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----------LiC~R~isRldw 232 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----------LICERCISRLDW 232 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH----------hhhheeeccccC
Confidence 555557999999999888888864 999999999999999999999999999999983 445558888999
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+|..+.|+.+| ||+|++|..|-|=++.+|..+..++ +.++...++|+|...+||-++.+
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999999999 9999999999999999999999998 78999999999999999977765
No 104
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=155.07 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=157.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~ 79 (350)
|.||.|...||+|+.||.|+||.++ ++.+++.+ .+|+..|+|+.|+. ++..
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~---------------------------tG~ClRrFdrAHtkGvt~l~FSr-D~Sq 320 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIE---------------------------TGQCLRRFDRAHTKGVTCLSFSR-DNSQ 320 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEe---------------------------cchHHHHhhhhhccCeeEEEEcc-Ccch
Confidence 5799999999999999999999999 56666665 49999999999966 6677
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
+++++.|.++++.-+.+|+++..+ +|...|+.+.|.++|.++++++.||+|++|+..+.++...+... +..
T Consensus 321 iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~--------~~d 392 (508)
T KOG0275|consen 321 ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL--------GTD 392 (508)
T ss_pred hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC--------CCc
Confidence 999999999999999999999886 48899999999999999999999999999999977665433222 345
Q ss_pred CceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec---cCCCceeEEEEEccCCeEEeeecCccccc
Q 045370 159 GSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVIRQSSLLSEVSNCQRKLK 224 (350)
Q Consensus 159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~~~~~~~ 224 (350)
.+|+.+..-|.. ++++...++|+|.++. |+.++++. ...+...+.+.+|.|.++.+.+.|...+.
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYC 463 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYC 463 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEE
Confidence 678888877765 9999999999999986 78888885 23556778889999999998887765543
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=149.00 Aligned_cols=180 Identities=16% Similarity=0.243 Sum_probs=140.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+|....|++|+.|++|++||+... .-+..........+|.++.|+| .|.++
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~-------------------------saKrA~K~~qd~~~vrsiSfHP-sGefl 231 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKT-------------------------SAKRAFKVFQDTEPVRSISFHP-SGEFL 231 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccH-------------------------HHHHHHHHhhccceeeeEeecC-CCceE
Confidence 579999999999999999999999831 1122223345678999999966 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee-e
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL-K 155 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~ 155 (350)
+.|....++++||+++-++...- .|.+.|+++.+++.+++.++|+.||.|++||=-+..+.. .+ .
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~----------t~~~ 301 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR----------TIGN 301 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH----------HHHh
Confidence 99999999999999999887763 488899999999999999999999999999976443332 22 2
Q ss_pred ccC-CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC--C---ceeEEEEEccCCeEEee
Q 045370 156 GHN-GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK--G---VVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 156 ~~~-~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~l~~~~~~~~l~~~ 216 (350)
.|. ..|.+..|..++ +++.+.|..+++|.+.+++++.++.+.. + .-+...|+....+++.-
T Consensus 302 AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcc
Confidence 454 468888999998 9999999999999999999998886421 1 12333455555555533
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=157.17 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=158.9
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccc-------------cccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHH-------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS 74 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 74 (350)
..+++++.|.+|+.|.++.+. .....+. .....+..+++....-..++..+.-..+.|.++.|+|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~p--~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGPP--LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred cceEEecCCcceeeeeccCCc--ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence 678899999999999977421 1111111 0111233333333333455666677788999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
.....|++|+.|++|.+||++++.++........-+.|+|+|.+-.|.+|+.|..++.||++.. ..++...
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l---------~~p~~v~ 268 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL---------SRPLNVH 268 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhh---------cccchhh
Confidence 8889999999999999999999999999887788889999998888999999999999999963 4555688
Q ss_pred eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCc
Q 045370 155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.+|...|.++.|+|.| +++||.|.+|+||..+.+..-..+. .-...|.++.||.|.+++++||.+.
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 8999999999999999 9999999999999998776544332 2345799999999999999888774
No 107
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=154.98 Aligned_cols=185 Identities=20% Similarity=0.246 Sum_probs=150.2
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
+.|||||.|.+|++||+. .+.+...+..|.+.|.++.|++..+.++++|+.|+
T Consensus 257 nVLaSgsaD~TV~lWD~~---------------------------~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVD---------------------------TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDG 309 (463)
T ss_pred eeEEecCCCceEEEEEcC---------------------------CCCcceehhhcCCceeEEEecCCCceEEEeccccc
Confidence 579999999999999999 67888888899999999999999999999999999
Q ss_pred cEEEEeCCCC-ceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 88 TCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 88 ~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
+|.+.|.+.. ..-..+...+.|..++|+|.. ..+++++.||.|+-+|+|+ ..+++..+..|.++|.++.
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~---------~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN---------PGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC---------CCCceeEEEeccCCcceEE
Confidence 9999999953 333346788999999999955 5777888999999999996 4577889999999999999
Q ss_pred ecCCe---EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 166 FSASH---LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 166 ~~~~~---l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
+++.. +++++.|+.|++|++..-. .++.-.-..+...|.++.|+-.++++.++...++++|+.
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 98765 9999999999999986533 333222223457788888887766655555445555544
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=1.1e-20 Score=163.66 Aligned_cols=176 Identities=24% Similarity=0.295 Sum_probs=149.2
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
|+.+|++|+.|++|.+|... ...++.++.+|...|.++.... ++. +++||+
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~---------------------------~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSW 120 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLS---------------------------QAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSW 120 (745)
T ss_pred cCcceEeecccceEEEEecC---------------------------CCCchhhhhccccceeeeecCC-cCc-eEeccc
Confidence 44568999999999999998 5788899999999999997644 333 899999
Q ss_pred CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
|.++++|....-... ..+|+..|.++..-|.+ .+++|+.|..|++|.- ....+.+.+|...|..++
T Consensus 121 D~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~------------~~~l~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 121 DSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG------------GTLLKTFSGHTDCVRGLA 186 (745)
T ss_pred ccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC------------CchhhhhccchhheeeeE
Confidence 999999987643222 35799999999999877 8999999999999974 344558999999999999
Q ss_pred ecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 166 FSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 166 ~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
+-++. +++++.||.|++|++ ++.++.++.+|...+.++...+++..+++++.|. .+++|
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr-tlriW 246 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR-TLRIW 246 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc-eEEEe
Confidence 99996 999999999999999 7899999999999999999888888888777664 33344
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.1e-21 Score=164.20 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=146.4
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee--ccccCCceEEEEeeCCCcE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS--LEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~ 79 (350)
.+|...++++||+. |.|+|||+.... ...++..+ ......|.++..++ ++..
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg------------------------~k~PvsqLdcl~rdnyiRSckL~p-dgrt 479 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPG------------------------NKSPVSQLDCLNRDNYIRSCKLLP-DGRT 479 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCC------------------------CCCccccccccCcccceeeeEecC-CCce
Confidence 46777889999986 789999998321 11122221 22456777877766 6778
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
|++|+.-.+|.|||+.......... ....+.+++.+||.+..++++.||.|.|||+. ....++.+.+
T Consensus 480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh----------nq~~VrqfqG 549 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----------NQTLVRQFQG 549 (705)
T ss_pred EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----------cceeeecccC
Confidence 9999999999999998766544322 22357889999999999999999999999999 4566779999
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
|+..+.||.++++| |.+|+-|.+||-||+++++.+.... ..+.|.++..+|++.+|++|-....++...
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEe
Confidence 99999999999999 9999999999999999987665544 456778888888888888777766666554
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.4e-20 Score=160.82 Aligned_cols=185 Identities=21% Similarity=0.280 Sum_probs=151.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|+. .+.||.|. ...|.+|+.. ..........+.+.|+++.|++ ++.+|
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~---------------------------s~~v~~l~~~~~~~vtSv~ws~-~G~~L 232 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSAS---------------------------SGSVTELCSFGEELVTSVKWSP-DGSHL 232 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecC---------------------------CCceEEeEecCCCceEEEEECC-CCCEE
Confidence 46773 44666664 4679999988 2333333333489999999966 78899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
++|..+|.|.|||..+.+.+..+. |...|.+++|. +..+.+|+.|+.|..+|++.... ....+.+|.
T Consensus 233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~ 301 (484)
T KOG0305|consen 233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH---------VVSTLQGHR 301 (484)
T ss_pred EEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh---------hhhhhhccc
Confidence 999999999999999887777753 78899999996 78999999999999999996432 222478899
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC-CeEEeeecC-ccccccc
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNC-QRKLKKD 226 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~-~~~~~~~ 226 (350)
..|..+.|++++ +|+|+.|+.+.|||.....++..+..|.++|..++|+|-. .+||+|++. ++.++.|
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 999999999999 9999999999999999889999999999999999999975 577776654 6777777
No 111
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=4.5e-20 Score=142.83 Aligned_cols=219 Identities=17% Similarity=0.141 Sum_probs=167.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+.+.+.++|+||+.|.++++||++ .++.+..+ ....+|..+.|+. ++++++
T Consensus 59 Did~~s~~liTGSAD~t~kLWDv~---------------------------tGk~la~~-k~~~~Vk~~~F~~-~gn~~l 109 (327)
T KOG0643|consen 59 DIDWDSKHLITGSADQTAKLWDVE---------------------------TGKQLATW-KTNSPVKRVDFSF-GGNLIL 109 (327)
T ss_pred EecCCcceeeeccccceeEEEEcC---------------------------CCcEEEEe-ecCCeeEEEeecc-CCcEEE
Confidence 445678899999999999999999 45555444 4567889999976 455554
Q ss_pred EEe-----CCCcEEEEeCC-------CCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370 82 SSS-----LDATCKVWDLG-------SGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE 148 (350)
Q Consensus 82 s~~-----~d~~v~vwd~~-------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 148 (350)
.+. ..+.|.++|++ ...+... ..+...++.+.|.|-+.+|++|..||.|.+||++++.
T Consensus 110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------- 180 (327)
T KOG0643|consen 110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK--------- 180 (327)
T ss_pred EEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------
Confidence 443 34679999998 3444444 3466889999999999999999999999999999753
Q ss_pred ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc-ccc--
Q 045370 149 DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ-RKL-- 223 (350)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~-- 223 (350)
+.+.....|...|+.|+++|+. +++++.|.+-++||.++.++++++. ...||.+.+++|...+++.+++.. +-+
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeee
Confidence 2233556788899999999999 9999999999999999999999998 467999999999888777666531 100
Q ss_pred --------ccc-----------cCCccccCCCCccccccceEEeeccccCCCCccccc
Q 045370 224 --------KKD-----------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSIN 262 (350)
Q Consensus 224 --------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 262 (350)
... .+...-.++.+..+++++...+ .|..+|.+++-
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs---SGGEDG~VR~h 314 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS---SGGEDGYVRLH 314 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc---cCCCCceEEEE
Confidence 000 3344455677888888887666 66678888665
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-20 Score=143.10 Aligned_cols=183 Identities=18% Similarity=0.203 Sum_probs=141.5
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS 84 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 84 (350)
-|.+||+++.||.|.||.-+++ .-........|...|++++|-|.+ +-.|++++
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g-------------------------~w~k~~e~~~h~~SVNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENG-------------------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred cCcEeeEeecCceEEEEecCCC-------------------------chhhhhhhhhhcccceeecccccccceEEEEee
Confidence 6899999999999999987731 122344567899999999997754 35688999
Q ss_pred CCCcEEEEeCCCC-ceE-E--EEecCCceeEEEEcCC---C-----------cEEEEEccCCeEEEEeCCcccccccccc
Q 045370 85 LDATCKVWDLGSG-ILI-Q--TQVYPQAVTAIAFHPG---E-----------QLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 85 ~d~~v~vwd~~~~-~~~-~--~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.||.|.|.+++.. ... . ...|.-.|++++|.|. | +.|++|+.|..|++|+..+....
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~----- 198 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK----- 198 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----
Confidence 9999999998865 221 1 1458889999999985 4 56999999999999999865211
Q ss_pred ccccceeeeccCCceEEEEecCCe------EEEEeCCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeee
Q 045370 147 GEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~------l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 217 (350)
.-..+.+|.+.|+.++|.|.. ++++++||+|.||-.+... ....+.....++.++.||+.|.+|++++
T Consensus 199 ---~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 199 ---LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred ---hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 112588999999999999975 9999999999999766321 1112233557899999999999999777
Q ss_pred cCcc
Q 045370 218 NCQR 221 (350)
Q Consensus 218 ~~~~ 221 (350)
++.+
T Consensus 276 GdNk 279 (299)
T KOG1332|consen 276 GDNK 279 (299)
T ss_pred CCcE
Confidence 6643
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.7e-19 Score=134.17 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=143.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|.|.+.+.|+...+.+|-.......... .+..+ .............|.+.|.|.+|++ .++++
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~---~hea~---------~~pp~v~~kr~khhkgsiyc~~ws~-~geli 104 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRH---AHEAA---------KQPPSVLCKRNKHHKGSIYCTAWSP-CGELI 104 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCccc---ccccc---------cCCCeEEeeeccccCccEEEEEecC-ccCeE
Confidence 58999999999999999999876552111100 00000 0001122334577999999999966 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEE------EecCCceeEEEE----------------------------------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQT------QVYPQAVTAIAF---------------------------------------- 114 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~------~~~~~~v~~~~~---------------------------------------- 114 (350)
++|+.|.+|++..++...+... --|.+.|..++|
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 9999999999987654322111 113333333333
Q ss_pred ------cCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec---cCCceEEEEecCCe--EEEEeCCCcEEEE
Q 045370 115 ------HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG---HNGSITALAFSASH--LISASEDKTVCLW 183 (350)
Q Consensus 115 ------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~--l~s~~~dg~v~iw 183 (350)
+-++-+|++|+.|.+|++||++-......... .+.+ ....|.+++..|.| |++|..|....+|
T Consensus 185 hilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~------~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 185 HILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC------cccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 22455688899999999999985443321111 1111 23679999999999 9999999999999
Q ss_pred ECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 184 DVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 184 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
|++.++.+..+..|...|.++.|+|...++++++.|..+
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 999999999999999999999999999999988877543
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=4e-20 Score=155.24 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=142.0
Q ss_pred eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCCc
Q 045370 2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~ 78 (350)
+|+|+. ..|+|++.||+++|||+.+...+. ..+.. ..+..-+++.++|++ ++.
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------------------qVik~k~~~g~Rv~~tsC~~nr-dg~ 330 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------------------QVIKTKPAGGKRVPVTSCAWNR-DGK 330 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhhe-----------------------eEEeeccCCCcccCceeeecCC-Ccc
Confidence 688976 578999999999999998422111 11111 124456788888866 778
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEE----EecCC--ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQT----QVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~----~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
+||+|+.||+|.+|+......... -.|.. .|+||.|+++|++|++-+.|+.+++||+++.+.. +.
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp---------L~ 401 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP---------LN 401 (641)
T ss_pred hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc---------hh
Confidence 899999999999999865432222 23555 8999999999999999999999999999975422 22
Q ss_pred eeec--cCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 153 VLKG--HNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 153 ~~~~--~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
...+ ..-+-+.++|+|+. +++|.. .|.+++||..+...++.+......|..+.|+|--+.++++++++..
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCce
Confidence 2222 22355778999998 666643 4789999999999999998778899999999997777768777654
Q ss_pred ccc
Q 045370 223 LKK 225 (350)
Q Consensus 223 ~~~ 225 (350)
-.+
T Consensus 482 ~vy 484 (641)
T KOG0772|consen 482 HVY 484 (641)
T ss_pred EEE
Confidence 433
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.6e-20 Score=157.22 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=162.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++.|||.+..+++..||.|.|||+. ....++.+.+|++.+.||..++ ++..|
T Consensus 515 La~spDakvcFsccsdGnI~vwDLh---------------------------nq~~VrqfqGhtDGascIdis~-dGtkl 566 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLH---------------------------NQTLVRQFQGHTDGASCIDISK-DGTKL 566 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcc---------------------------cceeeecccCCCCCceeEEecC-CCcee
Confidence 5789999999999999999999999 5778899999999999998854 78889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
.||+-|++|+.||++++..+........|.++.++|++.++++|-.++.+.+.... ......+..|...
T Consensus 567 WTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-----------kp~kyqlhlheSc 635 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-----------KPEKYQLHLHESC 635 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-----------CccceeecccccE
Confidence 99999999999999999988888888999999999999999999999999887665 2333466789999
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
|.++.|.+.| +++.+.|..+..|.+.-|..+.... ..++|.++..+.|.+++++|+++.
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence 9999999999 9999999999999999999888877 578999999999999999999873
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=150.24 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=135.1
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
.--.++|.+++.++ .|.+++.|+..|.|.+|.+.+|.++..+ .|-..|+|+.|+-||.+|++|+.||.|.+|.+...-
T Consensus 78 ~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 78 IVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 33467889998755 7888888889999999999999988875 588999999999999999999999999999986533
Q ss_pred cccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSE 215 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 215 (350)
..... ....+...+..|.-+|+++...+.+ ++|+|.|.++++||+..+.++.++. ...++.+++.+|-++.+++
T Consensus 157 ~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 157 SADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ccccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence 22211 1456778999999999999998775 9999999999999999998888876 4677888888888888888
Q ss_pred eecCcccccc
Q 045370 216 VSNCQRKLKK 225 (350)
Q Consensus 216 ~~~~~~~~~~ 225 (350)
|+.++.++-.
T Consensus 235 Gt~~G~I~~~ 244 (476)
T KOG0646|consen 235 GTEEGKIFQN 244 (476)
T ss_pred cCCcceEEee
Confidence 8887766544
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=141.68 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=143.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.||+.|.+||+|+.||.|.|||+. +....+.+.+|..+|.+++|++ ++..|
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~---------------------------T~~iar~lsaH~~pi~sl~WS~-dgr~L 80 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFD---------------------------TFRIARMLSAHVRPITSLCWSR-DGRKL 80 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEcc---------------------------ccchhhhhhccccceeEEEecC-CCCEe
Confidence 3699999999999999999999999 4667778899999999999966 78899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcE-EEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL-LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+|++.|..|.+||+..|.+++.+....+|..+.|+|.... +++.-.+..-.+.++..+....-........ ..
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl------n~ 154 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL------NS 154 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc------cc
Confidence 9999999999999999999999999999999999995543 3333233334444444211100000000000 01
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeEEeeecCccccccc
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
...+..|.+.| +++|...|.+.++|..+.+++..+.... ..|.++-|+..|++|+..+.| ++++..
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD-RvIR~y 223 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD-RVIRTY 223 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC-ceEEEE
Confidence 11223566666 9999999999999999999999987655 789999999999999965554 444443
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.2e-19 Score=157.56 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=156.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc------cccEEEeeccc--------cccceeeeccccCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL------DQRLIEMELRS--------LRSLLHYSLEHKSS 66 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~~~h~~~ 66 (350)
|+|.|+|++|++++.||.|++|+..............+... ...+......+ ....-..+...+-+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp 98 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP 98 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc
Confidence 57999999999999999999999875422222222111100 11111110000 01111122334678
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
+.+++++. +|++++.||.|-.|++-++.+...... .+|.++|.++.|+|.+++|++.+.||.|++||+..+.+.....
T Consensus 99 ~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 99 IRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 88998855 788999999999999999988766665 5699999999999999999999999999999999876654332
Q ss_pred cccccceeeecc-CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCc
Q 045370 146 VGEDQHSVLKGH-NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 146 ~~~~~~~~~~~~-~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.... ..... ...+..++|+|++ ++..+.|+.|.+|+..++.....+. .+...+..++|+|+|+|||+++-++
T Consensus 178 ~v~k---~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 178 GVDK---DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred cCCc---cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 2111 11111 4567889999996 9999999999999999999888875 3444599999999999999777664
Q ss_pred c
Q 045370 221 R 221 (350)
Q Consensus 221 ~ 221 (350)
.
T Consensus 255 ~ 255 (933)
T KOG1274|consen 255 Q 255 (933)
T ss_pred c
Confidence 3
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=8.2e-20 Score=149.38 Aligned_cols=178 Identities=18% Similarity=0.204 Sum_probs=140.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
.....+++|+.|.+|++||+.. ..+.... -....+..|+.. ...+++|-
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k---------------------------~~C~kt~-l~~S~cnDI~~~---~~~~~SgH 319 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK---------------------------AYCSKTV-LPGSQCNDIVCS---ISDVISGH 319 (459)
T ss_pred ccccceeeccccchhhhhhhhh---------------------------hheeccc-cccccccceEec---ceeeeecc
Confidence 3344589999999999999983 2222222 223445555542 35589999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370 85 LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
.|+.|++||+++..+....+..+.|+++..++++..+.+++.|..+.+.|+++......+.... ...+ ...+.+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g----~k~a--sDwtrv 393 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG----FKCA--SDWTRV 393 (459)
T ss_pred cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc----cccc--ccccee
Confidence 9999999999999999999988999999999999999999999999999999766554332221 1112 238889
Q ss_pred EecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecC
Q 045370 165 AFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 165 ~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~ 219 (350)
.|||++ +++|+.||.|+||++.++++...+..... .|++++|+|.|..|++++.+
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 999999 99999999999999999999888864333 59999999999999977765
No 120
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4.4e-19 Score=141.25 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=149.9
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
..+||.||.-|.|+|.|+. .......+.+|...|+.+.+.|.+.++++++|.|
T Consensus 105 ~p~la~~G~~GvIrVid~~---------------------------~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVV---------------------------SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CeeEEeecceeEEEEEecc---------------------------hhhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 3488999999999999998 5778888999999999999999888999999999
Q ss_pred CcEEEEeCCCCceEEEEe----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc----------------
Q 045370 87 ATCKVWDLGSGILIQTQV----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV---------------- 146 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------- 146 (350)
.+|++|++++..++..++ |.+.|.++.|+++|.+|++++.|-.+++|++...........
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999999999999864 899999999999999999999999999999984321100000
Q ss_pred ----------------------------------------------------c----cccceeeeccCCceEEEEec--C
Q 045370 147 ----------------------------------------------------G----EDQHSVLKGHNGSITALAFS--A 168 (350)
Q Consensus 147 ----------------------------------------------------~----~~~~~~~~~~~~~i~~~~~~--~ 168 (350)
. ......+.-....|.-+.|. |
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 0 00000111122334444443 3
Q ss_pred Ce--EEEEeCCCcEEEEECCCceEE--EEec--cCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370 169 SH--LISASEDKTVCLWDVTRRVSI--RRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR 227 (350)
Q Consensus 169 ~~--l~s~~~dg~v~iwd~~~~~~~--~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~ 227 (350)
-+ ||.|...|.|++||++...+. .++. .....|...+|+.|+.+|+..+.++.+|++..
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 33 899999999999999986552 2222 22457999999999999999999998887653
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.2e-19 Score=141.35 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=138.8
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC-CceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS-GILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 137 (350)
....+.|.+++|+|....+++.+|+|++|++|++.. |..... ..|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 456789999999886667788999999999999987 444333 56899999999999999999999999999999986
Q ss_pred cccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 213 (350)
+ +...+..|.++|.++.|-+.. |++||.|.+|+.||++...++.++.- ...+.++..- ..++
T Consensus 104 ~-----------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~ 169 (347)
T KOG0647|consen 104 G-----------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMA 169 (347)
T ss_pred C-----------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--Ccee
Confidence 4 333777899999999998765 89999999999999999999988873 3445554432 3344
Q ss_pred EeeecCccccccccCCccccCCCCccccccceEEeeccccCCCCcc--cccccccchhh
Q 045370 214 SEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQC--SINIRRTKSLF 270 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 270 (350)
+++..+. -+.+..+.+..............++.+..++...++.. ++.+.....+.
T Consensus 170 vVata~r-~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 170 VVATAER-HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred EEEecCC-cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 4333332 22222222222222233333566667777766666654 44444444443
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.8e-20 Score=156.88 Aligned_cols=270 Identities=15% Similarity=0.148 Sum_probs=182.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEEEE
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFFVS 82 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s 82 (350)
-++..++||||-|+.|.+||++.+....... . .......+. ++..+|.+++.++ .+..+++
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-------------~----n~~t~~sl~sG~k~siYSLA~N~-t~t~ivs 188 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVAS-------------F----NNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVS 188 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhh-------------c----cccccccCCCCCccceeeeecCC-cceEEEe
Confidence 4577899999999999999999532200000 0 011112222 8899999999865 6688999
Q ss_pred EeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370 83 SSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161 (350)
Q Consensus 83 ~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (350)
|+..+.+++||.++++.+.. .+|...|.++..+++|+.+++++.||+|++||+. .+.++.++..|...|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----------qQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----------QQRCLATYIVHKEGV 258 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc----------ccceeeeEEeccCce
Confidence 99999999999999876655 5699999999999999999999999999999999 455666788999999
Q ss_pred EEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC--CeEEeeecCccccccccCCccccCCCC
Q 045370 162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQRKLKKDRMPSLEKYPQL 237 (350)
Q Consensus 162 ~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 237 (350)
.++..+|+. +++|+.||.|+.=|+++......+.....+|..+..+... -++.+..++.+.|... +.......
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~---~~~~l~~s 335 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE---PDIALSVS 335 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc---cccccccC
Confidence 999999988 9999999999999999854433333356788888887433 3555555555555443 21111111
Q ss_pred ccccccceEEeeccccCCCCcccccccccchhhHhhhhhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045370 238 NSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRL 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (350)
. +.+. .+.......+.....|+ ..-+|.....+.++ +...+|+.+-+...+..+
T Consensus 336 ~--~~~~-----~~T~~~~~~~~~~~tp~---------~vi~Gg~ai~k~~m----------L~dkRhVlTkDa~gnv~l 389 (735)
T KOG0308|consen 336 G--DLDF-----FSTDSNNHSCDLTNTPD---------SVIPGGAAIKKHAM----------LNDKRHVLTKDAKGNVAL 389 (735)
T ss_pred C--CCCc-----ccccCCCccccccCCCc---------eeccCchhhhhhhh----------hcCcceEeeecCCCCEEE
Confidence 1 0000 00110111111111121 22334433333222 223378888888999999
Q ss_pred HHhhhceeeeecc
Q 045370 318 LDLMQCRILWYKE 330 (350)
Q Consensus 318 ~d~~~~~~~~~~~ 330 (350)
||+..|+++..-.
T Consensus 390 wDIl~~~~~~d~g 402 (735)
T KOG0308|consen 390 WDILACVKVEDFG 402 (735)
T ss_pred EEeeeeeehhhcc
Confidence 9999999988544
No 123
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=6.6e-19 Score=143.44 Aligned_cols=197 Identities=17% Similarity=0.253 Sum_probs=152.2
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+| +...+||||.|.+|.||.+....... ....++..+.+|...|--++|+|.-.+.
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------------~ltepvv~L~gH~rrVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------------DLTEPVVELYGHQRRVGLVQWHPTAPNV 146 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCccccc--------------------CcccceEEEeecceeEEEEeecccchhh
Confidence 46888 45789999999999999987321111 1245678889999999999999988899
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
|++++.|.+|.+|++.+|..+..+.|++-|.+++|+.+|.+|++++.|..|++||.+.+... ..-.+|.+
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v----------~e~~~heG 216 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV----------SEGVAHEG 216 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEe----------eecccccC
Confidence 99999999999999999999999999999999999999999999999999999999965433 23345543
Q ss_pred -ceEEEEecCCe-EEEEe----CCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 160 -SITALAFSASH-LISAS----EDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 160 -~i~~~~~~~~~-l~s~~----~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
.-..+.|-.++ +++.+ .+..+-+||..+.+ ...++. ..+.|.---|.|+..+++.++..+..++...+
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 23445566666 66655 36789999977643 344454 34456656688999988888877666665543
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=6.2e-19 Score=146.16 Aligned_cols=188 Identities=20% Similarity=0.196 Sum_probs=146.4
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+|-.....|++++.|++|++|+++ ....+.++.+|.+.|.+|.... ....+.
T Consensus 251 ~fr~gt~~lys~s~Drsvkvw~~~---------------------------~~s~vetlyGHqd~v~~IdaL~-reR~vt 302 (479)
T KOG0299|consen 251 AFRKGTSELYSASADRSVKVWSID---------------------------QLSYVETLYGHQDGVLGIDALS-RERCVT 302 (479)
T ss_pred eeecCccceeeeecCCceEEEehh---------------------------HhHHHHHHhCCccceeeechhc-ccceEE
Confidence 555566789999999999999999 5777888999999999998865 345555
Q ss_pred EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee--eccCC
Q 045370 82 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL--KGHNG 159 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (350)
.|+.|+++++|++.....+...++.+.+.|++|- +..+|++|+.+|.|.+|++...+............... -.+..
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~ 381 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF 381 (479)
T ss_pred eccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence 6679999999999777766667788899999996 56789999999999999998655433221111111111 12335
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCCc----eEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTRR----VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+|++++..|.. +++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++|+.+++|.+.
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 89999999877 999999999999998776 4566666 57899999999999977766554
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=6.4e-19 Score=139.16 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=160.6
Q ss_pred cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE 141 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 141 (350)
...+.|.++.|.+ .+..|+.+++||++++||+........+.|..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 3468899999985 55667777899999999999998888899999999999986 678999999999999999865432
Q ss_pred cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+..|..+|.|+.+++.. +++|+.|++|++||.+.......+.. ...|.++.. .+..|++|+.+
T Consensus 89 -----------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~ 154 (323)
T KOG1036|consen 89 -----------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSD 154 (323)
T ss_pred -----------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecC
Confidence 566799999999999654 99999999999999998666666653 346766655 46666655544
Q ss_pred ccccccccCCccccCCCCccccccceEEeeccccCCCCcc--cccccccchhhHhhhhh
Q 045370 220 QRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQC--SINIRRTKSLFQHMSEL 276 (350)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 276 (350)
+.+.+++++.+..+.+....+.+.++.+..++++..|++ ++.++...++++..++.
T Consensus 155 -r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 155 -RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred -ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 444567788888888888888999999999988888887 88899998888766443
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.1e-19 Score=158.29 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=155.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--Cc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--TT 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~ 78 (350)
|+.||||++||+|..-|+++||++. ......+..+|...|.|+.|+.+. ..
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq---------------------------~l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQ---------------------------ELEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred EEECCCcceecccCccCceEEEEeh---------------------------hhhhhhheecccceeEEEeecCchhhhH
Confidence 5789999999999999999999998 456667788999999999997654 37
Q ss_pred EEEEEeCCCcEEEEeCCCCce-EEEE-ec-------------------------------------------------CC
Q 045370 79 FFVSSSLDATCKVWDLGSGIL-IQTQ-VY-------------------------------------------------PQ 107 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~-~~~~-~~-------------------------------------------------~~ 107 (350)
+|++++.|..|+|+|+...-. +.++ .| ..
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 899999999999999853210 0000 01 13
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~ 185 (350)
.+..+++.|..+++++++.|..|+|||+.+++....+. --.+|.+....+...|.| +++.+.|.++.++|.
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-------gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-------GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-------ccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 57788889999999999999999999999665433211 223577888899999999 999999999999999
Q ss_pred CCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 186 TRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
.+++++.++.+|...|+.+.|.+|-+.|++.++|+-++
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 99999999999999999999999999999888886544
No 127
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.3e-18 Score=136.56 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=141.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+.+|-+..+++++.|++|++||++ ...+...+.....+ .++|. |.|-++
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR---------------------------~~~cqg~l~~~~~p--i~AfD-p~GLif 155 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLR---------------------------VKKCQGLLNLSGRP--IAAFD-PEGLIF 155 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEec---------------------------CCCCceEEecCCCc--ceeEC-CCCcEE
Confidence 4678988999999999999999998 33443333322233 34554 478888
Q ss_pred EEEeCCCcEEEEeCCCC--ceEEEEe----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 81 VSSSLDATCKVWDLGSG--ILIQTQV----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
|++.....|++||++.- .+...+. .....+.+.|+|+|++++.++..+.+++.|.-.+.... .+
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~----------tf 225 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS----------TF 225 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee----------eE
Confidence 99888889999999863 3444433 34578899999999999999999999999988654332 44
Q ss_pred eccCCc---eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc-CCCceeEEEEEccCCeEEeeecCcccc
Q 045370 155 KGHNGS---ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 155 ~~~~~~---i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
.++... -....|+|++ +++|+.||+|++|+++++..+..+.+ +.+++.++.|+|.-..+++++.....|
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW 300 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence 444322 2567899999 88899999999999999999999987 688999999999999998777665555
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=6.6e-19 Score=152.87 Aligned_cols=166 Identities=23% Similarity=0.338 Sum_probs=137.9
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
++. |+|||.|.++++|-.. .+...+.+|+..|++++..|.+ .++||+.
T Consensus 112 ~~~-~iSgSWD~TakvW~~~-----------------------------~l~~~l~gH~asVWAv~~l~e~--~~vTgsa 159 (745)
T KOG0301|consen 112 DGT-LISGSWDSTAKVWRIG-----------------------------ELVYSLQGHTASVWAVASLPEN--TYVTGSA 159 (745)
T ss_pred cCc-eEecccccceEEecch-----------------------------hhhcccCCcchheeeeeecCCC--cEEeccC
Confidence 444 8999999999999764 4445589999999999998854 6899999
Q ss_pred CCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370 86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
|.+|++|.- ++.+.++ .|.+.|+.+++-++ ..|++++.||.|+.|++. .+.+....+|+..|+++
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-----------ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-----------GEVLLEMHGHTNFVYSI 225 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-----------CceeeeeeccceEEEEE
Confidence 999999986 5566664 59999999999864 467889999999999985 45566888999999999
Q ss_pred Ee-cCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 165 AF-SASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 165 ~~-~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.. .+++ ++++++|++++||+.. .+...+......++++.+-++|.+++ |++|+
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv-g~SDG 280 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV-GGSDG 280 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE-eccCc
Confidence 94 4555 9999999999999987 77777775566899999999999888 55554
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.9e-20 Score=168.88 Aligned_cols=193 Identities=20% Similarity=0.292 Sum_probs=149.1
Q ss_pred CeecCCCCE----EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370 1 MVFSDDGFL----LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG 76 (350)
Q Consensus 1 i~~s~dg~~----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 76 (350)
++|.+.|.. ||.|..||.|.+||..... .......+.....|++.|.++.|++..
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~---------------------~~~~~~~la~~~~h~G~V~gLDfN~~q 128 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASII---------------------ANASEEVLATKSKHTGPVLGLDFNPFQ 128 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhc---------------------cCcchHHHhhhcccCCceeeeeccccC
Confidence 467776654 8999999999999988310 011244566778999999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
++++++|+.||.|.|||+.+-+.-... ...+.|.+++|+.. .+.|++++.+|.+.|||++.. +++.
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------~pii 198 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------KPII 198 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC----------Cccc
Confidence 889999999999999999975443333 35678999999874 567888999999999999943 3333
Q ss_pred eeeccC--CceEEEEecCCe---EEEEeCCC---cEEEEECCC-ceEEEEeccCCCceeEEEEEccC-CeEEeeecCccc
Q 045370 153 VLKGHN--GSITALAFSASH---LISASEDK---TVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNCQRK 222 (350)
Q Consensus 153 ~~~~~~--~~i~~~~~~~~~---l~s~~~dg---~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~~~~ 222 (350)
.+..+. ..+..++|+|+. +++++.|. .|.+||+|. ..+++.+.+|...|.++.|++.+ .+|++++.|+++
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 444443 357889999998 77777654 699999986 55778888999999999999987 677766666655
Q ss_pred cc
Q 045370 223 LK 224 (350)
Q Consensus 223 ~~ 224 (350)
+.
T Consensus 279 i~ 280 (1049)
T KOG0307|consen 279 IC 280 (1049)
T ss_pred eE
Confidence 43
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=4.3e-19 Score=148.56 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=153.4
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
..|+++|+..+.|+|||+. ...+.+.+.+|...|+++.|+. ...+|++++..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~---------------------------~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~g 142 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR---------------------------AKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDG 142 (673)
T ss_pred ceeeeccCcCceeeehhhH---------------------------HHHHhhhccCCcceeEEEEecC-CcceeEEeccC
Confidence 4689999999999999998 5677788999999999999966 45789999999
Q ss_pred CcEEEEeCCCCceEEEEecC--CceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 87 ATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
|-|.|..+.++.....+.++ ..|+-+.|+|..+ +|.+++.+|.|.+||+.... ....-...|..+...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~g 213 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRG 213 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCc
Confidence 99999999999877777765 4577999999776 45678889999999998432 222244579999999
Q ss_pred EEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 164 LAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 164 ~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
++|+|.. |++.+.|..|.+||.+..+....+. ...|.+.++|+++|.+|++|...++++..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~Y 277 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAY 277 (673)
T ss_pred ceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEE
Confidence 9999988 9999999999999999888887776 46799999999999999988888877654
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.9e-19 Score=139.65 Aligned_cols=195 Identities=19% Similarity=0.256 Sum_probs=161.3
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
..+.+++.|.+.+||.++ .+.++..+.+|.+.|+++.|++ .+.++++++.|+
T Consensus 161 pi~gtASADhTA~iWs~E---------------------------sg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLE---------------------------SGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDE 212 (481)
T ss_pred cceeecccccceeEEeec---------------------------cccceeeecccccceeeEEecc-ccceEEEccCCc
Confidence 477889999999999999 6899999999999999999966 678999999999
Q ss_pred cEEEEeCC------C------------------------------Cc----eEEE-EecCCceeEEEEcCCCcEEEEEcc
Q 045370 88 TCKVWDLG------S------------------------------GI----LIQT-QVYPQAVTAIAFHPGEQLLFAGSI 126 (350)
Q Consensus 88 ~v~vwd~~------~------------------------------~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 126 (350)
+-.||... . +. ++.. ..|...|.+..|-..|..+++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 99999721 0 00 1111 236778888899999999999999
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeE
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTN 203 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~ 203 (350)
|.+..+||+++ .+.+..+.+|....+.+.-+|.. +++++.|.+.++||++. -..+..|.+|...|++
T Consensus 293 DRTAnlwDVEt----------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 293 DRTANLWDVET----------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred cccceeeeecc----------CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 99999999995 44555889999999999999988 88889999999999985 3457778999999999
Q ss_pred EEEEccCCeEEeeecCccccccccCCccccCCCCccccc
Q 045370 204 LVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSM 242 (350)
Q Consensus 204 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (350)
+.|..+.+.+ .++|++.+++|++.++..++.....+.
T Consensus 363 ~vF~~dd~vV--SgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 363 VVFNTDDRVV--SGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred EEEecCCcee--ecCCCceEEEeeeccccCcceeeecCC
Confidence 9999887655 566788889998888887776655443
No 132
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=9.5e-19 Score=139.11 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=148.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|||.+|+.| ..+.|+|||+.++.+.+..... ....-.+..+-+.+++|+|.+...+
T Consensus 164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t-------------------~~~~k~gq~giisc~a~sP~~~~~~ 223 (406)
T KOG2919|consen 164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT-------------------VTKGKFGQKGIISCFAFSPMDSKTL 223 (406)
T ss_pred EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhh-------------------hhcccccccceeeeeeccCCCCcce
Confidence 5899999999876 5689999999754433322111 1111234467788999999888899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
+.|+...++-|+.-..+.++..+ .|.+.|+.++|+++|+.|++|+. |-.|..||++. ...++..+..|.
T Consensus 224 a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~---------~~~pv~~L~rhv 294 (406)
T KOG2919|consen 224 AVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY---------SRDPVYALERHV 294 (406)
T ss_pred eeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh---------ccchhhhhhhhc
Confidence 99999999999998888888774 69999999999999999999985 68999999995 344444555565
Q ss_pred C-ceEEEE--ecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 159 G-SITALA--FSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 159 ~-~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
. .-..|. ..|.+ |++|+.||.|++||+.. +..+..+..+...+..++++|--.+++++++ .+++
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG-qr~f 364 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG-QRIF 364 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC-ceee
Confidence 4 333344 45666 99999999999999998 7767778888899999999999888885554 3444
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=148.12 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=159.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|++ |..|++.+.+|.|.-||+. ............+.|++++.++ .+..+
T Consensus 75 L~W~e-~~RLFS~g~sg~i~EwDl~---------------------------~lk~~~~~d~~gg~IWsiai~p-~~~~l 125 (691)
T KOG2048|consen 75 LAWAE-GGRLFSSGLSGSITEWDLH---------------------------TLKQKYNIDSNGGAIWSIAINP-ENTIL 125 (691)
T ss_pred EEEcc-CCeEEeecCCceEEEEecc---------------------------cCceeEEecCCCcceeEEEeCC-ccceE
Confidence 57884 5577888899999999999 5677777788899999999976 55789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+.|+.||.+..++...+...... ...+.+.++.|+|++..+++|+.||.|++||...+.......+. ..+.-+..
T Consensus 126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~--~d~l~k~~ 203 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ--LDRLSKRE 203 (691)
T ss_pred EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec--ccccccCC
Confidence 99999998888888888776652 35688999999999999999999999999999976543311110 11111123
Q ss_pred CCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370 158 NGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR 227 (350)
Q Consensus 158 ~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~ 227 (350)
..-|.++.+-.++ +++|..-|+|.+||...+..+..+..|.+.|.+++..+++..+++++-|.+++....
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 4457778777777 999999999999999999999999999999999999999999999999988776653
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.3e-18 Score=134.92 Aligned_cols=182 Identities=21% Similarity=0.256 Sum_probs=139.2
Q ss_pred EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370 9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT 88 (350)
Q Consensus 9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 88 (350)
.|+.|++...|.=+++......... .......+...+..|.++|++++. ++.++++||.|-+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~---------------s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDet 64 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTD---------------SVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDET 64 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcccccc---------------ccceeeeccccccccccceeEEEe---cceeEeccCCCCc
Confidence 4678888888888877621100000 000012334566889999999998 5678999999999
Q ss_pred EEEEeCCCCceEEE-EecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 89 CKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 89 v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
|+|||+.....+.. +.|.+.|+++.|.+.-. +|++|+.||.|.+|+...+. .+..+++|.+.|+.++
T Consensus 65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~----------~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE----------LLKSLKAHKGQVTDLS 134 (362)
T ss_pred EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE----------EeeeecccccccceeE
Confidence 99999998877766 56899999999998665 99999999999999999653 3448889999999999
Q ss_pred ecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 166 FSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 166 ~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+|.+ .++.+.|+.+++||+-+|+.-..+.- ....+.+.|+|.|.+++.++.+
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 99999 56778899999999998887666552 2223448899999866655544
No 135
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=142.13 Aligned_cols=185 Identities=21% Similarity=0.312 Sum_probs=144.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|++||..|++|+.||++|||++. ....+.....|...|.++.|++ ++.+|
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~P---------------------------s~~t~l~e~~~~~eV~DL~FS~-dgk~l 201 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWP---------------------------SMLTILEEIAHHAEVKDLDFSP-DGKFL 201 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecC---------------------------cchhhhhhHhhcCccccceeCC-CCcEE
Confidence 5899999999999999999999987 3556667789999999999965 88899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCC---cE--EEEEccCCeEEEEeCCccccccccccccccce
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGE---QL--LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
++-+.| ..+||+.+++..+.... .+.....+.|..++ .+ ++....-+.|..||+..+.-.. .. +.+
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~-~l----~~~ 275 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN-FL----RLR 275 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc-cc----chh
Confidence 999999 89999999997766643 33346778888776 33 3333345778888877543321 00 111
Q ss_pred eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecC
Q 045370 153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
........|++++.+++| ++.|+.||.|-|++..+.+.++-++ .|...|+.+.|+|+.+++++.+.+
T Consensus 276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence 222234589999999999 9999999999999999988887765 789999999999999999876655
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=132.34 Aligned_cols=214 Identities=22% Similarity=0.235 Sum_probs=154.5
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee------C
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS------G 75 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~ 75 (350)
.|||||..|++-+.|..+.+|++....-.... ++.+ ...............|...+|.+ |
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~--------~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--------DGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCC--------CCcc------ccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 69999999999999999999998731111110 0000 00111112223345666767763 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCC---ceeEEEEcCCCcEEEEEccCCeEEEEeC-Ccccccccccccc
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPL-KFLLLEDHFIVGE 148 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~ 148 (350)
+..++++.+.+..|++||.-+|+...++. |.+ ...+++|+|||..|++|. ...|++||+ +.+.........
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~- 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV- 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh-
Confidence 66889999999999999999999887753 333 467899999999999886 689999999 433211110000
Q ss_pred ccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 149 DQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
..--.+..+.|.|++|+|.. ++.|+....+-||.-..+.++..+.+|.+.|+.++|.++|..|++|+...-.+..
T Consensus 200 --~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 200 --TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred --hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 00122346789999999976 9999999999999988999999999999999999999999999999887666666
Q ss_pred ccCCcccc
Q 045370 226 DRMPSLEK 233 (350)
Q Consensus 226 ~~~~~~~~ 233 (350)
|+++....
T Consensus 278 WDiR~~~~ 285 (406)
T KOG2919|consen 278 WDIRYSRD 285 (406)
T ss_pred Eeehhccc
Confidence 76555443
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.2e-19 Score=162.25 Aligned_cols=186 Identities=20% Similarity=0.301 Sum_probs=150.6
Q ss_pred CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCc
Q 045370 1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~ 78 (350)
+.|++... +||+|+.||.|.|||+.+.. ..... .....+.|.+++|+....+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------------tP~~~~~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPE--------------------------TPFTPGSQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcC--------------------------CCCCCCCCCCcccceEeccchhhhH
Confidence 57888765 99999999999999998421 11111 2345688999999887788
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecC---CceeEEEEcCCCc-EEEEEccC---CeEEEEeCCccccccccccccccc
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQ-LLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
.|++++.+|.+.|||++..+.+..+... ..+..+.|||+.. .+++++.| -.|.+||+|. ...+.
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---------assP~ 246 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---------ASSPL 246 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc---------cCCch
Confidence 9999999999999999988776665433 3488999999764 66666655 4899999995 45566
Q ss_pred eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCcc
Q 045370 152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQR 221 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~~ 221 (350)
+.+++|...|.++.|++.. +++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+++
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 6889999999999999876 99999999999999999999999998788999999999887 5555555543
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=2.3e-18 Score=142.71 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=149.4
Q ss_pred CeecCCC--CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 1 MVFSDDG--FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
++|+|.. +++|+|..-|.|-+||+.+. .....-+..+..|..+|.++.|+|.+..
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~-----------------------~~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQ-----------------------EKDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCC-----------------------CCccCceEEeccCCccccceEecCCChh
Confidence 5788865 48899999999999999510 0123345667889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
.+++.+.||+|++-|++.+.....+. ....+.++.|+.+...++.+..=|...+||+++.. .....+.
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~---------s~~~~~~ 319 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG---------SEYENLR 319 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC---------ccchhhh
Confidence 99999999999999999765433332 23457778888888888888777899999999643 3333566
Q ss_pred ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE-----EEEeccCCCceeEEEEEccCCeEEeeecCc--ccccc
Q 045370 156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRRVS-----IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKK 225 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~ 225 (350)
-|...|+.++++|-. |+|++.|++++|||++.... +..+ .|..+|.+..|||.+--|++.+.|. ++|..
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 788899999999987 99999999999999986322 3333 5899999999999987788777763 44444
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.7e-18 Score=150.05 Aligned_cols=178 Identities=21% Similarity=0.280 Sum_probs=145.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+.+|+++|.||.|-.|++-++. .......+.+|.++|.++.|+| .+.+|
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~---------------------------D~s~~~~lrgh~apVl~l~~~p-~~~fL 153 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLD---------------------------DSSQEKVLRGHDAPVLQLSYDP-KGNFL 153 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEecc---------------------------ccchheeecccCCceeeeeEcC-CCCEE
Confidence 4789999999999999999999988 4667778899999999999977 77899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe---------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV---------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
|+.+.||.|++||+.++.+...+. ....+..++|+|++..+++.+.|+.|.+|+...+......
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L------- 226 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL------- 226 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-------
Confidence 999999999999999988766643 1345788999999999999999999999999876544322
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
....+...+.++.|+|+| ||+++.||.|.|||..+-.. ......|.+++|.|+..-+.....
T Consensus 227 -r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 227 -RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred -cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence 122344559999999999 99999999999999998221 223568999999999876654433
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=8.9e-17 Score=136.93 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=125.9
Q ss_pred CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+|+|+.+ ++++.++.|++||..+ ......+..+.. +..++|++.+..+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~-~~~~~~~~~g~~l 87 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLAT---------------------------GEVIGTLPSGPD-PELFALHPNGKIL 87 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCC---------------------------CcEEEeccCCCC-ccEEEECCCCCEE
Confidence 4799999876 5677899999999882 333333333333 4567776644444
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-eEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
+++++.|+.|++||+.+++.+..+.....+.+++|+|++.++++++.++ .+.+||..+..... .. ...
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----------~~-~~~ 156 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----------NV-LVD 156 (300)
T ss_pred EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----------EE-EcC
Confidence 4566678999999999988877777666678999999999999988765 56778887543221 11 122
Q ss_pred CceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCC-----C--ceeEEEEEccCCeEEeeec
Q 045370 159 GSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKK-----G--VVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 159 ~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~--~v~~l~~~~~~~~l~~~~~ 218 (350)
..+.++.|+|++ + +++..++.|++||+.+++.+..+..+. . ....++|+|++++++++..
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 345778999998 5 444569999999999998877664221 1 2356889999998665543
No 141
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=7e-18 Score=138.27 Aligned_cols=147 Identities=18% Similarity=0.385 Sum_probs=102.5
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l 80 (350)
+|.|||..+++|+.|++|..||++ +.......+-. ..|.+++..+ ++.++
T Consensus 319 ~W~pDg~~~V~Gs~dr~i~~wdlD----------------------------gn~~~~W~gvr~~~v~dlait~-Dgk~v 369 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSPDRTIIMWDLD----------------------------GNILGNWEGVRDPKVHDLAITY-DGKYV 369 (519)
T ss_pred EEccCCceeEecCCCCcEEEecCC----------------------------cchhhcccccccceeEEEEEcC-CCcEE
Confidence 789999999999999999999998 22233332222 4466666543 55666
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC--------------------------------------------
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-------------------------------------------- 116 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-------------------------------------------- 116 (350)
++.+.|..|++++..+......+....+|++++.+.
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 666667777666655433322222233333333333
Q ss_pred -CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC
Q 045370 117 -GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR 187 (350)
Q Consensus 117 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~ 187 (350)
+..++++|+.|+.|+||+.. .++++..+.||...|+|++|+|.. +|+++.||+|+||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~----------sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRI----------SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEcc----------CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 33567778888888888877 456666999999999999999987 99999999999997653
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=6.6e-18 Score=137.68 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=137.2
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce--------EEEEecCCceeEEEEcCC-CcEEEEEcc
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL--------IQTQVYPQAVTAIAFHPG-EQLLFAGSI 126 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 126 (350)
......+|+++|..+.|+|-+...+|+||.|.+|.||++..+.. +....|...|..++|||. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 34456899999999999999989999999999999999876432 223468899999999995 568889999
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeE
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTN 203 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~ 203 (350)
|..|.+|++.++. .+..+. |...|+++.|+.+| |++++.|..|||||.++++.+..-.+|.+ .-..
T Consensus 153 Dn~v~iWnv~tge----------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 153 DNTVSIWNVGTGE----------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred CceEEEEeccCCc----------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 9999999999653 233444 99999999999999 99999999999999999999998877766 3566
Q ss_pred EEEEccCCeEEeeecC--ccccccccCCccccCCC
Q 045370 204 LVVIRQSSLLSEVSNC--QRKLKKDRMPSLEKYPQ 236 (350)
Q Consensus 204 l~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 236 (350)
+.|-.+|.++.+|.+. .+.+-+|+-..+...+.
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCcce
Confidence 7798999965555443 67777776655555433
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.1e-17 Score=124.49 Aligned_cols=194 Identities=18% Similarity=0.158 Sum_probs=139.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+|+|.+++|+.|..+|.|.+..+......... ......+...++|.++|..++|. ..+|+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------~~gk~~iv~eqahdgpiy~~~f~---d~~Ll 76 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------PPGKLKIVPEQAHDGPIYYLAFH---DDFLL 76 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------CCCCcceeeccccCCCeeeeeee---hhhee
Confidence 58999999999999999999998843222111 11234455568999999999995 35677
Q ss_pred EEeCCCcEEEEeCCCCce------EEEE--e------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc
Q 045370 82 SSSLDATCKVWDLGSGIL------IQTQ--V------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG 147 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~------~~~~--~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 147 (350)
+|+ ||.|+-|..+.... +... + .-..|+++-..|..+-++.++.|+.++.||++++.
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-------- 147 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-------- 147 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--------
Confidence 776 59999988654221 1110 1 12368999999988888888899999999999654
Q ss_pred cccceeeeccCCceEEEEe-cCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCc--------eeEEEEEccCCeEEeee
Q 045370 148 EDQHSVLKGHNGSITALAF-SASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGV--------VTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~-~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~l~~~~ 217 (350)
..+.+++|++.|.++.- +.++ +++|++||++|+||.++++.+..+.....+ -+-.+..-+..+|++|+
T Consensus 148 --i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg 225 (325)
T KOG0649|consen 148 --IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG 225 (325)
T ss_pred --EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence 44488999999999998 5555 999999999999999999998887532211 11134455677888766
Q ss_pred cC-ccccccc
Q 045370 218 NC-QRKLKKD 226 (350)
Q Consensus 218 ~~-~~~~~~~ 226 (350)
+- ..+|.+.
T Consensus 226 Gp~lslwhLr 235 (325)
T KOG0649|consen 226 GPKLSLWHLR 235 (325)
T ss_pred CCceeEEecc
Confidence 54 3444444
No 144
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.5e-17 Score=141.48 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=153.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|.|-...|++++.||++++|+++.... .......++.++.+|.++|.|+++ +.++..+
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~ 359 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHEGPVLCVVV-PSNGEHC 359 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEecccCceEEEEe-cCCceEE
Confidence 35778888999999999999999952000 011134567788999999999998 5588999
Q ss_pred EEEeCCCcEEEEeCCCC---------ceE--EEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc--ccccc--
Q 045370 81 VSSSLDATCKVWDLGSG---------ILI--QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL--EDHFI-- 145 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~---------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-- 145 (350)
++|+-||+|+.|++... ..+ ...+|.+.++.+++++....|++++.||+++.|+...... .....
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcccc
Confidence 99999999999965421 111 1256899999999999999999999999999999765443 00000
Q ss_pred -----c---c----------------------cccceeeec-------cCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370 146 -----V---G----------------------EDQHSVLKG-------HNGSITALAFSASH--LISASEDKTVCLWDVT 186 (350)
Q Consensus 146 -----~---~----------------------~~~~~~~~~-------~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~ 186 (350)
+ . ...+..+.. -...++.+.++|.. .+++.+|+.|+++|..
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 0 0 000001110 11356778888887 8889999999999999
Q ss_pred CceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 187 RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 187 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
++.++.....|...++++++.|+|.+|++++.++++.
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceee
Confidence 9999999999999999999999999999988886543
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=143.10 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=110.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCCc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~ 78 (350)
+.|-|....|++++.|.++++||+. ...+... +.+|...|.+++|.+.+..
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk---------------------------~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVK---------------------------TSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeec---------------------------cceeecceeecccccccchhhhccCCCc
Confidence 3567855789999999999999999 3444444 7899999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceE-----------------------EE-----EecCCceeE---EEEcCCCcEEEEEcc-
Q 045370 79 FFVSSSLDATCKVWDLGSGILI-----------------------QT-----QVYPQAVTA---IAFHPGEQLLFAGSI- 126 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~-----------------------~~-----~~~~~~v~~---~~~~~~~~~l~~~~~- 126 (350)
.|++|+.||.|.|||++....- .. ..+...|.+ +.+..|...|++++.
T Consensus 159 vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~ 238 (720)
T KOG0321|consen 159 VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAA 238 (720)
T ss_pred ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCC
Confidence 9999999999999998743200 00 012233444 555578889998887
Q ss_pred CCeEEEEeCCccccccccccccccceeeecc---CCceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH---NGSITALAFSASH--LISASEDKTVCLWDVTR 187 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~ 187 (350)
|+.|++||++........ .......+..| .-.+.++.....| |++.+.|+.|++|++.+
T Consensus 239 D~~iKVWDLRk~~~~~r~--ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 239 DSTIKVWDLRKNYTAYRQ--EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred CcceEEEeeccccccccc--CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 999999999975433211 11111122233 3356666666655 55555688888888865
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=135.82 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=148.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|+|....|++|+.||+++||.++. .....+..+.--..+|.+.+|.+.+...+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDG-------------------------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDG-------------------------KVNPKLQSIHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecC-------------------------ccChhheeeeeccCccceeeecCCCceEE
Confidence 57999999999999999999999882 13345555566678999999977555589
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe---c-CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV---Y-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
++++....+..||+.+.+....-. + ...+....++|++++|+..+..|.|++....++...... .
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-----------K 342 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-----------K 342 (514)
T ss_pred EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-----------e
Confidence 999999999999999887665422 2 345778889999999999999999999988866554432 2
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecCccccccc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
-.+.|..++|+.++ |++++.+|.|++||++...+++.+.. .+ .-+++|.++++.+||+|+..+ +++++
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~G-iVNIY 414 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSG-IVNIY 414 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcc-eEEEe
Confidence 34789999999988 88888899999999999999999863 23 346778889999999777664 33443
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=135.68 Aligned_cols=188 Identities=18% Similarity=0.208 Sum_probs=148.1
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
..||++++|+..|..|.|.+.... ++..+. ...-.+.|..++|++ ++..|+
T Consensus 310 eVShd~~fia~~G~~G~I~lLhak---------------------------T~eli~-s~KieG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAK---------------------------TKELIT-SFKIEGVVSDFTFSS-DSKELL 360 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhh---------------------------hhhhhh-eeeeccEEeeEEEec-CCcEEE
Confidence 468999999999999999998876 233333 334578899999986 557777
Q ss_pred EEeCCCcEEEEeCCCCceEEEEecCCcee--EEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 82 SSSLDATCKVWDLGSGILIQTQVYPQAVT--AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
+++.+|.|.+||++...+++.+...+.|. ++|.++++.+|++|+..|.|.|||..+..... ..+++..+..-..
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~----~PkPik~~dNLtt 436 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST----NPKPIKTVDNLTT 436 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC----CCCchhhhhhhhe
Confidence 77889999999999999999987666654 56667899999999999999999977543322 3555566666678
Q ss_pred ceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEecc---CCCceeEEEEEccCCeEEeeecCccc
Q 045370 160 SITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNH---KKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 160 ~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
.|++|.|+|+. +++...+..+++-.+.+......++. ..+.|+||+|+|.+.+|+.|...+++
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 89999999998 44444678899999998887777753 34579999999999999977776543
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=127.85 Aligned_cols=191 Identities=21% Similarity=0.229 Sum_probs=144.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-CCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-GGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~ 79 (350)
|.|.|++..+++-. |..|.+|+++........ -.......|....++-+|+| .+++.
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vae---------------------v~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE---------------------VLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchhee---------------------ecccccccccceecccccCCCCccce
Confidence 46899999998775 899999999842211100 00111123666777888987 45666
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
+++. .|+++..||+++......+. |...+..+.|+|+.. +|++|+.||.|++||.+. ...++..+.+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---------tk~pv~el~~ 256 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---------TKFPVQELPG 256 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---------CCccccccCC
Confidence 6665 48999999999887777654 788899999999765 678889999999999995 5566778999
Q ss_pred cCCceEEEEecCCe---EEEEeCCCcEEEEECCCc-----------------------------eEEEEeccCCCceeEE
Q 045370 157 HNGSITALAFSASH---LISASEDKTVCLWDVTRR-----------------------------VSIRRFNHKKGVVTNL 204 (350)
Q Consensus 157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l 204 (350)
|...|.++.|+|.. +++|+.|..|.+|...+- ..+.++..|...|.++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 99999999999976 999999999999965321 1234566788999999
Q ss_pred EEEccCCeE-EeeecCcccc
Q 045370 205 VVIRQSSLL-SEVSNCQRKL 223 (350)
Q Consensus 205 ~~~~~~~~l-~~~~~~~~~~ 223 (350)
+|+.-..++ ++-+.|++++
T Consensus 337 aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred eeccCCCeeEEEeccCceEE
Confidence 999887755 4556666655
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.75 E-value=4.6e-16 Score=130.84 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=146.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccc------cccEEEe-------eccccccceeeeccccCCceEEE
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL------DQRLIEM-------ELRSLRSLLHYSLEHKSSVTGLL 71 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~~~~h~~~v~~~~ 71 (350)
.+|. |+||+.|+.|..||-.-......+.+...+++ .+.++.- ...-.........+|.+..+.++
T Consensus 297 r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 297 RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 4565 55699999999999332222222222221111 1112111 11111223345578999999999
Q ss_pred EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
..| ..+.++|++.|+++++|+ ..++..+.....++.|+.|+|.| .++.|+..|...+.|.++..+.
T Consensus 376 ~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv---------- 441 (626)
T KOG2106|consen 376 THP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV---------- 441 (626)
T ss_pred cCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE----------
Confidence 866 567899999999999999 66777777788999999999999 9999999999999999853221
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEec-cCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
.+.....++++++|+|+| ||.|+.|+.|+||-+.. +....... .+..+|+.+.|++|+++|.+.+.|-.++.+
T Consensus 442 -~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 442 -TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred -EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 233337899999999999 99999999999998865 33333332 344899999999999999988887555544
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.75 E-value=2.1e-16 Score=132.82 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=139.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|.++|. ++||..+|.|.||+.. .........+|.+.|.+++... ++. |
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~---------------------------~~~~~k~~~aH~ggv~~L~~lr-~Gt-l 301 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKG---------------------------TNRISKQVHAHDGGVFSLCMLR-DGT-L 301 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCC---------------------------CceEEeEeeecCCceEEEEEec-Ccc-E
Confidence 57888886 6799999999999987 3445555559999999998865 554 6
Q ss_pred EEEeCCCcEEEEeCCC-----------------------------------------CceEEEEecCCceeEEEEcCCCc
Q 045370 81 VSSSLDATCKVWDLGS-----------------------------------------GILIQTQVYPQAVTAIAFHPGEQ 119 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~ 119 (350)
++|+.|+.|..||-.- +..+..+.|.+....++.+|+.+
T Consensus 302 lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 302 LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 6799999999998320 01112234667788899999999
Q ss_pred EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKK 198 (350)
Q Consensus 120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 198 (350)
.+++++.|+.+++|+-. ++. --..-..++.|+.|+|.+ ++.|...|...+.|.++...+..-.. .
T Consensus 382 q~~T~gqdk~v~lW~~~--k~~-----------wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~ 447 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWNDH--KLE-----------WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-N 447 (626)
T ss_pred heeeccCcceEEEccCC--cee-----------EEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-C
Confidence 99999999999999922 111 111234688999999999 99999999999999999666554443 8
Q ss_pred CceeEEEEEccCCeEEeeecCcccc
Q 045370 199 GVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 199 ~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
.+++.+.|+|+|.+||.|+.|..+.
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEE
Confidence 8999999999999999999886544
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=7.8e-17 Score=140.83 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=140.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC----
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG---- 76 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---- 76 (350)
+.|+|....|.+.-.|..++|||++...+ ........-|...|+++...|.+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~k------------------------vgk~~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNK------------------------VGKCSSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEecccccc------------------------ccceeeeeeccceeeeeccccccccCc
Confidence 35888888999999999999999983211 11223334566666666544411
Q ss_pred ------CcEEEEEeCCCcEEEEeCCCCc---eEEE-----------------------------------EecCCceeEE
Q 045370 77 ------TTFFVSSSLDATCKVWDLGSGI---LIQT-----------------------------------QVYPQAVTAI 112 (350)
Q Consensus 77 ------~~~l~s~~~d~~v~vwd~~~~~---~~~~-----------------------------------~~~~~~v~~~ 112 (350)
...|+||+.|++|++||+..+. ..+. ......++++
T Consensus 386 ~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~ 465 (1080)
T KOG1408|consen 386 TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRAL 465 (1080)
T ss_pred ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEE
Confidence 1348999999999999987521 1100 0011369999
Q ss_pred EEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCC
Q 045370 113 AFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTR 187 (350)
Q Consensus 113 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~ 187 (350)
+++|+|.+|++|..-|.+++|++... +....+..|...|.|+.++... |++++.|..|+|||...
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l----------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQEL----------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhh----------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 99999999999999999999999843 3334778999999999998543 99999999999999864
Q ss_pred -ceEEEEeccCCCceeEEEEEccC--CeEEeeecCc
Q 045370 188 -RVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQ 220 (350)
Q Consensus 188 -~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~ 220 (350)
..++.++.+|...|+++.|.-.| ..+++++.|.
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 55778889999999999999887 5666666653
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=7.3e-17 Score=139.13 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=140.4
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
..|+.+.+||.|.++|....... .....+.....|...|..+.|.+ ....|++++.|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDs 122 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDS 122 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEccCCc
Confidence 47899999999999998831111 01233566789999999999988 668899999999
Q ss_pred cEEEEeCCCCceEEE---EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccc-----------------ccc
Q 045370 88 TCKVWDLGSGILIQT---QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDH-----------------FIV 146 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------~~~ 146 (350)
++++||+.+..+... ++|.+.+.++||+|. ...|++|+.||.|.|||++-...... ...
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 999999999887665 679999999999995 56889999999999999985441110 000
Q ss_pred ccccceeeeccCCc----eEEEEecCCe-EEEEeC-CCcEEEEECCCceEEEEe--------ccC---CCceeEEEEEcc
Q 045370 147 GEDQHSVLKGHNGS----ITALAFSASH-LISASE-DKTVCLWDVTRRVSIRRF--------NHK---KGVVTNLVVIRQ 209 (350)
Q Consensus 147 ~~~~~~~~~~~~~~----i~~~~~~~~~-l~s~~~-dg~v~iwd~~~~~~~~~~--------~~~---~~~v~~l~~~~~ 209 (350)
....+.....|... |+.+.|-.+. ||+++. |+.|+|||++........ ..| .-.+.++.....
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 11122233344444 4445555555 898887 999999999986554332 122 225777888888
Q ss_pred CCeEEeeecCcccccc
Q 045370 210 SSLLSEVSNCQRKLKK 225 (350)
Q Consensus 210 ~~~l~~~~~~~~~~~~ 225 (350)
|.+|++.+.|+.++.+
T Consensus 283 Gt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFY 298 (720)
T ss_pred CCeEEEEecCCcEEEE
Confidence 8888877777665543
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=1.3e-15 Score=129.83 Aligned_cols=196 Identities=11% Similarity=0.110 Sum_probs=133.2
Q ss_pred CeecCCCCEEEE-EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLIS-GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+|+|+.+++ ++.|+.|++||+.+ ...+..+. +...+.+++|++ ++.+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~---------------------------~~~~~~~~-~~~~~~~~~~~~-dg~~ 128 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIET---------------------------RKVLAEIP-VGVEPEGMAVSP-DGKI 128 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCC---------------------------CeEEeEee-CCCCcceEEECC-CCCE
Confidence 468999987755 45689999999982 22222222 223457788865 6777
Q ss_pred EEEEeCCC-cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 80 FVSSSLDA-TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 80 l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+++++.++ .+.+||..++...........+.+++|+|++.+++++ ..++.|.+||+.++........... .....
T Consensus 129 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~ 205 (300)
T TIGR03866 129 VVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP---GVHPE 205 (300)
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc---ccccc
Confidence 88877765 5677899988777665555667889999999988655 4689999999987643321110000 00001
Q ss_pred CCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370 158 NGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP 229 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (350)
......++|+|++ +++.+.++.+.+||+.+++.+..+. +...+.+++|+|+|++|++++.....+.+|+..
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1124568899998 3444567789999999988876664 445789999999999998776544445555443
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=132.19 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=152.1
Q ss_pred CeecCCC-CEEEEEeCCCcEEEEeCccccccccccc--------cccccc----------cccEEEeeccccccceeeec
Q 045370 1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELM--------HHSDQL----------DQRLIEMELRSLRSLLHYSL 61 (350)
Q Consensus 1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 61 (350)
|.|+|.. ..+++.|.||+|+.-|+++...+..... ...... -+.+-.++.+..+.....+.
T Consensus 240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 4688855 6889999999999999987443322221 111111 12112223333444455667
Q ss_pred cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
-|...|.+++++|....+++|+|.|++.+|||++.-. .+..+.|...|.++.|+|.+..|++.+.|..|++||..
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 7888999999999999999999999999999998632 25557899999999999998889999999999999985
Q ss_pred ccccccccccccccceeee---ccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEE-EEE
Q 045370 137 FLLLEDHFIVGEDQHSVLK---GHNG--SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNL-VVI 207 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~---~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l-~~~ 207 (350)
-... ...+...+. .+.. ......|.|+. +++|..-..|-|+|-..++.+..+..... .|.++ .|+
T Consensus 400 ~~sa------~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 400 CISA------KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred cccc------cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 1100 111111111 1112 23456799988 88888889999999999998888653333 55554 899
Q ss_pred ccCCeEEeeecCcccccc
Q 045370 208 RQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~ 225 (350)
|-+..+++|++....+.+
T Consensus 474 P~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred ccccceeccCCccceEEE
Confidence 999866667766544443
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=127.16 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=131.9
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEEEEEeCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFFVSSSLD 86 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 86 (350)
..+|++...|.|++||.. +...+..+.++...+..+.|... .++.+.+|+.|
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD 93 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD 93 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------chhhhheecCCCCcccceEEecCCCCCeeEEeccC
Confidence 468899999999999998 57778888999999999999875 45779999999
Q ss_pred CcEEEEeCCCCceEEEEe---cC-CceeEEEEcCCCcEEEEEcc----CCeEEEEeCCccccccccccccccceeeeccC
Q 045370 87 ATCKVWDLGSGILIQTQV---YP-QAVTAIAFHPGEQLLFAGSI----DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
|+|++||++.......+. ++ .+..+++.+-.++.+++|+. +-.|.+||+|..... .......|.
T Consensus 94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~ 165 (376)
T KOG1188|consen 94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHN 165 (376)
T ss_pred CeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--------hhhhhhhcc
Confidence 999999999866554432 22 45667776667788888864 678999999964321 122456799
Q ss_pred CceEEEEecCCe---EEEEeCCCcEEEEECCCce----EEEEeccCCCceeEEEEEccC
Q 045370 159 GSITALAFSASH---LISASEDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~ 210 (350)
..|+++.|+|.. |++||.||.|.|||+.... ++..+. |...|.++.|+..+
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKK 223 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCC
Confidence 999999999987 9999999999999997542 233333 67789999999887
No 156
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=1.4e-16 Score=125.49 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=128.8
Q ss_pred eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc------------eEEE----EecCCceeEEEEcC-CCcEE
Q 045370 59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI------------LIQT----QVYPQAVTAIAFHP-GEQLL 121 (350)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~------------~~~~----~~~~~~v~~~~~~~-~~~~l 121 (350)
....|.+.|+++...+..+.++++|+.||.|.+||+++.. ++.. -.|.-.|.++.|-| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457999999999999899999999999999999997532 1101 12566799999999 66688
Q ss_pred EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCCceEEEEecc
Q 045370 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTRRVSIRRFNH 196 (350)
Q Consensus 122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~ 196 (350)
.+++-|.++++||..+......+ ..++.|++-+++|-. +|+|..|-.|++-|+.+|..-+.+.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F-----------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDF-----------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred ecccccceEEEeecccceeeEEe-----------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 88999999999999865433222 234677777888754 78888889999999999999999999
Q ss_pred CCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370 197 KKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS 230 (350)
Q Consensus 197 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (350)
|.+.|.++.|+|...+++..++.+..+++|+++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 9999999999999998776666666666665543
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.2e-15 Score=129.95 Aligned_cols=183 Identities=19% Similarity=0.254 Sum_probs=141.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 79 (350)
||||.+.+.||.+-.||.|-||++.. ...+...+. +-...|-+++|. ++..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~--------------------------~w~~~~vi~g~~drsIE~L~W~--e~~R 82 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN--------------------------NWFLEPVIHGPEDRSIESLAWA--EGGR 82 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC--------------------------CceeeEEEecCCCCceeeEEEc--cCCe
Confidence 58999999999999999999999982 111222233 345789999997 3445
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
|.+.+.+|.|.-||+.+++....+. ..+.|.+++.+|.+..++.|+.||.++.++...+...... .+.-..
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r--------~l~rq~ 154 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR--------SLMRQK 154 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe--------eccccc
Confidence 8888999999999999999888865 6678999999999999999999998888887755433221 333446
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--------cCCCceeEEEEEccCCeEEeeecCc
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--------HKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
+.|.++.|+|++ +++|+.||.|++||..++..++... ....-|+++.|-.++.++. |.+.+
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s-gDS~G 225 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS-GDSAG 225 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE-ecCCc
Confidence 899999999999 8999999999999999988777321 1223578888886665544 55443
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=6e-16 Score=129.98 Aligned_cols=171 Identities=17% Similarity=0.198 Sum_probs=136.6
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l 80 (350)
.++....|||+++..|.|.|..+.+ +.....+. +....|.-+.|++....+|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t---------------------------~~~tt~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKT---------------------------KQKTTTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred EecCCcceeEEeccCCcEEEEeccc---------------------------CccccceecCCCCeEEEeecccccceee
Confidence 4566778999999999999999883 22222222 2245566788888777889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
.+++++|.|.+||+....+...+ .|..+...|||+| +..+|++.+.|..|++||.+...... .+ ..
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l-~y 249 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RL-TY 249 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------ee-ee
Confidence 99999999999999987777664 4899999999999 45678889999999999998543322 11 23
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccC
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~ 210 (350)
..+...++|.++| |+.|+..|.|..||++. ..++..+..|...|++++|-|..
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 4578899999999 99999999999999996 56788888999999999998764
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=5.7e-16 Score=121.75 Aligned_cols=180 Identities=14% Similarity=0.250 Sum_probs=140.8
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
|-+++.++|-|-+..|||++++ ..+.....+.+|..+|..++|...+...|++.|.
T Consensus 162 dp~~igtSSiDTTCTiWdie~~------------------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETG------------------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred CcceeEeecccCeEEEEEEeec------------------------cccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 4578999999999999999931 0123445678999999999998866789999999
Q ss_pred CCcEEEEeCCCCceEEEE---ec-CCceeEEEEcCC-CcEEEEEccC-CeEEEEeCCccccccccccccccceeeeccCC
Q 045370 86 DATCKVWDLGSGILIQTQ---VY-PQAVTAIAFHPG-EQLLFAGSID-GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~---~~-~~~v~~~~~~~~-~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
||+|++||++.......+ +. ..+...++|++. -+++++-..| ..|.+.|++. ...++..+.+|.+
T Consensus 218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~---------P~tpva~L~~H~a 288 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV---------PCTPVARLRNHQA 288 (364)
T ss_pred CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC---------CCcceehhhcCcc
Confidence 999999999976543332 22 457889999984 4677776555 6899999994 5677779999999
Q ss_pred ceEEEEecCCe---EEEEeCCCcEEEEECCCce------EEEEeccCCCceeEEEEEcc-CCeEEeeecC
Q 045370 160 SITALAFSASH---LISASEDKTVCLWDVTRRV------SIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNC 219 (350)
Q Consensus 160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~ 219 (350)
.|+.++|.|.. +.+++.|..+-+||+...- ++..+. ..+.|..+.|++. +.+++.+.+.
T Consensus 289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 99999999976 9999999999999997521 222233 4568999999965 5688866654
No 160
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=2.6e-16 Score=131.05 Aligned_cols=212 Identities=14% Similarity=0.192 Sum_probs=162.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc------------cccccccEEEeeccccccceeeeccccCCce
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVT 68 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 68 (350)
+.|+.+|++|+.|+.-|.|-.+|+.+........... ...+.+..|.+-..+.+..+.++..| ..|.
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~~v~ 213 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-IRVA 213 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-Cchh
Confidence 4678899999999999999999998755443322211 11223344444444455666666554 5677
Q ss_pred EEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc
Q 045370 69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG 147 (350)
Q Consensus 69 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 147 (350)
.+.|.| ..-+|++++..|.++.-|+.+|+.+..+. ..+.+..++-+|.+..+-+|..+|+|.+|... .
T Consensus 214 rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~----------s 282 (545)
T KOG1272|consen 214 RLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN----------S 282 (545)
T ss_pred hhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC----------C
Confidence 888877 55678899999999999999999988865 45678889999999999999999999999988 3
Q ss_pred cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
.+++..+-.|.++|.++++.++| ++|++.|..++|||++....+.++.. ..+...+++|..|-+.++-+....+|..
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence 45555777999999999999999 99999999999999998877766654 4567888898777665544444555544
No 161
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.1e-15 Score=127.15 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=140.8
Q ss_pred CeecCCCCEE-EEEeCCCcEEEEeCccccccccccc--------cccccccccEEEeeccccccceeeeccc----cCCc
Q 045370 1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELM--------HHSDQLDQRLIEMELRSLRSLLHYSLEH----KSSV 67 (350)
Q Consensus 1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v 67 (350)
|..||||+|+ |||-.--.|++||+.+......... ..+......++.-..+........-..+ ...-
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G 136 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG 136 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC
Confidence 4679999975 6777889999999986443221111 1111111111111110000000000111 1233
Q ss_pred eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370 68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.+++++.++..+++ ++....|.-+++..|..+..+... +.+++|..++-..+|++|+.+|.|..||.+..........
T Consensus 137 RDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 55667666666554 445667888999999988887644 7899999999999999999999999999986543322111
Q ss_pred ccccceeeeccCC-----ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeec
Q 045370 147 GEDQHSVLKGHNG-----SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 147 ~~~~~~~~~~~~~-----~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
...+..|.+ .|+++.|+.+| +++|..+|.|.|||+++.+++..-. ...-+|..+.|.+.+..=...+-
T Consensus 216 ----~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 216 ----ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred ----ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 112333444 49999999988 9999999999999999988876554 23447888888777433333445
Q ss_pred Cccccccc
Q 045370 219 CQRKLKKD 226 (350)
Q Consensus 219 ~~~~~~~~ 226 (350)
|.+++++|
T Consensus 292 Dk~~~kiW 299 (703)
T KOG2321|consen 292 DKRILKIW 299 (703)
T ss_pred chHHhhhc
Confidence 55566655
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=119.48 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=125.3
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce----EEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeC
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL----IQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~ 135 (350)
..+..++++..|+.-+.+++.+++-|.+..|||+.++.. .+.+.|..+|..++|...+ ..|++.+.||.+++||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 457789999999998999999999999999999999733 3347899999999999865 47889999999999999
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCC-CcEEEEECCC-ceEEEEeccCCCceeEEEEEccC
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED-KTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~d-g~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~ 210 (350)
+....... +..-.....+...++|++.. +|+-..| ..|.|.|+|. ..++.++.+|.+.|..++|.|..
T Consensus 227 R~leHSTI-------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 227 RSLEHSTI-------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred cccccceE-------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence 96543221 11112224577888888765 6666555 4699999997 56788999999999999999997
Q ss_pred CeEEeeecCccccccccCCc
Q 045370 211 SLLSEVSNCQRKLKKDRMPS 230 (350)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~ 230 (350)
..-+++++|+....+|++..
T Consensus 300 ~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CceeeecCCcceEEEEeccc
Confidence 65555666655555555443
No 163
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=3.6e-15 Score=118.83 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=152.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.+|++|+..+|.+.....|.||..... ..-....++..|...|+++.|.+ ..+.|
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~------------------------~~w~~~htls~Hd~~vtgvdWap-~snrI 70 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGA------------------------DLWEPAHTLSEHDKIVTGVDWAP-KSNRI 70 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCC------------------------CCceeceehhhhCcceeEEeecC-CCCce
Confidence 379999999999999999999988721 12356678899999999999977 55679
Q ss_pred EEEeCCCcEEEEeC-CCCce---EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 81 VSSSLDATCKVWDL-GSGIL---IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 81 ~s~~~d~~v~vwd~-~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
++|+.|..-.||.. ..++. +..+.+....+++.|+|.++.|++|+....|.+|-++...-- ++.. ..-+.
T Consensus 71 vtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsK----hikkP 144 (361)
T KOG1523|consen 71 VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSK----HIKKP 144 (361)
T ss_pred eEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhh----hhCCc
Confidence 99999999999998 44443 333678999999999999999999999999999887642211 1100 12234
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECC-----C-------------ceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVT-----R-------------RVSIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
+...|+++.|+|++ |++|+.|+..|||... . |+++.++....+.+..+.|+|+|..|+-.
T Consensus 145 irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 145 IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 66889999999999 8999999999999642 1 23344444456789999999999999988
Q ss_pred ecCccccccccCCc
Q 045370 217 SNCQRKLKKDRMPS 230 (350)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (350)
+.|..+-......+
T Consensus 225 ~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGP 238 (361)
T ss_pred cCCCceEEeecCCC
Confidence 88765554443333
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=1.7e-15 Score=119.04 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=116.0
Q ss_pred cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce-EEEE------ecCCceeEEEEcC--CCcEEEEEccCCeEEE
Q 045370 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL-IQTQ------VYPQAVTAIAFHP--GEQLLFAGSIDGRIFV 132 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 132 (350)
.+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. ...+ .+....++-+|+| +++.+++.+ |+++..
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF 197 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEE
Confidence 5567999999987 666666654 89999999987655 2222 2455678889998 677777665 899999
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEc
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~ 208 (350)
||+++..... ..-..|...|..+.|+|+. |++|+.||.|+|||.|. ..++.++.+|...|+++.|+|
T Consensus 198 ~D~RT~~~~~---------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 198 WDLRTMKKNN---------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred EEccchhhhc---------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 9999644322 1334788899999999997 99999999999999986 557889999999999999999
Q ss_pred cC-CeEEeeecCccc
Q 045370 209 QS-SLLSEVSNCQRK 222 (350)
Q Consensus 209 ~~-~~l~~~~~~~~~ 222 (350)
.. +++++++.|.++
T Consensus 269 ~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAV 283 (370)
T ss_pred ccceEEEecCCCcee
Confidence 86 566666666443
No 165
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=7.6e-16 Score=130.54 Aligned_cols=194 Identities=15% Similarity=0.182 Sum_probs=142.5
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
..|+.++.||.+.|.+-. ........+|.+.+.+-.|++ +|.-|++++.||
T Consensus 76 d~~~i~s~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG 126 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSP-DGAGLLTAGEDG 126 (737)
T ss_pred ceEEEEcCCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCC-CCceeeeecCCc
Confidence 467788889999888754 556667789999999999976 677799999999
Q ss_pred cEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEe
Q 045370 88 TCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (350)
.|++|.-. |-+... .....+|.|++|.|+.+.++-+. .+.+.+=.+. ....+..++.|.+-|.++.|
T Consensus 127 ~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W 194 (737)
T KOG1524|consen 127 VIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLA----------ANSKIIRWRAHDGLVLSLSW 194 (737)
T ss_pred eEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecc----------cccceeEEeccCcEEEEeec
Confidence 99999944 433333 34567899999999877655543 3556665554 33344578899999999999
Q ss_pred cCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccccCCCCccccccc
Q 045370 167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEM 244 (350)
Q Consensus 167 ~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (350)
++.. +++|++|-..+|||.. |+.+..-..|..+|++++|.|+ ..++.++.....+. .+...-+...+++.++
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~----~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS----SPRVGSIFNLSWSADG 268 (737)
T ss_pred CccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeeeeeeec----CCCccceEEEEEcCCC
Confidence 9977 9999999999999986 6777777789999999999999 55555665533321 1112223344556665
Q ss_pred eEEe
Q 045370 245 VILL 248 (350)
Q Consensus 245 ~~~~ 248 (350)
....
T Consensus 269 TQ~a 272 (737)
T KOG1524|consen 269 TQAT 272 (737)
T ss_pred ceee
Confidence 5444
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.5e-16 Score=135.16 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=139.1
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
+.|+| |...||.++.||.|++|.+..+..... ...+...+..|.+.|.++.|+|--.+.
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------------~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------------EMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcc--------------------cCCcceeeecccceEEEEEecchhhhH
Confidence 35677 667899999999999999985433322 244556678999999999999988889
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc-
Q 045370 80 FVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH- 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~- 157 (350)
|+++++|-+|++||+.+++.... ..|.+.|..++|+|+|+.+++.+.||.|++|+.+.... +++.-.+.
T Consensus 693 La~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------pv~Eg~gpv 763 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------PVYEGKGPV 763 (1012)
T ss_pred hhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------ccccCCCCc
Confidence 99999999999999999877665 56999999999999999999999999999999986432 22222221
Q ss_pred CCceEEEEecCCe--EEEEeCC----CcEEEEECCCc--eEEEEeccCC-CceeEEEEEccCCeEEeeecCccccccc
Q 045370 158 NGSITALAFSASH--LISASED----KTVCLWDVTRR--VSIRRFNHKK-GVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~d----g~v~iwd~~~~--~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
...--.+.|.-++ +++.+.| ..|.+||..+. ..+.+..... ..+.--.+.+|...|+..+..++.++.+
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEE
Confidence 1223345666666 5554444 56888887653 3343332111 1122224667777666666666655555
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=128.23 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=134.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|+|||.-|+|++.||.|++|.-. +.+..++.....+|.|++|.|...+.++
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrs----------------------------GMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRS----------------------------GMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred ccCCCCceeeeecCCceEEEEecc----------------------------chHHHHHhhcCceeEEEEECCCCCceEE
Confidence 589999999999999999999865 5555566778899999999887777666
Q ss_pred EEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 82 SSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
+.+ +.+.+=-+.-. ++++--.|.+-|.++.|++..+.+++|+.|-..++||-. +.....-..|.-+
T Consensus 163 c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-----------G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 163 CQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-----------GANLFTSAAEEYA 229 (737)
T ss_pred ecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-----------CcccccCChhccc
Confidence 655 55555555433 445556799999999999999999999999999999976 3333455678899
Q ss_pred eEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 161 ITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
|++++|+|+. ++.++.+ ++|+ -....+.|..++||+||..+++|.+.+.++..+
T Consensus 230 ITSva~npd~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 230 ITSVAFNPEKDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeeccccceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 9999999998 6666543 4441 123467899999999999999888877666544
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=1e-15 Score=125.45 Aligned_cols=189 Identities=16% Similarity=0.249 Sum_probs=141.5
Q ss_pred eecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.|.+++. .|+||+.|..|++|-+++....... ..-.....+..|...|+++.|++ +++++
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------------~~V~y~s~Ls~H~~aVN~vRf~p-~gelL 80 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------------MKVEYLSSLSRHTRAVNVVRFSP-DGELL 80 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCc------------------eeEEEeecccCCcceeEEEEEcC-CcCee
Confidence 4666665 9999999999999998842221110 01234556788999999999966 78999
Q ss_pred EEEeCCCcEEEEeCC--------C-----C-ceE--EE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370 81 VSSSLDATCKVWDLG--------S-----G-ILI--QT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH 143 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~--------~-----~-~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 143 (350)
++|+.+|.|.+|-.. + . ..+ .. ..|...+..++|+|+++++++++.|..+++||+..+..
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--- 157 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--- 157 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee---
Confidence 999999999999876 2 1 111 11 24788999999999999999999999999999996543
Q ss_pred cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec---------c----------CC----
Q 045370 144 FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN---------H----------KK---- 198 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~---------~----------~~---- 198 (350)
...+..|...+..++|.|-. +++-+.|...+.+++...+.+..+. . |.
T Consensus 158 -------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 158 -------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred -------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 33677899999999999987 8888888878888776544332221 0 11
Q ss_pred CceeEEEEEccCCeEEeeecC
Q 045370 199 GVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 199 ~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.-...++|+|+|.+|++.+..
T Consensus 231 sFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred hhhhhcccCCCCcEEEcccce
Confidence 135678899999999977653
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.8e-15 Score=126.78 Aligned_cols=187 Identities=14% Similarity=0.206 Sum_probs=137.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|..+|.|.+|++|+.||+|+||.+. ++.++.... ..+.|.|++|+|.....+
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~---------------------------TgRcvr~~~-~d~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIA---------------------------TGRCVRTVQ-FDSEIRSVAWNPLSDLCV 457 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEee---------------------------cceEEEEEe-ecceeEEEEecCCCCcee
Confidence 3567899999999999999999999 456655543 445889999987554434
Q ss_pred EEEeCCCcEEEEeCCCC--------------------------------------ceEEEEecCCceeEEEEcCCCcEEE
Q 045370 81 VSSSLDATCKVWDLGSG--------------------------------------ILIQTQVYPQAVTAIAFHPGEQLLF 122 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~ 122 (350)
+....+..+.+-+..-| .+-..+.|...|..+.||..|.||+
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 44333443444332111 1112356888999999999999999
Q ss_pred EEccC---CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370 123 AGSID---GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK 197 (350)
Q Consensus 123 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~ 197 (350)
+...+ ..|.|+++...... .-|....+.|.++.|+|.. |++++ ...|+|||+..+.+++.+...
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ----------~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQ----------SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred EeccCCCcceEEEEeccccccc----------CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC
Confidence 97654 57888888754322 1333455789999999988 55555 558999999998888888767
Q ss_pred CCceeEEEEEccCCeEEeeecCccccccc
Q 045370 198 KGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 198 ~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
...|.+++.+|.|.-|++++.+.++++..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 77899999999999999899888776554
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=8.8e-16 Score=125.83 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=127.1
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce------EEE---E-ecCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL------IQT---Q-VYPQAVTAIAFHPGEQLLFAGSIDGRIFV 132 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------~~~---~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 132 (350)
...+|..+.|.......++||+.|..|++|.+..+.. +.. + .|...|+++.|+|+|..+++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 4577888888776556899999999999999865321 111 2 38899999999999999999999999999
Q ss_pred EeCCccccccc------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEE
Q 045370 133 SPLKFLLLEDH------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNL 204 (350)
Q Consensus 133 ~d~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 204 (350)
|-...-..... ........+.+.+|...|..++|+|++ +++++.|..+++||+..|+.+..+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 98763111000 000112234677899999999999999 9999999999999999999999999999999999
Q ss_pred EEEccCCeEEeeecCc
Q 045370 205 VVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 205 ~~~~~~~~l~~~~~~~ 220 (350)
+|.|-++++++-+.+.
T Consensus 172 awDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDR 187 (434)
T ss_pred ecchhhhhhhhhccCc
Confidence 9999999999877764
No 171
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=115.93 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=116.8
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcCCCcEEEEEc-cCCeE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRI 130 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 130 (350)
+..+.+|.+.|++++|++ +|..|+|++.|++|++|+++... +++.--.-+..+.+.|.||.+-+++.. ....+
T Consensus 79 ~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 456789999999999976 78899999999999999998642 222211223678999999988665544 45689
Q ss_pred EEEeCCccccccc-c-ccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370 131 FVSPLKFLLLEDH-F-IVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 131 ~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
++|-+........ . .........-..|...+..+-...++ +++++.|..|.+||++ |+.+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9997754322110 0 00111111223456667777666666 9999999999999999 8888888766666777888
Q ss_pred EccCCeEEeeec--Ccccccc
Q 045370 207 IRQSSLLSEVSN--CQRKLKK 225 (350)
Q Consensus 207 ~~~~~~l~~~~~--~~~~~~~ 225 (350)
||+|+++++++- |..+|..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred CCCCcEEEEecCCCCceEEEE
Confidence 899998887664 3455543
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=2.9e-14 Score=124.18 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=135.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|-|||..|+.+. +..+.+||.. .+..+..+.+|.+.|.+++|+. +|..+
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~n---------------------------dG~llqtLKgHKDtVycVAys~-dGkrF 68 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTS---------------------------DGTLLQPLKGHKDTVYCVAYAK-DGKRF 68 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCC---------------------------CcccccccccccceEEEEEEcc-CCcee
Confidence 58999999887774 4569999998 5888999999999999999966 78899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEec---------------------------------------CCceeEEEEcCCCcEE
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVY---------------------------------------PQAVTAIAFHPGEQLL 121 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~~~~~l 121 (350)
++|+.|..|.+|...-...+. +.| ...+.+++|..||.++
T Consensus 69 ASG~aDK~VI~W~~klEG~Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGILK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred ccCCCceeEEEecccccceee-eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEE
Confidence 999999999999865321111 111 1357788888899999
Q ss_pred EEEccCCeEEEEeCCccccccccccccccce--eeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCCceEEE
Q 045370 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS--VLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTRRVSIR 192 (350)
Q Consensus 122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~~~~~~ 192 (350)
+.|-.||+|.+-+-. ..+.+. .-.+...+|.+++|+|+. +++.....++.+|.+. |+.+.
T Consensus 148 alG~~nGTIsiRNk~----------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Ig 216 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN----------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIG 216 (1081)
T ss_pred EEeccCceEEeecCC----------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeec
Confidence 999999999886433 111111 222467899999999864 8888888899999886 55554
Q ss_pred EeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 193 RFNHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 193 ~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
.-..-.-...|+.+.|+|.+++.|+.+..
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCc
Confidence 33333345678999999999998877743
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=2.9e-15 Score=129.59 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=136.6
Q ss_pred ecCCCCEEEE--EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 3 FSDDGFLLIS--GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 3 ~s~dg~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|..+..++|. .+.-|.|-||++..+.+... . +.-.......|+.+.|.|-+.+.|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD----------------------g-v~p~l~Ngt~vtDl~WdPFD~~rL 643 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD----------------------G-VMPGLFNGTLVTDLHWDPFDDERL 643 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc----------------------c-cccccccCceeeecccCCCChHHe
Confidence 3444455543 34568899999884322111 1 111123557789999999898999
Q ss_pred EEEeCCCcEEEEeCCCCce-------EEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 81 VSSSLDATCKVWDLGSGIL-------IQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~-------~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
+.++.||.|++|.+..+.. ... ..|...|+++.||| ....|++++.|-+|++||+.+.. ..
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~----------~~ 713 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK----------LY 713 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh----------hh
Confidence 9999999999999876532 222 24788999999999 55789999999999999999543 33
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCC-CceeEEEEEccCCeEEeeecC
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKK-GVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~ 219 (350)
..+.+|.+.|..++|+|+| +++.+.||+|++|..+++. ++++-.+.. ..-..+.|.-+|+++++.+-+
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 4788999999999999999 9999999999999998754 444433222 234567888999998877765
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7e-15 Score=120.28 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=135.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~ 79 (350)
|.||.++++|++|+.|..+++|+++... .....+++.. -..|...|.|++|.. ++.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~---------------------~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~ 119 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELM---------------------VRKTPKPIGVMEHPHRSNIFSLEFDL-ENRF 119 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHH---------------------hhcCCCCceeccCccccceEEEEEcc-CCee
Confidence 5799999999999999999999998311 1112223322 345668999999976 5678
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCC---ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
+++|+.+++|.+.|+.+.+.+..+.|.. .|..+..+|..+.|++.+.+|.|.+||.+...... .......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~-------~~~~~AN 192 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI-------SLVLPAN 192 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC-------ceeeecC
Confidence 9999999999999999999998887665 89999999999999999999999999998533111 1112223
Q ss_pred cCCceEEEEecCCe---EEEEeCCCcEEEEECCCce-EEEEecc------CCCceeEEEEEccCCeEE
Q 045370 157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRV-SIRRFNH------KKGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~-~~~~~~~------~~~~v~~l~~~~~~~~l~ 214 (350)
.......+.|+|.. |++.+..+-+-+||.+..+ .+....+ ....-.++.|+|+|..|+
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 44567788899877 8888899999999998643 2222211 111234556777766554
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.5e-14 Score=120.35 Aligned_cols=160 Identities=22% Similarity=0.225 Sum_probs=118.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~ 79 (350)
++|+.||.+|++||.|-.+.|||.-. .+.....-.+|...|.++.|.|..+ .+
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~--------------------------~KllhsI~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFE--------------------------YKLLHSISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchh--------------------------cceeeeeecccccceeEEeeeccCCCeE
Confidence 57999999999999999999999862 1233344579999999999998654 67
Q ss_pred EEEEeCCCcEEEEeCCCCc----------eEEE-EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccc
Q 045370 80 FVSSSLDATCKVWDLGSGI----------LIQT-QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVG 147 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~----------~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 147 (350)
+++|..|..|+++|+...+ .... .-|...|..++..|++ +.+++++.||+|+.||++...........
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 8899999999999998521 1111 2377789999999988 79999999999999999964332211101
Q ss_pred cccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC
Q 045370 148 EDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT 186 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~ 186 (350)
......+...--...|+.++|.. |++|+.|-..++||.+
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 11111222222456788999876 9999999999999953
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1e-15 Score=136.09 Aligned_cols=184 Identities=24% Similarity=0.359 Sum_probs=146.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|+..|.++++|+.|..|+||.++ ...++....+|.+.|+.++.+. ++.+++
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~e---------------------------t~~~lAs~rGhs~ditdlavs~-~n~~ia 248 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSME---------------------------TARCLASCRGHSGDITDLAVSS-NNTMIA 248 (1113)
T ss_pred eeccccceEeecCccceeeeeecc---------------------------chhhhccCCCCccccchhccch-hhhhhh
Confidence 578899999999999999999988 5778888999999999999855 667899
Q ss_pred EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc--------------------
Q 045370 82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL-------------------- 140 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------- 140 (350)
+++.|..|++|.+.++.++.. .+|.+.|++++|+|-. +.+.||++++||.+-...
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 999999999999999998877 5799999999999965 667799999999871000
Q ss_pred ---------------------------------ccc--------------------cccccccceeeeccCCceEEEEec
Q 045370 141 ---------------------------------EDH--------------------FIVGEDQHSVLKGHNGSITALAFS 167 (350)
Q Consensus 141 ---------------------------------~~~--------------------~~~~~~~~~~~~~~~~~i~~~~~~ 167 (350)
... ..........+.+|...+..+.++
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 000 000111222445677888889999
Q ss_pred CCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370 168 ASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 168 ~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 217 (350)
|-. ..+++.||...|||+-.|.+++.+....+.+....||++|..++...
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence 876 77889999999999999998887764456777788999988777443
No 177
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.61 E-value=1.6e-13 Score=122.29 Aligned_cols=187 Identities=21% Similarity=0.311 Sum_probs=144.6
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS 84 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 84 (350)
=|.+++++..++.+.||+......+ ............+.|+++.- |+. =+.++.|+
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e----------------------~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs 179 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEE----------------------LYLQSTFLKVEGDFITALLH-PSTYLNKIVVGS 179 (910)
T ss_pred ecceEEEEEccCcEEEEEecccccc----------------------ccccceeeeccCCceeeEec-chhheeeEEEee
Confidence 3667777778888888877631000 00011222223333777743 422 25589999
Q ss_pred CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 85 LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
.+|.+.+|++++++.+..+. +...|+++.=+|-=..++.|..+|.|.+++++. .+.+..++...+.|+.
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~----------dkil~sFk~d~g~Vts 249 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF----------DKILMSFKQDWGRVTS 249 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc----------CcEEEEEEccccceeE
Confidence 99999999999999999975 678899999999889999999999999999994 4445566655799999
Q ss_pred EEecCCe---EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 164 LAFSASH---LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 164 ~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
+.|..|| +++|+..|.+-+||+...+.+..+. .|.+.|....|.|....+++++.| ..+..|
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~ 315 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVW 315 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEE
Confidence 9999998 8999999999999999988888776 788999999999999999988877 444444
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.8e-13 Score=121.86 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=141.4
Q ss_pred eecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cE
Q 045370 2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TF 79 (350)
Q Consensus 2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~ 79 (350)
.|+| +..+||.|..+|.|.+||+....... ....-.....|..+++.+.|..... .-
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~~~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHSEPVTAVVWLQNEHNTE 307 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCCcCeEEEEEeccCCCCc
Confidence 5677 45688999999999999998422111 0112223457899999999976322 34
Q ss_pred EEEEeCCCcEEEEeCCCCceE------EEEe-------cCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 80 FVSSSLDATCKVWDLGSGILI------QTQV-------YPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~------~~~~-------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
|++++.||.|..|+++.-... .... ....++++.|.+ +...|++|+.+|.|..-+.........
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-- 385 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-- 385 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--
Confidence 888899999999998753321 1111 234688999998 556899999999998743332111110
Q ss_pred cccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC-CceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 146 VGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT-RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
...+....+..|.++|+++.++|-+ +++++ |.+|+||... ...++..+..+...|++++|||...-++++.....
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 1112233556788999999999987 55555 9999999988 67778888777888999999999987776666666
Q ss_pred ccccccC
Q 045370 222 KLKKDRM 228 (350)
Q Consensus 222 ~~~~~~~ 228 (350)
.+.+|++
T Consensus 465 ~l~iWDL 471 (555)
T KOG1587|consen 465 NLDIWDL 471 (555)
T ss_pred ceehhhh
Confidence 6677755
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.3e-13 Score=110.60 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=117.6
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cCCceeEEEEcCCCcEEEEEc--cCCeEEEEe
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YPQAVTAIAFHPGEQLLFAGS--IDGRIFVSP 134 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d 134 (350)
.....+|.++..+ .+.|+.+-.+. |.|||+++.++++++. ++..+.++.+++.+.+++--+ ..|.|.+||
T Consensus 84 ~~fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 84 IFFPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EecCCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 3456678888773 45577766554 9999999999998864 344455666666666777533 359999999
Q ss_pred CCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCc-EEEEECCCceEEEEeccC--CCceeEEEEEcc
Q 045370 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKT-VCLWDVTRRVSIRRFNHK--KGVVTNLVVIRQ 209 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~-v~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~ 209 (350)
.. ...++..+..|.+.+.+++|+++| ||++++.|+ ||||.+.+|+.+.+|... ...|.+++|+|+
T Consensus 160 ~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 160 TI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred cc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 98 455666888999999999999999 999999886 799999999999999732 336899999999
Q ss_pred CCeEEeeecCc--cccccc
Q 045370 210 SSLLSEVSNCQ--RKLKKD 226 (350)
Q Consensus 210 ~~~l~~~~~~~--~~~~~~ 226 (350)
+++|++.++.+ .++++.
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 99999777653 455554
No 180
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.3e-14 Score=112.04 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=139.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc------ccccc------------cEEEeeccccccceee-ec
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS------DQLDQ------------RLIEMELRSLRSLLHY-SL 61 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~------------~~~~~~~~~~~~~~~~-~~ 61 (350)
++||+||+.|+|+|.|..|.+||+..+........... .+... .+..+..+ ....+.. -.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d 149 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDD 149 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCc
Confidence 58999999999999999999999987653322221110 01111 11111110 0000000 01
Q ss_pred cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
+....+.+..++...|+++++|...|.+.++|..+.+++..+.. ...|..+.++..|..|+.-+.|..|+.|+++.-.
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 11111111123455789999999999999999999999988763 3689999999999999999999999999987432
Q ss_pred cccccccccccceeeec--cCCceEEEEecCCe-EEEE--eCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeE
Q 045370 140 LEDHFIVGEDQHSVLKG--HNGSITALAFSASH-LISA--SEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLL 213 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~-l~s~--~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l 213 (350)
...... ..++...+.. ....=.+++|+.+| ++++ ..-..++||....|.+++.+.+.. .....+.|+|-..++
T Consensus 230 ~~~r~~-e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 230 DEGRDG-EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred ccCccC-CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence 221100 0011111111 12334567888888 3333 345679999999999999998877 468889999999988
Q ss_pred Eeee
Q 045370 214 SEVS 217 (350)
Q Consensus 214 ~~~~ 217 (350)
++-.
T Consensus 309 ~si~ 312 (405)
T KOG1273|consen 309 ASIA 312 (405)
T ss_pred eecc
Confidence 8653
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=3.1e-13 Score=109.90 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=141.2
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|..|...|..|+.|| .++|..+. .............|....|++ .++|
T Consensus 12 ~~Nqd~~~lsvGs~~G-yk~~~~~~---------------------------~~k~~~~~~~~~~IvEmLFSS---SLva 60 (391)
T KOG2110|consen 12 GFNQDSTLLSVGSKDG-YKIFSCSP---------------------------FEKCFSKDTEGVSIVEMLFSS---SLVA 60 (391)
T ss_pred eeccceeEEEccCCCc-eeEEecCc---------------------------hHHhhcccCCCeEEEEeeccc---ceeE
Confidence 4778888899999988 67787762 111222223334555666643 5666
Q ss_pred EEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 82 SSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 82 s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
..+.+.. +++.++..+..+..+..+.+|.++.++. +.|+++-. ..|+|||++..++.+... ....+..
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~-------t~~~n~~ 130 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIE-------TTPPNPK 130 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhh-------ccCCCcc
Confidence 6665544 9999999999999999999999999964 45555543 449999999776554321 2334566
Q ss_pred ceEEEEecCCe--EEE--EeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcccc
Q 045370 160 SITALAFSASH--LIS--ASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEK 233 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 233 (350)
.+.++.+++.+ ++- ....|.|.|||+.+.+.+..+..|.+++.+++|+++|.+||++|..+.++++...+.-.+
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 67777777765 332 234689999999999999999999999999999999999999999999999987755443
No 182
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.59 E-value=6.2e-14 Score=122.44 Aligned_cols=184 Identities=17% Similarity=0.146 Sum_probs=128.4
Q ss_pred EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cEEEEEeCC
Q 045370 9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TFFVSSSLD 86 (350)
Q Consensus 9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d 86 (350)
.++.| ....|.+||.. .......+.+|..+|+|+.|.|... .++++|+.|
T Consensus 27 ~vafG-a~~~Iav~dp~---------------------------k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD 78 (764)
T KOG1063|consen 27 LVAFG-AGPAIAVADPE---------------------------KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSD 78 (764)
T ss_pred eEEec-CCceEEEeCcc---------------------------cceeEEeccCCccceEEEEEcccccccceEEEccCC
Confidence 34444 55789999877 3445677899999999999986432 379999999
Q ss_pred CcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc-----------------------c
Q 045370 87 ATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE-----------------------D 142 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------~ 142 (350)
+.|.+|.++..........+ ....+++++.......+.+.|+.+.+||....+.. .
T Consensus 79 ~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~ 158 (764)
T KOG1063|consen 79 GRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNK 158 (764)
T ss_pred CcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCC
Confidence 99999999965544443322 35666666654444444478999999998443300 0
Q ss_pred c-----------------cccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCCce-----------
Q 045370 143 H-----------------FIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTRRV----------- 189 (350)
Q Consensus 143 ~-----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~----------- 189 (350)
. ....-..+..+.+|.+.|.+++|..-+ |+++|.|..||||.+.-+.
T Consensus 159 ~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~ 238 (764)
T KOG1063|consen 159 TFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL 238 (764)
T ss_pred cEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc
Confidence 0 000113445788999999999997533 9999999999999764221
Q ss_pred ----------EEEE----------eccCCCceeEEEEEccCCeEEeeecCc
Q 045370 190 ----------SIRR----------FNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 190 ----------~~~~----------~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.... +.+|...|.++.|+|.+..|++++.|.
T Consensus 239 t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk 289 (764)
T KOG1063|consen 239 TTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK 289 (764)
T ss_pred ccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc
Confidence 1111 237999999999999998777787774
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.7e-14 Score=110.73 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=116.5
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--e--EEE-EecCCceeEEEEcC--CCcEEEEEccCCeEEEE
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--L--IQT-QVYPQAVTAIAFHP--GEQLLFAGSIDGRIFVS 133 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~--~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~ 133 (350)
.+|.+-|.++.|.. .|..+++|+.|++|+|||.+... . ... -.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 57889999999966 67889999999999999975433 2 222 34889999999976 58899999999999999
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCC------ceEEEEec-------c
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTR------RVSIRRFN-------H 196 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~------~~~~~~~~-------~ 196 (350)
.-....... ....-.....+......|+++.|.|.. |++++.||.||||+.-. ..+..++. .
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 864221111 001112333566778899999999976 99999999999998654 33344443 3
Q ss_pred CCCceeEEEEEcc---CCeEEeeecC
Q 045370 197 KKGVVTNLVVIRQ---SSLLSEVSNC 219 (350)
Q Consensus 197 ~~~~v~~l~~~~~---~~~l~~~~~~ 219 (350)
+..+-.|+.|+|. .++|++|+.+
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDE 193 (361)
T ss_pred ccCcceEEeeccccccCceEEEEccc
Confidence 5667889999985 4678877765
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=6.9e-14 Score=118.84 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=112.9
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC--------------CceEEE---------------EecCCceeEEEE
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS--------------GILIQT---------------QVYPQAVTAIAF 114 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--------------~~~~~~---------------~~~~~~v~~~~~ 114 (350)
...|+++.|.+.+...++.+-.+|.+.++|... +..... .-..+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888899999999999997531 111110 012347889999
Q ss_pred cCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE
Q 045370 115 HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIR 192 (350)
Q Consensus 115 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~ 192 (350)
+|||++|++.+.||.++|||..+.++. ..++..-+...|++|+||| +++|++|.-|.||.+..++++.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLl----------g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELL----------GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHH----------HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 999999999999999999999865433 2455566889999999999 9999999999999999999999
Q ss_pred EeccCCCceeEEEEEc
Q 045370 193 RFNHKKGVVTNLVVIR 208 (350)
Q Consensus 193 ~~~~~~~~v~~l~~~~ 208 (350)
.-.+|...|+.|+|.|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 9999999999999996
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.59 E-value=3.2e-14 Score=124.16 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=132.0
Q ss_pred CeecCCCCEEEEEeCC-----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370 1 MVFSDDGFLLISGSDD-----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG 75 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 75 (350)
++.||+|+++||++.. -.|++|+.. .-.....+.+|.-.|+.++|+|
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~---------------------------~W~~~~~L~~HsLTVT~l~FSp- 582 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTA---------------------------NWLQVQELEGHSLTVTRLAFSP- 582 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEecc---------------------------chhhhheecccceEEEEEEECC-
Confidence 4678999999999864 468999987 3455567899999999999966
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEE-----EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQ-----TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ 150 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 150 (350)
++.+|++.+.|+++.+|......... .-.|..-|.++.|+|++.+|+++|.|..|++|......... ...
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~-----i~~ 657 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY-----ISR 657 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh-----hhh
Confidence 78999999999999999986432211 23488889999999999999999999999999987542110 000
Q ss_pred ceeeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCC-------ce--EEEE---eccCCCceeEEEEEcc
Q 045370 151 HSVLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTR-------RV--SIRR---FNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~-------~~--~~~~---~~~~~~~v~~l~~~~~ 209 (350)
. ....+...|+++++.|-. ++.|-+.|.|.+|.... +. .... ...|...|..+.|.|.
T Consensus 658 ~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 658 F-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred h-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 0 234577899999988632 68888999999998541 11 1111 1246778999999976
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=114.63 Aligned_cols=155 Identities=20% Similarity=0.281 Sum_probs=111.5
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcEEEEEe-
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTFFVSSS- 84 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~- 84 (350)
...+.+|+.||+|++||++... ......+.++. .+..+++- ......+++|.
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~-------------------------e~a~~~~~~~~~~~f~~ld~-nck~~ii~~GtE 137 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQA-------------------------ESARISWTQQSGTPFICLDL-NCKKNIIACGTE 137 (376)
T ss_pred CCeeEEeccCCeEEEEEeecch-------------------------hhhheeccCCCCCcceEeec-cCcCCeEEeccc
Confidence 4568899999999999998311 12222334444 34444443 22456666664
Q ss_pred ---CCCcEEEEeCCCCce-EEEE--ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 85 ---LDATCKVWDLGSGIL-IQTQ--VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 85 ---~d~~v~vwd~~~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
.|-.|.+||++..+. +..+ .|.+.|++++|+| +.++|++|+.||.|.+||+..... ...+...-.|
T Consensus 138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-------eDaL~~viN~ 210 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-------EDALLHVINH 210 (376)
T ss_pred cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-------hhhHHHhhcc
Confidence 366799999998766 4443 4899999999999 567999999999999999986532 2222233457
Q ss_pred CCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEe
Q 045370 158 NGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~ 194 (350)
...|.++.|..++ +.+-+..+...+|+++.+.....+
T Consensus 211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 7889999999877 888899999999999887654443
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.1e-13 Score=126.34 Aligned_cols=190 Identities=20% Similarity=0.238 Sum_probs=126.9
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
|..++++|+.||.|+||+-....-... ++..... .+-....+-.+.-.-+.|-...|.++ ++|.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~-----------eLVTaw~----~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd 1185 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKP-----------ELVTAWS----SLSDQLPGARGTGLVVDWQQQSGHLL-VTGD 1185 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCc-----------eeEEeec----cccccCccCCCCCeeeehhhhCCeEE-ecCC
Confidence 446899999999999997542110000 0000000 00000011111113345655555544 4555
Q ss_pred CCcEEEEeCCCCceEEEEec--CCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc--
Q 045370 86 DATCKVWDLGSGILIQTQVY--PQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS-- 160 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (350)
-..|+|||.....+...+.. ...++++.-+. .|+.|++|..||.|++||.+... ....+...+.|...
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------PDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------ccccceeecccCCccc
Confidence 88999999999988888653 34566665543 46899999999999999999543 22345567778777
Q ss_pred eEEEEecCCe---EEEEeCCCcEEEEECCCceEEE--EeccCC--C-ceeEEEEEccCCeEEeeec
Q 045370 161 ITALAFSASH---LISASEDKTVCLWDVTRRVSIR--RFNHKK--G-VVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~--~~~~~~--~-~v~~l~~~~~~~~l~~~~~ 218 (350)
|..+.+.+.| |++|+.||.|++||++...... ++..|- + .++++..+++...+|+|+.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 9999999877 9999999999999999742222 222222 3 5999999999999998886
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=115.83 Aligned_cols=191 Identities=31% Similarity=0.439 Sum_probs=143.8
Q ss_pred CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc-
Q 045370 1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT- 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~- 78 (350)
++|+|++.++++++. |+.+++|+.. .......+.+|...|.++.|.+ ++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~ 212 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLR---------------------------TGKPLSTLAGHTDPVSSLAFSP-DGGL 212 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcC---------------------------CCceEEeeccCCCceEEEEEcC-Ccce
Confidence 479999999999886 9999999998 3456666777999999999984 555
Q ss_pred EEEEEeCCCcEEEEeCCCCceEE-EE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQ-TQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
.+++++.|+.|++||...+.... .+ .|.... ...|+|++..+++++.|+.+++|+.+.... ......+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~ 282 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---------LLRTLSG 282 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---------EEEEEec
Confidence 56666999999999998777776 33 355554 338999998889999999999999985432 1222357
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP 229 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (350)
|...+.++.|+|++ +++++.|+.+.+||..+........ .|...+..+.|.+++..++.+...+..+..|...
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 88999999999965 7778888899999999888777665 7777899999933324555553222433335443
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=3.1e-12 Score=110.53 Aligned_cols=198 Identities=15% Similarity=0.098 Sum_probs=121.4
Q ss_pred CeecCCCCEEEEEe-CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|+||+++|++++ .++.|.+|++.... ....... ....+....+++++ ++++
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g------------------------~l~~~~~-~~~~~~p~~i~~~~-~g~~ 93 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDG------------------------ALTFAAE-SPLPGSPTHISTDH-QGRF 93 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCC------------------------ceEEeee-ecCCCCceEEEECC-CCCE
Confidence 57899999887664 58899999886100 0001111 11223456788866 5555
Q ss_pred EEEEe-CCCcEEEEeCCC-Cc---eEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccccccccccee
Q 045370 80 FVSSS-LDATCKVWDLGS-GI---LIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 80 l~s~~-~d~~v~vwd~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
+++++ .++.|.+|++.+ +. .+..+.....+..++++|+++++++++ .++.|.+||+......... ......
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~---~~~~~~ 170 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ---EPAEVT 170 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc---CCCcee
Confidence 55554 588999999974 32 223233444578889999999886655 5699999999752211100 000001
Q ss_pred eeccCCceEEEEecCCe--EEEEeC-CCcEEEEECCC--c--eEEEEeccC------CCceeEEEEEccCCeEEeeecCc
Q 045370 154 LKGHNGSITALAFSASH--LISASE-DKTVCLWDVTR--R--VSIRRFNHK------KGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~~-dg~v~iwd~~~--~--~~~~~~~~~------~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
. ........+.|+|++ +++++. ++.|.+||+.. + +.+..+..+ ......+.++|++++++++....
T Consensus 171 ~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 171 T-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred c-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 1 112346789999998 656655 89999999973 3 334444321 11234688999999999876655
Q ss_pred cccccccC
Q 045370 221 RKLKKDRM 228 (350)
Q Consensus 221 ~~~~~~~~ 228 (350)
..+.++++
T Consensus 250 ~~I~v~~i 257 (330)
T PRK11028 250 SLISVFSV 257 (330)
T ss_pred CeEEEEEE
Confidence 55555533
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.3e-13 Score=120.32 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=148.4
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TF 79 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~ 79 (350)
.||+|+++++... +..|.||... ++.++..+.+|..++..+.+.+... .+
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~---------------------------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~ 74 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTA---------------------------TGECITSLEDHTAPLTSVIVLPSSENANY 74 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecc---------------------------hHhhhhhcccccCccceeeecCCCccceE
Confidence 5899999888665 5789999998 5777788899999999999987665 56
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-------------------------------------------------------
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV------------------------------------------------------- 104 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~------------------------------------------------------- 104 (350)
+++++.||.|++||...+..+..+.
T Consensus 75 ~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 75 LIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred EEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 7799999999999986554433321
Q ss_pred -------------------------------------------------cCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370 105 -------------------------------------------------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 105 -------------------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 135 (350)
|.-.+++.+++|+++++++|..||.|.+|.-
T Consensus 155 d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 155 DFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 0024688999999999999999999999964
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 213 (350)
-... ........++-|...|+++.|+++| |++|+..|.+-+|.+.+++ -.-++.-.++|..+.++||+.+.
T Consensus 235 ~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 235 FGSS------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred cccc------cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeE
Confidence 3210 1233344788899999999999999 9999999999999999988 33345567899999999999988
Q ss_pred EeeecCcccc
Q 045370 214 SEVSNCQRKL 223 (350)
Q Consensus 214 ~~~~~~~~~~ 223 (350)
+....|..+.
T Consensus 308 sl~~~DNqI~ 317 (792)
T KOG1963|consen 308 SLVLEDNQIH 317 (792)
T ss_pred EEEecCceEE
Confidence 8777775433
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.4e-13 Score=119.49 Aligned_cols=177 Identities=16% Similarity=0.062 Sum_probs=114.7
Q ss_pred CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.+|||||++|+.++.+ ..|++||+.++ ....+....+| ...++|+| ++
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-------------------------~~~~l~~~~g~---~~~~~wSP-DG 259 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSG-------------------------ARKVVASFRGH---NGAPAFSP-DG 259 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCC-------------------------ceEEEecCCCc---cCceeECC-CC
Confidence 4799999999988754 36999998731 01122222333 33567866 66
Q ss_pred cEEEEE-eCCCcEEEE--eCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccccccccccee
Q 045370 78 TFFVSS-SLDATCKVW--DLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 78 ~~l~s~-~~d~~v~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
+.|+.+ +.+|.+.|| |+.++.......+...+....|+|+|+.|+.++ .+|...+|++..... ....
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---------~~~~ 330 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---------GASL 330 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------CeEE
Confidence 666654 568876655 666676655555666788999999999776554 578888887653211 1111
Q ss_pred eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370 154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
+ .+.. ....|+|++ ++.++.+ .+.+||+.+++.......+ ...++.|+|+|++|+.++.++.
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence 2 2332 457899998 6666655 4667999988754322222 3456789999999998876643
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.6e-14 Score=120.48 Aligned_cols=169 Identities=22% Similarity=0.257 Sum_probs=129.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+++++++..+++|+.||+|+.|++.....+. +..........+.+|++.|+.+++++ ....|
T Consensus 350 v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~L 411 (577)
T KOG0642|consen 350 VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD-----------------DSYDPSVLSGTLLGHTDAVWLLALSS-TKDRL 411 (577)
T ss_pred EEecCCceEEEeeccCceeeeeccCCCCCcc-----------------cccCcchhccceeccccceeeeeecc-cccce
Confidence 3567899999999999999999876211000 01112345567899999999999976 55679
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-------------------c----------------------------------CC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQV-------------------Y----------------------------------PQ 107 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~-------------------~----------------------------------~~ 107 (350)
++++.||+|+.|+...... ..+. | ..
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 9999999999999765433 0000 0 02
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~ 185 (350)
.+.-+.++|.+...+++..|+.|+++|..++ ..+.....|...++++++.|+| |++++.|+.+++|.+
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNKTG----------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccceEEecCCCCeeEecccCCceeccccccc----------ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 4667888999999999999999999999854 4444777899999999999999 999999999999999
Q ss_pred CCceEEEEeccCC
Q 045370 186 TRRVSIRRFNHKK 198 (350)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (350)
....++.....|.
T Consensus 561 d~k~~~~es~~~r 573 (577)
T KOG0642|consen 561 DVKTCVLESTAHR 573 (577)
T ss_pred cchheeecccccc
Confidence 8777776665553
No 193
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.9e-14 Score=121.80 Aligned_cols=182 Identities=16% Similarity=0.249 Sum_probs=143.2
Q ss_pred CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
|.|+..|.||++...+ ..|.|.++.. .....-+....+.|.++.|+|..
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK---------------------------~~sQ~PF~kskG~vq~v~FHPs~- 578 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSK---------------------------RKSQSPFRKSKGLVQRVKFHPSK- 578 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEeccc---------------------------ccccCchhhcCCceeEEEecCCC-
Confidence 5799999999987764 4678888772 22233344566788899997754
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
.+|+.++ ...|++||+....++.. +.....|..++.+|.|..|+.|+.|+.+..||+.- ..++...+..
T Consensus 579 p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl---------sskPyk~lr~ 648 (733)
T KOG0650|consen 579 PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL---------SSKPYKTLRL 648 (733)
T ss_pred ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc---------CcchhHHhhh
Confidence 4555555 47899999998766665 44567899999999999999999999999999983 5566778889
Q ss_pred cCCceEEEEecCCe--EEEEeCCCcEEEEECC------C---ceEEEEeccCCCc----eeEEEEEccCCeEEeeecCc
Q 045370 157 HNGSITALAFSASH--LISASEDKTVCLWDVT------R---RVSIRRFNHKKGV----VTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~------~---~~~~~~~~~~~~~----v~~l~~~~~~~~l~~~~~~~ 220 (350)
|...+++++|++.. +++|+.||++.||--. . --+++.+.+|... |..+.|+|...+|++++.++
T Consensus 649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence 99999999999998 8889999999998422 2 1346667777654 88899999999999888875
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=122.03 Aligned_cols=162 Identities=18% Similarity=0.134 Sum_probs=128.4
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC--CCcEEEEEccCCeEEE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP--GEQLLFAGSIDGRIFV 132 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 132 (350)
...+.+|++-|.++.|+. +|.+|++|+.|-.+.|||.-..+.++.+ +|...|.++.|-| +...+++|+.|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 346789999999999966 7899999999999999999988888875 5889999999999 5678899999999999
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEE----------EeccCCC
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIR----------RFNHKKG 199 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~ 199 (350)
+|+...+..............+..|...|..++..|++ +.++++||+|+-+|++...... .+....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99986544333333445566778899999999999888 9999999999999998733211 1111223
Q ss_pred ceeEEEEEccCC-eEEeeecC
Q 045370 200 VVTNLVVIRQSS-LLSEVSNC 219 (350)
Q Consensus 200 ~v~~l~~~~~~~-~l~~~~~~ 219 (350)
...++..+|... +|++|+.+
T Consensus 202 elk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred eeeeeeecCCCCceEEecCCC
Confidence 578899999875 56656655
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=8.8e-14 Score=118.21 Aligned_cols=153 Identities=12% Similarity=0.189 Sum_probs=106.4
Q ss_pred eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEe---eccccccceeeeccccCCceEEEEeeCCC
Q 045370 2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEM---ELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.|-|.+ ..++.+-.+|.+.+||.+..... . .+.......+..+.. .......++..+.-..+.|...+|++ ++
T Consensus 226 kWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-t-~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG 302 (636)
T KOG2394|consen 226 KWVPGSDSLFLVAHASGNLYLYDKEIVCGA-T-APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DG 302 (636)
T ss_pred EEEeCCCceEEEEEecCceEEeeccccccC-C-CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CC
Confidence 455533 46667778999999987421100 0 000111111111111 11222244445555566999999977 89
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
.+||+.+.||.++|+|..+..++..++ .-+...|++|+|||++|++|++|..|.||.+.. .+.+..-++
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----------rRVVARGqG 372 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----------RRVVARGQG 372 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----------ceEEEeccc
Confidence 999999999999999999887766643 457899999999999999999999999999883 344446678
Q ss_pred cCCceEEEEec
Q 045370 157 HNGSITALAFS 167 (350)
Q Consensus 157 ~~~~i~~~~~~ 167 (350)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999987
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=107.50 Aligned_cols=190 Identities=16% Similarity=0.178 Sum_probs=129.0
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~ 81 (350)
|..++ +|.+|..-|.|++|++. +......+. .|...|+.+...+. ..+.
T Consensus 22 fqa~~-rL~sg~~~G~V~~w~lq---------------------------t~r~~~~~r~~g~~~it~lq~~p~--d~l~ 71 (323)
T KOG0322|consen 22 FQANE-RLMSGLSVGIVKMWVLQ---------------------------TERDLPLIRLFGRLFITNLQSIPN--DSLD 71 (323)
T ss_pred hccch-hhhcccccceEEEEEee---------------------------cCccchhhhhhccceeeceeecCC--cchh
Confidence 44444 58899999999999998 344444444 66777887776553 3477
Q ss_pred EEeCCCcEEEEeCCCCceEEE--------------Ee----------------------------------------cCC
Q 045370 82 SSSLDATCKVWDLGSGILIQT--------------QV----------------------------------------YPQ 107 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~--------------~~----------------------------------------~~~ 107 (350)
+-+.|+.+.+|++.-+..+.. +. ..+
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 888888888888764221110 00 002
Q ss_pred ceeEEEEcC-CCc--EEEEEccCCeEEEEeCCccc----------cccccccccccc-----------------------
Q 045370 108 AVTAIAFHP-GEQ--LLFAGSIDGRIFVSPLKFLL----------LEDHFIVGEDQH----------------------- 151 (350)
Q Consensus 108 ~v~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~~----------------------- 151 (350)
.+.|..+.. .+. ++++|-++|.+.+||+..+. .........+++
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 344444332 222 46678889999999998852 000000000000
Q ss_pred -------------eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370 152 -------------SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 152 -------------~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
....-....|..+..-||+ +|+++.|+.||||..++.+++..+.-|.+.|.+++|+|+..+++++
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence 0111223457778888888 9999999999999999999999999999999999999999999988
Q ss_pred ecCccc
Q 045370 217 SNCQRK 222 (350)
Q Consensus 217 ~~~~~~ 222 (350)
+.|.++
T Consensus 312 skD~rI 317 (323)
T KOG0322|consen 312 SKDARI 317 (323)
T ss_pred cCCceE
Confidence 887653
No 197
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5e-13 Score=115.04 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=146.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccc--cEEEeeccccccceeeeccccCCceEEEE---eeCCCc
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQ--RLIEMELRSLRSLLHYSLEHKSSVTGLLT---ISGGTT 78 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~ 78 (350)
+|-+.|+|....||.+++||...+.......+.......+ ..|.+...... -...++.+ -+.+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~----------~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSP----------MKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccch----------HHHHhHHHHhhccCCce
Confidence 4566899999999999999998655444333322211111 11111000000 00000000 123456
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
.++-|...|.|.+|++..|+....+. |.+.|.++.++.+-..|.+++.|+.+..|+... ...++.+.
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~----------~~~~~~~~ 141 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE----------KVIIRIWK 141 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc----------ceeeeeec
Confidence 78889999999999999999888764 889999999999999999999999999999984 33444667
Q ss_pred ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc-----CCeEEeeecCccccccc
Q 045370 156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ-----SSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~~~~~~~~~~~ 226 (350)
.....+.+++++|++ +++++ +.|.+||+.+++.+..|.+|.++|+++.|..+ |.+++++..-.+.+..|
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 777889999999998 66664 58999999999999999999999999999987 78888666655555555
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=6.3e-13 Score=114.81 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=123.6
Q ss_pred CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|+|+|++|++++. ++.|.+|+++.... ........ .+.....+++++|.+..+
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----------------------~~~~~~~~-~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGI-----------------------PVAPIQII-EGLEGCHSANIDPDNRTL 140 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCC-----------------------CCCceeec-cCCCcccEeEeCCCCCEE
Confidence 578999998888775 88999999862100 00111111 222345667776644444
Q ss_pred EEEEeCCCcEEEEeCCCCceEE-------EEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCcc--ccccccccccc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQ-------TQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFL--LLEDHFIVGED 149 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~~~~~ 149 (350)
+++...++.|.+||+.+...+. ..........+.|+|++++++++.. ++.|.+|++... ........
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~--- 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL--- 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE---
Confidence 4566677999999998633221 1223445778999999999988876 899999999732 11100000
Q ss_pred cceeee---ccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCce----EEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 150 QHSVLK---GHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 150 ~~~~~~---~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.... .+......+.++|++ ++++. .++.|.+|++.... .+..+.. ......+.|+|+|++|++++..
T Consensus 218 --~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 --DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred --ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc
Confidence 0111 112234568899998 66654 47899999985432 2333332 2345688999999999988765
Q ss_pred ccccccccC
Q 045370 220 QRKLKKDRM 228 (350)
Q Consensus 220 ~~~~~~~~~ 228 (350)
...+.++.+
T Consensus 295 ~~~v~v~~~ 303 (330)
T PRK11028 295 SHHISVYEI 303 (330)
T ss_pred CCcEEEEEE
Confidence 555555543
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1e-13 Score=126.47 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=130.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l 80 (350)
+|.....+|+++|.-..|+|||... ......+ .+....|+++.....+++.+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~---------------------------E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHK---------------------------EQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEeccc---------------------------ceeEeecccCCCccceeecccccCCceE
Confidence 5666666777777789999999983 2222222 33456677777777778999
Q ss_pred EEEeCCCcEEEEeCCCCce---EEE-EecCCc--eeEEEEcCCCc-EEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 81 VSSSLDATCKVWDLGSGIL---IQT-QVYPQA--VTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~---~~~-~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
+.|..||.|++||.+.... +.. -.|... |..+.+.+.|- .|++|+.||.|++||++...... ...
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--------~~~ 1296 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--------FLT 1296 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc--------cce
Confidence 9999999999999886432 222 235555 99999998765 59999999999999999632111 112
Q ss_pred eecc---CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-------cCCCceeEEEEEccCCeEEeeecCcc
Q 045370 154 LKGH---NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-------HKKGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 154 ~~~~---~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
+..| .+..+++..++.. +|+|+. +.|.||++.. +.+..+. ...+.+.|++|+|..-++++|+ .+.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~-~Ds 1373 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS-ADS 1373 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc-CCc
Confidence 2222 2358999999988 777777 9999999874 3333222 1345789999999999999774 444
Q ss_pred ccccc
Q 045370 222 KLKKD 226 (350)
Q Consensus 222 ~~~~~ 226 (350)
.+.++
T Consensus 1374 ~V~iY 1378 (1387)
T KOG1517|consen 1374 TVSIY 1378 (1387)
T ss_pred eEEEe
Confidence 44443
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.2e-13 Score=108.93 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=131.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|++.-..+|++..|-+|++||-. ..............|.+++|-|.....|
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ks---------------------------st~pt~Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKS---------------------------STCPTKLKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccC---------------------------CCCCceecchhhcceeEEEeccCCccee
Confidence 4677766678899999999999876 2122222233457899999988888888
Q ss_pred EEEeCCCcEEEEeCCCC----ce--------EEEEe--cCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccc
Q 045370 81 VSSSLDATCKVWDLGSG----IL--------IQTQV--YPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~----~~--------~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~ 145 (350)
+.|+..| |.+|..... .. ...+. ...+|+++.|++||..+++++. |..|.+||..++...
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~---- 231 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI---- 231 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc----
Confidence 8888765 999986531 11 11122 2357999999999999999875 589999999865322
Q ss_pred cccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC-CceEEEEeccCCCceeEEEEEccCCeEEeee-cCcc
Q 045370 146 VGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT-RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS-NCQR 221 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~~~~ 221 (350)
.......+.++-+.|+|++ |+++.-|+..++|... +....+-.. ..+.|...+|+|+|++|+-++ ...+
T Consensus 232 ------pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 232 ------PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred ------cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCce
Confidence 1222344678899999999 8899999999999544 444433333 345899999999998665444 4444
Q ss_pred cccc
Q 045370 222 KLKK 225 (350)
Q Consensus 222 ~~~~ 225 (350)
+..+
T Consensus 305 lysl 308 (445)
T KOG2139|consen 305 LYSL 308 (445)
T ss_pred EEEE
Confidence 4444
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.8e-12 Score=103.55 Aligned_cols=188 Identities=13% Similarity=0.214 Sum_probs=119.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+.|...++.|..+| .+||+.+........ ......-.+..+.|- .+++
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r-------------------------~~~~~G~~~veMLfR---~N~l 61 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-------------------------QFIDGGFKIVEMLFR---SNYL 61 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhh-------------------------ccccCchhhhhHhhh---hceE
Confidence 47899999999887666 899998831111100 000111222222231 1222
Q ss_pred E-EEeCC------CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc-ccccc---------
Q 045370 81 V-SSSLD------ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL-LLEDH--------- 143 (350)
Q Consensus 81 ~-s~~~d------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~--------- 143 (350)
+ .||.+ ..|.|||=....++..+....+|.++.+.++ .|++.- .+.|++|..... +....
T Consensus 62 aLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 62 ALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred EEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc
Confidence 2 33322 3577888666667777777777777777543 333332 456666665421 10000
Q ss_pred --------------------------cccccc--cceeeeccCCceEEEEecCCe--EEEEeCCCc-EEEEECCCceEEE
Q 045370 144 --------------------------FIVGED--QHSVLKGHNGSITALAFSASH--LISASEDKT-VCLWDVTRRVSIR 192 (350)
Q Consensus 144 --------------------------~~~~~~--~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~-v~iwd~~~~~~~~ 192 (350)
...... ....+.+|...|.|++.+-+| +||+|..|+ |||||..+|..+.
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 000001 224678899999999999999 999999987 7999999999999
Q ss_pred Eecc--CCCceeEEEEEccCCeEEeeecCc
Q 045370 193 RFNH--KKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 193 ~~~~--~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
++.. ....|.+++|||+..+|+++|..+
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 9863 345799999999999999777654
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.5e-12 Score=102.54 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=84.4
Q ss_pred ccCCceEEEEeeCCCcEEE-EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCCcc
Q 045370 63 HKSSVTGLLTISGGTTFFV-SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFL 138 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 138 (350)
..++|.+++|+|.+..+++ .|..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.|.+||.+..
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4557999999875444433 34467899999997 55565554 467889999999999999864 467999999843
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEe
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~ 194 (350)
+.. ... +...++.++|+|+| ++++.. |..++||+.. |+.+...
T Consensus 136 ~~i----------~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 136 KKI----------STF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEe----------ecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 322 122 22357899999999 666553 7889999985 6666554
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-12 Score=100.19 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=120.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
...|..+-++.++.|+.++-||++ .+...+.+.+|++.|.+++--.. ...++
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE---------------------------~G~i~r~~rGHtDYvH~vv~R~~-~~qil 172 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLE---------------------------DGRIQREYRGHTDYVHSVVGRNA-NGQIL 172 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEec---------------------------CCEEEEEEcCCcceeeeeeeccc-Cccee
Confidence 356766667777799999999999 68889999999999999987443 34589
Q ss_pred EEeCCCcEEEEeCCCCceEEEEe---cC--------CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370 82 SSSLDATCKVWDLGSGILIQTQV---YP--------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ 150 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~---~~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 150 (350)
+|+.||++++||.++++.+..+. ++ ..|.+++. +..++++|+ ...+.+|.++..+...
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~-------- 241 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTC-------- 241 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceE--------
Confidence 99999999999999999888754 22 22444444 566887776 5679999999644322
Q ss_pred ceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370 151 HSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 209 (350)
.+ ..+.++..+.|..+.++++++.+.|.-|.+. |..-..+.......++..|+..
T Consensus 242 --vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 242 --VF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTS 296 (325)
T ss_pred --EE-ecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCC
Confidence 22 3446788889998888888988899999875 4444444433344555555544
No 204
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=2.6e-12 Score=114.34 Aligned_cols=186 Identities=30% Similarity=0.428 Sum_probs=142.1
Q ss_pred cCCCC-EEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 4 SDDGF-LLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 4 s~dg~-~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
++++. +++..+. |+.+.+|+... .......+..|...|..+.|.+ ++..++
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 171 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST--------------------------PGKLIRTLEGHSESVTSLAFSP-DGKLLA 171 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC--------------------------CCeEEEEEecCcccEEEEEECC-CCCEEE
Confidence 56776 5555444 99999999881 1466677889999999999977 455777
Q ss_pred EEeC-CCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccce-eeecc
Q 045370 82 SSSL-DATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS-VLKGH 157 (350)
Q Consensus 82 s~~~-d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~ 157 (350)
+++. |+.+++|++..+..+..+. |...+.+++|+|++. .+++++.|+.|.+||...+. ... .+.+|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----------~~~~~~~~~ 241 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----------LLRSTLSGH 241 (466)
T ss_pred ecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----------EEeeecCCC
Confidence 7775 9999999999877777655 788999999999998 55555899999999777322 222 45667
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceE-EEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVS-IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM 228 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~ 228 (350)
.... ...|+|++ +++++.|+.+++||+..... +..+..|...+.++.|+|++..+++++.+ ..+..|+.
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~~~~~~~ 313 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLWDL 313 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-CcEEEEEc
Confidence 6664 33888887 77899999999999987654 44446678899999999988888887777 44555533
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=113.97 Aligned_cols=207 Identities=11% Similarity=0.136 Sum_probs=137.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc-------cccccccEEEeecccc---ccceeeec--cccCCce
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH-------SDQLDQRLIEMELRSL---RSLLHYSL--EHKSSVT 68 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~--~h~~~v~ 68 (350)
++||.||+++|+|+.|..|.+|+-.-.+.. ...+. ..+....+........ ...-.... .....+.
T Consensus 59 VAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~ 136 (1081)
T KOG1538|consen 59 VAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII 136 (1081)
T ss_pred EEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence 589999999999999999999986521110 00000 0011111111000000 00000111 2345677
Q ss_pred EEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCC-----cEEEEEccCCeEEEEeCCcccc
Q 045370 69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGE-----QLLFAGSIDGRIFVSPLKFLLL 140 (350)
Q Consensus 69 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~ 140 (350)
+++|.. +|.+++.|-.+|+|.+-+-........-. ...+|.+++|+|.. ..+++.....++.+|.+.....
T Consensus 137 ~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 137 CCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred EeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 888854 88999999999999998754333333322 45689999999953 4678888888888887763221
Q ss_pred ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
. .-..-.-...|+.+.++| ++.|+.|+.+++| .+.|-.+.++......|+.++..|+++.++.|+.
T Consensus 216 g-----------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 216 G-----------KDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred c-----------ccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 1 111222345689999999 8889999999999 5668888888777889999999999999999998
Q ss_pred Cccc
Q 045370 219 CQRK 222 (350)
Q Consensus 219 ~~~~ 222 (350)
|+.+
T Consensus 284 DGTi 287 (1081)
T KOG1538|consen 284 DGTI 287 (1081)
T ss_pred cCee
Confidence 8754
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=107.15 Aligned_cols=149 Identities=25% Similarity=0.362 Sum_probs=112.6
Q ss_pred EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370 9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT 88 (350)
Q Consensus 9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 88 (350)
+|+.|-++|.|.+||+...... + +.....+.......|..+|.++.|.+. ...=++|+.+..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~---------------~--~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dk 228 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKI---------------I--QLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDK 228 (323)
T ss_pred EEEEeccCCeEEEEEccCCcee---------------e--ccccccccccchhhccCcceeeeechh-hcCCcCCCcccc
Confidence 4667888999999999842111 0 111122444556789999999999753 333467888888
Q ss_pred EEEEeCCCC--ceEEE--Ee-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370 89 CKVWDLGSG--ILIQT--QV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163 (350)
Q Consensus 89 v~vwd~~~~--~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (350)
+..|.++.. .+... +. ....+..+..-||++.+++++.|+.|++|..+ ...+...++.|.+.|++
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr----------tl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR----------TLNPLAVLKYHSAGVNA 298 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec----------cCCchhhhhhhhcceeE
Confidence 999988743 22211 22 23458889999999999999999999999999 45566688999999999
Q ss_pred EEecCCe--EEEEeCCCcEEEEEC
Q 045370 164 LAFSASH--LISASEDKTVCLWDV 185 (350)
Q Consensus 164 ~~~~~~~--l~s~~~dg~v~iwd~ 185 (350)
++|+|+. +|+++.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 9999995 999999999999986
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=6.8e-13 Score=106.03 Aligned_cols=195 Identities=17% Similarity=0.150 Sum_probs=146.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|+|+|..+.|++|+.|..-+||.... ...-.+...+..++..++++.|.| ..+.|
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~------------------------~~~WkptlvLlRiNrAAt~V~WsP-~enkF 115 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPS------------------------GGTWKPTLVLLRINRAATCVKWSP-KENKF 115 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCC------------------------CCeeccceeEEEeccceeeEeecC-cCceE
Confidence 57999999999999999999998731 112344556678999999999977 56779
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc--------cccc
Q 045370 81 VSSSLDATCKVWDLGSGILIQT-----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--------FIVG 147 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~ 147 (350)
++|+..+.|.||-++...--.. .++...|.++.|+|++-++++|+.|+..++|..--...... ...-
T Consensus 116 AVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PF 195 (361)
T KOG1523|consen 116 AVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPF 195 (361)
T ss_pred EeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence 9999999999999886553322 34667899999999999999999999999987543222211 1111
Q ss_pred cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
+..+..+....+.+..+.|+|+| |+-.+.|+.+.+-|..... .+..+....-|..++.|..+...+++|.++.
T Consensus 196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~ 271 (361)
T KOG1523|consen 196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG 271 (361)
T ss_pred HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence 22333444567899999999999 9999999999999988764 3444443347889999988888877665544
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.7e-12 Score=105.28 Aligned_cols=189 Identities=12% Similarity=0.108 Sum_probs=145.7
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC-
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD- 86 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d- 86 (350)
..|++|-.+|.+.+|....+... ...+..+.. ...+..+.-.+....++++|+..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~ 171 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKEN 171 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc-----------------------cccceeeec-CCceeeeccCCCCCceEecCchhc
Confidence 36778888999999988732111 111122222 24455555556666788889999
Q ss_pred -CcEEEEeCCCCceEEEEe----------cCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 87 -ATCKVWDLGSGILIQTQV----------YPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 87 -~~v~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
..+++||+.+.+.+..-+ .+-.++++.|-+. ...|++++.-+.+++||.+. ...++..
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---------qRRPV~~ 242 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH---------QRRPVAQ 242 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc---------cCcceeE
Confidence 889999999886665522 2335788999887 88999999999999999984 5667778
Q ss_pred eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370 154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS 230 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (350)
+..-..+++++...|++ +++|..-|.+..||++.+..+.. +.+..+.++++..+|.++++++++- ++.+++++...
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt 321 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT 321 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence 88888999999999998 99999999999999999998887 7888999999999999999996554 45666665544
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.4e-12 Score=113.33 Aligned_cols=178 Identities=15% Similarity=0.064 Sum_probs=114.9
Q ss_pred CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.+|||||+.|+..+.+ ..|.+||+.+ +.. ..+..+.+...+..|+|.+.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~---------------------------g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLAT---------------------------GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCC---------------------------CCE-EEeccCCCCccCceECCCCC
Confidence 3699999999987743 4699999872 211 12222333445677866444
Q ss_pred cEEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CCe--EEEEeCCccccccccccccccce
Q 045370 78 TFFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGR--IFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 78 ~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
.++++.+.+| .|.+||+.++.......+.......+|+|+|+.|+.++. +|. |+++|+..+.. .
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-----------~ 329 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-----------E 329 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-----------E
Confidence 4445666666 599999998876554455555678899999998877653 444 66666653321 1
Q ss_pred eeeccCCceEEEEecCCe--EEEEeCC-C--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 153 VLKGHNGSITALAFSASH--LISASED-K--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+..+......++|+|++ ++..+.+ + .|.+||+.+++.. .+. +........|+|+|++++..+..
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence 222233344568999999 5544333 2 6999999887754 343 22345677999999988866654
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.49 E-value=8.8e-13 Score=117.51 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=135.7
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
.-+++++.||.|+.|+++....+....... ..............++++.|.+.+...|+.|+.+|
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~---------------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLE---------------SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccc---------------cccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 458899999999999887322211111000 00001111233457888999888889999999999
Q ss_pred cEEEEeCC---CCc------eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 88 TCKVWDLG---SGI------LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 88 ~v~vwd~~---~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
.|..-+-. ... ......|.++|+++.++|=+..++..+.|..+++|.-.. ...++..+..+.
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---------~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---------IASPLLSLDSSP 441 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---------CCCcchhhhhcc
Confidence 98773332 222 111234889999999999776666555599999998762 344455666777
Q ss_pred CceEEEEecCCe---EEEEeCCCcEEEEECCC--ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 159 GSITALAFSASH---LISASEDKTVCLWDVTR--RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
..+++++|||.. |+++..||.|.+||+.. ..++.+...+....+.+.|+++|++|++|...+.+.
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 889999999987 99999999999999975 345555555567788888999999999888777554
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.6e-12 Score=111.74 Aligned_cols=178 Identities=13% Similarity=0.026 Sum_probs=113.7
Q ss_pred CeecCCCCEEEEEeC---CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSD---DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.+|||||+.|+..+. +..|.+|++.+ +. ...+....+.+....|+| ++
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~---------------------------G~-~~~l~~~~~~~~~~~~SP-DG 254 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLAN---------------------------GA-VRQVASFPRHNGAPAFSP-DG 254 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCC---------------------------CC-eEEccCCCCCcCCeEECC-CC
Confidence 379999999886543 45788888872 21 111112223344577866 55
Q ss_pred cEEE-EEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-CeEEEE--eCCccccccccccccccc
Q 045370 78 TFFV-SSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-GRIFVS--PLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 78 ~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~~ 151 (350)
..|+ +.+.+| .|.+||+.++.......+...+....|+|+|+.|+..+.+ +...+| |+..+. .
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----------~ 323 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----------P 323 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----------e
Confidence 5555 445555 4889999988776665555678899999999988766643 444444 554321 1
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeC-C--CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 152 SVLKGHNGSITALAFSASH--LISASE-D--KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
..+..+........|+|++ ++..+. + ..|++||+.++... .+.. ........|+|||++|+.++.++
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCC
Confidence 1233334455678999998 554443 3 35889999887643 3332 12345678999999999887664
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=3.6e-12 Score=100.31 Aligned_cols=117 Identities=14% Similarity=0.245 Sum_probs=84.6
Q ss_pred cEEEEeCCC-CceEEE--EecCCceeEEEEcCCCcEEEEE--ccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370 88 TCKVWDLGS-GILIQT--QVYPQAVTAIAFHPGEQLLFAG--SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162 (350)
Q Consensus 88 ~v~vwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (350)
...+|.++. +..... +...++|.+++|+|+|+.|++. ..++.|.+||++. .. ...-+...++
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----------~~--i~~~~~~~~n 104 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----------KK--IFSFGTQPRN 104 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----------cE--eEeecCCCce
Confidence 355555532 223333 3345679999999999987655 3567999999962 11 1222356788
Q ss_pred EEEecCCe--EEEEeC---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 163 ALAFSASH--LISASE---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 163 ~~~~~~~~--l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+.|+|+| +++++. .|.|.+||.++.+.+.... | ..++.++|+|+|++|+++...
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence 99999999 666653 4679999999999998876 3 347899999999999987754
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=9e-12 Score=111.45 Aligned_cols=178 Identities=11% Similarity=0.027 Sum_probs=117.9
Q ss_pred CeecCCCCEEEEEeC---CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSD---DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.+|||||+.|+..+. +..|.+||+.+ +. ...+..+.+.+....|+|.+.
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------------g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLET---------------------------GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCC---------------------------Cc-EEEeecCCCcccCcEECCCCC
Confidence 369999999888764 46899999872 22 222334555667778876444
Q ss_pred cEEEEEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370 78 TFFVSSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 78 ~~l~s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
.++++.+.++. |.+||+.++.......+........|+|+|+.|+..+. +| .|+++|+..+.. .
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----------~ 327 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----------R 327 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----------E
Confidence 44556666665 77779888876655555566778999999998887663 33 677778663221 1
Q ss_pred eeeccCCceEEEEecCCe--EEEEeCC---CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 153 VLKGHNGSITALAFSASH--LISASED---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+..+...+....|+|++ ++..+.+ ..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 333334556778899999 5554432 3688899865543 3333 22356788999999988766543
No 214
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.47 E-value=3.6e-12 Score=102.28 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=117.6
Q ss_pred eccccCCceEEEEeeC----CCcEEEEEeCCCcEEEEeCCCCc---eEEEEe---cCCceeEEEEcCC----CcEEEEEc
Q 045370 60 SLEHKSSVTGLLTISG----GTTFFVSSSLDATCKVWDLGSGI---LIQTQV---YPQAVTAIAFHPG----EQLLFAGS 125 (350)
Q Consensus 60 ~~~h~~~v~~~~~~~~----~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~---~~~~v~~~~~~~~----~~~l~~~~ 125 (350)
...|+.+|.+++|++- ....+++.+ ...+.+|...... .++... ++.....++|+-+ ..++++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3578899999999742 235566666 4568888866432 333322 5566778888753 34788888
Q ss_pred cCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec---cCCC
Q 045370 126 IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN---HKKG 199 (350)
Q Consensus 126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~ 199 (350)
.-|.|++.|+.+.. ....+.+|...|+.+.++|.. ++++|.|..|++|++++..++..+. +|..
T Consensus 113 ~~GvIrVid~~~~~----------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ----------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred ceeEEEEEecchhh----------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 99999999998543 334788999999999999987 9999999999999999999998874 6889
Q ss_pred ceeEEEEEccCCeEEeeecC
Q 045370 200 VVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 200 ~v~~l~~~~~~~~l~~~~~~ 219 (350)
.|.++.|+++|.++++++-|
T Consensus 183 eVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred cEEEEEEcCCCCeeeccCCc
Confidence 99999999999999977766
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3e-12 Score=109.91 Aligned_cols=159 Identities=12% Similarity=0.184 Sum_probs=122.7
Q ss_pred cccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------cCC-----ceeEEEEcCCCcE
Q 045370 53 LRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-------YPQ-----AVTAIAFHPGEQL 120 (350)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------~~~-----~v~~~~~~~~~~~ 120 (350)
.+..+..+....+.+++|..++. ..+|++|+.+|.|.+||.++......+. +++ .|+++.|+.+|-.
T Consensus 164 qGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 164 QGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH 242 (703)
T ss_pred ccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee
Confidence 45566666667789999988764 4678899999999999999877666543 222 3999999999999
Q ss_pred EEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHK 197 (350)
Q Consensus 121 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~ 197 (350)
+++|+.+|.+.+||++.... .+..-++..-+|..+.|.+.+ -+.......++|||-.+|+....+..
T Consensus 243 ~aVGts~G~v~iyDLRa~~p---------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp- 312 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASKP---------LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP- 312 (703)
T ss_pred EEeeccCCcEEEEEcccCCc---------eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-
Confidence 99999999999999996432 222333456789999998764 33344456899999999999998874
Q ss_pred CCceeEEEEEccCCeEEeeecCccc
Q 045370 198 KGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 198 ~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
...+..+|+-|++-+++++-.+..+
T Consensus 313 t~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 313 TSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred cCCcCceeeecCCceEEEecCCCcc
Confidence 5569999999999988877766433
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.2e-11 Score=110.24 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=111.6
Q ss_pred CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.+|||||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+....|+|.+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------------g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------------GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------------CCE-EEeecCCCCccceEECCCCC
Confidence 3799999999887643 3599999872 222 12222334456778876444
Q ss_pred cEEEEEeCCCcEEEEeC--CCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceee
Q 045370 78 TFFVSSSLDATCKVWDL--GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
.++++.+.+|...+|.+ ..+.......+........|+|||+.|+..+. +|...+|.+.... .....+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------g~~~~l 323 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------GAAQRV 323 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------CceEEE
Confidence 44456778888776654 44443333334445667889999998876553 4666666553210 011122
Q ss_pred eccCCceEEEEecCCe--EEEEeCCC---cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 155 KGHNGSITALAFSASH--LISASEDK---TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~--l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
..+........|+|++ ++..+.++ .|++||+.+++... +.. ........|+|+|+.|+.++.+.
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecC
Confidence 2222334467899999 55555443 69999998876543 332 23346789999999988777653
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3e-12 Score=104.10 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=134.2
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCcccc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLL 140 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 140 (350)
.-.+..++|++ .-..++++..|-.|++||-.. +....++ ....|+|++|-|.+. .|++|+ .+.|.+|.......
T Consensus 98 ~~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccc
Confidence 34567788866 445578899999999999776 4444444 456799999999654 566666 45688998764332
Q ss_pred cccc----ccccccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370 141 EDHF----IVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 141 ~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 213 (350)
.... ......+....+| .+|++|+|++++ +++++ .|..|.|||..++..+.-.....+.++-+.||||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 2211 0111222334455 789999999999 77777 46789999999988776654456788999999999998
Q ss_pred EeeecCccccccc---------cCCccccCCCCccccccceEEeeccccCCCCcccccccc
Q 045370 214 SEVSNCQRKLKKD---------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRR 265 (350)
Q Consensus 214 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 265 (350)
+++.-| .++++| .+......++...+++.+.+++..+.++ ....++.|..
T Consensus 254 faAt~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~ 312 (445)
T KOG2139|consen 254 FAATCD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDG 312 (445)
T ss_pred EEeccc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecC
Confidence 866554 333333 3444445788888999999988887663 2333455443
No 218
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=3.2e-11 Score=107.79 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=116.8
Q ss_pred eecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 2 VFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 2 ~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
+|||||++|+.++.+ ..|++||+.+ +. ...+..+...+.++.|++.+..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------------g~-~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------------GQ-REKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------------CC-EEEeecCCCCccceEECCCCCE
Confidence 689999999887654 4799999872 21 1222334455667788664444
Q ss_pred EEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCcccccccccccccccee
Q 045370 79 FFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 79 ~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
++++.+.++ .|.+||+.++.......+........|+|+++.|+..+. ++ .|+++|+..+. ...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----------~~~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----------VRR 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------EEE
Confidence 445555554 588899988766554445555567789999998876554 33 57777776432 113
Q ss_pred eeccCCceEEEEecCCe--EEEEeCCC---cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370 154 LKGHNGSITALAFSASH--LISASEDK---TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
+..+...+..+.|+|++ ++.++.++ .|.+||+.++... .+... .......|+|+++.|+.++.++
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 33345567788999998 66666655 7899999876543 23222 2345668999999888776653
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=6.2e-13 Score=111.25 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=133.7
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|-|.--+|++++..|.++--|+. .+..+..+....+.+..+.-+| -+..+-
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS---------------------------~GklVa~~~t~~G~~~vm~qNP-~NaVih 267 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVS---------------------------TGKLVASIRTGAGRTDVMKQNP-YNAVIH 267 (545)
T ss_pred cccchhheeeecccCCceEEEeec---------------------------hhhhhHHHHccCCccchhhcCC-ccceEE
Confidence 456666677777777777777777 5777777777778888887766 456788
Q ss_pred EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
+|...|+|.+|......++.. +.|.++|.+++++++|+++++.+.|..++|||++..... .++.. .-+
T Consensus 268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql----------~t~~t-p~~ 336 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL----------HTYRT-PHP 336 (545)
T ss_pred EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc----------ceeec-CCC
Confidence 999999999999998887665 679999999999999999999999999999999965322 12222 346
Q ss_pred eEEEEecCCeEEEEeCCCcEEEEE-CCCce--EEEEec--cCCCceeEEEEEccCCeEEeeecC
Q 045370 161 ITALAFSASHLISASEDKTVCLWD-VTRRV--SIRRFN--HKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 161 i~~~~~~~~~l~s~~~dg~v~iwd-~~~~~--~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
...+++|..++++.+....|.||- .-.+. .-..+- ...++|..+.|.|-...|..|-..
T Consensus 337 a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 337 ASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred ccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence 678899999977777777899994 32221 111111 224589999999988877755444
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=7.1e-12 Score=111.77 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=99.7
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFV 132 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 132 (350)
...+..|...+.+..|+| +++.++.++.+ ..|.+||+.+++........+....++|+|||+.|+.++ .+|.+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 445567788899999977 66667766543 369999999886544433444556789999999888764 6776655
Q ss_pred E--eCCccccccccccccccceeeeccCCceEEEEecCCe--EEE-EeCCCcEEEEECCCc-eEEEEeccCCCceeEEEE
Q 045370 133 S--PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS-ASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 133 ~--d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s-~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~ 206 (350)
| |+..+ ....+..+...+....|+|++ |+. +..+|...||++... .....+ .+.+ ....|
T Consensus 275 y~~d~~~~-----------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~ 340 (429)
T PRK01742 275 YVMGANGG-----------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQI 340 (429)
T ss_pred EEEECCCC-----------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccC
Confidence 5 54422 123455666778899999998 454 446788888876432 222223 2333 45789
Q ss_pred EccCCeEEeeecC
Q 045370 207 IRQSSLLSEVSNC 219 (350)
Q Consensus 207 ~~~~~~l~~~~~~ 219 (350)
+|+|+.|+.++.+
T Consensus 341 SpDG~~ia~~~~~ 353 (429)
T PRK01742 341 SADGKTLVMINGD 353 (429)
T ss_pred CCCCCEEEEEcCC
Confidence 9999998877654
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.6e-12 Score=106.74 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=142.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc-------------------cccEE--Eeeccccccceee
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL-------------------DQRLI--EMELRSLRSLLHY 59 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~~~~ 59 (350)
|.|...|..|++||.|..|.+||+...........++.... ++++- .............
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 46888999999999999999999987554443333332211 11111 1111111222445
Q ss_pred eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cC-----------------------------
Q 045370 60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YP----------------------------- 106 (350)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~----------------------------- 106 (350)
+..|.++|.-++.-|....-|.+++.|+.+.-.|++++.....+. ..
T Consensus 228 l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R 307 (559)
T KOG1334|consen 228 LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR 307 (559)
T ss_pred cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence 677889999888888777788899999998888887653222211 11
Q ss_pred -----------------------------CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc--cccc-eee
Q 045370 107 -----------------------------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG--EDQH-SVL 154 (350)
Q Consensus 107 -----------------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~-~~~ 154 (350)
-.|++++|+.++.-+++.-.|-.|+++.-..+......... ...+ +.+
T Consensus 308 vYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 308 VYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred hhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 13556666655555555555556666633322211111111 1111 236
Q ss_pred eccCC--ceEEEEec-CCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--cccc
Q 045370 155 KGHNG--SITALAFS-ASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKL 223 (350)
Q Consensus 155 ~~~~~--~i~~~~~~-~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~ 223 (350)
++|.. .|.++-|- |.. +++|+.-|.|.||+-.+++.+.-+.+-...|.||.-+|.-.+||+++-+ .++|
T Consensus 388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 77754 57777765 443 8888888999999999999999888777799999999999999966644 4444
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.38 E-value=5e-11 Score=110.95 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=125.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS 83 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 83 (350)
++++.+|+|||.||+|++||........ .......++..-...+.++..+. +++.+|.+
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------GSARSELTYSPEGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCc--------------------ceeeeeEEEeccCCceEEEEecc-CCCeEEEE
Confidence 4556999999999999999988321110 01112222233456777777766 56778999
Q ss_pred eCCCcEEEEeCCCCce-------EEEE--ecCCcee-EEEEcC-CCc-EEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 84 SLDATCKVWDLGSGIL-------IQTQ--VYPQAVT-AIAFHP-GEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 84 ~~d~~v~vwd~~~~~~-------~~~~--~~~~~v~-~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
+.||.|++.+++.... .... ...+.+. .-+|.. .+. .++.+...+.|..||.+........
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------- 1189 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------- 1189 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-------
Confidence 9999999999886211 1111 1223333 333433 233 6777888899999999965432211
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCC---eEEeeec
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSS---LLSEVSN 218 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~---~l~~~~~ 218 (350)
......+.|++++.+|.+ ++.|+..|.+-+||+|-+.++..+. ++..++..+..+|..+ ..++++.
T Consensus 1190 -k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 -KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred -hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 222345789999999998 9999999999999999999888875 3457888888887643 4444444
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-11 Score=115.33 Aligned_cols=165 Identities=24% Similarity=0.270 Sum_probs=120.9
Q ss_pred ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEEe-cCCceeEEEEcCCCcEEEEEc
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-------ILIQTQV-YPQAVTAIAFHPGEQLLFAGS 125 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 125 (350)
+..+..+..|...+..++.+++++.+|+|||.||+|++|+.+.- +...++. ....+.++...+.++.+++++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 56777888999999999999988899999999999999998641 1122233 567899999999999999999
Q ss_pred cCCeEEEEeCCccccccccccccccceeeecc-CCceEEE-EecCC----eEEEEeCCCcEEEEECCCceEEEEec--cC
Q 045370 126 IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH-NGSITAL-AFSAS----HLISASEDKTVCLWDVTRRVSIRRFN--HK 197 (350)
Q Consensus 126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~-~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~--~~ 197 (350)
.||.|.+.++........ .....+....+ .+.+..| ++... .++.+...+.|..||++....+.+++ ..
T Consensus 1118 ~DG~v~~~~id~~~~~~~---~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKR---VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred CCCeEEEEEccccccccc---eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 999999999885321111 11111111111 2233333 34322 27778888999999999887776664 34
Q ss_pred CCceeEEEEEccCCeEEeeecCcc
Q 045370 198 KGVVTNLVVIRQSSLLSEVSNCQR 221 (350)
Q Consensus 198 ~~~v~~l~~~~~~~~l~~~~~~~~ 221 (350)
.|.|++++.+|.+.+++.|...|.
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCce
Confidence 578999999999999998887765
No 224
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.36 E-value=2e-11 Score=100.67 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=115.6
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
..++++++||.+..+....++++..... .........-...-+++.+...+...++
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~------------------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v 124 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPK------------------------GAKLLDVSCVPKRPTAISFIREDTSVLV 124 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCC------------------------cceeeeEeecccCcceeeeeeccceEEE
Confidence 4678899999998888887888763111 0111111112223344444443433332
Q ss_pred --EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 82 --SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 82 --s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
..+....+.+|....+.+...++|-.-++.++|+||+.+|++++.|+.|++-.......... -.-||..
T Consensus 125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies---------fclGH~e 195 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES---------FCLGHKE 195 (390)
T ss_pred EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh---------hccccHh
Confidence 34555667777777788888889999999999999999999999999999977664322221 2347999
Q ss_pred ceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370 160 SITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 160 ~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
-|..++.-++. |++|+.|++|++||+++|+.+.++.
T Consensus 196 FVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 99999999999 8999999999999999999887664
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.4e-10 Score=101.32 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred cceeeeccccCCceEEEEeeCCCcEEEEEeC---CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCe-
Q 045370 55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSL---DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGR- 129 (350)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~- 129 (350)
.....+..|...+.+..|+| +++.|+..+. +..|.+||+.++.......+.+.+....|+|+|+.|+ +.+.++.
T Consensus 192 ~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 33445567788999999977 5666666543 4689999999887765555667788899999998775 5555554
Q ss_pred -EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeE
Q 045370 130 -IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTN 203 (350)
Q Consensus 130 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~ 203 (350)
|++||+..+.. ..+..+........|+|++ ++..+ .+| .|++||+.++... .+..+.+.+..
T Consensus 271 ~Iy~~d~~~~~~-----------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~ 338 (435)
T PRK05137 271 DIYTMDLRSGTT-----------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST 338 (435)
T ss_pred eEEEEECCCCce-----------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence 77778774322 2344555566778999998 55554 333 6888898766543 34334455677
Q ss_pred EEEEccCCeEEeeecC
Q 045370 204 LVVIRQSSLLSEVSNC 219 (350)
Q Consensus 204 l~~~~~~~~l~~~~~~ 219 (350)
..|+|+|+.|+..+.+
T Consensus 339 ~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 339 PVWSPRGDLIAFTKQG 354 (435)
T ss_pred eEECCCCCEEEEEEcC
Confidence 8999999998876543
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=2.7e-11 Score=99.45 Aligned_cols=174 Identities=16% Similarity=0.276 Sum_probs=125.4
Q ss_pred CEEEEEeCC--CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370 8 FLLISGSDD--GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS 84 (350)
Q Consensus 8 ~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 84 (350)
.++|+||.. ..+.|||+++. .++|.........+- ..-.-.++++.|.++. ...|++++
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~---------------~qiw~aKNvpnD~L~---LrVPvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQS---------------KQIWSAKNVPNDRLG---LRVPVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred ceEecCchhcccceeeeecccc---------------eeeeeccCCCCcccc---ceeeeeeccceecCCCCCceEEEEe
Confidence 467779988 89999999842 122211100000000 0112234566776642 46799999
Q ss_pred CCCcEEEEeCCCCc-eEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370 85 LDATCKVWDLGSGI-LIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162 (350)
Q Consensus 85 ~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (350)
.-+.|++||.+.++ ++..+. ...+++++...|.++.+++|..-|.+..||++.+.... ..+.+..+.|+
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g---------~~~kg~tGsir 294 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG---------CGLKGITGSIR 294 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec---------cccCCccCCcc
Confidence 99999999999764 444554 46789999999999999999999999999999755432 13677889999
Q ss_pred EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370 163 ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 163 ~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 209 (350)
++..+|.. +++++-|..|||+|+.+.++++..- -...++++.+.++
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 99999997 9999999999999999987776654 2455666666554
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8.2e-11 Score=105.97 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=141.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.++||+++++|+|..||.|.+|.--.. .........+.-|.+.|.+++|++ +|.+|
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~-~G~~L 266 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSS-DGAYL 266 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccc-----------------------ccccccceEEEecccccceeEEec-CCceE
Confidence 368999999999999999999964310 011233445667999999999976 77889
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce-eeeccCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS-VLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (350)
++||..+.+-+|.+.+++........++|..+.++||+.+.+....|+.|.+..............-..+.. .-+...+
T Consensus 267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred eecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 999999999999999998544456788999999999999999999999999988754432211100000000 0122345
Q ss_pred ceEEEEecCC-e-EEEEeCCCcEEEEECCCceEEEEec-----cCC------CceeEEEEEccCCeEEeeec
Q 045370 160 SITALAFSAS-H-LISASEDKTVCLWDVTRRVSIRRFN-----HKK------GVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 160 ~i~~~~~~~~-~-l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~------~~v~~l~~~~~~~~l~~~~~ 218 (350)
-.+.++++|. + ++-.+..|.|.+||+.+.+.+..+. .+. -.+++++.+-.|.++++.-.
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 5677888883 3 8888889999999998877666553 122 25778888888999987643
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=1.5e-12 Score=116.41 Aligned_cols=117 Identities=27% Similarity=0.407 Sum_probs=105.2
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 135 (350)
+..+.+|...|.|+.|.. .+.++++|+.|..|+||.+.++.++... +|.+.|+.++.+.+..++++++.|..|++|-+
T Consensus 183 ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 345678999999999865 6789999999999999999999998885 59999999999999999999999999999999
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECC
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVT 186 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~ 186 (350)
. ...++..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 262 ~----------~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 262 P----------DGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR 300 (1113)
T ss_pred C----------CCchHHHHhccccceeeeccCccc--cCCCCCceEecccc
Confidence 8 456666899999999999999965 77889999999988
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=3.7e-11 Score=96.69 Aligned_cols=195 Identities=15% Similarity=0.136 Sum_probs=127.3
Q ss_pred eecCCCCEEEE-EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDGFLLIS-GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
.|+.|..++++ ...|+.|.+|++. .......+.....++..+.|+|.+.+++
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~---------------------------Qpew~ckIdeg~agls~~~WSPdgrhiL 107 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLV---------------------------QPEWYCKIDEGQAGLSSISWSPDGRHIL 107 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEee---------------------------cceeEEEeccCCCcceeeeECCCcceEe
Confidence 34445544333 3356677777777 4555666777889999999988666888
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
.+...|-.|.+|.+.+.+.....-....+..++|+|+|++.+.++.-.....+.+...+ .-.....+...+-.
T Consensus 108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-------~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-------AWILLKEFKLDTID 180 (447)
T ss_pred eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-------HHHHHHhcCCCccc
Confidence 89999999999999988776654455567999999999999888754322222221100 11112244445566
Q ss_pred eEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccccCCccccCCCCc
Q 045370 161 ITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKDRMPSLEKYPQLN 238 (350)
Q Consensus 161 i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 238 (350)
.+.+.|+|+| ..+.+||.--...+..+. ..-.+..+.|+|.+++|+.|+.|+ ++++-..+.+++++....
T Consensus 181 ltgieWsPdg-------~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 181 LTGIEWSPDG-------NWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred ccCceECCCC-------cEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 7889999997 123456543222222232 234688899999999999999984 555555555555554433
No 230
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-10 Score=92.49 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=130.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|++.|.-++++..+|.+.+-+... ..-.....++.|.-+.+...|+..+.+++
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~-------------------------~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETE-------------------------MVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecce-------------------------eeeeecccccccceeeeeeecccCCCceE
Confidence 46778888888888888887444330 01223447789999999999998888999
Q ss_pred EEEeCCCcEEEEeCC-CCceEEE--EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 81 VSSSLDATCKVWDLG-SGILIQT--QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
++|+.|+.+..||++ .++.+.. ..|...|.+|.-+| .+.+|++|+.|..|++||.++...+ +.. ..
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---------l~~-~~ 251 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---------LFK-AK 251 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---------ccc-Cc
Confidence 999999999999999 3444443 45888899998876 6789999999999999999953221 111 12
Q ss_pred cCCceEEEEecCCe---EEEEeCCCcEEEEECCCc--e---EEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 157 HNGSITALAFSASH---LISASEDKTVCLWDVTRR--V---SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~--~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
-.+.|..+.++|.. ++.++.-.-.+|-+...+ + .......|.+-...-.|.....+|++++.-++.
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence 23789999999976 444554444677776543 2 233445666666666665445678877655444
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.8e-10 Score=100.62 Aligned_cols=152 Identities=17% Similarity=0.120 Sum_probs=97.9
Q ss_pred eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEE
Q 045370 58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVS 133 (350)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~ 133 (350)
..+..+...+.+.+|+| +++.++..+.+ ..|.+||+.+++........+...+..|+|||+.|+ +.+.+|...+|
T Consensus 189 ~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 34456778888999977 56666665532 359999999987765544556677899999998876 56777776666
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEE--CCCceEEEEeccCCCceeEEEEEc
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWD--VTRRVSIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd--~~~~~~~~~~~~~~~~v~~l~~~~ 208 (350)
.+... ......+..+........|+|++ ++..+ .+|...||. +.++... .+..+.......+|+|
T Consensus 268 ~~d~~---------~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~Sp 337 (427)
T PRK02889 268 TVNAD---------GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISP 337 (427)
T ss_pred EEECC---------CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECC
Confidence 54321 11122444455556778899999 55444 345555664 4444432 2222223345678999
Q ss_pred cCCeEEeeecCc
Q 045370 209 QSSLLSEVSNCQ 220 (350)
Q Consensus 209 ~~~~l~~~~~~~ 220 (350)
+|++|+..+..+
T Consensus 338 DG~~Ia~~s~~~ 349 (427)
T PRK02889 338 DGKLLAYISRVG 349 (427)
T ss_pred CCCEEEEEEccC
Confidence 999998766543
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2e-10 Score=102.39 Aligned_cols=167 Identities=14% Similarity=0.048 Sum_probs=106.6
Q ss_pred CeecCCCCEEEEE-eCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISG-SDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
++|||||+.|+.. +.+| .|.+||+.+ +. ...+..+...+....|+| ++
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------------g~-~~~lt~~~~~~~~~~wSP-DG 298 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------------GQ-IRQVTDGRSNNTEPTWFP-DS 298 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------------CC-EEEccCCCCCcCceEECC-CC
Confidence 3799999988754 4455 488888872 22 222333445567788866 56
Q ss_pred cEEEEEeC-CCcEEE--EeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCccccccccccccccc
Q 045370 78 TFFVSSSL-DATCKV--WDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 78 ~~l~s~~~-d~~v~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
+.|+..+. ++...+ +|+.++................|+|+|++|+..+.+ ..|.+||+.++...
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~---------- 368 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ---------- 368 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE----------
Confidence 66655554 444444 467666554433344456678999999998776543 35888888754321
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCc---EEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKT---VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~---v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 209 (350)
.+... .......|+|++ ++.++.++. ++++++. +.....+..|.+.+...+|+|-
T Consensus 369 -~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 369 -VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 12111 123457899999 666666653 6777874 5566677778888899999873
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=110.42 Aligned_cols=144 Identities=22% Similarity=0.243 Sum_probs=118.7
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS 82 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 82 (350)
++++.-++++|+.-+.|.+|+.. .......+.+|.+.|..+.++. ++.++++
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~---------------------------~dn~p~~l~GHeG~iF~i~~s~-dg~~i~s 192 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPH---------------------------EDNKPIRLKGHEGSIFSIVTSL-DGRYIAS 192 (967)
T ss_pred ccCcEEEEEeccccccEEEEecc---------------------------ccCCcceecccCCceEEEEEcc-CCcEEEE
Confidence 46667789999999999999876 1222226789999999999955 7899999
Q ss_pred EeCCCcEEEEeCCCCceEE--EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC-C
Q 045370 83 SSLDATCKVWDLGSGILIQ--TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN-G 159 (350)
Q Consensus 83 ~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (350)
.|.|.++++|++.+.+... .+.|+..+..++|.|+ .+++++.|.+.++|+..- .....+.+|. .
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-----------~~l~~y~~h~g~ 259 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-----------TQLEVYDEHSGK 259 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-----------ceehhhhhhhhc
Confidence 9999999999999987765 3789999999999988 999999999999996552 2222555664 5
Q ss_pred ceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370 160 SITALAFSASH--LISASEDKTVCLWDVTR 187 (350)
Q Consensus 160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~ 187 (350)
.|..++..++. .+|++.||.+++||+..
T Consensus 260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 68888988887 99999999999999865
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.3e-09 Score=97.77 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=108.4
Q ss_pred eecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 2 VFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 2 ~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
+|||||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+....|+| +++
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~---------------------------g~~-~~l~~~~g~~~~~~~Sp-DG~ 255 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDT---------------------------GRR-EQITNFEGLNGAPAWSP-DGS 255 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCC---------------------------CCE-EEccCCCCCcCCeEECC-CCC
Confidence 699999998876643 3688888872 111 11222233344577866 555
Q ss_pred EE-EEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370 79 FF-VSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 79 ~l-~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
.+ ++...+| .|.+||+.++.......+........|+|+|+.|+..+. +| .|+++|+..+...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 44 4555555 588889998876554445555677899999998766553 33 5777777644321
Q ss_pred eeeccCCceEEEEecCCe--EEEEeC-CC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 153 VLKGHNGSITALAFSASH--LISASE-DK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+...........|+|++ ++..+. ++ .|.+||+.+++.. .+. +........|+|+|+.++.++..
T Consensus 325 ~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 325 RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEec
Confidence 111111233457899998 444443 33 5889999887643 332 12223356899999988876654
No 235
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.2e-11 Score=99.97 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370 68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.+++|+. ++..+++|+.||++|+|+..+.. .+....|...|.++.|+|||+.|++.+.| ..++|+..++........
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5667755 67889999999999999965544 44446799999999999999999999999 999999997733221110
Q ss_pred ccccceeeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCCceE-----EEEeccCCCceeEEEEEccCCeEE
Q 045370 147 GEDQHSVLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTRRVS-----IRRFNHKKGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~ 214 (350)
.........+.|+.+. ++....-+.|+.||+....- ..+...-...|++++.+++|++++
T Consensus 226 --------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 226 --------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred --------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 1122233344554332 22223345677766653221 111112245799999999999999
Q ss_pred eeecCcccc
Q 045370 215 EVSNCQRKL 223 (350)
Q Consensus 215 ~~~~~~~~~ 223 (350)
.|+.++-+.
T Consensus 298 lGT~dGsVa 306 (398)
T KOG0771|consen 298 LGTMDGSVA 306 (398)
T ss_pred EeccCCcEE
Confidence 998876443
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.2e-09 Score=97.70 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=105.2
Q ss_pred eecCCCCEEEEEeCC-C--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370 2 VFSDDGFLLISGSDD-G--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT 78 (350)
Q Consensus 2 ~~s~dg~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 78 (350)
.|||||+.|+..+.+ + .|.+||+.+ +.. ..+....+......|+|.+..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~t---------------------------g~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYT---------------------------QVR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCC---------------------------CCe-EEecCCCCCcCCeeECCCCCE
Confidence 699999988876543 3 577788762 111 111111223345678664434
Q ss_pred EEEEEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCcccccccccccccccee
Q 045370 79 FFVSSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 79 ~l~s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
++++.+.++. |.++|+.+++......+.......+|+|+|+.|+..+. ++ .|+++|+..+... .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-----------~ 344 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-----------R 344 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------E
Confidence 4455666775 77788888876554445556678899999998776543 34 4666676543211 1
Q ss_pred eeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 154 LKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+...........|+|++ ++..+ .++ .|.++|+.+++.. .+... .......|+|+|+.|+..+..
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence 21122223456899998 44433 344 4666788877643 23221 122345799999988766654
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.1e-09 Score=98.10 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=100.3
Q ss_pred eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCC--eEE
Q 045370 58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDG--RIF 131 (350)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~ 131 (350)
..+..+...+.+..|+| +++.++..+.+ ..|.+||+.+++........+...+..|+|+|+.|+ +.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 34456677888999976 66667766533 469999999887655544555566889999998775 445555 699
Q ss_pred EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCCc--EEEEECCCceEEEEeccCCCceeEEEE
Q 045370 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
+||+.++.. ..+..+.......+|+|++ |+.++ .+|. |+++|+.+++... +..+......++|
T Consensus 276 ~~d~~~g~~-----------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~ 343 (433)
T PRK04922 276 VMDLGSRQL-----------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASV 343 (433)
T ss_pred EEECCCCCe-----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEE
Confidence 999875432 1334444455678999998 55554 3444 7777877765432 2223334557899
Q ss_pred EccCCeEEeeecC
Q 045370 207 IRQSSLLSEVSNC 219 (350)
Q Consensus 207 ~~~~~~l~~~~~~ 219 (350)
+|+|++++..+.+
T Consensus 344 SpDG~~Ia~~~~~ 356 (433)
T PRK04922 344 SPDGKKIAMVHGS 356 (433)
T ss_pred CCCCCEEEEEECC
Confidence 9999998876544
No 238
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.6e-10 Score=93.91 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=114.5
Q ss_pred eeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC------CceEEEE--ecCCceeEEEEcCCCcEEEEEccCCe
Q 045370 58 HYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS------GILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGR 129 (350)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 129 (350)
.-+.+|.+.|.++.|+. ++.+|++|+.|..+++|.+.. .+++... .|...|.|++|+...+.+++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 44678999999999976 589999999999999999863 3455554 36678999999999999999999999
Q ss_pred EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEE--eccCCCceeEE
Q 045370 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRR--FNHKKGVVTNL 204 (350)
Q Consensus 130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~--~~~~~~~v~~l 204 (350)
|...|+.+...... ..-....+.|+.+..+|.. |++.+.++.|.+||.+... .+.. ..........+
T Consensus 129 VI~HDiEt~qsi~V--------~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 129 VIKHDIETKQSIYV--------ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred eEeeecccceeeee--------ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 99999985432210 0112234589999999966 9999999999999998755 2222 22234567888
Q ss_pred EEEccCCe-EEeeec
Q 045370 205 VVIRQSSL-LSEVSN 218 (350)
Q Consensus 205 ~~~~~~~~-l~~~~~ 218 (350)
-|+|...- |++.+.
T Consensus 201 ~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 201 EFHPETPALILVNSE 215 (609)
T ss_pred eecCCCceeEEeccc
Confidence 99998764 444443
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.20 E-value=6.6e-11 Score=95.27 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=122.6
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|||+|+++|+++.- .+.|-|.++ -... .+..--+.|.-+.|.......+.
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~t---------------------------lq~~-qlf~cldki~yieW~ads~~ilC 65 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSET---------------------------LQLH-QLFLCLDKIVYIEWKADSCHILC 65 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccch---------------------------hhHH-HHHHHHHHhhheeeeccceeeee
Confidence 699999999999865 788888773 1111 11122466777788665556677
Q ss_pred EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
....|+.|.+|++...+.-..+. .+.++.+++|+|+|+.|+. ..-+-.|.+|.+.+.... .++-...
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-----------~~~~pK~ 134 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-----------LLPHPKT 134 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-----------Eeccccc
Confidence 77889999999999887777665 5678999999999976654 556889999999854321 2223334
Q ss_pred ceEEEEecCCe-EEEE-e-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 160 SITALAFSASH-LISA-S-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 160 ~i~~~~~~~~~-l~s~-~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
.+..++|+|+| +++- + .|. .+.|..-.....++.+....-..+.+.|+|||..|++-.+
T Consensus 135 ~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence 56889999999 3332 2 232 2333333344556666655667899999999999986544
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=6.2e-09 Score=93.13 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=101.9
Q ss_pred eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCC--eEE
Q 045370 58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDG--RIF 131 (350)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~ 131 (350)
..+..+...+.+..|++ ++++++.++.+ ..|.+||+.++.......+...+.+++|+|+++.|+. .+.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 44445666788888866 66666665543 4799999998876665556667778999999987764 44444 588
Q ss_pred EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-CC--cEEEEECCCceEEEEeccCCCceeEEEE
Q 045370 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-DK--TVCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
+||+.++... .+..+........|+|++ |+..+. ++ .|+++|+.+++.. .+..+......+.|
T Consensus 262 ~~d~~~~~~~-----------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 262 VMDLDGKQLT-----------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW 329 (417)
T ss_pred EEECCCCCEE-----------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE
Confidence 8888754221 223344445567899988 554443 33 6888898876643 34334556778899
Q ss_pred EccCCeEEeeecCc
Q 045370 207 IRQSSLLSEVSNCQ 220 (350)
Q Consensus 207 ~~~~~~l~~~~~~~ 220 (350)
+|+|++++.++.+.
T Consensus 330 spdg~~i~~~~~~~ 343 (417)
T TIGR02800 330 SPDGDLIAFVHREG 343 (417)
T ss_pred CCCCCEEEEEEccC
Confidence 99999988777654
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.7e-09 Score=99.47 Aligned_cols=178 Identities=15% Similarity=0.151 Sum_probs=132.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCc----eEEEEeeCCCcEE
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSV----TGLLTISGGTTFF 80 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l 80 (350)
.+...++.+..+..+-+||... ...+... .+.... ..+.-.+.+.-++
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~---------------------------~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN---------------------------SSVLSKI-QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc---------------------------Cceehhc-CCCceEEEEeEEEEeccCcEEEE
Confidence 3456777888888888888872 2222211 122111 1112224455678
Q ss_pred EEEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370 81 VSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG 159 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (350)
++|+.-+.|.+|+.... .......|.+.|.++.|+-+|+++++.|.|..+++|++.+.+... ...-+|..
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------~~~fgHsa 219 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------CTGFGHSA 219 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------cccccccc
Confidence 99999999999998733 334457899999999999999999999999999999999754432 25568999
Q ss_pred ceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCCeEEeeecCc
Q 045370 160 SITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 160 ~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~~~ 220 (350)
.+..+.+.|+.++++++|.+.++|+.. +..+..+..|.+ .+..++..++...+++++.|+
T Consensus 220 Rvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 220 RVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred eeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 999999999999999999999999765 444447766654 789999998888888777664
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=8e-09 Score=89.59 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=115.9
Q ss_pred CEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 8 FLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 8 ~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
+++ ++-..+|.|.|.|.. +...+..+...... .....+++++.++++++.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~---------------------------t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rd 57 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA---------------------------TNKVVARIPTGGAP-HAGLKFSPDGRYLYVANRD 57 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT---------------------------T-SEEEEEE-STTE-EEEEE-TT-SSEEEEEETT
T ss_pred cEEEEEecCCCEEEEEECC---------------------------CCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCC
Confidence 344 556678999999988 45556665544333 4433446688888888999
Q ss_pred CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
|.|.++|+.+++.+..+........++++++|++++++. .++.+.++|.++.+.......... ........+..+.
T Consensus 58 g~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~---~~~~~~~Rv~aIv 134 (369)
T PF02239_consen 58 GTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM---PVDGPESRVAAIV 134 (369)
T ss_dssp SEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE----TTTS---EEEEE
T ss_pred CeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc---cccccCCCceeEE
Confidence 999999999999999999888899999999999998876 579999999986554332111100 0001345677787
Q ss_pred ecCCe--EEEEe-CCCcEEEEECCCceEE--EEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 166 FSASH--LISAS-EDKTVCLWDVTRRVSI--RRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 166 ~~~~~--l~s~~-~dg~v~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+|.. ++..- +-+.|.+.|......+ ..+. .........|+|++++++++...
T Consensus 135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 135 ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG
T ss_pred ecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccc
Confidence 77776 54444 4488888897765433 3333 34567789999999988876543
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=9.3e-09 Score=91.44 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred cCCceEEEEeeCCCcEEEEEe-CCC----cEEEEeCCCC---ceEEEEecC-CceeEEEEcCCCcEEEEEc-cCCeEEEE
Q 045370 64 KSSVTGLLTISGGTTFFVSSS-LDA----TCKVWDLGSG---ILIQTQVYP-QAVTAIAFHPGEQLLFAGS-IDGRIFVS 133 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~-~d~----~v~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~i~ 133 (350)
.+......|+| +++.|+..+ .+| .+..|++..+ ......... ......+|+|||+.|+..+ .+|...+|
T Consensus 230 ~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 230 QGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 33444567866 555555433 333 3455777653 333333222 3446789999999777655 46655555
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-C--CcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-D--KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 208 (350)
.+.... .......+..+...+....|+|++ |+..+. + ..|++||+.+++... +......+....|+|
T Consensus 309 ~~~~~~-------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 309 IMQIDP-------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI 380 (428)
T ss_pred EEECcc-------cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC
Confidence 432100 011122344444567788999999 554443 2 469999999887643 332334567899999
Q ss_pred cCCeEEeeec
Q 045370 209 QSSLLSEVSN 218 (350)
Q Consensus 209 ~~~~l~~~~~ 218 (350)
||+.|+....
T Consensus 381 DG~~L~f~~~ 390 (428)
T PRK01029 381 DSLHLVYSAG 390 (428)
T ss_pred CCCEEEEEEC
Confidence 9998875544
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=3.5e-08 Score=85.55 Aligned_cols=210 Identities=10% Similarity=0.075 Sum_probs=121.8
Q ss_pred CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+++|++++|+++.. +|.|.++++.......... .++... ..-............++.+.| ++++
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---------~~~~~~----g~g~~~~rq~~~h~H~v~~~p-dg~~ 157 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---------QTVRHE----GSGPNPDRQEGPHPHQVVFSP-DGRF 157 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---------EEEESE----EEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceee---------eecccC----CCCCcccccccccceeEEECC-CCCE
Confidence 468899999998875 8999999998311100000 000000 000000012234567778866 5555
Q ss_pred EEE-EeCCCcEEEEeCCCCc--eEE--E--EecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCC--ccccccccccccc
Q 045370 80 FVS-SSLDATCKVWDLGSGI--LIQ--T--QVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLK--FLLLEDHFIVGED 149 (350)
Q Consensus 80 l~s-~~~d~~v~vwd~~~~~--~~~--~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~~ 149 (350)
+++ .-....|.+|++.... +.. . +......+.+.|+|+++++++.. .++.|.++++. .+...........
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 544 4445579999998755 322 1 34556789999999999887665 56889999888 3222111111100
Q ss_pred cceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC--Cc--eEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370 150 QHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT--RR--VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~--~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+ .-.........|+++|++ +++....+.|.+|++. ++ +.+..+.........++++|+|++|+++..+...
T Consensus 238 ~--~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 238 P--EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp E--TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred c--ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 0 000112368899999999 4444467789999993 23 3444554334457999999999999988876554
Q ss_pred cccc
Q 045370 223 LKKD 226 (350)
Q Consensus 223 ~~~~ 226 (350)
+.+.
T Consensus 316 v~vf 319 (345)
T PF10282_consen 316 VSVF 319 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=3.8e-10 Score=91.50 Aligned_cols=211 Identities=15% Similarity=0.187 Sum_probs=128.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccc-cccceeeeccccCCceEEEEeeCCC-c
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRS-LRSLLHYSLEHKSSVTGLLTISGGT-T 78 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~ 78 (350)
|.|+.+|.+||||..+|.|.+|.-+..... +. ..+...+.+ ...-......-...|..+.|+++.+ .
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey---------~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG--EY---------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc--ce---------eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 468899999999999999999976632210 00 000000000 0000001112345788889987554 5
Q ss_pred EEEEEeCCCcEEEEeCCCCceE-----------------------------------EEE--ecCCceeEEEEcCCCcEE
Q 045370 79 FFVSSSLDATCKVWDLGSGILI-----------------------------------QTQ--VYPQAVTAIAFHPGEQLL 121 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~-----------------------------------~~~--~~~~~v~~~~~~~~~~~l 121 (350)
.++..+.|.+|++|.+...... +.+ .|.-.|.++.++.|+..+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 5667778999999987532110 111 145578999999999999
Q ss_pred EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE----e
Q 045370 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR----F 194 (350)
Q Consensus 122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~----~ 194 (350)
+++. |=.|.+|++......-. +..-....+..-..-|++..|+|.. ++-.+..|+|++-|++...+.-. +
T Consensus 180 lSAD-dLRINLWnlei~d~sFn--IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 180 LSAD-DLRINLWNLEIIDQSFN--IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eecc-ceeeeeccccccCCcee--EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 8876 78999999874221100 0000000111223568889999976 77788899999999995332111 1
Q ss_pred c------------cCCCceeEEEEEccCCeEEeeecC-cccccc
Q 045370 195 N------------HKKGVVTNLVVIRQSSLLSEVSNC-QRKLKK 225 (350)
Q Consensus 195 ~------------~~~~~v~~l~~~~~~~~l~~~~~~-~~~~~~ 225 (350)
. .--..|..+.|+++|+++++-+.- .++|.+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~ 300 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDL 300 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEec
Confidence 1 112368899999999999865432 344443
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=9.8e-09 Score=82.59 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=72.5
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCc-EEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT-CKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIF 131 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~ 131 (350)
....+.+|...|.|++.+- .|..+||+|..|+ |+|||..+|..+..+. ....|.+++|+|+..+|+++|..|+++
T Consensus 173 ~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 173 APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 3467789999999999855 7899999999998 5999999999999875 456799999999999999999999999
Q ss_pred EEeCCcc
Q 045370 132 VSPLKFL 138 (350)
Q Consensus 132 i~d~~~~ 138 (350)
++.++..
T Consensus 252 iF~l~~~ 258 (346)
T KOG2111|consen 252 IFSLRDT 258 (346)
T ss_pred EEEeecC
Confidence 9998853
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=3.4e-08 Score=88.58 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=98.4
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCC--eE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDG--RI 130 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i 130 (350)
...+..+...+....|+| +++.|+..+.+ ..|.+||+.+++........+......|+|+|+.|+ +.+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 344456677888899976 55666554433 368899999887655444455566789999999876 444454 68
Q ss_pred EEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEE
Q 045370 131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLV 205 (350)
Q Consensus 131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~ 205 (350)
++||+.++.. ..+..+........|+|++ ++..+ .+| .|+++|+.+++... +...........
T Consensus 270 y~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~ 337 (430)
T PRK00178 270 YVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPR 337 (430)
T ss_pred EEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceE
Confidence 8888875432 1233444556678899998 44444 333 58888888776433 221222344578
Q ss_pred EEccCCeEEeeecCc
Q 045370 206 VIRQSSLLSEVSNCQ 220 (350)
Q Consensus 206 ~~~~~~~l~~~~~~~ 220 (350)
|+|+|+.++..+...
T Consensus 338 ~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 338 LSADGKTLVMVHRQD 352 (430)
T ss_pred ECCCCCEEEEEEccC
Confidence 999999988776543
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=3.7e-08 Score=88.28 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=95.6
Q ss_pred eeeccccCCceEEEEeeCCCcEEEEEe-CCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCe--EE
Q 045370 58 HYSLEHKSSVTGLLTISGGTTFFVSSS-LDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGR--IF 131 (350)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~ 131 (350)
..+..+...+.+..|+| +++.++..+ .++ .|.+||+.+++........+......|+|+|+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 34455667888889976 555555543 333 588899988876544333444567899999997765 455664 77
Q ss_pred EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEE
Q 045370 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
++|+.++.. ..+..+........|+|++ ++..+ .++ .|+++|+.+++... +..........+|
T Consensus 290 ~~dl~tg~~-----------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~ 357 (448)
T PRK04792 290 VVDIATKAL-----------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSI 357 (448)
T ss_pred EEECCCCCe-----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeE
Confidence 778764321 2333444556778999998 44433 333 57777887776433 2212223345789
Q ss_pred EccCCeEEeeecCc
Q 045370 207 IRQSSLLSEVSNCQ 220 (350)
Q Consensus 207 ~~~~~~l~~~~~~~ 220 (350)
+|+|++|+..+...
T Consensus 358 SpDG~~l~~~~~~~ 371 (448)
T PRK04792 358 TPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCCEEEEEEecC
Confidence 99999888766543
No 249
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=4.9e-08 Score=77.85 Aligned_cols=175 Identities=15% Similarity=0.247 Sum_probs=109.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC----
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG---- 76 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---- 76 (350)
++||||+.+||.+...|+|++||+... .++...... .....-...|.++.|....
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~----------------~lf~I~p~~-----~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGS----------------ELFVIPPAM-----SFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccc----------------eeEEcCccc-----ccCCccccceeeeEeeccccccc
Confidence 589999999999999999999998731 111111100 0111234566666665543
Q ss_pred -CcEEEEEeCCCcEEEEeCCCC-----ceEEEEe----cCCceeEEEEcCCCcEEEEEccC----C-------eEEEEeC
Q 045370 77 -TTFFVSSSLDATCKVWDLGSG-----ILIQTQV----YPQAVTAIAFHPGEQLLFAGSID----G-------RIFVSPL 135 (350)
Q Consensus 77 -~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g-------~i~i~d~ 135 (350)
...|+.-..+|.++-|-+..+ +..+.+. ++..|.++.|+|..++|++|+.. + -+..|.+
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence 234666677888877775332 2233332 46789999999998888877642 1 2555655
Q ss_pred Ccccccccccccc-c------------ccee------eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370 136 KFLLLEDHFIVGE-D------------QHSV------LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 136 ~~~~~~~~~~~~~-~------------~~~~------~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~ 194 (350)
-++...-...... + .+.. .......|..|..+|++ |++.+.+|.|.+|++.+.+.....
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 4433211100000 0 0001 12246789999999999 999999999999999987777666
Q ss_pred cc
Q 045370 195 NH 196 (350)
Q Consensus 195 ~~ 196 (350)
..
T Consensus 268 ~~ 269 (282)
T PF15492_consen 268 KQ 269 (282)
T ss_pred ch
Confidence 43
No 250
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-08 Score=91.32 Aligned_cols=174 Identities=17% Similarity=0.244 Sum_probs=130.3
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
+++|+-|..+|.|++++.+ +.+ .....|... ..+|.+++||+.|
T Consensus 49 ~~~~~~GtH~g~v~~~~~~----------------------------~~~-~~~~~~s~~-------~~~Gey~asCS~D 92 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ----------------------------GNP-KTNFDHSSS-------ILEGEYVASCSDD 92 (846)
T ss_pred cceeeeccccceEEEEecC----------------------------Ccc-ccccccccc-------ccCCceEEEecCC
Confidence 5688999999999999887 222 233334333 3368999999999
Q ss_pred CcEEEEeCCCCceEEEEecCCceeEEEEcCC-----CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370 87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-----EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (350)
|.|.|-.+-+.+....+....++.+++++|+ .+.+++|+..| +.++.-+-.... .. ..+....++|
T Consensus 93 Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------~~-v~l~~~eG~I 163 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------DS-VVLSEGEGPI 163 (846)
T ss_pred CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------cc-eeeecCccce
Confidence 9999999999999988999999999999997 56899999888 777765532111 11 1455667899
Q ss_pred EEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCC------ceeEEEEEccCCeEEeeecCccccccc
Q 045370 162 TALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKG------VVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 162 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
.++.|..+.+|-++.+| |+|||+.+++.+..++.... ....+.|.++.++++.=+....+..+.
T Consensus 164 ~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 99999988888888776 89999999998888764322 345688988888887444444544443
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1e-08 Score=88.93 Aligned_cols=145 Identities=18% Similarity=0.269 Sum_probs=116.1
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cCCceeEEEEc------C--------------CCcEEEEEccCCe
Q 045370 74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YPQAVTAIAFH------P--------------GEQLLFAGSIDGR 129 (350)
Q Consensus 74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~l~~~~~dg~ 129 (350)
|+...++|....||.+++||...++....+. ..+...+..|. | +-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4456789999999999999999988776653 23444444442 1 2346788888999
Q ss_pred EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 207 (350)
|.+|++..++..... .-..|.+.|+++.++.+- |.+++.|+.+..|+...++.+..+......+.+++.+
T Consensus 82 v~~ys~~~g~it~~~--------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKL--------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EEEEEecCCeEEEEE--------ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence 999999865543322 224799999999998776 9999999999999999999999998888889999999
Q ss_pred ccCCeEEeeecCccccccc
Q 045370 208 RQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~~ 226 (350)
|||..+++++....+|.+.
T Consensus 154 ~D~~~l~~as~~ik~~~~~ 172 (541)
T KOG4547|consen 154 PDGKILLTASRQIKVLDIE 172 (541)
T ss_pred CCCCEEEeccceEEEEEcc
Confidence 9999999999988877765
No 252
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.9e-08 Score=79.12 Aligned_cols=172 Identities=12% Similarity=-0.017 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
..+||.||..|...+|...+. .........|...|.-+.-.-....-+..++.|
T Consensus 84 c~~la~gG~~g~fd~~~~~tn--------------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~snd 137 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTN--------------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASND 137 (344)
T ss_pred ccEEEeccccceeeeecccCc--------------------------ccceeeecccccchhhhhhhcccccceeeccCC
Confidence 347899999999999988731 122222233443332221111112236678889
Q ss_pred CcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370 87 ATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA 165 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (350)
.++++.++.-+......... -...++.++++++++++.+....|..|.+........ . .........-.+..
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~------~-~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE------N-IYEAPTSDHGFYNS 210 (344)
T ss_pred cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee------e-eEecccCCCceeee
Confidence 99999998855433322211 2388999999999999999999999999875321110 0 02223334456777
Q ss_pred ecCCe--EEEEeCCCcEEEEECCCceE-EEE----eccCCCceeEEEEEccCC
Q 045370 166 FSASH--LISASEDKTVCLWDVTRRVS-IRR----FNHKKGVVTNLVVIRQSS 211 (350)
Q Consensus 166 ~~~~~--l~s~~~dg~v~iwd~~~~~~-~~~----~~~~~~~v~~l~~~~~~~ 211 (350)
|+... +|++..||++.|||++.... ... -..|.+++..+.|++-|.
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 88766 99999999999999997433 222 246899999999998764
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=6.4e-08 Score=86.14 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=80.7
Q ss_pred CceEEEEeeCCCcEEEE-EeCCCcEEEEe--CCC-CceEEEE-ecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCc
Q 045370 66 SVTGLLTISGGTTFFVS-SSLDATCKVWD--LGS-GILIQTQ-VYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKF 137 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s-~~~d~~v~vwd--~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~ 137 (350)
......|+| ++..|+. ...+|...+|. +.. +.....+ .....+....|+|+|+.|+..+.+ ..|.+||+..
T Consensus 282 ~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 345567866 5665554 44567666664 432 2222323 234567788999999988876543 4789999875
Q ss_pred cccccccccccccceeeeccCCceEEEEecCCe--EE-EEeC--CCcEEEEECCCceEEEEeccCCCceeEEEEEccC
Q 045370 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LI-SASE--DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~-s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 210 (350)
+... .+......+....|+|++ |+ ++.. ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 361 g~~~-----------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 361 GRDY-----------QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCeE-----------EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 4321 222223456778999998 44 3332 3578899998776544333 44556778888754
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=4e-07 Score=78.97 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=117.9
Q ss_pred CeecCCCCEEEEEeC----CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370 1 MVFSDDGFLLISGSD----DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG 76 (350)
Q Consensus 1 i~~s~dg~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 76 (350)
|+++|++++|++... +|.|..|++.... .....+............++..+ +
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-----------------------g~L~~~~~~~~~g~~p~~i~~~~-~ 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-----------------------GTLTLLNSVPSGGSSPCHIAVDP-D 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-----------------------TEEEEEEEEEESSSCEEEEEECT-T
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCc-----------------------ceeEEeeeeccCCCCcEEEEEec-C
Confidence 478999999998877 4689888887200 01112222222334455666655 5
Q ss_pred CcEEEEEe-CCCcEEEEeCCC-CceEEE---Eec-----------CCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccc
Q 045370 77 TTFFVSSS-LDATCKVWDLGS-GILIQT---QVY-----------PQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLL 139 (350)
Q Consensus 77 ~~~l~s~~-~d~~v~vwd~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 139 (350)
+.+++++. .+|+|.++++.. +..... ..+ .....++.++|+++++++... ...|.+|++....
T Consensus 98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 56666654 589999999987 433332 211 234789999999998888653 4689999987543
Q ss_pred cccccccccccceee-eccCCceEEEEecCCe---EEEEeCCCcEEEEECC--Cce--EEEEecc----C--CCceeEEE
Q 045370 140 LEDHFIVGEDQHSVL-KGHNGSITALAFSASH---LISASEDKTVCLWDVT--RRV--SIRRFNH----K--KGVVTNLV 205 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~--~~~--~~~~~~~----~--~~~v~~l~ 205 (350)
..- . ....+ .........+.|+|++ +++.-.++.|.++++. ++. .+..+.. . ......+.
T Consensus 178 ~~l----~--~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 178 GKL----T--PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp -TE----E--EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred ceE----E--EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 100 0 01111 2345678899999998 5555568899999988 443 2333321 1 12578899
Q ss_pred EEccCCeEEeeecCcccc
Q 045370 206 VIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~ 223 (350)
++|+|++|+++......+
T Consensus 252 ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp E-TTSSEEEEEECTTTEE
T ss_pred EecCCCEEEEEeccCCEE
Confidence 999999999776654333
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=3.1e-09 Score=102.92 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=125.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370 4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS 83 (350)
Q Consensus 4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 83 (350)
+|...+.+||+.||.|++|.+.. ....+......+..|+.+.|+. .|+.+..+
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~--------------------------~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~ 2269 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGH--------------------------GQQVVCFRTAGNSRVTRSRFNH-QGNKFGIV 2269 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccC--------------------------CCeEEEeeccCcchhhhhhhcc-cCCceeee
Confidence 46677899999999999999873 1222222333448888888877 45567888
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc---cCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 84 SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS---IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 84 ~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
..||.+.+|.+...-.....-|........|-. ..+++++ .++.+.+||.... ...-..-+.|.+.
T Consensus 2270 d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---------~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2270 DGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---------PMNSLVHTCHDGG 2338 (2439)
T ss_pred ccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC---------cccceeeeecCCC
Confidence 889999999998332222234677777777754 5666654 4689999997632 1222233789999
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--cccccccc
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKDR 227 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~~ 227 (350)
++++++-|.. |++|+.+|.|++||++..+.+++++. ++ ...++++++.. +++|++..
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence 9999999998 99999999999999999888877764 44 45666766654 45665543
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.93 E-value=3.3e-07 Score=79.61 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=103.1
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|+|||+++++++.||.|.++|+. ....+..+... ....++++++ ++++++
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~---------------------------~~~~v~~i~~G-~~~~~i~~s~-DG~~~~ 93 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLA---------------------------TGKVVATIKVG-GNPRGIAVSP-DGKYVY 93 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETT---------------------------SSSEEEEEE-S-SEEEEEEE---TTTEEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECC---------------------------cccEEEEEecC-CCcceEEEcC-CCCEEE
Confidence 589999999999999999999998 45555555443 3457788866 555555
Q ss_pred -EEeCCCcEEEEeCCCCceEEEEec--------CCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccc
Q 045370 82 -SSSLDATCKVWDLGSGILIQTQVY--------PQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 82 -s~~~d~~v~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
+...++.+.++|..+.+.+..+.. ...+..+..+|....++..-. .+.|.+.|....... .
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~---------~ 164 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL---------K 164 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE---------E
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc---------c
Confidence 556789999999999998887652 235677888888885555544 488888887643111 1
Q ss_pred eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec
Q 045370 152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
..............|+|++ +++...+..|-++|..+++.+..+.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 1222334567789999998 4555667799999999998877653
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=5.8e-09 Score=82.98 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=103.1
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
.+++.+||.|+.+.-||++-+ ..........|...|.+|.-+++.+.+++||+.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p-------------------------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIP-------------------------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred CceEEecCCCceEEEEEecCC-------------------------cceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 368999999999999999820 1233344578999999999999889999999999
Q ss_pred CcEEEEeCCC-CceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370 87 ATCKVWDLGS-GILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 87 ~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
-.|++||.++ ++++..-+..+.|..+.++|.- ..++.++.-.-.++-+....... ........+.|.+-++.-
T Consensus 233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-----FQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred cceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc-----hheeeeccccccceeecc
Confidence 9999999994 6777776777999999999943 23333333333555555533221 111233556677767777
Q ss_pred EecCC-e-EEEEe-CCCcEE-EEECCC
Q 045370 165 AFSAS-H-LISAS-EDKTVC-LWDVTR 187 (350)
Q Consensus 165 ~~~~~-~-l~s~~-~dg~v~-iwd~~~ 187 (350)
.|... + +++++ .|..++ +|-.-+
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccccccceeeeeeccccceeeeeeecc
Confidence 77443 3 77765 466544 664433
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=1.7e-07 Score=73.89 Aligned_cols=146 Identities=10% Similarity=-0.022 Sum_probs=102.7
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce--EE--EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL--IQ--TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED 142 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 142 (350)
+.++.++ +++.++++.+....|..|.+..... +. .-...+.-.+..|+.....+++++.||.+.|||++......
T Consensus 161 ~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 6777774 4789999999999999999876432 22 12345567788999999999999999999999999765432
Q ss_pred ccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEecc-------CC-CceeEEEEEccC
Q 045370 143 HFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNH-------KK-GVVTNLVVIRQS 210 (350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~-~~v~~l~~~~~~ 210 (350)
..... .-..|.+.+..+.|++.| |+..-.-+.+++-|++++.....+.. |. ..+..-+|+.++
T Consensus 240 ~~~ss-----trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 240 AEISS-----TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhcc-----cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 21111 334588999999999876 44444457899999999876655532 22 236666666666
Q ss_pred CeEEeeec
Q 045370 211 SLLSEVSN 218 (350)
Q Consensus 211 ~~l~~~~~ 218 (350)
.-+.+.+.
T Consensus 315 ~s~~v~~e 322 (344)
T KOG4532|consen 315 ESNDVKNE 322 (344)
T ss_pred cccccccc
Confidence 55554443
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=4.9e-07 Score=76.97 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=111.0
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCC-cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDA-TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
.+|...|.-..+.. +++-++.|..|| .+-++|.+++......+.-+.|.++..+|+|++++++.....+.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 35666676666544 445688899999 8999999999888877778899999999999999999989999999999764
Q ss_pred cccccccccccceeeeccCCceEEEEecCCe--EEEEeCC----CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASED----KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 213 (350)
... .-+...+-|+.+.|+|++ +|-+--+ ..|+++|+.+++....-. ..+.=.+-+|.|++++|
T Consensus 435 v~~----------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 435 VRL----------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred eeE----------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence 321 223345779999999998 5555444 479999999887665443 33444566899999987
Q ss_pred Eeeec
Q 045370 214 SEVSN 218 (350)
Q Consensus 214 ~~~~~ 218 (350)
.--+.
T Consensus 504 YfLs~ 508 (668)
T COG4946 504 YFLSA 508 (668)
T ss_pred EEEec
Confidence 75443
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=6.5e-08 Score=78.83 Aligned_cols=217 Identities=18% Similarity=0.169 Sum_probs=128.2
Q ss_pred CeecCCC--CEEEEEeCCCcEEEEeCcccccccccc--ccccccc-cccEEEeecccc------ccceeeeccccCCceE
Q 045370 1 MVFSDDG--FLLISGSDDGMICVWSMTRLLKQTSEL--MHHSDQL-DQRLIEMELRSL------RSLLHYSLEHKSSVTG 69 (350)
Q Consensus 1 i~~s~dg--~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~h~~~v~~ 69 (350)
|.|.+++ ..++....|.+|++|.+.......... +....+. ...+..+..... ......-.+|+-.|.+
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 3566655 356667789999999987422221000 0000000 001111100000 1111233689999999
Q ss_pred EEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEE--Ee------cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccc
Q 045370 70 LLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQT--QV------YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~--~~------~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
+.+++ +...++++ .|=.|.+|++.--. .... ++ ...-|++..|||. .+.++-.+..|.|++-|++...
T Consensus 170 IS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 170 ISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 99977 55666665 58889999987422 2221 21 1235899999994 5667777788999999999654
Q ss_pred ccccccc------ccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEEC-CCceEEEEeccCCC------------
Q 045370 140 LEDHFIV------GEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDV-TRRVSIRRFNHKKG------------ 199 (350)
Q Consensus 140 ~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~------------ 199 (350)
+-..... ......-+..--..|..+.|+++| ++-+-.--+|++||+ ...+++.++..|..
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 3322110 011111233344678899999998 443333468999999 45677777765531
Q ss_pred ---ceeEEEEEccCCeEEeeecC
Q 045370 200 ---VVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 200 ---~v~~l~~~~~~~~l~~~~~~ 219 (350)
.-..++|+.++..+++|+..
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred chhheeEEEEcCCcceEeccccc
Confidence 12457899999999988765
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=8.9e-07 Score=72.97 Aligned_cols=192 Identities=15% Similarity=0.181 Sum_probs=122.3
Q ss_pred CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
|+|+|++++|.++-.+ |.|..|.++. .++.+ ..+........+...++..+ ++
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~--------------~~G~L---------t~ln~~~~~g~~p~yvsvd~-~g 100 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDP--------------DDGRL---------TFLNRQTLPGSPPCYVSVDE-DG 100 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcC--------------CCCeE---------EEeeccccCCCCCeEEEECC-CC
Confidence 5799999999888765 7788887772 00111 11111111222335666654 66
Q ss_pred cEEEEEeC-CCcEEEEeCCC-Cce---EEEEecCCc----------eeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccc
Q 045370 78 TFFVSSSL-DATCKVWDLGS-GIL---IQTQVYPQA----------VTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLE 141 (350)
Q Consensus 78 ~~l~s~~~-d~~v~vwd~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 141 (350)
++++++.. .|.|.++-++. |.+ +....|.+. +....+.|+++++++.+- --.|.+|++..+.+.
T Consensus 101 ~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~ 180 (346)
T COG2706 101 RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT 180 (346)
T ss_pred CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence 67766654 57899999876 432 233455555 889999999999998864 357999999855433
Q ss_pred cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc-eEEEEecc---------CCCceeEEEEEc
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-VSIRRFNH---------KKGVVTNLVVIR 208 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~-~~~~~~~~---------~~~~v~~l~~~~ 208 (350)
.. .+. .+ .......-|.|+|++ .+..=-+++|-+|..... ..+..++. .......+..+|
T Consensus 181 ~~-----~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 181 PA-----DPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cc-----ccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 21 111 11 345667889999999 445556899999998873 22222221 133567888999
Q ss_pred cCCeEEeeecCcccc
Q 045370 209 QSSLLSEVSNCQRKL 223 (350)
Q Consensus 209 ~~~~l~~~~~~~~~~ 223 (350)
+|++|.++......+
T Consensus 254 dGrFLYasNRg~dsI 268 (346)
T COG2706 254 DGRFLYASNRGHDSI 268 (346)
T ss_pred CCCEEEEecCCCCeE
Confidence 999999665443333
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=4.5e-09 Score=101.85 Aligned_cols=144 Identities=15% Similarity=0.306 Sum_probs=112.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|+.+|+.+..+..||.+.+|.+. ..++...+-|+....+..|.. ..+
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~ 2305 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLL 2305 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC----------------------------CcceeccccCCccccceeeee---hhh
Confidence 3578888888888889999999876 566677788999999999876 456
Q ss_pred EEEe---CCCcEEEEeCCCCc---eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 81 VSSS---LDATCKVWDLGSGI---LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 81 ~s~~---~d~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
++++ .++.+.+||..-.. ++. .-|.+.++++++-|....|++|+.+|.|++||++.....+ .+
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h----------~~ 2374 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH----------TF 2374 (2439)
T ss_pred hccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH----------Hh
Confidence 7654 57899999965432 233 5689999999999999999999999999999999543322 22
Q ss_pred eccCCceEEEEec-CCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370 155 KGHNGSITALAFS-ASHLISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 155 ~~~~~~i~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
+. ++ .+.+++|+..|.++||++.....++++.
T Consensus 2375 ~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 QA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh---------hhhhheeeccCcccceEEEEccccchhhcCc
Confidence 11 33 2239999999999999999888887775
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=6.3e-07 Score=79.35 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=102.0
Q ss_pred eecCCCCE-EEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370 2 VFSDDGFL-LISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 2 ~~s~dg~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (350)
.|||||+. ++..+.+ ..|.++|+.+ +.. ..+....+......|+|++.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------------g~~-~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------------GKK-EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCC---------------------------CcE-EEEecCCCcEEeeEECCCCC
Confidence 68999984 5544433 4577777762 222 22222344455566866444
Q ss_pred cEEEEEeCC--CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370 78 TFFVSSSLD--ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS 152 (350)
Q Consensus 78 ~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 152 (350)
.++++.+.+ ..|.++|+.++.......+........|+|||+.|+..+. .| .|+++|+..+...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----------- 314 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----------- 314 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----------
Confidence 455555444 4577778888775554444433445689999987776653 33 6777777654321
Q ss_pred eeeccCCceEEEEecCCe--EEEEe-CC--------CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 153 VLKGHNGSITALAFSASH--LISAS-ED--------KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~--l~s~~-~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+...... ...|+|++ ++..+ .. ..|++.|+.++.. ..+... +......|+|||+.++.....
T Consensus 315 rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 315 QVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred eCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11111111 24899999 43333 22 3688889888764 344322 233468899999988766543
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=9.8e-09 Score=88.64 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL 85 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 85 (350)
+.+-+++++.|.+|++|.+..... ...+..+..++..|..+|.++-|.. +...+ ++.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~Sc 802 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASC 802 (1034)
T ss_pred cccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeee-cccee--eec
Confidence 345788999999999999884211 1123446677899999999999876 33344 455
Q ss_pred CCcEEEEeCCCCceEEEE----ecC--CceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 86 DATCKVWDLGSGILIQTQ----VYP--QAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~----~~~--~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
||.|.+||.--++.+... ++. +.|.|+.- -+...+++| +...+|+++|.+.......+.+. ...+..
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc-----na~~Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVC-----NAPGPN 876 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEec-----cCCCCc
Confidence 899999998777766532 122 22333321 134444444 67899999999987654433222 334556
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK 197 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~ 197 (350)
..+.+++..|.| ++++-.+|.|.+.|.++|..+..+..-
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 778999999988 999999999999999999998877543
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=5e-08 Score=86.85 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=88.5
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+.+..|+|+||.||.++|..+.+..... +...+.....-..-.++.+|+..|.-+.|+. +...|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~------------~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKL 86 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDL------------NKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKL 86 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcc------------cccccccccccchhhhhccCcceEEEEEecc-ccccc
Confidence 4688899999999999999999887421111 0000001111223346789999999999966 45668
Q ss_pred EEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 81 VSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
-|...+|.|.+|-+-.|..... -...+.|.+++|+.+|..|+..-.||.|.+=.+.
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 8889999999999988765443 2355679999999999999888888887765443
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=3e-08 Score=77.73 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccc-cccc---------------c------ccEEEeeccccccceeeeccc
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHH-SDQL---------------D------QRLIEMELRSLRSLLHYSLEH 63 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~---------------~------~~~~~~~~~~~~~~~~~~~~h 63 (350)
-++.++++..||.+.+++.+.........+.. .+.. . +..+....+.......... -
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~ 178 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-A 178 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-c
Confidence 35679999999999999988622211111111 1100 0 1111111111111111111 2
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLL 140 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 140 (350)
.+.|.+++-+|...+++++|+.||.+-+||.++.....+ ..|+.++.-+-|+| ++..|++++.||.+..||..+.-.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l 258 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL 258 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE
Confidence 234888888887788899999999999999998855544 34899999999999 677999999999999999874211
Q ss_pred cc--------ccccccccce-------eeeccCCceEEEEecCCeEEEEeCCCcEEEEE
Q 045370 141 ED--------HFIVGEDQHS-------VLKGHNGSITALAFSASHLISASEDKTVCLWD 184 (350)
Q Consensus 141 ~~--------~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd 184 (350)
.. .++. ..+++ .+......|+.+......|++|+.-+.|++++
T Consensus 259 ~i~~~~s~~s~WLs-gD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 259 SISNQASVISSWLS-GDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCcccccccccc-CCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 10 0000 01111 11122234555555555588888777777764
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=2e-08 Score=81.80 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=102.5
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-----ceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCC
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-----ILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 136 (350)
....|.++.|.. .++++..|+.+|.|...|++.+ .+...+-|+..|+++..-. ++.+|.+.+.+|.|.+||++
T Consensus 251 sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 456777777754 4578999999999999999864 5666788999999998776 78899999999999999999
Q ss_pred ccccccccccccccceeeeccCCceEEEEe--cCC-e-EEEEeCCCcEEEEECCCceEEEEeccCCC----ceeEEEEE
Q 045370 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAF--SAS-H-LISASEDKTVCLWDVTRRVSIRRFNHKKG----VVTNLVVI 207 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~l~~~ 207 (350)
..+. ...+....+|...-.-+-+ .+. + +++++.|...|||.++.+.++.+++-... .+.+++|.
T Consensus 330 ~~K~-------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 330 ATKC-------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred hhhc-------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 5432 2235566777554433333 233 3 88899999999999999999998863322 34455553
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.9e-06 Score=71.13 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=122.6
Q ss_pred CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC----------ceE
Q 045370 1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS----------VTG 69 (350)
Q Consensus 1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~ 69 (350)
|+++++|++|+++.. -|.|.++-++... .+. .......|.+. +..
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG---------------~l~---------~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADG---------------SLQ---------PVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCC---------------ccc---------cceeeeecCCCCCCccccCCccce
Confidence 578899999998886 5789998886311 110 01111122222 556
Q ss_pred EEEeeCCCcEEEEEeC-CCcEEEEeCCCCceEEE----EecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCcc--ccc
Q 045370 70 LLTISGGTTFFVSSSL-DATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFL--LLE 141 (350)
Q Consensus 70 ~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~ 141 (350)
..+.| +++++++... --.|.+|++..|.+... ++.....+.|.|+|++++.++.++ +++|-+|..... +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 66655 6666666532 23599999998765443 345667899999999999887664 799999998863 221
Q ss_pred cccccccccceeeeccCCceEEEEecCCe-EEEEeC--CCcEEEEECCC--ceE--EEEeccCCCceeEEEEEccCCeEE
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASE--DKTVCLWDVTR--RVS--IRRFNHKKGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~--dg~v~iwd~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~ 214 (350)
........+ ..+ .......+|.++|+| ++-+|. ...|.+|.+.. +++ +.....+....+.+.|+|.+++|+
T Consensus 229 ~lQ~i~tlP-~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 229 ELQTIDTLP-EDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EeeeeccCc-ccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 111111000 011 123567889999999 444443 34677776643 332 222233444578999999999999
Q ss_pred eeecCccccccc
Q 045370 215 EVSNCQRKLKKD 226 (350)
Q Consensus 215 ~~~~~~~~~~~~ 226 (350)
++..+...+.+.
T Consensus 307 aa~q~sd~i~vf 318 (346)
T COG2706 307 AANQKSDNITVF 318 (346)
T ss_pred EEccCCCcEEEE
Confidence 888775444333
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.83 E-value=6.3e-08 Score=78.86 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=70.3
Q ss_pred ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceE--EEEecCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILI--QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIF 131 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 131 (350)
..++..+.+|.+.+.++.|.+ ....+.+|..|..|.+||+..++-. ....|...|..++.-+.-+.+++++.||.|.
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 456677899999999999977 5578999999999999999765433 3367888999999888889999999999999
Q ss_pred EEeCCc
Q 045370 132 VSPLKF 137 (350)
Q Consensus 132 i~d~~~ 137 (350)
+|+.+.
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999865
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=1.6e-08 Score=90.07 Aligned_cols=201 Identities=17% Similarity=0.237 Sum_probs=138.9
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc----------------------cccEEEeecccccccee
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL----------------------DQRLIEMELRSLRSLLH 58 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 58 (350)
+..+|.|+-+|.++.-| +.+-|+..+..+...+.+..... ...+|.+...+....-.
T Consensus 30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 35677888788887766 55667776555544443332211 11233333333344445
Q ss_pred eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
.+-+|...|+.+-|.+.....+++++.|-.|..||+++.. .+.... -......+.|+.....+.+.+....|++||.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 6678999999999999888999999999999999999854 333322 34556789999866667777778899999999
Q ss_pred ccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCC
Q 045370 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSS 211 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~ 211 (350)
. ...+...+++|...|+.++|+.-. +.+++.||+|+.||......... ......+|..-.+.|-|.
T Consensus 189 ~---------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 189 K---------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred C---------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 6 455566788899999999998654 99999999999999875332111 112344566666666543
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=1.5e-06 Score=85.39 Aligned_cols=159 Identities=8% Similarity=-0.068 Sum_probs=99.0
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------cCCceeEEEEcCCCcEEEE-EccCCeE
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---------------YPQAVTAIAFHPGEQLLFA-GSIDGRI 130 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~-~~~dg~i 130 (350)
..++++.+.++.++++.+.++.|++||..++....... .-.....++++|++..|++ -+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 45788877677788888889999999998775432211 0123567999999985554 4567999
Q ss_pred EEEeCCcccccccccc---ccccceeee--------ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--
Q 045370 131 FVSPLKFLLLEDHFIV---GEDQHSVLK--------GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-- 195 (350)
Q Consensus 131 ~i~d~~~~~~~~~~~~---~~~~~~~~~--------~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-- 195 (350)
++||+.++........ .......+- ..-.....+++++++ +++-+.++.|++||..++.......
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 9999886432100000 000000000 011234688999988 6667788999999998876653321
Q ss_pred -----------cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370 196 -----------HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 196 -----------~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
+.......++++++|+++++- .....++.+
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD-t~Nn~Irvi 885 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVAD-TNNSLIRYL 885 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEE-CCCCEEEEE
Confidence 112246789999999876644 443333333
No 272
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=85.87 Aligned_cols=156 Identities=22% Similarity=0.225 Sum_probs=120.0
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC--CCcEEEEEccCCeEE
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP--GEQLLFAGSIDGRIF 131 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 131 (350)
+...+..|.+.|..+.|+. .+..+++|+.|..|.+||...+.....+ +|...|....|-| +...+++++.||.++
T Consensus 134 l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3456788999999999976 6789999999999999999998877765 4777788888888 456899999999999
Q ss_pred EEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEe---ccCCC---cee
Q 045370 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRF---NHKKG---VVT 202 (350)
Q Consensus 132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~---~v~ 202 (350)
+=.+.... ..+....+..|.++|..++.-|+. |.+++.|+.+.-+|++.+.+...+ ..+.. .+.
T Consensus 213 ~s~i~~t~-------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 213 VSEILETG-------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred eeeecccc-------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 87665322 122233566799999999998877 999999999999999987654333 22333 577
Q ss_pred EEEEEccCC-eEEeeecC
Q 045370 203 NLVVIRQSS-LLSEVSNC 219 (350)
Q Consensus 203 ~l~~~~~~~-~l~~~~~~ 219 (350)
.++..|... .+++++.+
T Consensus 286 ~Ia~~P~nt~~faVgG~d 303 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSD 303 (559)
T ss_pred eEecCCCCccccccCChh
Confidence 888999877 55544444
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=2.1e-08 Score=80.63 Aligned_cols=193 Identities=15% Similarity=0.235 Sum_probs=120.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccc------------cCCce
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEH------------KSSVT 68 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~ 68 (350)
|.|...|.||++|...|.|.+|.-+... .+. ...+..+++| ...|.
T Consensus 32 Vefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------ykf~teFQshe~EFDYLkSleieEKin 89 (460)
T COG5170 32 VEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------YKFFTEFQSHELEFDYLKSLEIEEKIN 89 (460)
T ss_pred EEeccccceEeecCCCceEEEeeccccc-ccc---------------------hhhhhhhcccccchhhhhhccHHHHhh
Confidence 3577889999999999999999766311 000 0111112222 35678
Q ss_pred EEEEeeCCC-cEEEEEeCCCcEEEEeCCCCce-------------------------------------EE-------EE
Q 045370 69 GLLTISGGT-TFFVSSSLDATCKVWDLGSGIL-------------------------------------IQ-------TQ 103 (350)
Q Consensus 69 ~~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~-------------------------------------~~-------~~ 103 (350)
.+.|+.+.+ ..++..+.|.+|++|.+..... +. .-
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 888887654 4566667899999998753210 00 01
Q ss_pred ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcE
Q 045370 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTV 180 (350)
Q Consensus 104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v 180 (350)
.|+..+.++.|+.+...++++. |-.|.+|++......- .+..........-...|++..|+|.. +.-.+..|.|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 1445688899998888888775 7889999987432110 00000000111123468888999976 6677789999
Q ss_pred EEEECCCceEE------EE----------eccCCCceeEEEEEccCCeEEeeec
Q 045370 181 CLWDVTRRVSI------RR----------FNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 181 ~iwd~~~~~~~------~~----------~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
++-|++...+. .. +..-...|..+.|+++|+++++-+.
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 99999843221 11 1112346888999999999985443
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.80 E-value=1.6e-07 Score=76.64 Aligned_cols=189 Identities=19% Similarity=0.304 Sum_probs=137.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.+.++...|+.|-..|++.-+.+.. .-+.....+....|...+..+.|.- ..+++
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~se-----------------------dfnkm~~~r~~~~h~~~v~~~if~~-~~e~V 129 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSE-----------------------DFNKMTFLKDYLAHQARVSAIVFSL-THEWV 129 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhh-----------------------hhhhcchhhhhhhhhcceeeEEecC-CceeE
Confidence 35667778888998899988887651 1113445566788999999998855 55789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++.+.|..+.---.+.+..+..+.......++.+.-. +.+.|...|.|..-.+... ....+..+.+|.+.
T Consensus 130 ~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~--------~~~~i~~~~~h~~~ 199 (404)
T KOG1409|consen 130 LSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQN--------GCQLITTFNGHTGE 199 (404)
T ss_pred EEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeec--------CCceEEEEcCcccc
Confidence 9999998876655666655544433333333333322 6677777777776655421 34556688999999
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
++++.|.|.. |.+|..|..+.+||+--++ ....+.+|...|..++..+.-+.+.+++.|+.+.
T Consensus 200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 9999999977 9999999999999997544 3455678899999999888888888788776543
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.6e-07 Score=76.90 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=90.7
Q ss_pred CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370 87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
.++.+.++....+...+.-.++|.++.|+|+++.++++. .--.+.+||++-. + .+.-..++-+++
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----------~--v~df~egpRN~~ 317 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----------P--VFDFPEGPRNTA 317 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----------E--eEeCCCCCccce
Confidence 368888888666666677889999999999998877654 4578999998732 1 333456777899
Q ss_pred EecCCe--EEEEeC---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 165 AFSASH--LISASE---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 165 ~~~~~~--l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
-|+|.| ++.++. -|.+-|||+.+.+.+..+.... -+-+.|+|||++++++...
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence 999999 444443 4899999999999998887543 3557899999999988764
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=1.1e-06 Score=86.36 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=107.0
Q ss_pred CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|+| ++.++++.+.++.|++||..+.....- .+. +.... ..... .....-....++++++.++.+
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~--~G~-----G~~~~-----~~g~~-~~~~~~~~P~GIavspdG~~L 754 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF--SGD-----GYERN-----LNGSS-GTSTSFAQPSGISLSPDLKEL 754 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEE--ecC-----Ccccc-----CCCCc-cccccccCccEEEEeCCCCEE
Confidence 46888 566677777889999999874211100 000 00000 00000 001112346778887755556
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe--------------c--------CCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQV--------------Y--------PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~--------------~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 137 (350)
+++-+.++.|++||+.++....... . -.....++++++|+.+++-+.++.|++||..+
T Consensus 755 YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 755 YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 7777788999999998765322110 0 01246889999999888888899999999976
Q ss_pred ccccccccccc---ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceE
Q 045370 138 LLLEDHFIVGE---DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVS 190 (350)
Q Consensus 138 ~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~ 190 (350)
+.......... ..-....+.-.....+++++++ +++-+.++.|++||+.+++.
T Consensus 835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 54332110000 0000112233467889999998 66777889999999998765
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.75 E-value=1.3e-05 Score=68.48 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred CCcEEEEEccCCeEEEEeCCccccccccccccccceeee-------ccCCceEEEEecCCe--EEE-Ee---------CC
Q 045370 117 GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK-------GHNGSITALAFSASH--LIS-AS---------ED 177 (350)
Q Consensus 117 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--l~s-~~---------~d 177 (350)
+|+++++... |.|.+.|+........ .....+. -..+.+.-++++|++ ++. .. ..
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~-----~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFL-----PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceec-----ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 7777777665 8888888654322111 1111111 123444459999987 444 31 12
Q ss_pred CcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCc
Q 045370 178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQ 220 (350)
Q Consensus 178 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~ 220 (350)
+.|.++|..+++.+..+.. ...+..++++||++ +|++.+...
T Consensus 279 ~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred CEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCC
Confidence 5799999999999999873 45789999999999 777666443
No 278
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.72 E-value=4.1e-06 Score=73.70 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=81.7
Q ss_pred CceEEEEeeCCCcEEEEE----eCCCc----EEEEeCCCCceEE----EEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370 66 SVTGLLTISGGTTFFVSS----SLDAT----CKVWDLGSGILIQ----TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS 133 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~----~~d~~----v~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 133 (350)
...++.|+...+..+.|. +.+|. -.+|++..++... .++.+..+.+++++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 346667766555556553 33443 3567776554332 36688999999999999999999999999999
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR 188 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~ 188 (350)
|..... .....+.-.++.++|+|+| +++|+..|.+.+||+.-.
T Consensus 287 D~~~~~------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGV------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCe------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 987431 1233445668899999999 888999999999998643
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.65 E-value=7.2e-06 Score=70.08 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=104.6
Q ss_pred EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-eEEEEeCCcccccccccccccc
Q 045370 72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQ 150 (350)
Q Consensus 72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 150 (350)
|...++++++..|. |...+.+...+-.+ .+++.+.|.-..+..++.-++.|..|| .+-+||.+.++..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k--------- 395 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK--------- 395 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------
Confidence 34456788888874 66777776655444 356677788888888888999999998 9999999865432
Q ss_pred ceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 151 HSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.+...-+.|.++..+|+| ++.+.....|.+.|+.++.....-....+-|+.++|||+++++|-+--+
T Consensus 396 --r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 396 --RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred --EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 455666889999999998 7777777889999999987655444556789999999999999976554
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=3e-05 Score=63.99 Aligned_cols=210 Identities=18% Similarity=0.087 Sum_probs=122.5
Q ss_pred eecC-CCCEEEEEeCCCcEEEEeCcccccccccccc---cccc-ccccEEEeecc-------cccc--ceeeec--c-cc
Q 045370 2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMH---HSDQ-LDQRLIEMELR-------SLRS--LLHYSL--E-HK 64 (350)
Q Consensus 2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-------~~~~--~~~~~~--~-h~ 64 (350)
.|.+ +|.++++--..+.|..|+..+.......... .... .++.++..... .... .+.... . ..
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCccc
Confidence 5787 6777777777889999988764432211111 1111 12222222111 1111 111111 1 34
Q ss_pred CCceEEEEeeCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeC
Q 045370 65 SSVTGLLTISGGTTFFVSSSLD--------ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPL 135 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~ 135 (350)
...+.+++.+ ++.+.++.... |.|..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..|++
T Consensus 86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence 5567787766 56666665543 457777777 56555555556678999999998776 5566789999998
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCe-EE-EEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE-ccCCe
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSL 212 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~ 212 (350)
......- ........+....+..-.+++..+| |. +....+.|.++|.. |+.+..+......+++++|. ++.+.
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~ 239 (246)
T PF08450_consen 164 DADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKT 239 (246)
T ss_dssp ETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSE
T ss_pred cccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCE
Confidence 6322100 0011111222222457889999998 44 44468899999998 88888887555689999995 66565
Q ss_pred EEeee
Q 045370 213 LSEVS 217 (350)
Q Consensus 213 l~~~~ 217 (350)
|+.++
T Consensus 240 L~vTt 244 (246)
T PF08450_consen 240 LYVTT 244 (246)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=9.9e-08 Score=82.60 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=106.9
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-------ceEEE-EecCCceeEEEEcCCCcEEEEEccC
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-------ILIQT-QVYPQAVTAIAFHPGEQLLFAGSID 127 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 127 (350)
.+..+.+|...|..++.... .+-+++++.|++|++|.++.. .+..+ ..|..+|.++.|-.+.++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34567899999999987664 455889999999999998742 13333 3589999999998888887766 8
Q ss_pred CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-----cCCCc
Q 045370 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-----HKKGV 200 (350)
Q Consensus 128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~ 200 (350)
|.|++||.-.+......... .-.+..+.|.|+.--... ++.++...+|+++|.+.+.-...+. +..+.
T Consensus 804 ~giHlWDPFigr~Laq~~da-----pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDA-----PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred CcceeecccccchhHhhhcC-----cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 99999997644322111000 112233445554432222 4444788999999999877555543 34456
Q ss_pred eeEEEEEccCCeEEeeecC
Q 045370 201 VTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 201 v~~l~~~~~~~~l~~~~~~ 219 (350)
+.+++.-|.|+.++++-+.
T Consensus 879 ~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred eeEEEeccCcchhhHHhcC
Confidence 8999999999998866554
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4.2e-06 Score=72.73 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=93.3
Q ss_pred ccccCCceEEEEeeCCCcEEEE-EeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCC
Q 045370 61 LEHKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLK 136 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~ 136 (350)
....++|.++.|++.+..+.+. |-.=-.+.++|++ +.++..+. .++-+++-|+|.|++|+.++- .|.+-+||+.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 3457999999998866555444 3345678999988 55555554 456788999999999888765 3899999998
Q ss_pred ccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 208 (350)
+.+... .+.. ...+-+.|+|+| ++|+.. |+.++||+.. |..+....- ...+..+.|-|
T Consensus 345 n~K~i~----------~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 345 NRKLIA----------KFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KSELLQVEWRP 410 (566)
T ss_pred chhhcc----------cccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hHhHhheeeee
Confidence 644322 2222 234568999999 666553 6889999986 555554331 22577888876
Q ss_pred cCC
Q 045370 209 QSS 211 (350)
Q Consensus 209 ~~~ 211 (350)
...
T Consensus 411 ~~~ 413 (566)
T KOG2315|consen 411 FND 413 (566)
T ss_pred cCC
Confidence 543
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1e-07 Score=77.77 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=100.3
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
++.+.+-.|-+-|+.+|.. +.+...+.|.++.|...++.++.|+.+|.|..+|++....... .+. ..-.|...
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-----~~a-~rlyh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-----WCA-QRLYHDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-----cce-EEEEcCcc
Confidence 4555677788889887743 3345778899999999999999999999999999996532221 111 22358888
Q ss_pred eEEEEecC---CeEEEEeCCCcEEEEECCCceE---EEEeccCCCceeEEE--EEccCCeEEeeecC--cccccccc
Q 045370 161 ITALAFSA---SHLISASEDKTVCLWDVTRRVS---IRRFNHKKGVVTNLV--VIRQSSLLSEVSNC--QRKLKKDR 227 (350)
Q Consensus 161 i~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~--~~~~~~~l~~~~~~--~~~~~~~~ 227 (350)
|+++..-. ..|++.+.+|+|.+||++.-++ +.++.+|...-.-+- ..+....+++++.| .++|.+.+
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 99887544 3399999999999999998666 888888866443333 34556677765555 45665553
No 284
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.6e-07 Score=52.92 Aligned_cols=35 Identities=37% Similarity=0.650 Sum_probs=32.2
Q ss_pred cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370 150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWD 184 (350)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd 184 (350)
++..+.+|...|++++|+|++ |++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345888999999999999998 99999999999997
No 285
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=2.1e-06 Score=78.76 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=103.0
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEcc---------CCeEEEE
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSI---------DGRIFVS 133 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~ 133 (350)
...|.-+.. ++.++.+|...|+|.+-|.++.+.++++. |.+.+..+.. .|+.|++++. |..|++|
T Consensus 177 a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 177 ASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred CCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 334555544 56789999999999999999999999975 8888887665 6888888864 5678999
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC---c-eEEEEeccCCCceeEEEE
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR---R-VSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~---~-~~~~~~~~~~~~v~~l~~ 206 (350)
|++....... +.-+-+ ..-+.|+|.. +++++..|...+-|..+ . ..+..+......+..+++
T Consensus 252 DLRmmral~P----------I~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 252 DLRMMRALSP----------IQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred hhhhhhccCC----------cccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence 9996543322 111222 2456788876 89999999999999433 2 123333434455999999
Q ss_pred EccCCeEEeeecCcc
Q 045370 207 IRQSSLLSEVSNCQR 221 (350)
Q Consensus 207 ~~~~~~l~~~~~~~~ 221 (350)
+++++.++.+..++.
T Consensus 321 Ssn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGH 335 (1118)
T ss_pred cCCCceEEEecccCc
Confidence 999999998877654
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=3.1e-05 Score=66.79 Aligned_cols=141 Identities=7% Similarity=0.052 Sum_probs=91.6
Q ss_pred CCceEEEEeeC-CCcEEEE-----EeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-----------c
Q 045370 65 SSVTGLLTISG-GTTFFVS-----SSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-----------I 126 (350)
Q Consensus 65 ~~v~~~~~~~~-~~~~l~s-----~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------~ 126 (350)
..+....++|. ++..|+. .+.++.+++|.+..+..+.+.. ....-..+.|++.|+++++-. .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 45566667664 2333332 5678899999999887776633 222334678999888776532 1
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCcee
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVT 202 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 202 (350)
...++++++.... +.....-.++|...+|.|.+ +++|-.+..+.++|++.. +...+. .+.=.
T Consensus 254 esnLyl~~~~e~~-----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN 319 (561)
T COG5354 254 ESNLYLLRITERS-----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN 319 (561)
T ss_pred cceEEEEeecccc-----------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence 3456777766321 11222456899999999876 666778999999999876 433332 34445
Q ss_pred EEEEEccCCeEEeeecC
Q 045370 203 NLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 203 ~l~~~~~~~~l~~~~~~ 219 (350)
.+.|+|.+++++.++-+
T Consensus 320 T~~fsp~~r~il~agF~ 336 (561)
T COG5354 320 TIFFSPHERYILFAGFD 336 (561)
T ss_pred cccccCcccEEEEecCC
Confidence 56688888877776654
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=5.4e-07 Score=70.87 Aligned_cols=72 Identities=31% Similarity=0.480 Sum_probs=60.1
Q ss_pred CceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEE
Q 045370 107 QAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCL 182 (350)
Q Consensus 107 ~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~i 182 (350)
..|.+++-+|.. +.+++|+.||.+-+||.++.. .+...+..|..+|..+.|+|.. |+++++||.+..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 358888999955 466778889999999999643 3334677899999999999976 999999999999
Q ss_pred EECCC
Q 045370 183 WDVTR 187 (350)
Q Consensus 183 wd~~~ 187 (350)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99875
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.1e-05 Score=73.72 Aligned_cols=182 Identities=16% Similarity=0.228 Sum_probs=123.1
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+|++.+..+|.|+.+|.|.+.+-. ......+.++...+....|.-....+|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~ 81 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLF 81 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhhcccCceEEE
Confidence 578889999999999999888755 3444566677666444445554557888
Q ss_pred EEeCCCc-----EEEEeCCCC------ceE---EEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370 82 SSSLDAT-----CKVWDLGSG------ILI---QTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED 142 (350)
Q Consensus 82 s~~~d~~-----v~vwd~~~~------~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 142 (350)
+.+.|+. |++|+++.- .++ +.++ .+.++.+++++.+-..+++|-.+|.|..+.=.-..-
T Consensus 82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-- 159 (933)
T KOG2114|consen 82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-- 159 (933)
T ss_pred EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc--
Confidence 8777764 899998642 233 1222 246789999999999999999999999875331110
Q ss_pred ccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE-EEEeccCCCceeEEEEEccCC-eEEeee
Q 045370 143 HFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVS-IRRFNHKKGVVTNLVVIRQSS-LLSEVS 217 (350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~-~l~~~~ 217 (350)
..........-..+|+.+++..++ ++++. -..|.+|.+....+ ...+..|..++.|..|++... ++++++
T Consensus 160 ----rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 160 ----RGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred ----cccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 111222233345799999998887 23333 44789999985443 444677788999999998766 555444
Q ss_pred c
Q 045370 218 N 218 (350)
Q Consensus 218 ~ 218 (350)
+
T Consensus 235 e 235 (933)
T KOG2114|consen 235 E 235 (933)
T ss_pred c
Confidence 3
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=3.6e-07 Score=51.40 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=33.3
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEe
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWD 93 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd 93 (350)
++..+.+|...|.+++|.| ++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4667889999999999977 578999999999999997
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=7.6e-07 Score=81.58 Aligned_cols=145 Identities=18% Similarity=0.232 Sum_probs=106.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
.++++|.+|...|+|.+-|.. ....+..+..|++.|.++.. .|+.|++||
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~---------------------------s~~~iht~~aHs~siSDfDv---~GNlLitCG 234 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPN---------------------------SFETIHTFDAHSGSISDFDV---QGNLLITCG 234 (1118)
T ss_pred ecCcEEEeecccceEEeecCC---------------------------cCceeeeeeccccceeeeec---cCCeEEEee
Confidence 356777777777888777776 57778899999999998765 567889887
Q ss_pred C---------CCcEEEEeCCCCceEEEEecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 85 L---------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 85 ~---------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
. |..|+|||++.-+.+.-+..+....-+.|+|. ...+++++..|...+-|...... ....+..+
T Consensus 235 ~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN------P~~~~~~v 308 (1118)
T KOG1275|consen 235 YSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN------PPAGVKMV 308 (1118)
T ss_pred cccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC------CccceeEE
Confidence 6 45689999998776665555555567788884 45788888899999988432211 11112233
Q ss_pred eccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370 155 KGHNGSITALAFSASH--LISASEDKTVCLWDV 185 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~ 185 (350)
......+..+.+++++ ++.|..+|.|.+|--
T Consensus 309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3445569999999998 999999999999963
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.6e-06 Score=71.23 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=69.0
Q ss_pred CCceeEEEEcCCCcEEEEEccC---CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEE---EeCC
Q 045370 106 PQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS---ASED 177 (350)
Q Consensus 106 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s---~~~d 177 (350)
...|...+|.|.|+.+++.+.+ .++.+|.+.+... ....+..+.. ...+.+.|+|.| ++. +|..
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~------~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK------KPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCC------chhhhhhhcc--cccceEEEcCCCcEEEEEEecccc
Confidence 3567888999999988776543 5788888774111 1112222322 457889999999 332 3467
Q ss_pred CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 178 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
|.+.++|+....+...-.......+.+.|.|.|+|+++++..
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 899999998422222222222456788999999999987764
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.52 E-value=7.2e-05 Score=61.89 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=114.9
Q ss_pred eecCCCCEEEEEe-----CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370 2 VFSDDGFLLISGS-----DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG 76 (350)
Q Consensus 2 ~~s~dg~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 76 (350)
.||+||++|++.= ..|.|-|||.... ...+..+..|.-....+.+.+ +
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--------------------------~~ri~E~~s~GIGPHel~l~p-D 109 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARG--------------------------YRRIGEFPSHGIGPHELLLMP-D 109 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCC--------------------------cEEEeEecCCCcChhhEEEcC-C
Confidence 6999999998854 3589999999831 233334444544455555544 3
Q ss_pred CcEEEEE------------------eCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCC-----
Q 045370 77 TTFFVSS------------------SLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDG----- 128 (350)
Q Consensus 77 ~~~l~s~------------------~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg----- 128 (350)
+..|+.+ .-+-++.+.|..+|+++.... |.-.++.++++++|..++..-..|
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 3333332 223456677788888877633 455799999999987766654333
Q ss_pred --eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCCCceeE
Q 045370 129 --RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN 203 (350)
Q Consensus 129 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 203 (350)
.|-+++.... .... .-+......-.+.+-+|++++++ + +|+-..+.+.+||..+++.+..... ..+..
T Consensus 190 ~PLva~~~~g~~--~~~~---~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cG 262 (305)
T PF07433_consen 190 PPLVALHRRGGA--LRLL---PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACG 262 (305)
T ss_pred CCeEEEEcCCCc--ceec---cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceee
Confidence 2333332210 0000 00000122345789999999997 4 4555778999999999999887653 34667
Q ss_pred EEEEccCCeEEeeecCcccccc
Q 045370 204 LVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 204 l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
++-.+++ +++ ++..+.++..
T Consensus 263 va~~~~~-f~~-ssG~G~~~~~ 282 (305)
T PF07433_consen 263 VAPTDDG-FLV-SSGQGQLIRL 282 (305)
T ss_pred eeecCCc-eEE-eCCCccEEEc
Confidence 7777777 555 5555555544
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=8e-05 Score=61.46 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=89.9
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec------CCceeEEEEcCCCcEEEEEccC--------CeEEE
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY------PQAVTAIAFHPGEQLLFAGSID--------GRIFV 132 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d--------g~i~i 132 (350)
..++++..+++.+ +.+.. +.+.++|+.+++....... ....+.++++|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677776456554 44444 4456669999876555432 2458899999999977765433 45766
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCC--c-----eEEEEeccCCCcee
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTR--R-----VSIRRFNHKKGVVT 202 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~--~-----~~~~~~~~~~~~v~ 202 (350)
++.. +.. ..+...-...+.|+|+|++ | ++-+..+.|..|++.. . +.+..+....+..-
T Consensus 120 ~~~~-~~~-----------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 120 IDPD-GKV-----------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EETT-SEE-----------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred ECCC-CeE-----------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 6665 221 1222334567899999998 4 5666788899999853 2 12222332233578
Q ss_pred EEEEEccCCeEEeeecCcccccc
Q 045370 203 NLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 203 ~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
.+++..+|++.++....++++.+
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEE
Confidence 89999999988866555655544
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=2.9e-06 Score=68.58 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=102.7
Q ss_pred eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce----EEEEec-----CCceeEEEEcCCC-cEEEEEccCCe
Q 045370 60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL----IQTQVY-----PQAVTAIAFHPGE-QLLFAGSIDGR 129 (350)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~ 129 (350)
...|.-.|.++.+.+ +...++++ .|-.|.+|++..-.. +-.-+| ..-|++..|+|.. +.+.-.+..|.
T Consensus 168 aNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 168 ANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred cccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 367888999999976 45555554 578899999874321 111222 2358899999954 45556677899
Q ss_pred EEEEeCCcccccccc------ccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCC---
Q 045370 130 IFVSPLKFLLLEDHF------IVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKK--- 198 (350)
Q Consensus 130 i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~--- 198 (350)
|++-|++...+.... ...+....-+.+....|..+.|+++| ++.+-.--+|+|||.+. ..++.++..|.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH
Confidence 999999954432211 01111122334455788999999999 55555556899999986 45677775442
Q ss_pred ---------Cce---eEEEEEccCCeEEeeecC
Q 045370 199 ---------GVV---TNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 199 ---------~~v---~~l~~~~~~~~l~~~~~~ 219 (350)
..| ..+.|+.+.+.+++|+..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 122 346778888888777765
No 295
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.46 E-value=7.7e-05 Score=63.81 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=105.6
Q ss_pred CeecCCCCEEEEEe-C-CCcEEEEeCccccccccccccccc-------------cccccEEEeecccccc-ceeee-ccc
Q 045370 1 MVFSDDGFLLISGS-D-DGMICVWSMTRLLKQTSELMHHSD-------------QLDQRLIEMELRSLRS-LLHYS-LEH 63 (350)
Q Consensus 1 i~~s~dg~~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~-~~h 63 (350)
+++||||++|+... . +..|.+.|+.+.........+... ..++.+........+. ..... ..+
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999998776 3 689999999863322211111100 1122222221111111 11110 011
Q ss_pred c--CCceEE-EEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEe--------cCCceeEEEEcCCCcEEEEEc--
Q 045370 64 K--SSVTGL-LTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQV--------YPQAVTAIAFHPGEQLLFAGS-- 125 (350)
Q Consensus 64 ~--~~v~~~-~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~--------~~~~v~~~~~~~~~~~l~~~~-- 125 (350)
. .++..= .|.+.++.++..... |+|.+.|+.... ....+. .++...-++++|+++.+++..
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1 111000 234435666555554 999999965432 222221 223344599999999888843
Q ss_pred --------cCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEe-CCCcEEEEECCCceEEEE
Q 045370 126 --------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISAS-EDKTVCLWDVTRRVSIRR 193 (350)
Q Consensus 126 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~-~dg~v~iwd~~~~~~~~~ 193 (350)
..+.|.++|..+.+... .+.. ...+..++++|++ |++.+ .++.|.++|..+++.+.+
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~----------~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLR----------KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEE----------EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 22579999988654332 3322 3478899999998 55555 678899999999999999
Q ss_pred ec
Q 045370 194 FN 195 (350)
Q Consensus 194 ~~ 195 (350)
+.
T Consensus 338 i~ 339 (352)
T TIGR02658 338 VN 339 (352)
T ss_pred ec
Confidence 84
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.46 E-value=1.2e-06 Score=72.89 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=72.3
Q ss_pred cceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370 55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFV 132 (350)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 132 (350)
.......+|-.-+..+++++ ++.+++++..|..|++-.+..-..+.. ++|..-|..++.-++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 44455679999999999976 668999999999999988876666655 579999999999754 45899999999999
Q ss_pred EeCCccccccc
Q 045370 133 SPLKFLLLEDH 143 (350)
Q Consensus 133 ~d~~~~~~~~~ 143 (350)
||+.+++..+.
T Consensus 220 Wd~~sgk~L~t 230 (390)
T KOG3914|consen 220 WDITSGKLLDT 230 (390)
T ss_pred EecccCCcccc
Confidence 99998876643
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.4e-06 Score=73.68 Aligned_cols=180 Identities=17% Similarity=0.122 Sum_probs=125.5
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC-
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL- 85 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~- 85 (350)
.+++.+++.||.++.|.-.. -.....+..+..|...|.+++.+. ++.++.|++.
T Consensus 20 a~fiiqASlDGh~KFWkKs~------------------------isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSR------------------------ISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDP 74 (558)
T ss_pred hheEEeeecchhhhhcCCCC------------------------ccceeehhhhHHHHHHHHhhhccc-cceeEeeccCc
Confidence 46889999999999997551 012344566778889999887744 7788888777
Q ss_pred CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc----EEEEE-ccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ----LLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
|..++++|+.+-..+.-+........+.|..... .+++. ..+|.+.++|-....+ +....-.-|..+
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sP 146 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSP 146 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCc
Confidence 9999999999876665554444334444433222 44443 3569999999875322 222344568999
Q ss_pred eEEEEecCCe--EEEEeCCCcEEEEECCC------ceEE---------EEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 161 ITALAFSASH--LISASEDKTVCLWDVTR------RVSI---------RRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~------~~~~---------~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
|.++.+++.+ +++....|.|.-|.... .... ..+....+...++.|+|++..+.+-+.+
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 9999999988 88888889999998762 1111 1222245678999999999999877654
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2e-05 Score=65.98 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=59.8
Q ss_pred CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
|+|||..+ ++..++.+.+|+|.|++ +......+..| ..+++++|.-++.++
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dle---------------------------t~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLE---------------------------TSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred hccCccccceeeeeccCceEEEEecc---------------------------cceeeeheecc-CCceeeeeccCCcce
Confidence 57999877 78899999999999999 45666666677 899999999888899
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 045370 80 FVSSSLDATCKVWDLGSG 97 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~ 97 (350)
++.|...|.|.+||++..
T Consensus 251 IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eEEeccCceEEEEEccCC
Confidence 999999999999999853
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.2e-06 Score=71.60 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=108.7
Q ss_pred eecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC---
Q 045370 2 VFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--- 77 (350)
Q Consensus 2 ~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--- 77 (350)
+.|.||.++.|++. |..++++|+++... .....+..-.+. +.|....+
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm-------------------------inmiKL~~lPg~---a~wv~skGd~~ 111 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDM-------------------------INMIKLVDLPGF---AEWVTSKGDKI 111 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccch-------------------------hhhcccccCCCc---eEEecCCCCee
Confidence 45778888999787 99999999983110 001111111111 22222222
Q ss_pred -cEEEEEeCCCcEEEEeCCCCceEE-E--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc-cccccc----ccccc
Q 045370 78 -TFFVSSSLDATCKVWDLGSGILIQ-T--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF-LLLEDH----FIVGE 148 (350)
Q Consensus 78 -~~l~s~~~d~~v~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~----~~~~~ 148 (350)
.+-++.-.++.+.++|-....+.. . --|..+|.++.+.+.+..+++....|.|..|.... .+.... .....
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e 191 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE 191 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc
Confidence 233444567899999976544222 2 23889999999999999999999999999999873 111111 01112
Q ss_pred ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370 149 DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~ 194 (350)
..+..+........++.|+|++ +.+-+.|..|++++..+++.+..+
T Consensus 192 TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 192 TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 2223444556788999999999 888889999999999998766554
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=71.91 Aligned_cols=183 Identities=14% Similarity=0.192 Sum_probs=126.9
Q ss_pred EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--C-cEEEEEeC
Q 045370 9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--T-TFFVSSSL 85 (350)
Q Consensus 9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~-~~l~s~~~ 85 (350)
+||++...|.|.+||.. .......+..|.+++..++|.+.. . .+++.-..
T Consensus 81 liAsaD~~GrIil~d~~---------------------------~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFV---------------------------LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred eEEeccccCcEEEEEeh---------------------------hhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 67788888999999998 566677788899999999998643 2 56777777
Q ss_pred CCcEEEEeCCCCceEEEEecCC-ceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC----
Q 045370 86 DATCKVWDLGSGILIQTQVYPQ-AVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG---- 159 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (350)
..+|.+|+..+|+......... ...|+.++| +.+++..-+..|.+.+-+.-....... ..+.+.....|..
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~---pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV---PGKEFQITSDHSDLAHL 210 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC---CceeEEEecCccchhhh
Confidence 8899999999999988866444 455699999 677777777788887776543221110 0111111111110
Q ss_pred ---------------------ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC--eEE
Q 045370 160 ---------------------SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS--LLS 214 (350)
Q Consensus 160 ---------------------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~ 214 (350)
....++|+|.. ++-......+.++|+.-..++.......+.+.-+.+-|+++ .|+
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 12234567766 44445567899999999999988887777778888888764 677
Q ss_pred eeecCcc
Q 045370 215 EVSNCQR 221 (350)
Q Consensus 215 ~~~~~~~ 221 (350)
+.-.+++
T Consensus 291 clH~nG~ 297 (1062)
T KOG1912|consen 291 CLHSNGR 297 (1062)
T ss_pred EEecCCe
Confidence 6666654
No 301
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=3.6e-06 Score=74.08 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=71.3
Q ss_pred cEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE
Q 045370 44 RLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA 123 (350)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 123 (350)
.+|++...+......+.......|.+++++| +.+.++.|+.||+|.+||...+.... ....-.++.++|||+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEE
Confidence 3444433333333344456788899999866 66789999999999999998774443 355567889999999999999
Q ss_pred EccCCeEEEEeCCccc
Q 045370 124 GSIDGRIFVSPLKFLL 139 (350)
Q Consensus 124 ~~~dg~i~i~d~~~~~ 139 (350)
|+..|.+.+||+.-..
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 9999999999987443
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=3.8e-07 Score=81.65 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=111.9
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|+.-...+...+..+.|++||... ...++..+.+|...|..+.|...-...+.
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~--------------------------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRK--------------------------GSTPLCSLKGHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccC--------------------------CCcceEEecccceeeehHHHhhhhhhhhc
Confidence 3444333333344556788888773 45677788889999999998765556789
Q ss_pred EEeCCCcEEEEeCCCCc--eEEEEecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 82 SSSLDATCKVWDLGSGI--LIQTQVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+++.||+|++||..... ..+.+....+|..-++-|-|. ++.---.+..+.+++.++............++..+.||
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred ccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 99999999999987543 344455667788888888443 33333334467777766655444333456788899999
Q ss_pred CCceEEEEecC-----------Ce-EEEEeCCCcEEEEECCC
Q 045370 158 NGSITALAFSA-----------SH-LISASEDKTVCLWDVTR 187 (350)
Q Consensus 158 ~~~i~~~~~~~-----------~~-l~s~~~dg~v~iwd~~~ 187 (350)
...|....|-. +. |++-+.|..+++|-+.+
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99998877742 12 99999999999997753
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00013 Score=64.88 Aligned_cols=140 Identities=12% Similarity=0.003 Sum_probs=87.5
Q ss_pred CceEEEEeeCCCcEEEEEeC---CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccC--CeEEEEeCCccc
Q 045370 66 SVTGLLTISGGTTFFVSSSL---DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSID--GRIFVSPLKFLL 139 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--g~i~i~d~~~~~ 139 (350)
....-.|+|.+...++..+. +..|.++|+.+++........+......|+|||+.++. .+.+ ..|+++|+..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 66778887644333443333 35689999998887666556666777889999986654 3333 568888876432
Q ss_pred cccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEE
Q 045370 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 214 (350)
. ..+..+........|+|+| |+-.+ ..+ .|+++|+.+++....... +. ....|+|+|+.++
T Consensus 269 ~-----------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia 334 (419)
T PRK04043 269 L-----------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIV 334 (419)
T ss_pred E-----------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEE
Confidence 1 1233333333456799999 33333 333 688889988766333221 11 1248999999888
Q ss_pred eeecC
Q 045370 215 EVSNC 219 (350)
Q Consensus 215 ~~~~~ 219 (350)
..+..
T Consensus 335 ~~~~~ 339 (419)
T PRK04043 335 YSSRE 339 (419)
T ss_pred EEEcC
Confidence 66543
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.36 E-value=6e-05 Score=66.53 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=85.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
..++.++.+|.+..||..+|+.+........ .... ..+..+++++.+|.+..+|..+++...... .+.
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------~~~-- 309 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND-------ELK-- 309 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc-------ccc--
Confidence 4577788899999999999988776553221 1222 256788888899999999998765432110 000
Q ss_pred CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
...........+.+++++.+|.|+++|..+++.+.++..+...+..--...+++ |+.++.++.+.
T Consensus 310 ~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~ 374 (377)
T TIGR03300 310 YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLY 374 (377)
T ss_pred CCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEE
Confidence 111222223333488899999999999999999999886554433222223344 44466666544
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.1e-05 Score=72.29 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=118.2
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
+++..+++++.|+.-|.+.+|+-.. +.....-.+....+.++...++...++|
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~---------------------------~~~~~~~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHT---------------------------GEMRKLKNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred EeecCCceEEEecccceEEEEecCc---------------------------hhhhcccccCccceEEEEEecchhHhhh
Confidence 4566789999999999999998762 2222222222445555555566778899
Q ss_pred EEeCCCcEEEEeCCCCceEEE-------EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 82 SSSLDATCKVWDLGSGILIQT-------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
.|+..|.|.++-+..+..... ..|+..|++++|++++..+++|...|.|..-.+.... ........+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~i 166 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ------AFLSKSQEI 166 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh------hhcccccee
Confidence 999999999998876432211 1367889999999999999999999999998887511 011112233
Q ss_pred eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec--cCCC-ceeEEEEEcc-----CCeEEeeecCcccccc
Q 045370 155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN--HKKG-VVTNLVVIRQ-----SSLLSEVSNCQRKLKK 225 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~-~v~~l~~~~~-----~~~l~~~~~~~~~~~~ 225 (350)
..-...|..+.+.... |++...-. .++++..+. +..+. .-.+ .-...+|-|. ...|+++--..|+|..
T Consensus 167 l~~ds~IVQlD~~q~~LLVStl~r~--~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWea 243 (726)
T KOG3621|consen 167 LSEDSEIVQLDYLQSYLLVSTLTRC--ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEA 243 (726)
T ss_pred eccCcceEEeecccceehHhhhhhh--heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEe
Confidence 3445677777777666 44444332 345554332 22221 0111 1234455553 3466666666677766
Q ss_pred c
Q 045370 226 D 226 (350)
Q Consensus 226 ~ 226 (350)
.
T Consensus 244 d 244 (726)
T KOG3621|consen 244 D 244 (726)
T ss_pred e
Confidence 5
No 306
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=6e-05 Score=65.84 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=112.7
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
+.|||-|.||+|-..-| |.+|-=.. -..+.. ..| ..|.-+.|+| ...+|
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~---------------------------f~r~~R-F~H-p~Vq~idfSP-~EkYL 264 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGES---------------------------FDRIQR-FYH-PGVQFIDFSP-NEKYL 264 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCcc---------------------------HHHHHh-ccC-CCceeeecCC-ccceE
Confidence 47999999999998766 88995431 111111 123 4466677755 56788
Q ss_pred EEEeC-----------CCcEEEEeCCCCceEEEEec---CCc-eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 81 VSSSL-----------DATCKVWDLGSGILIQTQVY---PQA-VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 81 ~s~~~-----------d~~v~vwd~~~~~~~~~~~~---~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
+|-+. ...++|||+.+|...+.+.. +.. -.-..|+.|+++++.-.. ..|.||+..+..+.....
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS 343 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence 87543 25799999999998888664 222 224679999999998776 568899887654333211
Q ss_pred cccccceeeeccCCceEEEEecCCe--EEEEe--C---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370 146 VGEDQHSVLKGHNGSITALAFSASH--LISAS--E---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSE 215 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~--~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 215 (350)
-....|....|+|.. ||--. . -..+.+-.+.+++.+++-.-+.-.=..|.|-.+|.+|+.
T Consensus 344 ----------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 344 ----------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred ----------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence 123567888899987 33222 1 135777777777777766554444445667777777764
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=6.9e-05 Score=68.32 Aligned_cols=144 Identities=14% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC----CCcEEE
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG----GTTFFV 81 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~ 81 (350)
+|.+++|||.||+|.|-.+-+ ... .+......++.++++.|. ....++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~---------------------------~~~-~~~~df~rpiksial~Pd~~~~~sk~fv 133 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFT---------------------------DDE-ITQYDFKRPIKSIALHPDFSRQQSKQFV 133 (846)
T ss_pred CCceEEEecCCCcEEEeeccC---------------------------Ccc-ceeEecCCcceeEEeccchhhhhhhhee
Confidence 699999999999999988762 221 122345678888888764 235789
Q ss_pred EEeCCCcEEEEeCC---CCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 82 SSSLDATCKVWDLG---SGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 82 s~~~d~~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
+||.-| +.++.-+ ....+......++|.++.| .|++|+=++.+| |++||................ .-..
T Consensus 134 ~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~----~R~e 205 (846)
T KOG2066|consen 134 SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS----VRPE 205 (846)
T ss_pred ecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCC----CCcc
Confidence 999888 7776633 2223333456789999999 588888888665 899999865543321111100 0011
Q ss_pred CceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370 159 GSITALAFSASH-LISASEDKTVCLWDVT 186 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~ 186 (350)
.....+.|.++. |+.|-.| +|+|..++
T Consensus 206 ~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 223457788877 6666655 68888777
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=3.2e-07 Score=80.89 Aligned_cols=183 Identities=15% Similarity=0.185 Sum_probs=119.2
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC--
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL-- 85 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-- 85 (350)
.+++.|..+|.|.+-.+... ...-.....+|..+.++++|.+-+.++||.|-.
T Consensus 71 cIlavG~atG~I~l~s~r~~-------------------------hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHP-------------------------HDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred hhhhhccccCceEEeecCCc-------------------------ccccceecccccccccccccccccHHHHHhhhhhh
Confidence 46788888899988877621 111244567888999999999888888888743
Q ss_pred --CCcEEEEeCCCC--ceEEE--E--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 86 --DATCKVWDLGSG--ILIQT--Q--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 86 --d~~v~vwd~~~~--~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
|..+.+||+.++ .+... + .......+++|..+.+++.+|.....+.++|++...... ..-.
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-----------~svn 194 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-----------SSVN 194 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-----------hhhh
Confidence 567999999876 22222 1 123456689999899999999999999999998432111 1112
Q ss_pred CCceEEEEecC-Ce-EEEEeCCCcEEEEE-CCCc-eEEEEeccCCC----ceeEEEEEccCC-eEEeeecCccccccc
Q 045370 158 NGSITALAFSA-SH-LISASEDKTVCLWD-VTRR-VSIRRFNHKKG----VVTNLVVIRQSS-LLSEVSNCQRKLKKD 226 (350)
Q Consensus 158 ~~~i~~~~~~~-~~-l~s~~~dg~v~iwd-~~~~-~~~~~~~~~~~----~v~~l~~~~~~~-~l~~~~~~~~~~~~~ 226 (350)
+..+..+...| .. .++...||.|.+|| .++- .++..+..... .+..++|+|... .+++...+...++..
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 23445566666 33 55556699999999 4432 23333332222 489999999754 455555554444443
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.22 E-value=0.00046 Score=56.56 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=103.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370 5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS 84 (350)
Q Consensus 5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 84 (350)
+++.++++++.++.+..||..+ +..+..... ...+...... .+..++.++
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t---------------------------G~~~W~~~~-~~~~~~~~~~--~~~~v~v~~ 83 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT---------------------------GKVLWRFDL-PGPISGAPVV--DGGRVYVGT 83 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT---------------------------SEEEEEEEC-SSCGGSGEEE--ETTEEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCC---------------------------CCEEEEeec-cccccceeee--ccccccccc
Confidence 3567788888999999999873 332222221 1111111111 233466666
Q ss_pred CCCcEEEEeCCCCceEEEE-ecCC----ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc-eeeeccC
Q 045370 85 LDATCKVWDLGSGILIQTQ-VYPQ----AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLKGHN 158 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~-~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (350)
.++.|..+|..+|+.+... .... ..........+..++++..++.|..+|++++............. ..+....
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 8889999999999998884 3221 11222233347888888889999999999877644322211000 0000001
Q ss_pred CceEEEEecCCeEEEEeCCCc-EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 159 GSITALAFSASHLISASEDKT-VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 159 ~~i~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
.....+.+..+.++.++.++. +.+ |+.+++.+.... ...+.. ...+.+..|++++.++.+.
T Consensus 164 ~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp TEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred ccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEE
Confidence 111233333334777777775 555 999999776443 222222 2456777777677554443
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.1e-06 Score=80.35 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=118.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++||.+.++|+.|+..|.|++|++. .+........|..+|+-+.-+..+...|
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~---------------------------sG~~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVS---------------------------SGSMEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEcc---------------------------CccccccccccccccccccccCCcceee
Confidence 4799999999999999999999999 4666677788999999987655333444
Q ss_pred EEEeCCC-cEEEEeCCC-CceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 81 VSSSLDA-TCKVWDLGS-GILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 81 ~s~~~d~-~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
.+++... -..+|++.. +...+++. .-.++.|+..-..-+.|+......+||+.++.....+... .. +..
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-----~~-~~~ 1230 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-----TV-TSS 1230 (1516)
T ss_pred eeccccCchHHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-----ch-hhh
Confidence 4444444 568999875 44444443 3457888876555566666678899999987654432211 00 111
Q ss_pred CceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370 159 GSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 217 (350)
-.-++..|+|.. |+- .|| .+||.+..+.++.|...... -.-.|+|.|.-++..+
T Consensus 1231 y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred hhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 222677888887 553 355 48999988878777644322 2235888887776544
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-05 Score=66.14 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=99.9
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeC
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~ 135 (350)
...+..|...|.+++|+|.+..++..++.+..|+|.|+.+..++..+.....+++++|+-+. ++|++|..+|.|.+||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 33667888999999998876668899999999999999999988888777999999999865 57889999999999999
Q ss_pred CccccccccccccccceeeeccCCceEEEEe------cCC-eEEEEeCCCcEEEEECCC----ceEEEEeccCCCceeEE
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF------SAS-HLISASEDKTVCLWDVTR----RVSIRRFNHKKGVVTNL 204 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~-~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~l 204 (350)
+........... .-...+|..++. .+. |++++..- .+..|.+.- ..++..+. ..+...++
T Consensus 266 R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele-~pG~cism 336 (463)
T KOG1645|consen 266 RQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELE-PPGICISM 336 (463)
T ss_pred cCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccC-CCcceeee
Confidence 965432211111 011223333332 222 35555433 256776542 22222332 35566677
Q ss_pred EEEccCCeEEee
Q 045370 205 VVIRQSSLLSEV 216 (350)
Q Consensus 205 ~~~~~~~~l~~~ 216 (350)
++++..+.++..
T Consensus 337 qy~~~snh~l~t 348 (463)
T KOG1645|consen 337 QYHGVSNHLLLT 348 (463)
T ss_pred eecCccceEEEE
Confidence 777755554433
No 312
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.19 E-value=0.00036 Score=67.97 Aligned_cols=154 Identities=10% Similarity=0.128 Sum_probs=104.5
Q ss_pred cccCCceEEEEeeCCCcEEEEEeCCCcEEEE----eCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVW----DLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 137 (350)
...+.|.++.|.+ +...++.+..+|-|.+. +..+......-.....|.+++|+||+..++.++.++.+.+.+...
T Consensus 73 ~~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 3457899999987 44567888889999999 666655544455778999999999999999999999888865321
Q ss_pred ccc-----------------------cccccc-ccc--------c------ceeeeccCCceEEEEecCCe--EEEEeC-
Q 045370 138 LLL-----------------------EDHFIV-GED--------Q------HSVLKGHNGSITALAFSASH--LISASE- 176 (350)
Q Consensus 138 ~~~-----------------------~~~~~~-~~~--------~------~~~~~~~~~~i~~~~~~~~~--l~s~~~- 176 (350)
... ...+-. ..+ + ...+. +...-..++|-.|| +|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 100 000000 000 0 01122 34456788999999 555553
Q ss_pred --C---CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 177 --D---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 177 --d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
. ..+|||+-. |.+..+-+.-.+--.+++|-|.|.++|+...
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 2 579999876 7666655545555677899999999997765
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.17 E-value=0.00036 Score=57.18 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=77.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-ccccccceeee
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-IVGEDQHSVLK 155 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~ 155 (350)
+..+++++.++.|..||..+|+.+........+.... ...+..+++++.++.++.+|..+++..... .... .
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~------~ 108 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS------P 108 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS------C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc------c
Confidence 3456777899999999999999998877655543332 224556676777889999998877654431 1110 0
Q ss_pred cc-CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370 156 GH-NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKK 198 (350)
Q Consensus 156 ~~-~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 198 (350)
.. ........+..+.++.+..++.|..+|+.+|+.+.......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 01 11122333444448888889999999999999998886533
No 314
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.17 E-value=0.0003 Score=68.50 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=109.2
Q ss_pred CeecCCCCEEEEEeC------CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370 1 MVFSDDGFLLISGSD------DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS 74 (350)
Q Consensus 1 i~~s~dg~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 74 (350)
|+|-.||.|+|+.+. -+.|+||+-+ +.+......-.+--.+++|-|
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----------------------------G~L~stSE~v~gLe~~l~WrP 266 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----------------------------GELQSTSEPVDGLEGALSWRP 266 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC----------------------------ceEEeccccCCCccCCccCCC
Confidence 579999999998875 2589999877 222222222223334567855
Q ss_pred CCCcEEEEEeC---CCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370 75 GGTTFFVSSSL---DATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 75 ~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.|+++|+.-. ...|.+|.- +|-.-..+. ....|..+.|++++..|+....|. |.+|-..+....-+.
T Consensus 267 -sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq-- 341 (928)
T PF04762_consen 267 -SGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ-- 341 (928)
T ss_pred -CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE--
Confidence 7788887654 344666663 343333332 345799999999999999977655 999988765432111
Q ss_pred ccccceeee-ccCCceEEEEecCCe---EEEEeCCCcEEEEECC----Cc--------eEEEEec---------------
Q 045370 147 GEDQHSVLK-GHNGSITALAFSASH---LISASEDKTVCLWDVT----RR--------VSIRRFN--------------- 195 (350)
Q Consensus 147 ~~~~~~~~~-~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~----~~--------~~~~~~~--------------- 195 (350)
.+. .....+..+.|+|.. |...+.+|.+..++.. .+ ..+..+.
T Consensus 342 ------ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 342 ------EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred ------EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 111 112234448888765 6666665665554431 11 0111111
Q ss_pred --------cCCCceeEEEEEccCCeEEeeecCc
Q 045370 196 --------HKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 196 --------~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
....+|..++|++++..+++-..++
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence 1246899999999987666555555
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.17 E-value=0.0017 Score=52.49 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=112.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee---eccccCCceEEEEeeCCC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY---SLEHKSSVTGLLTISGGT 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~ 77 (350)
++.+.||++||.- .|..|.|-..... -...+.. .....-.-.-++|+ +++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd-------------------------f~si~~kcqVpkD~~PQWRkl~WS-pD~ 55 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDD-------------------------FSSIIGKCQVPKDPNPQWRKLAWS-PDC 55 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCC-------------------------chheeEEEecCCCCCchheEEEEC-CCC
Confidence 3567888888766 5677777665521 1111111 12223344667785 588
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCceeEEEEcCC------CcEEEEEccCCeEEEEeCCccccccc
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQV--------YPQAVTAIAFHPG------EQLLFAGSIDGRIFVSPLKFLLLEDH 143 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~ 143 (350)
.+||.+...|+|+++|+....+. .+. ....|..+.|-+. ...|++...+|.++-|-+..+....-
T Consensus 56 tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 56 TLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY 134 (282)
T ss_pred cEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc
Confidence 99999999999999998854332 322 2345666666542 23567777788888777643211100
Q ss_pred cccccccceeee-ccCCceEEEEecCCe---EEEEeCCC----------cEEEEECCCceEEE-----------------
Q 045370 144 FIVGEDQHSVLK-GHNGSITALAFSASH---LISASEDK----------TVCLWDVTRRVSIR----------------- 192 (350)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~---l~s~~~dg----------~v~iwd~~~~~~~~----------------- 192 (350)
...-...+. .+...|+++.++|.. ++.|++.. -+.-|.+-++.+-.
T Consensus 135 ---~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 135 ---QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred ---eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 000111222 247789999999986 44444432 25556443221100
Q ss_pred ---Ee---------ccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370 193 ---RF---------NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS 230 (350)
Q Consensus 193 ---~~---------~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (350)
.+ ......|..|..||||.+|++...++.+ .+|.++.
T Consensus 212 ~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l-sLW~iPs 260 (282)
T PF15492_consen 212 GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL-SLWEIPS 260 (282)
T ss_pred ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE-EEEecCc
Confidence 00 0124468888899999999877666543 3444443
No 316
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.13 E-value=6e-05 Score=70.62 Aligned_cols=138 Identities=11% Similarity=0.156 Sum_probs=94.7
Q ss_pred CCcEEEEE-eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCC-------CcEEEEEccCCeEEEEeCCccccccccccc
Q 045370 76 GTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-------EQLLFAGSIDGRIFVSPLKFLLLEDHFIVG 147 (350)
Q Consensus 76 ~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 147 (350)
+..+|+.- .....|.-.|+..|+++..+.....+.-..+.|+ ...-+.|-.+..+..||.|... ... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~-v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKL-VD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cce-ee
Confidence 34444433 4567899999999999999875554444555553 2345667778899999999432 000 00
Q ss_pred cccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecC
Q 045370 148 EDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
... ..........|++-+.+| ||+|+.+|.||+||-- |...++ +++-..||..|+.+.||+++++++..
T Consensus 569 -~~~-k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 569 -SQS-KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred -ccc-cccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 001 111344568899999999 9999999999999943 333333 45667899999999999999876654
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=5.7e-05 Score=68.60 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=106.7
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCC------------cEEEEEccCCeEEEE
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGE------------QLLFAGSIDGRIFVS 133 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~------------~~l~~~~~dg~i~i~ 133 (350)
-.++.|++ .| +++-|+ ...|.+-|..+-+.++.+. |+..|+.+.|.|-. -.|++++..|.|.+|
T Consensus 18 ~~A~Dw~~-~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSP-SG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCc-cc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 45566755 33 455554 5679999999999888876 67789999998721 257778888999999
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCCe------EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 207 (350)
|+..... +..+..|..++..++|-+.. |++-....+|.+|+..+|+.+.........+.++.+.
T Consensus 95 d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 95 DFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred Eehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence 9985433 23566788889999997643 7777778899999999999999888666778888888
Q ss_pred ccC-CeEEeeecCcccccc
Q 045370 208 RQS-SLLSEVSNCQRKLKK 225 (350)
Q Consensus 208 ~~~-~~l~~~~~~~~~~~~ 225 (350)
|-. +.+..-+..+.++..
T Consensus 165 Pfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred CCCcceEEEEccCceEEEE
Confidence 853 444444444444433
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=1.3e-05 Score=72.02 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=90.3
Q ss_pred ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc-----cccccceeeeccCCceEEEEecCCe--EEEEeC
Q 045370 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI-----VGEDQHSVLKGHNGSITALAFSASH--LISASE 176 (350)
Q Consensus 104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~ 176 (350)
+......|+.|+....+|++|+.||.+++..+.+........ ........+.+|...|.-+.|+.+. |-++..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345568899999999999999999999999887643221110 1112234788999999999999887 888899
Q ss_pred CCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCccc
Q 045370 177 DKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRK 222 (350)
Q Consensus 177 dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~ 222 (350)
+|.|.+|-+..++-...+- ...+.|.+++|..+|..++....|+.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 9999999998877554442 346789999999999887766665433
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.00093 Score=60.76 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-----CceEEEEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccc--cccccc
Q 045370 76 GTTFFVSSSLDATCKVWDLGS-----GILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLE--DHFIVG 147 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~--~~~~~~ 147 (350)
++++... .++.|.+.|..+ ...+..+........+.++|||+++++++. +..|.++|+.+.+.. ......
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 3444443 367899999998 467777888899999999999999887765 799999999875421 000000
Q ss_pred cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC----------ceEEEEeccCCCce-----eEEEEEccC
Q 045370 148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR----------RVSIRRFNHKKGVV-----TNLVVIRQS 210 (350)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v-----~~l~~~~~~ 210 (350)
........- .......+|.++| +.|-.-|..|..||+.+ ...+..+..|..+- .+=.-.|+|
T Consensus 365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dg 443 (635)
T PRK02888 365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADG 443 (635)
T ss_pred ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCC
Confidence 001111111 2334456788887 77777899999999876 34555555443332 222347899
Q ss_pred CeEEeeec
Q 045370 211 SLLSEVSN 218 (350)
Q Consensus 211 ~~l~~~~~ 218 (350)
++|++...
T Consensus 444 k~l~~~nk 451 (635)
T PRK02888 444 KWLVSLNK 451 (635)
T ss_pred CEEEEccc
Confidence 99986654
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.00049 Score=57.04 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=101.3
Q ss_pred eEEEEeeCCCcEEEEEeCCCc-EEEEeCCCCceEEEEecCCc---eeEEEEcCCCcEEEEEcc-----CCeEEEEeCCcc
Q 045370 68 TGLLTISGGTTFFVSSSLDAT-CKVWDLGSGILIQTQVYPQA---VTAIAFHPGEQLLFAGSI-----DGRIFVSPLKFL 138 (350)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 138 (350)
..++..|.....++.+-.-|+ ..+||..+++....+..+.. --.-+|++||++|++.-. .|.|-+||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 345666656677777777665 57899999998877653322 226789999999998743 58999999983
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------------------CCcEEEEECCCceEEEEec---
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------------------DKTVCLWDVTRRVSIRRFN--- 195 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------------------dg~v~iwd~~~~~~~~~~~--- 195 (350)
.-..+..+..|.-....+.+.|++ |+++.. +-.+.+.|..+|+++.+..
T Consensus 87 --------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 87 --------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred --------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 233344677777777788889988 555432 2356667888898887743
Q ss_pred -cCCCceeEEEEEccCCeEEeeec
Q 045370 196 -HKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 196 -~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
.|...|..|++.++|..++..-.
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred cccccceeeEEecCCCcEEEEEec
Confidence 36778999999999988774443
No 321
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.07 E-value=0.00015 Score=62.74 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=91.9
Q ss_pred cccCCceEEEEeeCCCcEE-EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCc
Q 045370 62 EHKSSVTGLLTISGGTTFF-VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKF 137 (350)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~ 137 (350)
.-.++|...+|.|....+. ++|-.+-.+.++|++.+ +........=+.+.|+|.+++++.++-| |.+-+||...
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 6689999999977554443 34457788999999866 3333344556788899999999987755 7899999763
Q ss_pred cccccccccccccceeeeccCCceEEEEecCCe--EEE--Ee----CCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS--AS----EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s--~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 209 (350)
... .+..+.+ ....-+.|+|++ +.+ .+ .|..+.|||+...... ..+.+.|.|.
T Consensus 350 rf~---------~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~ 410 (561)
T COG5354 350 RFK---------VAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPS 410 (561)
T ss_pred ceE---------EEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCC
Confidence 211 1112222 234456799999 332 22 3678999998743222 4567778888
Q ss_pred CCeEEeeecC
Q 045370 210 SSLLSEVSNC 219 (350)
Q Consensus 210 ~~~l~~~~~~ 219 (350)
+++..+.+.+
T Consensus 411 ~~~~ttsSs~ 420 (561)
T COG5354 411 GQYVTTSSSC 420 (561)
T ss_pred cccceeeccC
Confidence 8888766655
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=7.1e-06 Score=75.39 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=109.1
Q ss_pred ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccC--CeEEE
Q 045370 56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID--GRIFV 132 (350)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--g~i~i 132 (350)
.+..+..|+...+|++|+. +.++|+.|+..|.|+++++.+|....... |..+|+.+.-+.+|..+++.+.- -...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3456677888899999855 66889999999999999999998877754 88899999988899877765543 35678
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-c---CCCceeEEEE
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-H---KKGVVTNLVV 206 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~---~~~~v~~l~~ 206 (350)
|++.. ...+...+ ..-.++.|+... -+.|.......+||+.++.++.++. + ..-.-....|
T Consensus 1172 W~~~s---------~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1172 WDASS---------TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred hcccc---------ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 88874 12222222 234567887765 3344444578999999998877642 1 1112366789
Q ss_pred EccCCeEEeeecCccccccc
Q 045370 207 IRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~~ 226 (350)
+|+..+++ +++-+|.+.
T Consensus 1239 sP~D~LIl---ndGvLWDvR 1255 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGVLWDVR 1255 (1516)
T ss_pred CCCcceEe---eCceeeeec
Confidence 99998887 455555554
No 323
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.96 E-value=0.00073 Score=59.65 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=71.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
+..++.++.++.+..+|..+|+.+........+.+.-.. .+..++.++.+|.++.||.++++........... .....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA-LTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc-eeecC
Confidence 456778888999999999999988876655443321111 3456777888999999999877654322111100 00001
Q ss_pred cCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370 157 HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 157 ~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
.. ......+.++.+..+|.+..+|+++|+.+.+..
T Consensus 183 ~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 183 SA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 11 111222237778888999999999998876543
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.95 E-value=0.0016 Score=53.17 Aligned_cols=185 Identities=11% Similarity=0.128 Sum_probs=99.1
Q ss_pred CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeCCCc
Q 045370 1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGTT 78 (350)
Q Consensus 1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~ 78 (350)
|+|+|+.+ ++++....+.|..++.+ +..++.+.- ..+-.-+|++.. ++.
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~~----------------------------G~vlr~i~l~g~~D~EgI~y~g-~~~ 77 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSLD----------------------------GKVLRRIPLDGFGDYEGITYLG-NGR 77 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT------------------------------EEEEEE-SS-SSEEEEEE-S-TTE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcCC----------------------------CCEEEEEeCCCCCCceeEEEEC-CCE
Confidence 57889755 56666677787777765 333433322 235567788754 556
Q ss_pred EEEEEeCCCcEEEEeCCCCc----e--EEEEe------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-c
Q 045370 79 FFVSSSLDATCKVWDLGSGI----L--IQTQV------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-I 145 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~----~--~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~ 145 (350)
++++--.++.+.++++.... . ...+. ....+..++|+|.++.|+++-...-..+|.+......... .
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 66665568999999884321 1 11121 3345899999998888888776666666665531100000 0
Q ss_pred cccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCC---------CceeEEEEEccCCeE
Q 045370 146 VGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKK---------GVVTNLVVIRQSSLL 213 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l 213 (350)
...............+.++.++|.. ++-+..+..|..+| .+|+++..+.-.. ...-.|+|.++|.+.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 0000000112233457889999875 66777888999999 6677776654221 246789999999877
Q ss_pred Ee
Q 045370 214 SE 215 (350)
Q Consensus 214 ~~ 215 (350)
++
T Consensus 237 Iv 238 (248)
T PF06977_consen 237 IV 238 (248)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.92 E-value=0.001 Score=53.09 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=87.1
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
+....+++.|+..+.+.--|..+|+.....-....+.+-+.- -|++++.|+..|.+++.+..++.....+..-
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------ 92 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ 92 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence 445678899999999999999999988875555554443332 4778999999999999999987544332211
Q ss_pred eeccCCceE-EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370 154 LKGHNGSIT-ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208 (350)
Q Consensus 154 ~~~~~~~i~-~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 208 (350)
+.|. .....+++ +..|+.|++.+..|.++..++...+...+...+-+..|
T Consensus 93 -----~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 93 -----ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred -----hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 1111 12234444 99999999999999999999988765444444445555
No 326
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.92 E-value=0.002 Score=44.70 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=69.6
Q ss_pred ceEEEEeeCC---CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370 67 VTGLLTISGG---TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH 143 (350)
Q Consensus 67 v~~~~~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 143 (350)
|.+++++.-+ .+.|+.|+.|..|++|+-. ..+..+...+.|.+++-... ..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence 4556555432 3679999999999999854 57777888888999887765 6688888899999998643211
Q ss_pred cccccccceeeeccCCceEEEEec---CCe---EEEEeCCCcEEE
Q 045370 144 FIVGEDQHSVLKGHNGSITALAFS---ASH---LISASEDKTVCL 182 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~---l~s~~~dg~v~i 182 (350)
..+.. ..++++.+. .+| |++|-.+|.|-+
T Consensus 76 ---------RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 ---------RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---------eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 12222 235566543 334 999999998743
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.008 Score=52.88 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=111.4
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccc-cccccc---------cccccccEEEeecccc------ccceeeecccc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT-SELMHH---------SDQLDQRLIEMELRSL------RSLLHYSLEHK 64 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~h~ 64 (350)
|.|+++..-|+.|...|.|.||.+....... ...... -....+.+.+...+.. ..+...+....
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~ 86 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ 86 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence 4678888889999999999999987643332 111111 0112455555543322 12334445568
Q ss_pred CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec---------CCceeEEEEcC-----CC---cEEEEEccC
Q 045370 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY---------PQAVTAIAFHP-----GE---QLLFAGSID 127 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------~~~v~~~~~~~-----~~---~~l~~~~~d 127 (350)
++|++++.+ +=-+++.|..+|.+.|.|++....+..-.. ...++++.|.. |+ -.+++|+..
T Consensus 87 g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 999999874 345899999999999999998887776321 23577888863 33 478899999
Q ss_pred CeEEEEeCCccccccccccccccceeeeccCCceEEEE-ecC----------------------CeEEEEeCCCcEEEEE
Q 045370 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA-FSA----------------------SHLISASEDKTVCLWD 184 (350)
Q Consensus 128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----------------------~~l~s~~~dg~v~iwd 184 (350)
|.+.+|.+.-.. ...+.. ........+.++|..+. ++. .+++....+..++++.
T Consensus 165 G~v~~fkIlp~~-~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 165 GNVLTFKILPSS-NGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp SEEEEEEEEE-G-GG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred CCEEEEEEecCC-CCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999885211 111111 11111124445555554 211 1245555577899999
Q ss_pred CCCceEEEEeccCCCceeEEEEE-----ccCCeEEeeecCc
Q 045370 185 VTRRVSIRRFNHKKGVVTNLVVI-----RQSSLLSEVSNCQ 220 (350)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~l~~~-----~~~~~l~~~~~~~ 220 (350)
..+.+..+......-....+++- ..+..|++-..++
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G 282 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNG 282 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCC
Confidence 98877766655222233444553 2445555444443
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.87 E-value=0.0013 Score=45.58 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=64.5
Q ss_pred ecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 3 FSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 3 ~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
|..|| +.|+.|+.|..|+||+-+ .+.....-.+.|.+++.... ..|+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~------------------------------e~~~Ei~e~~~v~~L~~~~~--~~F~ 57 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD------------------------------EIVAEITETDKVTSLCSLGG--GRFA 57 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC------------------------------cEEEEEecccceEEEEEcCC--CEEE
Confidence 45555 579999999999999755 12222334577777776543 5689
Q ss_pred EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-C--C-cEEEEEccCCeEE
Q 045370 82 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-G--E-QLLFAGSIDGRIF 131 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~ 131 (350)
.+..+|+|-+|+-.. .+...+....+.++.+.. + | ..|++|-.+|.|-
T Consensus 58 Y~l~NGTVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 58 YALANGTVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEecCCEEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999999999998633 333444455566766654 2 2 3788888888774
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0002 Score=64.53 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=83.2
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
....++++.|+.-|.|.+|+-..+....... ..+.+..++++++..+++.|+..|.|.++-+.............
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~--- 118 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP--- 118 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc---
Confidence 3367889999999999999988776554422 34556777889999999999999999999887632221111110
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR 187 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~ 187 (350)
.-..|...|++++|++++ +++|...|+|..-.+.+
T Consensus 119 -~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 -CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 112378999999999999 99999999999888876
No 330
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00047 Score=60.32 Aligned_cols=132 Identities=10% Similarity=0.174 Sum_probs=96.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc-------EEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ-------LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
++.++..-..++-.|+..|+.+........|+-+.+.|+.+ .-+.|-.|..|.-||.+-.... .+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--------kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--------KL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--------ee
Confidence 45566667789999999999999988777799999988653 2234556888999999832211 11
Q ss_pred eeeecc----CCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEE-EeccCCCceeEEEEEccCCeEEeeecC
Q 045370 152 SVLKGH----NGSITALAFSASH-LISASEDKTVCLWDVTRRVSIR-RFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 152 ~~~~~~----~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
....+| ...-.|++-..+| +++||.+|.|++||- .+...+ -+++...+|..+..+.+|+++++++..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 122222 2456777778888 999999999999998 444443 356777899999999999999966654
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00092 Score=59.25 Aligned_cols=138 Identities=17% Similarity=0.077 Sum_probs=80.0
Q ss_pred EEEeeCCCcEEEEEeCCCcE--EEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCe--EEEEeCCcccccccc
Q 045370 70 LLTISGGTTFFVSSSLDATC--KVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGR--IFVSPLKFLLLEDHF 144 (350)
Q Consensus 70 ~~~~~~~~~~l~s~~~d~~v--~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~ 144 (350)
-.|+|.+..++++...||.. .++|+.+++........+.-..=.|+|+|+.|+-.+ ..|. |.+++.....
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----- 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----- 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----
Confidence 36777665666777778764 556777666444222233333567899999877654 4454 5555554321
Q ss_pred ccccccceeeeccCCceEEEEecCCe--EEEEe-CCCc--EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 145 IVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
...+......-..-.|+|+| ++..+ .+|. |.+.|+.++..+..+. .......-.|.|+++.+...+..
T Consensus 318 ------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 318 ------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 12333333333377899999 43333 3454 7777777666544443 33444556788888877755443
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.017 Score=51.00 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=117.0
Q ss_pred eecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 2 VFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 2 ~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++++++. .+++...++.|.+.|... ........ -......+++.+.++...
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~---------------------------~~~~~~~~-vG~~P~~~~~~~~~~~vY 131 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTAT---------------------------NTVLGSIP-VGLGPVGLAVDPDGKYVY 131 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcc---------------------------cceeeEee-eccCCceEEECCCCCEEE
Confidence 5667776 444555568888888652 22222221 112566777877555555
Q ss_pred EEEe--CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccccccccccceeeecc
Q 045370 81 VSSS--LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 81 ~s~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
++-. .++++.+.|..+++.............++++|+|..++++. .++.|.+.|........ .. ......-
T Consensus 132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-----~~~~~~~ 205 (381)
T COG3391 132 VANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-----VGSLVGV 205 (381)
T ss_pred EEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-----ccccccc
Confidence 5555 47899999999999888855443348999999999777665 67999999976433221 00 0001122
Q ss_pred CCceEEEEecCCe---EEEEeCC--CcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecC
Q 045370 158 NGSITALAFSASH---LISASED--KTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 158 ~~~i~~~~~~~~~---l~s~~~d--g~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
......+.++|++ .++-..+ +.+...|..++..... +.........+.++|+|.++.+....
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 2344668888888 3332222 6899999999888776 22111156778999999988877554
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0013 Score=58.61 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=76.8
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.++|+|++++.+ .||...|+.... ... ...+.-...+|.+ .+. +
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~---------------------------~r~-----k~~G~g~~~vw~~-~n~-y 82 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALA---------------------------WRN-----KAFGSGLSFVWSS-RNR-Y 82 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTT---------------------------TEE-----EEEEE-SEEEE-T-SSE-E
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccC---------------------------Ccc-----cccCceeEEEEec-Ccc-E
Confidence 4689999998885 578888887431 111 1123344556766 333 5
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
|+-...+.|.++.--++.....+..+..+..+-. |..|...+ ++.|.+||..++.. ++.+.. .+
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~----------i~~i~v--~~ 146 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKL----------IRRIDV--SA 146 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--E----------EEEESS---E
T ss_pred EEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEEC-CCCEEEEEhhHcce----------eeEEec--CC
Confidence 6666677788853222222223333334444433 66666655 34788888875432 223322 23
Q ss_pred eEEEEecCCe-EEEEeCCCcEEEEECCCc--------------eEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370 161 ITALAFSASH-LISASEDKTVCLWDVTRR--------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 217 (350)
|..+.|++++ +++-..+..+.|++.... ..+.++ ...|.+.+|..+ -++.+..
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~ 214 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS 214 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC
Confidence 7888888887 333334556777765433 223222 356777778766 4444333
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.69 E-value=0.0053 Score=54.54 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=82.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
..++.++.+|.+..+|..+|+.+........ ..+.. .+..++.++.+|.+..+|..++........ . .+
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------~-~~ 325 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-------L-LH 325 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-------c-CC
Confidence 3466777899999999999988776543321 12222 467788888899999999987654321100 0 00
Q ss_pred CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeE-EEEEccCCeEEeeecCcccc
Q 045370 158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN-LVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~~~~~~~ 223 (350)
..........+.++.++.||.|+..|..+|+.+.+.......+.+ ..+ .++ .|+.++.++.++
T Consensus 326 -~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~ 389 (394)
T PRK11138 326 -RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVY 389 (394)
T ss_pred -CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEE
Confidence 111222233334888999999999999999998887643332322 222 234 455567666554
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.60 E-value=0.006 Score=58.82 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=111.2
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|-.+++.++.+..+|.|.+-|.++ ..+.....-...|.+.+|++ +...++
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et----------------------------~~~eivg~vd~GI~aaswS~-Dee~l~ 125 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPET----------------------------LELEIVGNVDNGISAASWSP-DEELLA 125 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccc----------------------------cceeeeeeccCceEEEeecC-CCcEEE
Confidence 3455667777777888888877662 22233334567888888866 677788
Q ss_pred EEeCCCcEEEEeCC----CCceE-----------E--------EEe----------------------cCCceeEEEEcC
Q 045370 82 SSSLDATCKVWDLG----SGILI-----------Q--------TQV----------------------YPQAVTAIAFHP 116 (350)
Q Consensus 82 s~~~d~~v~vwd~~----~~~~~-----------~--------~~~----------------------~~~~v~~~~~~~ 116 (350)
..+.++++.+..-. ..+.+ . .+. ..+.=+.|+|--
T Consensus 126 liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG 205 (1265)
T ss_pred EEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc
Confidence 77777777665431 11111 0 010 011223589999
Q ss_pred CCcEEEEE-----ccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE---eCCCcEEEEECC
Q 045370 117 GEQLLFAG-----SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA---SEDKTVCLWDVT 186 (350)
Q Consensus 117 ~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~---~~dg~v~iwd~~ 186 (350)
||.++++. ..-..|++||.. +..... . ....+-=.+++|-|.| +++- ..|+.|.+|.-+
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~----s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNST----S------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcc----c------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 99999883 333799999987 333221 0 1112233568999988 4432 346679999755
Q ss_pred C---ceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccc
Q 045370 187 R---RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKD 226 (350)
Q Consensus 187 ~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~ 226 (350)
. |...-.+......+..++|+.++.+|++...+ ...+.+|
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 3 33333344334459999999999999963332 3334455
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0014 Score=60.62 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=54.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
++|+|..-.|+.|-.-|.+.+|... ..........|..+|..+.|++ +|..+
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~---------------------------~~e~htv~~th~a~i~~l~wS~-~G~~l 116 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTN---------------------------TTETHTVVETHPAPIQGLDWSH-DGTVL 116 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecC---------------------------CceeeeeccCCCCCceeEEecC-CCCeE
Confidence 4678877778888888888888876 3444445577999999999966 77889
Q ss_pred EEEeCCCcEEEEeCC
Q 045370 81 VSSSLDATCKVWDLG 95 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~ 95 (350)
+|+..-|.|.+|.+.
T Consensus 117 ~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEcCCCceeEEEEee
Confidence 999999999999876
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00032 Score=62.53 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=71.1
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCce-EEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVT-GLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~ 79 (350)
+.|+|.-.++|++..+|.|.+..+. ...+..+.-|...++ +++|.+ +|++
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n----------------------------~qRlwtip~p~~~v~~sL~W~~-DGkl 76 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN----------------------------WQRLWTIPIPGENVTASLCWRP-DGKL 76 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec----------------------------cceeEeccCCCCccceeeeecC-CCCE
Confidence 4689999999999999999888766 334445555666776 999966 6899
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP 116 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~ 116 (350)
++.|-.||+|++.|+.++..+.. +.....|.++-|++
T Consensus 77 laVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 77 LAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999999999998887 55677888888864
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00049 Score=61.39 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=73.9
Q ss_pred cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE-EEEecCCe--EEEEeCCCcEE
Q 045370 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT-ALAFSASH--LISASEDKTVC 181 (350)
Q Consensus 105 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~--l~s~~~dg~v~ 181 (350)
.+..+..+.|+|.-..||.+..+|.|.+..+.. ..+-.+..|...++ +++|.|+| |+.|-.||+|+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 456788999999999999999999988877662 22225555666666 99999999 99999999999
Q ss_pred EEECCCceEEEEec-cCCCceeEEEEEc
Q 045370 182 LWDVTRRVSIRRFN-HKKGVVTNLVVIR 208 (350)
Q Consensus 182 iwd~~~~~~~~~~~-~~~~~v~~l~~~~ 208 (350)
+.|..++..+.... ....+|.++.|.+
T Consensus 88 L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 88 LHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEccCCCceeccccccccchheeeccc
Confidence 99999998887732 2456788888863
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.52 E-value=0.03 Score=47.02 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=88.6
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS 82 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 82 (350)
-...++.|+.|..+| +.+++... ....... .+...|..+...+.-+.+++.
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~--------------------------~~~~~~i--~~~~~I~ql~vl~~~~~llvL 53 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSD--------------------------PSKPTRI--LKLSSITQLSVLPELNLLLVL 53 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecC--------------------------CccceeE--eecceEEEEEEecccCEEEEE
Confidence 345678999999988 88888831 1111111 122338888887754433333
Q ss_pred EeCCCcEEEEeCCCCceEE---------------EEecCCceeEEE--EcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 83 SSLDATCKVWDLGSGILIQ---------------TQVYPQAVTAIA--FHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 83 ~~~d~~v~vwd~~~~~~~~---------------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
.|+.+.++++..-.... .+.....+...+ -...+...++......|.+|.........
T Consensus 54 --sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f--- 128 (275)
T PF00780_consen 54 --SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF--- 128 (275)
T ss_pred --cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc---
Confidence 36999999987644333 122233444444 11233344444445688888876421100
Q ss_pred cccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEE
Q 045370 146 VGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRR 193 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 193 (350)
....+.+. -...+.+++|.++.++.|..++ ..+.|+.++....-
T Consensus 129 --~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 129 --SKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred --cceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEE
Confidence 01222222 3478899999988777777554 77889997665443
No 340
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.49 E-value=0.039 Score=45.05 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=82.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
..+....-.++...+||..+.+.+..+..++.-..++. ++..|+..+....++++|..+........+. .-..
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-----~~g~ 172 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-----DNGR 172 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-----ETTE
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEE-----ECCE
Confidence 34555556788999999999999998888887788874 6778888877889999998876544322221 0011
Q ss_pred cCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc---------------CCCceeEEEEEccCCeEEeeec
Q 045370 157 HNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH---------------KKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 157 ~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
.-..++-+.+.... +|=.-....|...|..+|+++..+.. .......++++|....|..++.
T Consensus 173 pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 173 PVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred ECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 12345566666433 33333455677778888888776521 1346899999998776655543
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.45 E-value=3.2e-05 Score=68.74 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=74.2
Q ss_pred CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEe-CCcccccc
Q 045370 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSP-LKFLLLED 142 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~ 142 (350)
....+++|. .+..++.+|...+.+.++|++........-....+..+.++| .++++++-. ||.|-+|| .++.+
T Consensus 155 ~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie--- 229 (783)
T KOG1008|consen 155 DGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE--- 229 (783)
T ss_pred cCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc---
Confidence 444577886 577888999999999999998433222222334567788888 777777666 99999999 33221
Q ss_pred ccccccccceeee----ccCCceEEEEecCCe---EEEEeC-CCcEEEEECC
Q 045370 143 HFIVGEDQHSVLK----GHNGSITALAFSASH---LISASE-DKTVCLWDVT 186 (350)
Q Consensus 143 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~---l~s~~~-dg~v~iwd~~ 186 (350)
.++..+. .....+..++|+|.. +++... .++|+++|+.
T Consensus 230 ------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 230 ------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1111111 122358899999965 666665 4789999985
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.025 Score=50.30 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=75.5
Q ss_pred ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec---CCce-----eEEEEcCCCcEEEEEc
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY---PQAV-----TAIAFHPGEQLLFAGS 125 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~v-----~~~~~~~~~~~l~~~~ 125 (350)
+..+....-..+.+.++.|.. + ..|+....||.++++|+.... ...+.. ...| ....+..+|-.++ .
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t 144 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--T 144 (410)
T ss_pred CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEE--C
Confidence 344444433338999999965 3 456777899999999987333 212211 1122 2223333443333 3
Q ss_pred cCCeEEEEeCCcccccccccccccccee--eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370 126 IDGRIFVSPLKFLLLEDHFIVGEDQHSV--LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV 201 (350)
Q Consensus 126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 201 (350)
.++.+++.+--........ ....+... ...+.....-..++.+. .+....++.+.+.+-..... +. ..+++
T Consensus 145 ~~~~~~~v~n~~~~~~~~~-~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i 219 (410)
T PF04841_consen 145 GNNRFYVVNNIDEPVKLRR-LPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPI 219 (410)
T ss_pred CCCeEEEEeCccccchhhc-cccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCe
Confidence 4555544432211100000 00000000 00111100001222222 33333444555443322211 22 24689
Q ss_pred eEEEEEccCCeEEeeecCcccccc
Q 045370 202 TNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 202 ~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
..++.||+++++|.-..++.+|-.
T Consensus 220 ~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 220 IKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred EEEEECCCCCEEEEEECCCCEEEE
Confidence 999999999999977777665544
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.43 E-value=0.012 Score=52.27 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=68.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEE--EEcC--CCcEEEEEccCCeEEEEeCCccccccccccccccc-e
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAI--AFHP--GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-S 152 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~ 152 (350)
..++.+..++.|.-+|..+|+.+.......+...+ .-+| .+..++.++.+|.+..+|..+++............ .
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 34666778899999999999988876543221110 0112 23456777889999999988776543221110000 0
Q ss_pred eeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370 153 VLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
.+..-...........+.++.++.+|.++-+|..+|+.+....
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 283 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE 283 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence 0000000001111222337777889999999999998887654
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0054 Score=54.47 Aligned_cols=149 Identities=18% Similarity=0.100 Sum_probs=91.0
Q ss_pred eeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCe--EEE
Q 045370 59 YSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGR--IFV 132 (350)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i 132 (350)
.+..-...+..-.|.+....+....-.. ..+.++++.++.........+.-..-+|+|||+.|+. ...||. |++
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 3334445555566766444433332222 3589999999988777777777778899999987664 455664 555
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCc--EEEEECCCceEEEEeccCCCceeEEEEE
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 207 (350)
+|+.... ...+....+.-+.-.|+|+| +++.+..|. |.++|...+.. ..+....+.-..-.|+
T Consensus 267 ~dl~~~~-----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~S 334 (425)
T COG0823 267 MDLDGKN-----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWS 334 (425)
T ss_pred EcCCCCc-----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCC
Confidence 5666432 12233333334466799999 445555554 66667766554 3333223332367899
Q ss_pred ccCCeEEeeecC
Q 045370 208 RQSSLLSEVSNC 219 (350)
Q Consensus 208 ~~~~~l~~~~~~ 219 (350)
|+|++++..+..
T Consensus 335 pdG~~i~~~~~~ 346 (425)
T COG0823 335 PDGDKIVFESSS 346 (425)
T ss_pred CCCCEEEEEecc
Confidence 999998877743
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.37 E-value=0.0069 Score=57.30 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=81.0
Q ss_pred cccceeeeccccCC-ceEEEEeeC----CCcEEEEEeCCCcEEEEeCCCCc--eEEE----EecCCceeEEEEcCCCcEE
Q 045370 53 LRSLLHYSLEHKSS-VTGLLTISG----GTTFFVSSSLDATCKVWDLGSGI--LIQT----QVYPQAVTAIAFHPGEQLL 121 (350)
Q Consensus 53 ~~~~~~~~~~h~~~-v~~~~~~~~----~~~~l~s~~~d~~v~vwd~~~~~--~~~~----~~~~~~v~~~~~~~~~~~l 121 (350)
.+..+..+..|... |..++-... .....+.|-.+..+..||++-.. ++.. +.......|++-+.+ .+|
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~i 591 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYI 591 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceE
Confidence 35666666666544 666543211 12345678888999999988632 3322 234456777776644 588
Q ss_pred EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEEC
Q 045370 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDV 185 (350)
Q Consensus 122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~ 185 (350)
++|+.+|.|++||-- + ......+++-..+|..|..+.+| .+.+..+..|.+++.
T Consensus 592 avgs~~G~IRLyd~~-g---------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRL-G---------KRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEEeCCCcEEeeccc-c---------hhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 999999999999932 1 12223566778999999999999 444455778888885
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.36 E-value=0.03 Score=48.28 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=70.5
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCC--ceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 137 (350)
....++|.+++.. ++. ++.+ .++.|.+|++...+ ....-.+.. .+.++.. .++++++|+....+.++..+.
T Consensus 85 ~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence 4557899999876 344 4443 35889999999888 555543333 4555554 467999999888888875442
Q ss_pred ccccccccccccccee--eeccCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370 138 LLLEDHFIVGEDQHSV--LKGHNGSITALAFSASH--LISASEDKTVCLWDVT 186 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~ 186 (350)
. ...+.. -......++++.+-+++ ++.+..+|.+.++...
T Consensus 159 ~---------~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 E---------NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp T---------TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred c---------CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 1 000111 12234568888887443 9999999999999775
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.03 Score=52.29 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=84.9
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCC---C-C-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLG---S-G-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~---~-~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 138 (350)
..++.+++.+. +-..+|.|-.+|.|..+.=+ . | +.........+|+.+.+..++..++-+..-..|.+|.+...
T Consensus 125 ~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 125 PSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 45566666644 56789999999999887522 1 1 11222345679999999988886333333567889988731
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCC
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKG 199 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~ 199 (350)
......+..|+..++|-.+++.. +++++ +..|.+||.....+...+. +|..
T Consensus 204 ---------~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 204 ---------TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred ---------CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 12233467888999999999876 66555 4479999998877777776 5543
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.062 Score=47.45 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=100.0
Q ss_pred CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCCcccccc
Q 045370 66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFLLLED 142 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 142 (350)
....++.++.....+++...++.|.+.|..+...............++++|+++.++++.. ++.+.+.|-.+.....
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3445666666666777777789999999988888888776668889999999988877765 6788888877544332
Q ss_pred ccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEE-E----eccCCCceeEEEEEccCCeEE
Q 045370 143 HFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIR-R----FNHKKGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~-~----~~~~~~~v~~l~~~~~~~~l~ 214 (350)
....-..+ ..++++|++ +++-..++.|.+.|..+..... . +.. ......+.++|+|..+.
T Consensus 155 ----------~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 155 ----------TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVY 222 (381)
T ss_pred ----------EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEE
Confidence 21111123 889999999 4444578999999987766553 1 221 23346788999999776
Q ss_pred eeecC
Q 045370 215 EVSNC 219 (350)
Q Consensus 215 ~~~~~ 219 (350)
+....
T Consensus 223 V~~~~ 227 (381)
T COG3391 223 VANDG 227 (381)
T ss_pred EEecc
Confidence 55544
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.096 Score=44.46 Aligned_cols=125 Identities=16% Similarity=0.099 Sum_probs=78.3
Q ss_pred EEEeCC-CCceEEEEe-cCCceeEEEEcCCCcEEEEEccC-CeEEEEeCCccccccccccccccceeeeccCCceEEEEe
Q 045370 90 KVWDLG-SGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID-GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166 (350)
Q Consensus 90 ~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (350)
.+|.+. .+....... +-...+.++|+||++.++.+... +.|+-|++...... .........+....+..-.++.
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~---~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP---IGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc---cCCcceEEEccCCCCCCCceEE
Confidence 345444 455444433 24567789999999888877654 88888887631100 0011111222234566667777
Q ss_pred cCCe-EEEEe-CCC-cEEEEECCCceEEEEeccCCCceeEEEEE-ccCCeEEeeec
Q 045370 167 SASH-LISAS-EDK-TVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSLLSEVSN 218 (350)
Q Consensus 167 ~~~~-l~s~~-~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~ 218 (350)
..+| +.++. .+| .|..|+.. ++.+..+..+...+++++|- |+.+.|+.++.
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7777 65344 333 89999998 99998888666788888886 44555554444
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.00051 Score=63.43 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=78.2
Q ss_pred EEeeCCCcEEEEEe----CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370 71 LTISGGTTFFVSSS----LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV 146 (350)
Q Consensus 71 ~~~~~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 146 (350)
.|+| ...+++.++ ..|+|-||- ++|++-.....+-.++++||||..-.|+.|-.-|.+.+|.....+
T Consensus 22 SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e------- 92 (1416)
T KOG3617|consen 22 SWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE------- 92 (1416)
T ss_pred ccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-------
Confidence 3444 444555543 357787774 556655555555667889999998899999989999999877432
Q ss_pred ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370 147 GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT 186 (350)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~ 186 (350)
.......|+.+|..+.|+|+| ++++..-|.|.+|...
T Consensus 93 ---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 ---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 223456799999999999999 9999999999999765
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.24 E-value=0.00068 Score=36.85 Aligned_cols=33 Identities=55% Similarity=0.898 Sum_probs=28.7
Q ss_pred eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370 152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWD 184 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd 184 (350)
..+..|...|.++.|++.. +++++.|+.+++||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3556788899999999876 99999999999996
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.24 E-value=0.0016 Score=35.29 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=28.2
Q ss_pred ecCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP 134 (350)
Q Consensus 104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 134 (350)
.|...+.++.|++.+..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3677899999999999999999999999996
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.23 E-value=0.016 Score=56.03 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=96.6
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH 143 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 143 (350)
.+.|.++.|.. +..-++.+..+|.|.+-|..+......-.....|.+++|+||+..++..+..+++.+-+-.-......
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 36889998876 45567778889999999988876665556778999999999999999999888877644311000000
Q ss_pred cc-------------cccccceeeec---------------------cCCceEEEEecCCe--EEEE----eCC-CcEEE
Q 045370 144 FI-------------VGEDQHSVLKG---------------------HNGSITALAFSASH--LISA----SED-KTVCL 182 (350)
Q Consensus 144 ~~-------------~~~~~~~~~~~---------------------~~~~i~~~~~~~~~--l~s~----~~d-g~v~i 182 (350)
.. .-+.....+.+ -...=+.+.|-.+| +++. -.+ ..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00 00000001111 11223458899888 4431 234 78999
Q ss_pred EECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370 183 WDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 183 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 217 (350)
||-. |.+-..-....+.=.+++|-|.|.++++..
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeee
Confidence 9987 443333233344557789999999988654
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.23 E-value=0.011 Score=52.86 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=74.5
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEE-eCCccc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS-PLKFLL 139 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~ 139 (350)
......+..+.++| ++++++. +.||.-.++.....+... .+.....+|.+.+ .+++-...+.|.++ ++...
T Consensus 29 g~~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~- 100 (443)
T PF04053_consen 29 GSCEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE- 100 (443)
T ss_dssp EE-SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--
T ss_pred CCCCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccc-
Confidence 34445678888866 6676666 457878888744333322 2455678899844 46666668889996 33211
Q ss_pred cccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
....+.. +..+..+-. | ++....++.|.+||..+++.+.++... +|..+.|+++|.+++..+.
T Consensus 101 ----------~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 101 ----------VVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ----------TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred ----------cceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence 1001111 112333322 5 333444558999999999999999843 4899999999999998877
Q ss_pred Cccc
Q 045370 219 CQRK 222 (350)
Q Consensus 219 ~~~~ 222 (350)
+...
T Consensus 165 ~~i~ 168 (443)
T PF04053_consen 165 DSIY 168 (443)
T ss_dssp -SEE
T ss_pred CeEE
Confidence 6433
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.20 E-value=0.09 Score=43.04 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=90.1
Q ss_pred eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
.+.+-...+.+++|.+.++.++++....+.|...+.. |+.+..+.. .+....|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3455666799999998778888888888888888864 788887653 3568899998888777777678999999885
Q ss_pred ccccccc-cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC---ceEEEEe--------ccCCCcee
Q 045370 137 FLLLEDH-FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR---RVSIRRF--------NHKKGVVT 202 (350)
Q Consensus 137 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~---~~~~~~~--------~~~~~~v~ 202 (350)
....... .....-.......+...+-.++|+|.+ |+.+-+..-..+|.+.. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 3221100 000000000112345568899999976 77777776667776653 2111111 12344688
Q ss_pred EEEEEccCCeEEeeecCc
Q 045370 203 NLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 203 ~l~~~~~~~~l~~~~~~~ 220 (350)
+++++|....|..-|...
T Consensus 175 ~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDES 192 (248)
T ss_dssp EEEEETTTTEEEEEETTT
T ss_pred ceEEcCCCCeEEEEECCC
Confidence 999999865444445443
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.19 E-value=0.061 Score=49.28 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=77.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE------------------ccCCeEEEEeCCcccc
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG------------------SIDGRIFVSPLKFLLL 140 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~ 140 (350)
.++.++.+|.+...|..+|+.+....... ..+..+| ..++.+ ..+|.+.-.|+.+++.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 57788899999999999999888754321 1233344 333332 2357788888887765
Q ss_pred ccccccccccce-eeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCcee-EEEEEccCC-eEEeee
Q 045370 141 EDHFIVGEDQHS-VLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVT-NLVVIRQSS-LLSEVS 217 (350)
Q Consensus 141 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~~~~~-~l~~~~ 217 (350)
............ .+... .....+....+.++.++.||.|+.+|..+|+.+.+++....... -+.+..+++ ++++.+
T Consensus 379 ~W~~~~~~~~~~~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 379 VWEKREGTIRDSWNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred eeEeeCCccccccccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEe
Confidence 433211100000 00000 00112333444488889999999999999999998864222211 133445665 444333
Q ss_pred cCcc
Q 045370 218 NCQR 221 (350)
Q Consensus 218 ~~~~ 221 (350)
...+
T Consensus 458 g~~~ 461 (488)
T cd00216 458 GGGG 461 (488)
T ss_pred cCCc
Confidence 3333
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.09 E-value=0.16 Score=43.82 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=85.2
Q ss_pred CcEEEEEeC----------CCcEEEEeCCCC-----c--eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 77 TTFFVSSSL----------DATCKVWDLGSG-----I--LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 77 ~~~l~s~~~----------d~~v~vwd~~~~-----~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
..+++.|.. .|.|.++++... + .+.....+++|++++-- ++. |+++. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 466776643 288999999984 2 23335678899999876 444 44443 5899999998544
Q ss_pred -cccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCC-ceEEEEec--cCCCceeEEEEEccCCeEEe
Q 045370 140 -LEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTR-RVSIRRFN--HKKGVVTNLVVIRQSSLLSE 215 (350)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~~ 215 (350)
... .........+.++....+.++.|.....+.++.... ...+..+. .....++++.|.+++..+++
T Consensus 119 ~l~~---------~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 119 TLLK---------KAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp SEEE---------EEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred cchh---------hheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 111 122223347888888888888888878888774432 23232332 23456889999977777776
Q ss_pred eecCcccccc
Q 045370 216 VSNCQRKLKK 225 (350)
Q Consensus 216 ~~~~~~~~~~ 225 (350)
+..++.++-.
T Consensus 190 ~D~~gnl~~l 199 (321)
T PF03178_consen 190 GDKDGNLFVL 199 (321)
T ss_dssp EETTSEEEEE
T ss_pred EcCCCeEEEE
Confidence 7777655543
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.96 E-value=0.091 Score=42.34 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeE-EEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTA-IAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
+++++.|+..|.+.+.+.++|.....+...+.|.+ ...++++..|+.|+.|+..+..|.++..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 46799999999999999999987777654444443 3456799999999999999999998543
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0044 Score=59.02 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~ 185 (350)
++..++..-.+..++.|+..|.+-..|....- .+...-..-.++|++++|+.+| ++.|-.+|.|.+||+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL---------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL---------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhccc---------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence 33444443456788889988999888877421 1111112335799999999999 778889999999999
Q ss_pred CCceEEEEeccCCCceeEEEE---EccCCeEEeeecCccccccc
Q 045370 186 TRRVSIRRFNHKKGVVTNLVV---IRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~l~~---~~~~~~l~~~~~~~~~~~~~ 226 (350)
..+++++.+..|..+.+++-+ ..++..++++...|..|...
T Consensus 160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEE
Confidence 999999988877666665544 44556677676666565543
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.085 Score=44.77 Aligned_cols=143 Identities=8% Similarity=-0.059 Sum_probs=85.0
Q ss_pred EEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370 71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ 150 (350)
Q Consensus 71 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 150 (350)
.|.+..+.++.+--..+.|.-|+..++... .+..++.+.++..-..+..|+++.. -+.+++...+........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~---- 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE---- 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc----
Confidence 466655566777777888999998866533 3555555566555555556655543 345555543322110000
Q ss_pred ceeeec-cCCceEEEEecCCe-EEEEeCC------------CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370 151 HSVLKG-HNGSITALAFSASH-LISASED------------KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 151 ~~~~~~-~~~~i~~~~~~~~~-l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
...+ .....+.+...|+| +..+... |.|+-+|. .+..+..+..+-..-..|+||||++.|+.+
T Consensus 104 --~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 104 --PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred --ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1111 12456778888888 6666544 33555554 466666666556667899999999888877
Q ss_pred ecCcccc
Q 045370 217 SNCQRKL 223 (350)
Q Consensus 217 ~~~~~~~ 223 (350)
....+.+
T Consensus 181 DT~~~~i 187 (307)
T COG3386 181 DTPANRI 187 (307)
T ss_pred eCCCCeE
Confidence 7664333
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.0058 Score=47.98 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=62.8
Q ss_pred CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370 7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD 86 (350)
Q Consensus 7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 86 (350)
+.-+++|+.+|.|.+|++... +........-...|.+....-.++.+.++++.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~--------------------------g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE--------------------------GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQD 123 (238)
T ss_pred CceEEeecccceEEEecCCcc--------------------------chHHHhhhcccccceeccccccccceeEEeccC
Confidence 346788889999999987621 111111122233444433222334588999999
Q ss_pred CcEEEEeCCCCceEEEEe-cC-CceeEEEEcCCCcEEEEE--ccCCeEEEEeCCc
Q 045370 87 ATCKVWDLGSGILIQTQV-YP-QAVTAIAFHPGEQLLFAG--SIDGRIFVSPLKF 137 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 137 (350)
|.|+.|++.-++.+.... |. .++........+..+..+ |.|..++.|++..
T Consensus 124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 999999999887776654 33 344444444445555555 5566666666653
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.80 E-value=0.093 Score=48.94 Aligned_cols=113 Identities=9% Similarity=0.130 Sum_probs=60.7
Q ss_pred cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeC---CccccccccccccccceeeeccCCceEEE
Q 045370 88 TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL---KFLLLEDHFIVGEDQHSVLKGHNGSITAL 164 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (350)
.+.+.++..+.... .....|..+.|+|||..++... +|.|++--+ ..+. ..+ ........+-...+..+
T Consensus 431 ql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~----~~l-~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 431 QLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ----YAL-TNPREVGPGLGDTAVSL 502 (591)
T ss_pred eEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc----eee-cccEEeecccCCccccc
Confidence 34333554443322 3456799999999999888766 577777322 2221 000 01111112233446889
Q ss_pred EecCCe-EEEEeCCCcEEEEECCC-ceEEEEecc--CCCceeEEEEEc
Q 045370 165 AFSASH-LISASEDKTVCLWDVTR-RVSIRRFNH--KKGVVTNLVVIR 208 (350)
Q Consensus 165 ~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~ 208 (350)
.|.+++ |+++..++...+|.+.- |.....+.. ...++.+++-++
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 999998 77766655555554332 222222222 245677777766
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.78 E-value=0.055 Score=47.31 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=87.5
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370 4 SDDGFLLISGS---------DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS 74 (350)
Q Consensus 4 s~dg~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 74 (350)
|||+++++... ..+.+.|||+++ .....+......+....|+|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~----------------------------~~~~~l~~~~~~~~~~~~sP 52 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET----------------------------GEITPLTPPPPKLQDAKWSP 52 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT----------------------------TEEEESS-EETTBSEEEE-S
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC----------------------------CceEECcCCccccccceeec
Confidence 78999888743 246777888872 22222222266777888866
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEec------------------CCceeEEEEcCCCcEEEEEccC-CeEEEEeC
Q 045370 75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVY------------------PQAVTAIAFHPGEQLLFAGSID-GRIFVSPL 135 (350)
Q Consensus 75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~ 135 (350)
+++.++-.. ++.|.+++..++...+.... -+.-..+-|+||+++|+....| ..|..+.+
T Consensus 53 -~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 53 -DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp -SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred -CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 577766664 68899999887744432111 1234678899999998876543 55555544
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCC--cEEEEECCCceEEE--Ee---ccCCCceeEEEEEc
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDK--TVCLWDVTRRVSIR--RF---NHKKGVVTNLVVIR 208 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~--~~---~~~~~~v~~l~~~~ 208 (350)
........ .-..+..+.+-.-| ..+- .+.|+|+.+++... .. ......+..+.|.+
T Consensus 131 ~~~~~~~~-------------~yp~~~~~~YPk~G----~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~ 193 (353)
T PF00930_consen 131 PDYSPPDS-------------QYPEVESIRYPKAG----DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP 193 (353)
T ss_dssp EEESSSTE-------------SS-EEEEEE--BTT----S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE
T ss_pred eccCCccc-------------cCCcccccccCCCC----CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC
Confidence 32110000 00123333332111 1111 46678888776432 11 22345788999999
Q ss_pred cCC
Q 045370 209 QSS 211 (350)
Q Consensus 209 ~~~ 211 (350)
++.
T Consensus 194 d~~ 196 (353)
T PF00930_consen 194 DGK 196 (353)
T ss_dssp TTE
T ss_pred CCc
Confidence 988
No 364
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.72 E-value=0.027 Score=51.65 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=60.6
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce------------EEEEecCCceeEEEEcCCCcEEEEE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL------------IQTQVYPQAVTAIAFHPGEQLLFAG 124 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~ 124 (350)
+..+..-......+.++|.+...++++..+.+|.|.|+.+.+. .............+|+++|+.+.+.
T Consensus 313 v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 313 LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeE
Confidence 3334445667788888775555566777799999999987542 3334445566788999999988888
Q ss_pred ccCCeEEEEeCCc
Q 045370 125 SIDGRIFVSPLKF 137 (350)
Q Consensus 125 ~~dg~i~i~d~~~ 137 (350)
..|..|..|++..
T Consensus 393 f~dsqv~kwn~~~ 405 (635)
T PRK02888 393 FLDSQIVKWNIEA 405 (635)
T ss_pred eecceeEEEehHH
Confidence 8999999999886
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.71 E-value=0.37 Score=42.18 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=100.7
Q ss_pred CeecCCCCEEEEEeC-CCcEEEEeCcccccccc------c---cccccccccccEEEeecccccc-ceeee---ccccCC
Q 045370 1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTS------E---LMHHSDQLDQRLIEMELRSLRS-LLHYS---LEHKSS 66 (350)
Q Consensus 1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~h~~~ 66 (350)
+.|||||++||.... +..|..+.+........ . ...........+...+...... .+... ..-...
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 369999999987765 45666665543211111 0 0011111222333333322221 11111 234566
Q ss_pred ceEEEEeeCCCcEEE-EEeCCC---cEEEEeCCCCceEEEEe--cCCc---eeEEEEc-CCCc-EEEEEccCCeEEEEeC
Q 045370 67 VTGLLTISGGTTFFV-SSSLDA---TCKVWDLGSGILIQTQV--YPQA---VTAIAFH-PGEQ-LLFAGSIDGRIFVSPL 135 (350)
Q Consensus 67 v~~~~~~~~~~~~l~-s~~~d~---~v~vwd~~~~~~~~~~~--~~~~---v~~~~~~-~~~~-~l~~~~~dg~i~i~d~ 135 (350)
+..+.|.+.+..+++ ....+. .+.+.|..++....... .... -....|. +++. ++.....+|.-++|-+
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 788889775442333 333333 36677887766544432 2222 2355554 5544 5555556775555444
Q ss_pred CccccccccccccccceeeeccCCceEE-EEecCCe---EEEEeCC----CcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITA-LAFSASH---LISASED----KTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 207 (350)
... ......++...-.|+. +.+++++ ++++..+ ..|+.-++..+..+..+....+.-..+.||
T Consensus 266 ~~~---------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 266 DLD---------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp ETT---------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred ccc---------ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 321 1112244444555655 5677775 5566553 356666777334445555333333689999
Q ss_pred ccCCeEEeeec
Q 045370 208 RQSSLLSEVSN 218 (350)
Q Consensus 208 ~~~~~l~~~~~ 218 (350)
|++++++..+.
T Consensus 337 pdg~y~v~~~s 347 (353)
T PF00930_consen 337 PDGKYYVDTYS 347 (353)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEc
Confidence 99998886554
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.69 E-value=0.008 Score=34.82 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=29.5
Q ss_pred ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
.....|.+++|+|...+|+.++.+|.|.+|.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 345679999999999999999999999999884
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.0072 Score=57.63 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=65.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCce--EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370 77 TTFFVSSSLDATCKVWDLGSGIL--IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL 154 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 154 (350)
+.+++.|+..|.|...|+...-. .+.....++|++++|+.+|..++.|-.+|.|.+||....+ ..+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----------~l~~i 168 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----------ILKVI 168 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----------ceeee
Confidence 35688899999999999876421 2223456799999999999999999999999999998543 33344
Q ss_pred eccCCceEEEEe----cCCe-EEEEeCCCc
Q 045370 155 KGHNGSITALAF----SASH-LISASEDKT 179 (350)
Q Consensus 155 ~~~~~~i~~~~~----~~~~-l~s~~~dg~ 179 (350)
..|..+.+.+-+ +.+. ++++...|.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 444444444332 2333 667666665
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.07 Score=47.33 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=77.7
Q ss_pred cccceeeeccccCCceEEEEeeCCC------cEEEEEeCCCcEEEEeCCCCce--EE-E----EecCCceeEEEEcCCCc
Q 045370 53 LRSLLHYSLEHKSSVTGLLTISGGT------TFFVSSSLDATCKVWDLGSGIL--IQ-T----QVYPQAVTAIAFHPGEQ 119 (350)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~------~~l~s~~~d~~v~vwd~~~~~~--~~-~----~~~~~~v~~~~~~~~~~ 119 (350)
.+..+..+.-|.+ |.-+.+.|... ..-+.|-.|..|.-||++-... +. . +.......|.+-.. ..
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG 442 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SG 442 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-Cc
Confidence 3555666665655 44444433211 1234577889999999884322 11 1 22334455655543 45
Q ss_pred EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT 186 (350)
Q Consensus 120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~ 186 (350)
+|++|+.+|.|++||-- + ......+++-..+|..+..+.+| .+.|..+..+.+-|+.
T Consensus 443 ~IvvgS~~GdIRLYdri-~---------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDRI-G---------RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eEEEeecCCcEEeehhh-h---------hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 89999999999999963 2 22222667788999999999999 5556667788888764
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.53 E-value=0.053 Score=47.79 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=73.6
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc-c-----c---------------------------ccccccceee
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED-H-----F---------------------------IVGEDQHSVL 154 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~-----~---------------------------~~~~~~~~~~ 154 (350)
.|+.+.|.++...|++|...|.|.+|......... . . ...-.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999999999999999999998765433221 0 0 0001122234
Q ss_pred eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec--c------CCCceeEEEEEc-----cC---CeEEeee
Q 045370 155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN--H------KKGVVTNLVVIR-----QS---SLLSEVS 217 (350)
Q Consensus 155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~l~~~~-----~~---~~l~~~~ 217 (350)
....++|++++.+.-| ++.|.++|.+.|.|+|....+..-. . ....++++.|+. |+ -.|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 4557899999999888 8889999999999999988887632 1 233688888873 22 3566666
Q ss_pred cCcccccc
Q 045370 218 NCQRKLKK 225 (350)
Q Consensus 218 ~~~~~~~~ 225 (350)
+.+.++.+
T Consensus 163 n~G~v~~f 170 (395)
T PF08596_consen 163 NSGNVLTF 170 (395)
T ss_dssp TTSEEEEE
T ss_pred CCCCEEEE
Confidence 66655443
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.50 E-value=0.33 Score=44.50 Aligned_cols=111 Identities=13% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCCcEEEEeCCCCceEEEEecCCc---------------------e-eEEEEcCCCcEEEEEccCC--------------
Q 045370 85 LDATCKVWDLGSGILIQTQVYPQA---------------------V-TAIAFHPGEQLLFAGSIDG-------------- 128 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~~~~~~---------------------v-~~~~~~~~~~~l~~~~~dg-------------- 128 (350)
.++.|..+|..+|+.+........ + ...++++.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 468899999999998877543210 0 1234455567788887665
Q ss_pred ----eEEEEeCCccccccccccccccceeeeccCCce-EEEE-ecCC--e-EEEEeCCCcEEEEECCCceEEEEec
Q 045370 129 ----RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI-TALA-FSAS--H-LISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 129 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~-~~~~--~-l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
.|.-+|..+++..............+.....++ ..+. .... . ++.++.+|.++..|.++|+.+....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 688889888776543221111000011111111 1111 1112 1 7778889999999999999988764
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.15 Score=41.75 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=87.7
Q ss_pred eecCCCCEEEEEeCC-----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370 2 VFSDDGFLLISGSDD-----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG 76 (350)
Q Consensus 2 ~~s~dg~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 76 (350)
.|||||.+|+..-.| |.|-|||.... ...+..+..|.-....+.+.+ +
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------fqrvgE~~t~GiGpHev~lm~-D 172 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------FQRVGEFSTHGIGPHEVTLMA-D 172 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------cceecccccCCcCcceeEEec-C
Confidence 589999998765433 78999998731 233444556666666777755 5
Q ss_pred CcEEEEEeC------------------CCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEE--
Q 045370 77 TTFFVSSSL------------------DATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIF-- 131 (350)
Q Consensus 77 ~~~l~s~~~------------------d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~-- 131 (350)
+..++.+.- .-++.+.|..+|.++.... +.-.+..++..++|+..+.+-..|--.
T Consensus 173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 555544321 1123445555565554432 234577788887777665543322110
Q ss_pred ---EEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec
Q 045370 132 ---VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 132 ---i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
+=-...++.........+ ........|-+++.+.+. .+|+-..+..-+||..+|..+..-.
T Consensus 253 ppLvg~~~~g~~l~~~~~pee---~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEE---QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred CcceeeccCCCcCcccCCCHH---HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 000000000000000000 111223567778877543 4444456678899999999876543
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.35 E-value=0.011 Score=34.26 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=28.0
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEE
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSI 191 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~ 191 (350)
...|.++.|+|.. +|.++.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3569999999998 999999999999998 55543
No 373
>PHA02713 hypothetical protein; Provisional
Probab=96.31 E-value=0.24 Score=46.16 Aligned_cols=133 Identities=5% Similarity=0.029 Sum_probs=66.2
Q ss_pred CCcEEEEEeCCC-----cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCC--------------------
Q 045370 76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDG-------------------- 128 (350)
Q Consensus 76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-------------------- 128 (350)
++.+.+.||.++ ++..||..+++....-. .+..-.+++. -++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-ECCEEEEEeCCCccccccccccccccccccccc
Confidence 567778888764 48889998876544322 2211112222 2577777776542
Q ss_pred ---eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCC------CcEEEEECCC---ceEEEEec
Q 045370 129 ---RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED------KTVCLWDVTR---RVSIRRFN 195 (350)
Q Consensus 129 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d------g~v~iwd~~~---~~~~~~~~ 195 (350)
.+..||..+....... .+...... .+++...+. ++.|+.+ ..+..||..+ ...+..+.
T Consensus 430 ~~~~ve~YDP~td~W~~v~--------~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLP--------NFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccceEEEECCCCCeEeecC--------CCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 4666776654322110 11111111 123333344 5556543 2467899876 34444444
Q ss_pred cCCCceeEEEEEccCCeEEeeecCc
Q 045370 196 HKKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 196 ~~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
........+++ ++++.+.|+.++
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecc
Confidence 32222222222 567667676554
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.20 E-value=0.56 Score=38.81 Aligned_cols=148 Identities=16% Similarity=0.036 Sum_probs=81.3
Q ss_pred CceEEEEeeCCCcEEEEEe-CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEe-CCccccccc
Q 045370 66 SVTGLLTISGGTTFFVSSS-LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP-LKFLLLEDH 143 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~ 143 (350)
.+.+.+.++. +..++... .++.-.+|-...+...........+..-.|++++...++...+....++. ...+.....
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 5677777664 44444333 33333344333333333322344778889999977766666666666663 222111100
Q ss_pred cccccccceeeeccCCceEEEEecCCe--EE---EEeCCCcEEEEECC---Cc------eEEEEeccCCCceeEEEEEcc
Q 045370 144 FIVGEDQHSVLKGHNGSITALAFSASH--LI---SASEDKTVCLWDVT---RR------VSIRRFNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~---s~~~dg~v~iwd~~---~~------~~~~~~~~~~~~v~~l~~~~~ 209 (350)
.+ ....-...|+.+.++|+| ++ ....++.|.+--+. .+ ..+.........+..+.|.++
T Consensus 104 ------~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 104 ------EV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred ------Ee-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 00 111111289999999999 22 23345777776543 22 111122223468899999999
Q ss_pred CCeEEeeecCcc
Q 045370 210 SSLLSEVSNCQR 221 (350)
Q Consensus 210 ~~~l~~~~~~~~ 221 (350)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998887766543
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.20 E-value=0.67 Score=39.50 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEE--Ee-----------cCCceeEEEEcCCCcEEEEEcc--------CC--eEEE
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQT--QV-----------YPQAVTAIAFHPGEQLLFAGSI--------DG--RIFV 132 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~~--------dg--~i~i 132 (350)
.+..++--+.+|.|+--|+........ +. .++.-.-+++++..+.|++.-. |+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 334455567889888888876653332 21 1234455788876655554321 22 4666
Q ss_pred EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEE-eCCCcEEEEECCCceEEEEecc
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISA-SEDKTVCLWDVTRRVSIRRFNH 196 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~-~~dg~v~iwd~~~~~~~~~~~~ 196 (350)
+|+.+ .+.+..+.. ..++.+|..+.+. |++. ..++.|.+||..+|+.+.++..
T Consensus 274 ~D~~t----------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKT----------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT----------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCC----------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 77764 333444442 1357789998876 5444 4578999999999999999873
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.16 E-value=0.27 Score=45.91 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCC-----cEEEEeCCCCceEEEEecCCceeEEEEc-CCCcEEEEEccCC------eEEEEeCCccccccc
Q 045370 76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQVYPQAVTAIAFH-PGEQLLFAGSIDG------RIFVSPLKFLLLEDH 143 (350)
Q Consensus 76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~i~d~~~~~~~~~ 143 (350)
++.+.+.||.|| +|..||..+.+....-+........... -+|...++|+.++ .+..||..+......
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 678889999987 4788888877654443222222222222 2677777777554 567777776543321
Q ss_pred cccccccceeeeccCCceEEEEecCCe-EEEEeCCC-----cEEEEECCCceE
Q 045370 144 FIVGEDQHSVLKGHNGSITALAFSASH-LISASEDK-----TVCLWDVTRRVS 190 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg-----~v~iwd~~~~~~ 190 (350)
. .+...... ..++.-.+. ++.|+.|+ +|..||..+.+-
T Consensus 460 ~--------~M~~~R~~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 460 A--------PMNTRRSG-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred C--------Cccccccc-ceEEEECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 1 11111111 124444445 77888776 377788877543
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.10 E-value=0.66 Score=38.86 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccc-c---c
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGED-Q---H 151 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---~ 151 (350)
.++.++.|..+| |.++++..............|..+..-|+-+.+++-+ |+.++++++.............. . .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 456788998888 9999994433333344444599999999888777776 59999999986554331100000 0 0
Q ss_pred eeeeccCCceEEEE--ecCCe--EEEEeCCCcEEEEECCCc-----eEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 152 SVLKGHNGSITALA--FSASH--LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 152 ~~~~~~~~~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
.........+...+ -...+ .++.....+|.+|..... +..+++. -...+.+++|. ++.++.+..+
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 00111223344444 11222 444444558888877652 4556665 34778899998 4555555443
No 378
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.10 E-value=0.47 Score=44.71 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-------C-------------ceEEEEecCCceeEEEEc--CCCcEEEEEccCCeEEEE
Q 045370 76 GTTFFVSSSLDATCKVWDLGS-------G-------------ILIQTQVYPQAVTAIAFH--PGEQLLFAGSIDGRIFVS 133 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~ 133 (350)
+.+.|+.|..||.|.+|.+.+ . ++...+..+..++.++++ ...++||+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 457899999999999997631 0 012224456789999998 788899999888888887
Q ss_pred eCCccccccccccccccceeeeccCCceEEEEecCC-----e---EEEEeCCCcEEEEEC
Q 045370 134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS-----H---LISASEDKTVCLWDV 185 (350)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~---l~s~~~dg~v~iwd~ 185 (350)
-+....... ....-..|...|-+|.|-++ | +++++-.|.+.+|++
T Consensus 193 af~l~~~r~-------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERF-------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccc-------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 665321100 00001125566778887543 3 777888999999887
No 379
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.08 E-value=0.34 Score=45.08 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=68.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEc--CCCcEEEEEccCCeEEEEeCCccccccccccccccce-
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFH--PGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS- 152 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 152 (350)
...+.-+....+.|||.+.+...... ...+.|.++.|. |+++.+++.+-...|.+|--........ ...-.+++
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~i~~ 120 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAPIRK 120 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-CcccceeEE
Confidence 33333344457899999988866653 458899999996 5888888888889999986532211110 00111111
Q ss_pred -eeeccC-CceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370 153 -VLKGHN-GSITALAFSASH-LISASEDKTVCLWDVT 186 (350)
Q Consensus 153 -~~~~~~-~~i~~~~~~~~~-l~s~~~dg~v~iwd~~ 186 (350)
.+..|+ .+|.+..|.++| +++|+ ++.+.|+|-.
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 122333 578999999999 66555 5578898754
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.3 Score=40.10 Aligned_cols=140 Identities=18% Similarity=0.143 Sum_probs=89.6
Q ss_pred eEEEEeeCCCcEEEEEeCCCcE-EEEeCCCCceEEEEec---CCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCcc
Q 045370 68 TGLLTISGGTTFFVSSSLDATC-KVWDLGSGILIQTQVY---PQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFL 138 (350)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~d~~v-~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 138 (350)
..++++|..+.-++.+-.-|+. .++|....+....+.. ..---.=+|+|||.+|+..-.| |.|-+||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~- 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE- 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence 3456666555556666555553 6788888776655431 1122344699999999987543 7999999984
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------------------CCcEEEEECCCceEEEEec---
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------------------DKTVCLWDVTRRVSIRRFN--- 195 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------------------dg~v~iwd~~~~~~~~~~~--- 195 (350)
.-..+-.+..|.-....+.+.+|| ++.+.. .-.+.+.|..+|.++....
T Consensus 150 --------~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 150 --------GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred --------ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 233444777888888899999999 333321 0134445555666554432
Q ss_pred -cCCCceeEEEEEccCCeEEee
Q 045370 196 -HKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 196 -~~~~~v~~l~~~~~~~~l~~~ 216 (350)
-+...+..++..++|..++.+
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEE
Confidence 234568888999999887744
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.045 Score=43.17 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=84.3
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (350)
+..-+.||.|.-++++.-+..... -+... .....-+..+++|+.+|.|++|......... ..+..-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---------d~~~s~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---------DRVCSG 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHH---------Hhhhcc
Confidence 444567888888887654322211 11111 2223346789999999999999877211100 011112
Q ss_pred CCceEEEEec-CCe--EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeEEeee-cCccccccccCCcc
Q 045370 158 NGSITALAFS-ASH--LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLLSEVS-NCQRKLKKDRMPSL 231 (350)
Q Consensus 158 ~~~i~~~~~~-~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 231 (350)
...|.++-.. .++ ..+++.||.||.|++.-++.+.....|. .++..+..+..++++..+- +-+.+++.|.+.++
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2333333322 232 7788899999999999888888777777 6777777787888887662 22455555544443
No 382
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.91 E-value=1.2 Score=39.85 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC-CCceeEEEEEccCCeEE
Q 045370 158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK-KGVVTNLVVIRQSSLLS 214 (350)
Q Consensus 158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~ 214 (350)
.+++..|++||++ +|.-..+|.+.+....-.+.+..+... ......+.|.-+...++
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 3689999999998 666677899988877666666666533 34667888877654443
No 383
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.63 Score=36.45 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=74.0
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec-cC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG-HN 158 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (350)
..-.-.+|.-..+|.++-+.+..+..++.-..++. ++..|+.++....++.-|..+........+. ..+ .-
T Consensus 104 y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT------~~g~pv 175 (262)
T COG3823 104 YQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT------DDGVPV 175 (262)
T ss_pred EEEEeccceeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE------ECCeec
Confidence 33445678888999999888888887777777765 5566777766677777777665443322111 111 01
Q ss_pred CceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec------------cCCCceeEEEEEccC-CeEEee
Q 045370 159 GSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN------------HKKGVVTNLVVIRQS-SLLSEV 216 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~v~~l~~~~~~-~~l~~~ 216 (350)
..++.+.|-... +|-.-.+..|...|..+|+.+.-+. .+......+++.|++ +++++|
T Consensus 176 ~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 176 SKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 122333333322 2222233344444555555544432 245578889999987 555543
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.82 E-value=0.39 Score=38.26 Aligned_cols=108 Identities=9% Similarity=0.013 Sum_probs=67.6
Q ss_pred cCCceeEEEEcCCCcEEEEE-ccCCeEEEEe--CCccccccccccccccceeeec----cCCceEEEEecCCe--EEEEe
Q 045370 105 YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSP--LKFLLLEDHFIVGEDQHSVLKG----HNGSITALAFSASH--LISAS 175 (350)
Q Consensus 105 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~--l~s~~ 175 (350)
.-.--+.++|+.+.+.++.. +.+-.|.-|| ..++.......+ ..++. .....-.++...+| ++++-
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i-----~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI-----FDLRKSQPFESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCccee-----EEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence 33445678898877766554 4566776676 555554432211 11111 11112234445566 55566
Q ss_pred CCCcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeee
Q 045370 176 EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVS 217 (350)
Q Consensus 176 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~ 217 (350)
..++|...|..+|+.+.++.-....++++||-- +-..+.++.
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 778999999999999999988888999999974 334555444
No 385
>PHA02713 hypothetical protein; Provisional
Probab=95.80 E-value=0.16 Score=47.25 Aligned_cols=92 Identities=8% Similarity=-0.038 Sum_probs=46.2
Q ss_pred cEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCc-cccccccccccccceeeeccC
Q 045370 88 TCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKF-LLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (350)
.+..||..+++.... +.....-.+++. -++...+.|+.+ ..+..||..+ ..... +..+....
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~--------~~~m~~~r 503 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL--------ITTTESRL 503 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE--------ccccCccc
Confidence 477888887765433 222211112222 256666667654 2467788775 22211 11222222
Q ss_pred CceEEEEecCCe-EEEEeCCC--cEEEEECCCce
Q 045370 159 GSITALAFSASH-LISASEDK--TVCLWDVTRRV 189 (350)
Q Consensus 159 ~~i~~~~~~~~~-l~s~~~dg--~v~iwd~~~~~ 189 (350)
... +++...+. +++|+.|| .+..||..+.+
T Consensus 504 ~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 222 23333333 88888887 66777776644
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.7 Score=38.24 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=97.6
Q ss_pred ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 138 (350)
.+-...+.++.|+|.... |++......-.||=...|+.+.+++.. .....|.|-.++.+.++--.++.++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445566999999886555 555555566666666779999887633 34567888878888777777888888877654
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-E--EEEecc-------CCCceeEEEE
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-S--IRRFNH-------KKGVVTNLVV 206 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~--~~~~~~-------~~~~v~~l~~ 206 (350)
...-......-+...........-.++|.|.. |+.+-+-.-+.||...... . ++.... ....|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 21111000000111112224567789999977 8888877777777665322 1 111111 1235788889
Q ss_pred EccCC-eEEeeecCcccccc
Q 045370 207 IRQSS-LLSEVSNCQRKLKK 225 (350)
Q Consensus 207 ~~~~~-~l~~~~~~~~~~~~ 225 (350)
++... +|+.+..+..++.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred cCCCCcEEEEecCCceEEEE
Confidence 87654 44444444444443
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.71 E-value=1.4 Score=38.98 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=65.3
Q ss_pred CCCcEEEEeCCCCceEEEEecCC---ceeEEEEcC--CCcEEEEEc-cCCeEEEEeC-Ccccccccccc--ccc------
Q 045370 85 LDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHP--GEQLLFAGS-IDGRIFVSPL-KFLLLEDHFIV--GED------ 149 (350)
Q Consensus 85 ~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~--~~~------ 149 (350)
...++.+||+.+.+.++.+.... .+..+.|.. +..+=++++ -...|..|-- ..+......++ ..+
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 35679999999999999987542 355677654 444444433 3455555543 22221111111 110
Q ss_pred ---cceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC---ceEEEEecc----------------CCCceeEE
Q 045370 150 ---QHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR---RVSIRRFNH----------------KKGVVTNL 204 (350)
Q Consensus 150 ---~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~---~~~~~~~~~----------------~~~~v~~l 204 (350)
.+..+..-..-|+.|..|.+. .+++-.+|.|+.||+.. .+.+.++.. -.+...-|
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 011122224668999999887 55666899999999976 344444320 11234678
Q ss_pred EEEccCCeEEeeecCcccc
Q 045370 205 VVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~ 223 (350)
..|.||+.|..+++--..|
T Consensus 380 qlS~DGkRlYvTnSLys~W 398 (461)
T PF05694_consen 380 QLSLDGKRLYVTNSLYSAW 398 (461)
T ss_dssp EE-TTSSEEEEE----HHH
T ss_pred EEccCCeEEEEEeeccccc
Confidence 8999999888776644444
No 388
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.64 E-value=1.2 Score=37.98 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred eCCCcEEEEEeCCCcEEEEeCC-CCceEEEEe-----cCCc-eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc--c
Q 045370 74 SGGTTFFVSSSLDATCKVWDLG-SGILIQTQV-----YPQA-VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--F 144 (350)
Q Consensus 74 ~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~-----~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~ 144 (350)
|..+.-|.+-|.||.+....+. .|+...... ..++ ...-++...+..++-.+.+|.|+-.|+......-. +
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 3334457788889999998888 455543321 1122 22334444555555577889999888875432110 0
Q ss_pred cc-c-cccceeeeccCCceEEEEecCCe--EEEE---eCCC-------cEEEEECCCceEEEEeccCCCceeEEEEEccC
Q 045370 145 IV-G-EDQHSVLKGHNGSITALAFSASH--LISA---SEDK-------TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 145 ~~-~-~~~~~~~~~~~~~i~~~~~~~~~--l~s~---~~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 210 (350)
.. . .+....+ .++.-.-+++++.. |++- +.+| .|.++|+.+++.+.++.. ..++.++..+.+.
T Consensus 224 ~~~t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 224 SLLTDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD 300 (342)
T ss_dssp ESS-HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred cccCccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCC
Confidence 00 0 0000000 11222234555432 2221 1121 588889999999999973 3578899999887
Q ss_pred C-eEEeeecCccccccc
Q 045370 211 S-LLSEVSNCQRKLKKD 226 (350)
Q Consensus 211 ~-~l~~~~~~~~~~~~~ 226 (350)
+ +|++.+.....+.++
T Consensus 301 ~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVY 317 (342)
T ss_dssp S-EEEEEETTTTEEEEE
T ss_pred CcEEEEEcCCCCeEEEE
Confidence 5 666555443333333
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.1 Score=37.24 Aligned_cols=185 Identities=13% Similarity=0.105 Sum_probs=101.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 79 (350)
+.|+|+.+.|++......-.||=.. .+..++... ..-...-+|.|.. ++.+
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~---------------------------~GdlirtiPL~g~~DpE~Ieyig-~n~f 142 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTK---------------------------EGDLIRTIPLTGFSDPETIEYIG-GNQF 142 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEec---------------------------CCceEEEecccccCChhHeEEec-CCEE
Confidence 5788988877777665555554322 233333321 1122234456654 5677
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE-----E-----ec-CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQT-----Q-----VY-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE 148 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~-----~-----~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 148 (350)
+++--.++.+.++.+.....+.. + .+ ......++|+|....|+.+=+-.-+.+|........-......
T Consensus 143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~ 222 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL 222 (316)
T ss_pred EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence 77777788888887765532211 1 12 4467889999999888888777767777665222110000000
Q ss_pred ccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCC---------CceeEEEEEccCCeEE
Q 045370 149 DQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKK---------GVVTNLVVIRQSSLLS 214 (350)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~ 214 (350)
.+.....-.-..|.++.|++.. |+-+.+++.+.-.|... .++..+.-+. ...-.++..++|.+-+
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 0000000112346677788644 66677778777777763 3344432111 1345567777776555
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.60 E-value=1.6 Score=41.03 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCceEEEEeeCCCcEEEEEe------CCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-CeEEEEeC
Q 045370 65 SSVTGLLTISGGTTFFVSSS------LDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-GRIFVSPL 135 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~------~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~ 135 (350)
..+.+.+.++ ++..++... .|. .|.+++.. +.. ..+........-.|+|+|..+++.... ..+++.+.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4566777766 555444333 243 45555543 222 223233347888999999888777532 22222221
Q ss_pred Ccc-ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEE---EECCCce-EE---EEecc-CCCceeEE
Q 045370 136 KFL-LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCL---WDVTRRV-SI---RRFNH-KKGVVTNL 204 (350)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~i---wd~~~~~-~~---~~~~~-~~~~v~~l 204 (350)
... ............. . ...+.|..+.|+|+| ++... +|.|++ -....|. .+ ..+.. -...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~-~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVA-S--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhh-h--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 110 0000000011110 1 234679999999999 33333 577777 4434443 11 11222 22346889
Q ss_pred EEEccCCeEEeee
Q 045370 205 VVIRQSSLLSEVS 217 (350)
Q Consensus 205 ~~~~~~~~l~~~~ 217 (350)
.|.+++.+++...
T Consensus 503 ~W~~~~~L~V~~~ 515 (591)
T PRK13616 503 DWRTGDSLVVGRS 515 (591)
T ss_pred eEecCCEEEEEec
Confidence 9999999765443
No 391
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.57 E-value=0.25 Score=43.87 Aligned_cols=135 Identities=12% Similarity=0.140 Sum_probs=86.8
Q ss_pred eCCCcEE-EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC--------cEEEEEccCCeEEEEeCCcccccccc
Q 045370 74 SGGTTFF-VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE--------QLLFAGSIDGRIFVSPLKFLLLEDHF 144 (350)
Q Consensus 74 ~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~ 144 (350)
..+.+++ ..|+.-..+.-.|+.-|+++........+ -+.|.|+. ..|+ |-.+..|.-.|.+...
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g----- 548 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG----- 548 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccC-----
Confidence 3344443 45666677888899999999988877766 78888843 2344 4446666666666321
Q ss_pred ccccccceeee----ccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 145 IVGEDQHSVLK----GHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 145 ~~~~~~~~~~~----~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
..+.... .......+..-..+| ++.++..|-|++||--.-+.-..+++....|..+..+.+|+++++++..
T Consensus 549 ----NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 549 ----NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ----CceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 1111110 011223334444556 9999999999999965444334455666789999999999998877765
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.55 E-value=0.96 Score=36.17 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=63.0
Q ss_pred ceEEEEeeCCCcEEEEEeCCCcEEEEe--CCCCce-----EEEEec-----CCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370 67 VTGLLTISGGTTFFVSSSLDATCKVWD--LGSGIL-----IQTQVY-----PQAVTAIAFHPGEQLLFAGSIDGRIFVSP 134 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~~v~vwd--~~~~~~-----~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 134 (350)
-+.++|......+.++-+.+-+|.-|| ..+|.. +..+.. +.....++.+.+|++.+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356778766667777888888898888 445432 222221 11234566677888888888889999999
Q ss_pred CCccccccccccccccceeeeccCCceEEEEecCC
Q 045370 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS 169 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (350)
..+++. +..+.-....|++++|-..
T Consensus 240 p~tGK~----------L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKI----------LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcE----------EEEEEcCCCceEEEEecCC
Confidence 986543 3355556788999999754
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.11 Score=50.43 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=69.0
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED 142 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 142 (350)
..-..++.|+|.-....+.+..|+.|++..+..-. ....+......++++|+|.|..+++|...|++..|...-...
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-- 232 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-- 232 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--
Confidence 34456777877555557788899999998876433 333356778899999999999999999999999887652110
Q ss_pred ccccccccceeeeccCCceEEEEecCCe
Q 045370 143 HFIVGEDQHSVLKGHNGSITALAFSASH 170 (350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (350)
......+.. ....|.++.|-...
T Consensus 233 -~~ip~Pp~~----e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 233 -SEIPEPPVE----ENYRVLSVTWLSTQ 255 (1405)
T ss_pred -ecccCCCcC----CCcceeEEEEecce
Confidence 001111111 14689999998776
No 394
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.37 E-value=1.1 Score=35.54 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=77.5
Q ss_pred CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370 8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA 87 (350)
Q Consensus 8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 87 (350)
..|+.+...+.|.+|++... ..........-+.|..+.++. .|++++|--.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~--------------------------~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~ 81 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE--------------------------ECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKN 81 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC--------------------------CCceeEEEcchhheeEEEecc-ccceEEEEEeec
Confidence 45555466688999998721 222222233447788888765 467777743221
Q ss_pred ------cEEEE---eCC--CCce-----------------------EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370 88 ------TCKVW---DLG--SGIL-----------------------IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS 133 (350)
Q Consensus 88 ------~v~vw---d~~--~~~~-----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 133 (350)
.+++| +.. .... +..++...++.+++-+|-...|++|+ ++.+.+|
T Consensus 82 ~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf 160 (215)
T PF14761_consen 82 KRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLF 160 (215)
T ss_pred CCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEE
Confidence 45553 222 1111 11133456788899998655666665 5788999
Q ss_pred eCCccccccc--cccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEEC
Q 045370 134 PLKFLLLEDH--FIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV 185 (350)
Q Consensus 134 d~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~ 185 (350)
.+........ ....-+.........-.+..+++..+.+|..+ +-.++++.+
T Consensus 161 ~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 161 TLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEec-CCEEEEEEE
Confidence 8875543110 00010000011111223556666666555555 445666544
No 395
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.26 E-value=2.1 Score=38.34 Aligned_cols=109 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred EEEeeCCCcEEEE-EeCCC----cEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccC-----------CeEEE
Q 045370 70 LLTISGGTTFFVS-SSLDA----TCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSID-----------GRIFV 132 (350)
Q Consensus 70 ~~~~~~~~~~l~s-~~~d~----~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i 132 (350)
..+ ++++++++- -+..| .|+++|+.+|+.+... ... ....+.|.+++..|+-...+ ..|+.
T Consensus 129 ~~~-Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSV-SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEE-TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeE-CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 344 456666554 34445 4999999999776642 222 22349999998876655432 23777
Q ss_pred EeCCccccccccccccccceeeeccCC--ceEEEEecCCe---EEEEeC--C-CcEEEEECCCc
Q 045370 133 SPLKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH---LISASE--D-KTVCLWDVTRR 188 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~---l~s~~~--d-g~v~iwd~~~~ 188 (350)
|.+.+..... ...+..... ....+..++++ ++.... + ..+++.|+..+
T Consensus 207 ~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 207 HKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 7777543221 112223222 25678889888 333332 2 45888888874
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.21 E-value=0.74 Score=41.87 Aligned_cols=148 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred ccCCceEEEEeeCCCcEEEEEe--CCCcEEEEeCCCCceEEEEecCCceeEEEEcCC----CcEEEEEccCCeEEEEeCC
Q 045370 63 HKSSVTGLLTISGGTTFFVSSS--LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG----EQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~ 136 (350)
--.++.+++|. ++...++|.- .+|.+++-|-. . ++.-..|..+.|.|- ...+++.-....|.+|.+.
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---V---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCCcc---E---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34678899994 3444455543 34555444422 2 333345888999984 3355555668899999987
Q ss_pred ccccccccccccccceee-eccCCceEEEEecCCe--EEEEeCCCcEEEEECCC--ceEEEEeccCCCceeEEEEEccCC
Q 045370 137 FLLLEDHFIVGEDQHSVL-KGHNGSITALAFSASH--LISASEDKTVCLWDVTR--RVSIRRFNHKKGVVTNLVVIRQSS 211 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~ 211 (350)
............ +...+ ....--.....|+|.. |++-.....-.+++++. .+....+. ..+-|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~s-QtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMS-QTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceee-eeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 433222111000 00000 0011112346799988 33333333334555543 33444454 468899999999998
Q ss_pred eEEeeecC
Q 045370 212 LLSEVSNC 219 (350)
Q Consensus 212 ~l~~~~~~ 219 (350)
.|+++-+.
T Consensus 169 RLVVAvGS 176 (671)
T PF15390_consen 169 RLVVAVGS 176 (671)
T ss_pred EEEEEeCC
Confidence 77766554
No 397
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.20 E-value=0.16 Score=40.82 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEE---------------ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370 75 GGTTFFVSSSLDATCKVWDLGSGILIQTQ---------------VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 136 (350)
..++++++-+.+|.+++||+.+++.+... .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 35678999999999999999988765442 1335678888887777666654 5778888766
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.04 E-value=1 Score=43.09 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=50.4
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCc-cccccccccccc--cce--------eeeccCCceEEEEecCCe-----E
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKF-LLLEDHFIVGED--QHS--------VLKGHNGSITALAFSASH-----L 171 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~--~~~--------~~~~~~~~i~~~~~~~~~-----l 171 (350)
.|..|.++|+|.+++..+..|...+ .+.. +.....+..... ..+ ....+...|..+.|+|.+ |
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5889999999999998887664443 3321 110000000000 000 112345689999999974 8
Q ss_pred EEEeCCCcEEEEECCC
Q 045370 172 ISASEDKTVCLWDVTR 187 (350)
Q Consensus 172 ~s~~~dg~v~iwd~~~ 187 (350)
+.-..|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888999999999975
No 399
>PHA03098 kelch-like protein; Provisional
Probab=94.98 E-value=1.6 Score=40.65 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=35.8
Q ss_pred CCcEEEEEeCC-----CcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCccc
Q 045370 76 GTTFFVSSSLD-----ATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKFLL 139 (350)
Q Consensus 76 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 139 (350)
++.+++.||.+ ..+..||..+++.... +..+..-.+++. -++..++.|+.+ ..+..||..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56777788765 3477888887765433 222222222222 256666666632 457888887544
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.90 E-value=1.6 Score=40.83 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=38.9
Q ss_pred CCcEEEEEeCC------CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCC-----eEEEEeCCccc
Q 045370 76 GTTFFVSSSLD------ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDG-----RIFVSPLKFLL 139 (350)
Q Consensus 76 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 139 (350)
++.++++||.| .++..||..+++....-+ ....-..++. -+|...++|+.|| .+..||..+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCc
Confidence 45788899998 357888988887544322 1111112222 2678888898886 46667766543
No 401
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.82 E-value=0.2 Score=40.38 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee-------ccCCceEEEEecCCe--EEEEe
Q 045370 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK-------GHNGSITALAFSASH--LISAS 175 (350)
Q Consensus 105 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--l~s~~ 175 (350)
...++.. +..++.++++.+.+|.+++||+.+.+....... ....+. .....|..+.++.+| +++-
T Consensus 11 Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S---i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l- 84 (219)
T PF07569_consen 11 LGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS---IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL- 84 (219)
T ss_pred cCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc---HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-
Confidence 3444444 445788999999999999999998765432100 000111 455678888888888 4444
Q ss_pred CCCcEEEEECCC
Q 045370 176 EDKTVCLWDVTR 187 (350)
Q Consensus 176 ~dg~v~iwd~~~ 187 (350)
.+|..+.||..-
T Consensus 85 sng~~y~y~~~L 96 (219)
T PF07569_consen 85 SNGDSYSYSPDL 96 (219)
T ss_pred eCCCEEEecccc
Confidence 467788887653
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.74 Score=45.12 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=80.0
Q ss_pred EeCCCcEEEEeCCCCceEE--------E----EecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccc
Q 045370 83 SSLDATCKVWDLGSGILIQ--------T----QVYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGED 149 (350)
Q Consensus 83 ~~~d~~v~vwd~~~~~~~~--------~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 149 (350)
.+.+-.|..||+++-.... . +.......++.|+|.-. ..++...|+.|.+..+......
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-------- 191 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-------- 191 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh--------
Confidence 3344478889987532211 1 12234567888988543 4566677888888776532211
Q ss_pred cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEeeec
Q 045370 150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
+.. -.-....+|++|+|.| ++.|-..|++.-|-.. ++....+.. ....|.+|+|.....++++-+.
T Consensus 192 -v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 192 -VTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred -hcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence 111 1234678999999999 9999999999988654 343333321 2357999999999888885443
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.61 E-value=0.019 Score=54.01 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=90.6
Q ss_pred eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC--CceEEEE------ecCCceeEEEEcC---CCcEEEEEccCC
Q 045370 60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS--GILIQTQ------VYPQAVTAIAFHP---GEQLLFAGSIDG 128 (350)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~------~~~~~v~~~~~~~---~~~~l~~~~~dg 128 (350)
.++..+.|-.+.|-+.+...+. -.-|.+.|||+.- |+....+ +....+.-+.|+| +..++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 3566777888877654443333 3446788999763 4332221 2334566777776 566777787888
Q ss_pred eEEEEeCCccccccccccccccceeeeccCCceEEEE-----------ecCCe--EEEEeCCCcEEEEECC-----CceE
Q 045370 129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA-----------FSASH--LISASEDKTVCLWDVT-----RRVS 190 (350)
Q Consensus 129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~--l~s~~~dg~v~iwd~~-----~~~~ 190 (350)
.+++.....-.. ..+.+|..+++.++ .+||| +++++.||.+++|.+. ..++
T Consensus 206 ~i~lL~~~ra~~-----------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc 274 (1283)
T KOG1916|consen 206 EIRLLNINRALR-----------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC 274 (1283)
T ss_pred ceeEeeechHHH-----------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhh
Confidence 888877653221 13344665555544 57888 8888888887777643 3345
Q ss_pred EEEeccCC-CceeEEEEEccC---------CeEEeeecCccccccc
Q 045370 191 IRRFNHKK-GVVTNLVVIRQS---------SLLSEVSNCQRKLKKD 226 (350)
Q Consensus 191 ~~~~~~~~-~~v~~l~~~~~~---------~~l~~~~~~~~~~~~~ 226 (350)
++..+.|. ++-.|.-++.+. .++++++.-++-...|
T Consensus 275 lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w 320 (1283)
T KOG1916|consen 275 LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFW 320 (1283)
T ss_pred hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEe
Confidence 55666676 343333343321 3455555555555555
No 404
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.54 E-value=0.0057 Score=53.40 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=98.4
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCccccc
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFLLLE 141 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~ 141 (350)
+-.......|-+.+.+ ++.++.+..|..||-. ++.......++....++|+.++..+++ +-..+.+.+||+.+....
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3334444567675655 7777788899999944 566656667778888999998876554 556799999999853211
Q ss_pred cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
. +..--.|.... +.|++.+ ++.+...|.+.|++..+.+.+.....|...++++++.+.+..+...
T Consensus 111 q--------LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 111 Q--------LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred H--------HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 1 00000122222 6788877 8888889999999998877666665588889999999988766633
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.48 E-value=3.4 Score=36.86 Aligned_cols=140 Identities=9% Similarity=0.080 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
+...++.|+..|.++||+...+. .+.......+|..+..-+ ....|++ =.-..+.+|.+.........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc-
Confidence 45789999999999999986543 333455678888887643 2234444 34677888887322111000
Q ss_pred cccccceeeeccC--CceEEEEecC----C---eEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370 146 VGEDQHSVLKGHN--GSITALAFSA----S---HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 146 ~~~~~~~~~~~~~--~~i~~~~~~~----~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
...-.+.....|. .....+++-| . .+.+=+.||.+.+|+-+.-.....+.. .--...++|.+....++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 0001111222232 2233333322 1 288889999999999887655544443 2222345677766655555
Q ss_pred ec
Q 045370 217 SN 218 (350)
Q Consensus 217 ~~ 218 (350)
+.
T Consensus 193 ss 194 (418)
T PF14727_consen 193 SS 194 (418)
T ss_pred cC
Confidence 44
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.38 E-value=1.6 Score=39.87 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=71.2
Q ss_pred ccccCCceEEEEeeCCC---cEEEEEeCCCcEEEEeCC-----CCceEEE----EecCC--ceeEEEEcCCCcEEEEEcc
Q 045370 61 LEHKSSVTGLLTISGGT---TFFVSSSLDATCKVWDLG-----SGILIQT----QVYPQ--AVTAIAFHPGEQLLFAGSI 126 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~---~~l~s~~~d~~v~vwd~~-----~~~~~~~----~~~~~--~v~~~~~~~~~~~l~~~~~ 126 (350)
.+.-..|.++.|.|... ..+++.-....|.||.+. .++.+.. +..+- -...+.|||....|++-+.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 45557789999987532 235555667899999976 2333332 11122 2456889999998887766
Q ss_pred CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEE-EeCCCcEEEEECC
Q 045370 127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS-ASEDKTVCLWDVT 186 (350)
Q Consensus 127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s-~~~dg~v~iwd~~ 186 (350)
...-.+++++.. ..++..--...+-|.|.+|.+|| |+. .+..=.-+|||-.
T Consensus 133 ~dvSV~~sV~~d---------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCD---------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeC---------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 555456666532 22222222456789999999999 332 2233356788753
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.32 E-value=0.065 Score=50.62 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=40.3
Q ss_pred EcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC-CceEEEEecCC----------e-EEEEe-CCCcE
Q 045370 114 FHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN-GSITALAFSAS----------H-LISAS-EDKTV 180 (350)
Q Consensus 114 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~----------~-l~s~~-~dg~v 180 (350)
++|||+.++.++.||.++.|.+.-..... ..+....+.|. .+-.|..++.. . +++++ .+..+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~-----~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~ 317 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIV-----HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREE 317 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeecccc-----HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcce
Confidence 67888888888888888777765322111 11222334444 22233333321 1 33333 45678
Q ss_pred EEEECCCceEE
Q 045370 181 CLWDVTRRVSI 191 (350)
Q Consensus 181 ~iwd~~~~~~~ 191 (350)
++|.....+++
T Consensus 318 k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 318 KFWAEAPWQCL 328 (1283)
T ss_pred eEeeccchhhh
Confidence 99988777766
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.14 E-value=3.8 Score=36.11 Aligned_cols=149 Identities=13% Similarity=0.025 Sum_probs=73.5
Q ss_pred CCceEEEEeeCCCcEEEEEe-----------CCC-cEEEEeCCC--CceE--EEEe-cCCceeEEEEcCCCcEEEEEccC
Q 045370 65 SSVTGLLTISGGTTFFVSSS-----------LDA-TCKVWDLGS--GILI--QTQV-YPQAVTAIAFHPGEQLLFAGSID 127 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~-----------~d~-~v~vwd~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d 127 (350)
.....++|.+ ++.++++-. ..+ .|.+++-.+ |..- ..+. .-.....+++.+++ +++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4456677755 555555432 223 676666432 3321 2222 23346889999888 4445544
Q ss_pred CeEEEEeCCccccccccccccccceeeec----cCCceEEEEecCCe-EEE-EeC-------------------CCcEEE
Q 045370 128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKG----HNGSITALAFSASH-LIS-ASE-------------------DKTVCL 182 (350)
Q Consensus 128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~-l~s-~~~-------------------dg~v~i 182 (350)
...++.|......... ........+.. +......++|.|++ |.. -+. .|.|.-
T Consensus 91 ~i~~~~d~~gdg~ad~--~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 91 DILFLRDKDGDDKADG--EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred eEEEEeCCCCCCCCCC--ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4333445432111100 00000011211 23457789999998 333 221 134555
Q ss_pred EECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370 183 WDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 183 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
+|..+++. ..+.........++|+|+|+++++-..+
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 56655443 2232222345789999999988754433
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.11 E-value=0.27 Score=27.64 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=27.6
Q ss_pred CCceEEEEeeCCC--cEEEEEeCCCcEEEEeCCCC
Q 045370 65 SSVTGLLTISGGT--TFFVSSSLDATCKVWDLGSG 97 (350)
Q Consensus 65 ~~v~~~~~~~~~~--~~l~s~~~d~~v~vwd~~~~ 97 (350)
+.|.++.|+|.++ .+|+.+-.-+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4678999987666 78998888999999999953
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.07 E-value=2.9 Score=34.58 Aligned_cols=103 Identities=15% Similarity=-0.013 Sum_probs=57.4
Q ss_pred CceEEEEeeCCCcEEEEEeCCCcEEEEe-CCCCceEEE-E--e-cCCceeEEEEcCCCcEEEEEc---cCCeEEEEeCCc
Q 045370 66 SVTGLLTISGGTTFFVSSSLDATCKVWD-LGSGILIQT-Q--V-YPQAVTAIAFHPGEQLLFAGS---IDGRIFVSPLKF 137 (350)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~-~--~-~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~ 137 (350)
.+..-.|.+. +...+....+...+++. ..++..... . . ....|..+.++|||..++... .++.|.+--+..
T Consensus 67 ~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 67 SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred ccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 5555667654 55444545555566663 333333222 2 1 122899999999999887665 357777765542
Q ss_pred cccccccccccccceeeeccCCceEEEEecCCe
Q 045370 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH 170 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (350)
..-.... .-..+..........++.+.|.++.
T Consensus 146 ~~~g~~~-~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 146 DGDGVPR-RLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred CCCCCcc-eeccceEecccccCcceeeeecCCC
Confidence 2211000 0111222233345689999999998
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=2.3 Score=37.65 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=77.5
Q ss_pred CCCcEEEEeCCCC--ceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 85 LDATCKVWDLGSG--ILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 85 ~d~~v~vwd~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
..|.+.=|.+... .+..+ ....++|.++.|++|.+.+++--.+..|.+++........ .....-+.....
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l------~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL------EYTQECKTKNAN 114 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh------HHHHHhccCcce
Confidence 4455666665432 12222 3456799999999999999999999999999874221110 011122233456
Q ss_pred eEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 161 ITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
|....|+.+. +|--...| +-+|-... .+.++..+.|...|.-..|.++.+.+..+++
T Consensus 115 IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred eEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 8889998887 66555444 55664432 2234444556667777778888775554444
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=2.9 Score=39.19 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=66.6
Q ss_pred eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEec--CCe--EEEEeCCCcEEEEE
Q 045370 109 VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASH--LISASEDKTVCLWD 184 (350)
Q Consensus 109 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~--l~s~~~dg~v~iwd 184 (350)
+.-+.-+.-++..++-+....+.|||.+.+..+.. ..+ ...+.|.++.|. |++ +++.+..+.|.+|-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~--------~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE--------ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe--------eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 44444444455555555557899999986543221 122 446789999986 555 77778888898885
Q ss_pred CC---------CceEEEEec--cCC-CceeEEEEEccCCeEEeeecCc
Q 045370 185 VT---------RRVSIRRFN--HKK-GVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 185 ~~---------~~~~~~~~~--~~~-~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
-. +...++.+. .+. .+|.+..|.++|.+++++++.-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNql 150 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQL 150 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEE
Confidence 31 123444442 233 5899999999999998666543
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=93.67 E-value=2.7 Score=38.59 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCC---cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370 76 GTTFFVSSSLDA---TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138 (350)
Q Consensus 76 ~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 138 (350)
++.+.+.||.++ .+..||..+++....-. .+..-.+++ .-++...+.| |.+.+||..+.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCCC
Confidence 567777877654 47789988776544321 111111222 2245555555 35677887654
No 414
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.63 E-value=2 Score=31.18 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=70.8
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC----CC
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG----GT 77 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~ 77 (350)
.|......|+.++.-|.|.|++.......... ....+ .+..-+..|++++.-+- +.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------~~~~i-~~LNin~~italaaG~l~~~~~~ 64 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------QDSDI-SFLNINQEITALAAGRLKPDDGR 64 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc-------------------ccCce-eEEECCCceEEEEEEecCCCCCc
Confidence 35666678999999999999987621100000 01111 22334567777765442 34
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC----CCcEEEEEccCCeEEEEeCC
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP----GEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~ 136 (350)
..|+.|+ ..++..||+..+.-+.....++.++++.+-. ...++++| .+..|.-||..
T Consensus 65 D~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 65 DCLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred CEEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 6677776 5679999999887776666778888888743 23344444 46777777765
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.59 E-value=5 Score=35.66 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=64.3
Q ss_pred EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee--ccCCceEEEEecCCe-EEEEeCCCc
Q 045370 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK--GHNGSITALAFSASH-LISASEDKT 179 (350)
Q Consensus 103 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-l~s~~~dg~ 179 (350)
......+..+.+.+++..++++ .+|.+.. ....+..... ....... .....++.+.+.+++ ++.++.+|.
T Consensus 277 ~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~-----~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~ 349 (398)
T PLN00033 277 RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED-----FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGI 349 (398)
T ss_pred CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc-----cceeecccCCCCcceEEEEEcCCCcEEEEECCCc
Confidence 3445678899999888887766 4565543 2222110000 0011111 122358889999888 778888887
Q ss_pred EEEEECCCceEEEEe---ccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370 180 VCLWDVTRRVSIRRF---NHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223 (350)
Q Consensus 180 v~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~~~~~~ 223 (350)
+.... ..++.-... ..-...++.+.|.++++.++ .+.++.++
T Consensus 350 v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il 394 (398)
T PLN00033 350 LLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLL 394 (398)
T ss_pred EEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEE
Confidence 76664 333332222 22345788999988888877 44444444
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.56 E-value=4.1 Score=34.59 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=75.7
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce-EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC-cccc
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL-IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK-FLLL 140 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~ 140 (350)
-...+..+.. .+++.+++++.......-||...... .+.......|..+.|.|++...+++ ..|.|+.=+.. ....
T Consensus 143 ~~gs~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITR-SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEE-CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 3456666655 45778777776666667788764332 2333456789999999997776655 78888877621 1110
Q ss_pred ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceE---EEEeccCCCceeEEEEEccCCeEEee
Q 045370 141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVS---IRRFNHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
- .+.........-.+..++|.++. +.+++..|.+.. ....|+. ......-.+.+..+.|.+..+-++ .
T Consensus 221 w------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l 292 (302)
T PF14870_consen 221 W------SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L 292 (302)
T ss_dssp E---------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred c------ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence 0 00001111223358899999887 666666776543 4444433 322233355688999987777666 4
Q ss_pred ecCcccc
Q 045370 217 SNCQRKL 223 (350)
Q Consensus 217 ~~~~~~~ 223 (350)
+.++.++
T Consensus 293 G~~G~ll 299 (302)
T PF14870_consen 293 GQDGVLL 299 (302)
T ss_dssp -STTEEE
T ss_pred CCCcEEE
Confidence 4444444
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.55 E-value=0.31 Score=27.42 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.3
Q ss_pred CceeEEEEcCCC---cEEEEEccCCeEEEEeCCc
Q 045370 107 QAVTAIAFHPGE---QLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 107 ~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 137 (350)
+.++++.|+|.. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4777777789999999994
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.54 E-value=4.2 Score=34.56 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=65.9
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370 3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS 82 (350)
Q Consensus 3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 82 (350)
-++||+++++++.-....-||-- ...-..........|..+.|.+ ++.+.+
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G---------------------------~~~w~~~~r~~~~riq~~gf~~-~~~lw~- 202 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPG---------------------------QTTWQPHNRNSSRRIQSMGFSP-DGNLWM- 202 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT----------------------------SS-EEEE--SSS-EEEEEE-T-TS-EEE-
T ss_pred ECCCCcEEEEECcccEEEEecCC---------------------------CccceEEccCccceehhceecC-CCCEEE-
Confidence 46888888877665555566644 1222223334567899999976 455444
Q ss_pred EeCCCcEEEEeC-CCCceEEE--Ee---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370 83 SSLDATCKVWDL-GSGILIQT--QV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG 156 (350)
Q Consensus 83 ~~~d~~v~vwd~-~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
....|.|++=+. ........ .+ ..-.+..++|.+++...++|+ .|.+.+ ....++.-. .......
T Consensus 203 ~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~-------~~~~~~~ 273 (302)
T PF14870_consen 203 LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQ-------KDRVGEN 273 (302)
T ss_dssp EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-E-------E-GGGTT
T ss_pred EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccce-------ECccccC
Confidence 448888888772 22221111 11 122478999998877767665 554433 222222111 0001122
Q ss_pred cCCceEEEEecCC-eEEEEeCCCcEEEE
Q 045370 157 HNGSITALAFSAS-HLISASEDKTVCLW 183 (350)
Q Consensus 157 ~~~~i~~~~~~~~-~l~s~~~dg~v~iw 183 (350)
-....+.+.|.+. .-+.-+.+|.|--|
T Consensus 274 ~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 3456777887544 43344557766544
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.45 E-value=5.1 Score=35.30 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=31.1
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-----c--eEEE-Eec-----CCceeEEEEcCCCcEEEEEc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-----I--LIQT-QVY-----PQAVTAIAFHPGEQLLFAGS 125 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~--~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~ 125 (350)
-.....+++.+ ++ +++ +......++.|.... + .+.. +.. ......++|.|+|.+.++.+
T Consensus 71 l~~p~Gi~~~~-~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 71 LSMVTGLAVAV-GG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCCccceeEec-CC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 34557777755 55 444 444443334454321 1 1211 222 23477899999998766544
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.35 E-value=6.4 Score=37.96 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=49.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccc-cccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--C
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRL-LKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--T 77 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~ 77 (350)
|.+||+|.+||..|..| |.|-.+... ... ...........++.+.. ... .....+...|..+.|+|.. +
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v-----~~~-~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPV-----DER-FFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEe-----chh-hccCCCCceEEEEEEcCCCCCC
Confidence 45789999999888765 555544310 000 00000000111111111 111 1123456788999998753 5
Q ss_pred cEEEEEeCCCcEEEEeCCCC
Q 045370 78 TFFVSSSLDATCKVWDLGSG 97 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~ 97 (350)
..|+.=..|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 67778888999999999753
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.33 E-value=0.0088 Score=52.28 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=92.3
Q ss_pred eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370 2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV 81 (350)
Q Consensus 2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 81 (350)
.|-|.+.-|+.++.+..+..||-. +.. ..-...++....++|.......++
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a----------------------------gq~-~le~n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA----------------------------GQV-ILELNPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh----------------------------cce-ecccCCchhHhhhhhccccchhhh
Confidence 355666557777777777777754 111 111223455566777664445566
Q ss_pred EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370 82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS 160 (350)
Q Consensus 82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (350)
.+-..+.+.+||+.+...... ......-.-+.|++....++.+...|.+.+++..... .....-.|...
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR----------~iiv~Gkh~RR 161 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----------RIIVMGKHQRR 161 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh----------hhhhhcccccc
Confidence 677889999999986532221 2211122227789988899999889999999877422 22233348899
Q ss_pred eEEEEecCCe-EEEEeCCCcEEEEE
Q 045370 161 ITALAFSASH-LISASEDKTVCLWD 184 (350)
Q Consensus 161 i~~~~~~~~~-l~s~~~dg~v~iwd 184 (350)
++++++.+.+ .+.++.|..+.+-.
T Consensus 162 gtq~av~lEd~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 162 GTQIAVTLEDYVILCDCDNTLSVTT 186 (615)
T ss_pred eeEEEecccceeeecCcHHHHHHhh
Confidence 9999999988 77777776555443
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.86 E-value=1.5 Score=38.98 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=57.3
Q ss_pred CeecCCCCEEEEEeCCCcEEE---EeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeC-
Q 045370 1 MVFSDDGFLLISGSDDGMICV---WSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISG- 75 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~- 75 (350)
++.+|+|.+||.+..+..+.+ |+...... ....+.. .....+.. ....|+++.+.|-
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~------------~~~~~~~------~~~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGE------------NENTYSI------SWSGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCC------------CCCeEEE------EeeeeccCCCCCEEEEEEEEEee
Confidence 467899999999988776665 54321000 0000000 00001111 1156777766653
Q ss_pred ---------CCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcC
Q 045370 76 ---------GTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHP 116 (350)
Q Consensus 76 ---------~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~ 116 (350)
+...++.|..+|.|++|... |..+.. .-|..+|..+....
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEecc-chHHHHHhcCccceEEEEecc
Confidence 34678999999999999974 554444 45778888887754
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.74 E-value=2.3 Score=39.46 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=67.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCc--eeE----------EEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQA--VTA----------IAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI 145 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--v~~----------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 145 (350)
..++.++.++.|.-.|..+|+.+..+..... +.. +++ .+..++.++.|+.+.-+|..+++......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3566777788999999999998887653221 111 122 24567788889999999999887654322
Q ss_pred cccccceeeeccCCceE-EEEecCCeEEEEeC------CCcEEEEECCCceEEEEec
Q 045370 146 VGEDQHSVLKGHNGSIT-ALAFSASHLISASE------DKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~i~-~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 195 (350)
... .. ....++ ......+.++.+.. +|.|+-+|.++|+.+..+.
T Consensus 148 ~~~-----~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NGD-----YK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccc-----cc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 110 00 000111 11122223555432 6899999999999887764
No 424
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.69 E-value=8.5 Score=35.80 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=28.8
Q ss_pred EEEEeCCCcEEEEECCCceEEEEeccCCCce-eEEEEEccCCe
Q 045370 171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVV-TNLVVIRQSSL 212 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~~ 212 (350)
++.+..||.++.+|.++|+.+..+....+.. .=+.|.-+|+.
T Consensus 475 vf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 475 VFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred EEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 6677789999999999999999887432211 12334456653
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=92.63 E-value=8.2 Score=35.47 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCcEEEEEeCC--CcEEEEeCCCCceEEEEecCCce--eEEEEcCCCcEEEEEccCC---eEEEEeCCcc
Q 045370 76 GTTFFVSSSLD--ATCKVWDLGSGILIQTQVYPQAV--TAIAFHPGEQLLFAGSIDG---RIFVSPLKFL 138 (350)
Q Consensus 76 ~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 138 (350)
++.+.+.||.+ .++..||..+++....-+.+.+. .+++ .-+|...+.|+.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence 56777788764 35788888776544332222111 1222 22677777777553 4667777654
No 426
>PHA03098 kelch-like protein; Provisional
Probab=92.58 E-value=4.4 Score=37.77 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCcEEEEEeCC------CcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccC--------CeEEEEeCCccc
Q 045370 76 GTTFFVSSSLD------ATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSID--------GRIFVSPLKFLL 139 (350)
Q Consensus 76 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~ 139 (350)
++.+++.||.+ ..+..||+.+++.......+ ....+++. .++..++.|+.+ ..+.+||..+..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 55677777742 35788998876654332211 11122222 255666666542 237888887644
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=4.3 Score=40.81 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=51.0
Q ss_pred CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc-------c-------cccceeee-ccCCceEEEEecCCe
Q 045370 106 PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV-------G-------EDQHSVLK-GHNGSITALAFSASH 170 (350)
Q Consensus 106 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~-------~~~~~~~~-~~~~~i~~~~~~~~~ 170 (350)
.-.|.|+....+|+.|++|- || .+|.+........+.. + ...+..+. .+..+|..+......
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 45688998777887777765 55 4555433221111100 0 00022333 567899999998776
Q ss_pred --EEEEeCCCcEEEEECCC
Q 045370 171 --LISASEDKTVCLWDVTR 187 (350)
Q Consensus 171 --l~s~~~dg~v~iwd~~~ 187 (350)
+.+-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 88999999999999976
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.07 E-value=5.1 Score=31.82 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=65.5
Q ss_pred cEEEEEeCCCcEEEEeCCC--CceEEEEecCCceeEEEEcCCCcEEEEEccC---C---eEEEE-eCCccccccc----c
Q 045370 78 TFFVSSSLDATCKVWDLGS--GILIQTQVYPQAVTAIAFHPGEQLLFAGSID---G---RIFVS-PLKFLLLEDH----F 144 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~~~~~~~----~ 144 (350)
+.|..+...+.|.+|++.. ......+..-+.|..+.++..|+++++--.+ . .+++| +.+....... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4444445667899999883 4556667778999999999999999997543 2 45554 2221100000 0
Q ss_pred ccc-----------cccceeee-ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce
Q 045370 145 IVG-----------EDQHSVLK-GHNGSITALAFSASH--LISASEDKTVCLWDVTRRV 189 (350)
Q Consensus 145 ~~~-----------~~~~~~~~-~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~ 189 (350)
..+ ..++..+. .-..++.+++..|-. |+.|+. +.+.+|.+....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~ 166 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQT 166 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEE
Confidence 000 00011111 113467788887754 777774 478899876443
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.66 E-value=1.2 Score=24.62 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEE
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAF 114 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~ 114 (350)
..++++...+++|.++|..++..+..+........++|
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34455566688999999999988888776555566655
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.47 E-value=5 Score=39.10 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=75.0
Q ss_pred cEEEEeCCCCceEEEEecC--C---ceeEEEEcCC-CcEEEEEcc----------CCeEEEEeCCccccccccccccccc
Q 045370 88 TCKVWDLGSGILIQTQVYP--Q---AVTAIAFHPG-EQLLFAGSI----------DGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
.++++|-++.+.+...... . .+.++.|..| +.++++|+. .|.|.+|.+... ..+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------~~L 820 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------NSL 820 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------Cce
Confidence 3677787777766664422 2 3555568877 677787753 467777766531 111
Q ss_pred eeeec--cCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 152 SVLKG--HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 152 ~~~~~--~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
..... -.+.+.++..-...++ ++-+..|++|+..+.+.++.-..+..++..+...-.|..+++|.-
T Consensus 821 ~~v~e~~v~Gav~aL~~fngkll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEFNGKLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred eeeeeeeeccceeehhhhCCeEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence 11111 2345555544433333 445678999999998777766667788888888888888876654
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.25 E-value=2.1 Score=40.60 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-CCCcEEEEEe
Q 045370 6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-GGTTFFVSSS 84 (350)
Q Consensus 6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~ 84 (350)
+...|+.|.+||.|.+|.+++............... ..+....+. ....-...+++++++. ....++|.++
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-------~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-------FSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-------cccccCCCC-eEeecCCceeEEEEEecCcceEEEEec
Confidence 346789999999999999875333222220000000 000001111 1222345889998862 2456777777
Q ss_pred CCCcEEEEeCCCC--ceEE--EEecCCceeEEEEcCCC---c---EEEEEccCCeEEEEeCC
Q 045370 85 LDATCKVWDLGSG--ILIQ--TQVYPQAVTAIAFHPGE---Q---LLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 85 ~d~~v~vwd~~~~--~~~~--~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~~ 136 (350)
....|.||-+... +... ...+...|.+|+|-++. . .+++++-.|.+.+|++.
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 7777877765432 2111 23466789999997743 2 77788889999998883
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.85 E-value=8.9 Score=32.29 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=65.0
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-----cccCCceEEEEeeC
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-----EHKSSVTGLLTISG 75 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~ 75 (350)
|+|+|.+.+-++....+...+||........ . ...++..+. ......+.+.|+..
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g---------~-----------~~~L~vtiP~~~~~~~~~~PTGiVfN~~ 87 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPL---------V-----------QDPLVVVIPAPPPLAAEGTPTGQVFNGS 87 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccC---------C-----------ccceEEEecCCCCCCCCCCccEEEEeCC
Confidence 5789999888888888999999986210000 0 011111111 11234555555421
Q ss_pred C-----------CcEEEEEeCCCcEEEEeCCCCce-----EEEEec--CCc-eeEEEEcC--CCcEEEEEc-cCCeEEEE
Q 045370 76 G-----------TTFFVSSSLDATCKVWDLGSGIL-----IQTQVY--PQA-VTAIAFHP--GEQLLFAGS-IDGRIFVS 133 (350)
Q Consensus 76 ~-----------~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~--~~~-v~~~~~~~--~~~~l~~~~-~dg~i~i~ 133 (350)
. ...++.+++||+|.-|...-+.. ...+.. ... -..+++.. .+.+|+.+. .+++|.+|
T Consensus 88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 1 12367889999999999643322 111221 122 23444443 356666554 57899998
Q ss_pred eCCcc
Q 045370 134 PLKFL 138 (350)
Q Consensus 134 d~~~~ 138 (350)
|-...
T Consensus 168 d~~f~ 172 (336)
T TIGR03118 168 KGSFR 172 (336)
T ss_pred cCccc
Confidence 86543
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.67 E-value=7.3 Score=37.89 Aligned_cols=118 Identities=7% Similarity=0.018 Sum_probs=70.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCce---------eEEEEcC----------------CCcEEEEEccCCeEEE
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAV---------TAIAFHP----------------GEQLLFAGSIDGRIFV 132 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v---------~~~~~~~----------------~~~~l~~~~~dg~i~i 132 (350)
..++.++.++.|.-.|..+|+.+..+.....+ +.+.+.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 45777888899999999999988886543322 2233321 3447888989999999
Q ss_pred EeCCccccccccccccccc--eeeeccCCceEEEE----ecCCeEEEEeC----------CCcEEEEECCCceEEEEec
Q 045370 133 SPLKFLLLEDHFIVGEDQH--SVLKGHNGSITALA----FSASHLISASE----------DKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~----~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~ 195 (350)
.|.++++....+......- ..+......-..+. +..+.++.|+. +|.|+-+|.++|+.+..+.
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 9999887654321111000 00000000000111 12222555542 6889999999999988874
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.50 E-value=7.3 Score=35.17 Aligned_cols=121 Identities=17% Similarity=0.036 Sum_probs=69.9
Q ss_pred ccceeeeccccCCceEEEEeeCCC------cEEEEEeCCCcEEEEeCCC-CceEEEEecCCceeEEEEcC----CCcEEE
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGT------TFFVSSSLDATCKVWDLGS-GILIQTQVYPQAVTAIAFHP----GEQLLF 122 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~------~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~----~~~~l~ 122 (350)
+..+..+..|.+. -+.|.|... ..-+.|-.+..|.-.|.+- |..+.........+--.|+. ...+++
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa 577 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIA 577 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEE
Confidence 4555555555554 234443211 1234566677777777664 32222222222222222332 456999
Q ss_pred EEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370 123 AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT 186 (350)
Q Consensus 123 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~ 186 (350)
+|+..|.|++||.- .......+++-...|..+..+.+| .+-+.....+.+-|++
T Consensus 578 ~as~kGDirLyDRi----------g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 578 AASRKGDIRLYDRI----------GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred EecCCCceeeehhh----------cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 99999999999954 222223566777889999999999 3333335578888875
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=90.47 E-value=11 Score=32.71 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=56.7
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 138 (350)
...+.++.+.+ ++..++. +..|.+.+=..+.|..-.... ....+..+.+.+++..++ ++.+|.+.. ....+
T Consensus 214 ~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G 289 (334)
T PRK13684 214 SRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG 289 (334)
T ss_pred cccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC
Confidence 45677777755 4555444 456766432344443322222 123478889998776555 445676653 22221
Q ss_pred ccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEE
Q 045370 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWD 184 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd 184 (350)
..-. .......-....+.+.+..+. .+..+..|.|--|+
T Consensus 290 ~tW~-------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 290 KTWE-------KDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCCe-------ECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 1100 000001112356777766555 55566678877665
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.11 E-value=0.9 Score=42.44 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQTQ 103 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 103 (350)
+..++++.+.|+++|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 5578999999999999999999996664
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.72 E-value=3.5 Score=31.84 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.7
Q ss_pred ceEEEEecCCe--------EEEEeCCCcEEEEECCC
Q 045370 160 SITALAFSASH--------LISASEDKTVCLWDVTR 187 (350)
Q Consensus 160 ~i~~~~~~~~~--------l~s~~~dg~v~iwd~~~ 187 (350)
.+..++|||.| |++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999965 88888999999997653
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.59 E-value=3.9 Score=36.42 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCcc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTR 26 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~ 26 (350)
|..+|++++.|+...=|.|.++|+.+
T Consensus 313 i~~sP~~~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 313 ICLSPSGRLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCC
Confidence 46789999888887789999999984
No 439
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.26 E-value=21 Score=34.98 Aligned_cols=76 Identities=16% Similarity=0.044 Sum_probs=50.3
Q ss_pred CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-c--cccccceeee------ccCCceEEEEecCCe--EEEE
Q 045370 106 PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-I--VGEDQHSVLK------GHNGSITALAFSASH--LISA 174 (350)
Q Consensus 106 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~~~~~------~~~~~i~~~~~~~~~--l~s~ 174 (350)
...|.++....-+..++.+..||.|.++|..+.+..... . .....+..+. .+...+..++|||++ ++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356778887778889999999999999999887654333 0 0011111111 111245568899998 7778
Q ss_pred eCCCcEE
Q 045370 175 SEDKTVC 181 (350)
Q Consensus 175 ~~dg~v~ 181 (350)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.84 E-value=11 Score=36.63 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=45.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEecCCcee-------------EEEEcC--CCcEEEEEcc----------CCeEEE
Q 045370 78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVT-------------AIAFHP--GEQLLFAGSI----------DGRIFV 132 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i 132 (350)
..++.++.|+.|.-.|..+|+....+...+.+. .+.-.| .+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 467788889999999999999887765443321 111122 2345666642 688999
Q ss_pred EeCCcccccccc
Q 045370 133 SPLKFLLLEDHF 144 (350)
Q Consensus 133 ~d~~~~~~~~~~ 144 (350)
+|.++++....+
T Consensus 341 ~Da~TGkl~W~~ 352 (764)
T TIGR03074 341 FDVNTGALVWAW 352 (764)
T ss_pred EECCCCcEeeEE
Confidence 999998866543
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=10 Score=34.46 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=41.6
Q ss_pred CCceEEEEeeCCCcEEEEEeCCCcEEEEe---------CCCCceEEE---Ee---------cCCceeEEEEcCCC---cE
Q 045370 65 SSVTGLLTISGGTTFFVSSSLDATCKVWD---------LGSGILIQT---QV---------YPQAVTAIAFHPGE---QL 120 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd---------~~~~~~~~~---~~---------~~~~v~~~~~~~~~---~~ 120 (350)
-.|..+..++ .|..++-.|.+|.+.++= +..|+.... ++ ..-.+..++|||+. .+
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3455565544 667777777788554332 122322211 11 11235667888864 56
Q ss_pred EEEEccCCeEEEEeCCc
Q 045370 121 LFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 121 l~~~~~dg~i~i~d~~~ 137 (350)
+..-+.|..+++||+..
T Consensus 183 L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEEecCcEEEEEecCC
Confidence 77777788888888773
No 442
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.55 E-value=10 Score=32.80 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCC----e-E-EEEeCC----
Q 045370 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS----H-L-ISASED---- 177 (350)
Q Consensus 108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~-l-~s~~~d---- 177 (350)
..+.|+|.|+|+.+++ ...|.|++++ ..+..... ..... ............++++|+ + | ++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~-v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTP-VADLP--EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEE-EEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcce-ecccc--cccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4578999999877665 5599999999 32222110 00000 123344567899999995 3 3 222211
Q ss_pred ----CcEEEEECCCc-------eEE-EEecc---CCCceeEEEEEccCCeEEeeecC
Q 045370 178 ----KTVCLWDVTRR-------VSI-RRFNH---KKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 178 ----g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
..|.-|....+ +.+ ..+.. ....-..|.|.|+|.+.++.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23433433322 112 22222 23345679999999766655543
No 443
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.17 E-value=17 Score=31.88 Aligned_cols=52 Identities=8% Similarity=-0.121 Sum_probs=25.4
Q ss_pred EEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCc-eeEEEE--cCCCcEEE
Q 045370 70 LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA-VTAIAF--HPGEQLLF 122 (350)
Q Consensus 70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-v~~~~~--~~~~~~l~ 122 (350)
...++. ...++-...+..|.--|+.+.+....+..+.. +-...| +.++..++
T Consensus 86 ~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 86 GFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp -EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred eEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEE
Confidence 334454 44444444556888899999876655554333 333445 33555544
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.44 E-value=9.2 Score=27.87 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=68.7
Q ss_pred cEEEEEeCCCcEEEEeCCC--------CceEEEEecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCcccccccc
Q 045370 78 TFFVSSSLDATCKVWDLGS--------GILIQTQVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHF 144 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 144 (350)
..|+.++.-|.|.|++... ...+..+.....|++++--+ ....|+.|+ ...+..||+......
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~--- 86 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL--- 86 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence 4577777888999998763 33455677788888887654 234677776 567889999843211
Q ss_pred ccccccceeeeccCCceEEEEec-----CCeEEEEeCCCcEEEEECCCceEEEEe
Q 045370 145 IVGEDQHSVLKGHNGSITALAFS-----ASHLISASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~ 194 (350)
-.+.-...++++.+- +..++..+.+..|.-||....+...+.
T Consensus 87 --------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 87 --------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred --------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 112234667777663 222666666778888888776666554
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.21 E-value=1.6 Score=40.98 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=60.9
Q ss_pred ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEE
Q 045370 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLW 183 (350)
Q Consensus 104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iw 183 (350)
.....++++.-+|.+..++.+..||.|.+|+........ +-.-..+-..+.|...||++...|..+.-|
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-----------i~~~~~p~~nlv~tnhgl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-----------ICEEAKPKENLVFTNHGLVTATSDRRALAW 80 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-----------hhhhcCCccceeeeccceEEEeccchhhee
Confidence 344567888999999999999999999999976432211 111223445577777788888888888888
Q ss_pred ECCCceEEEEecc---CCCceeEEEEEccCCeE
Q 045370 184 DVTRRVSIRRFNH---KKGVVTNLVVIRQSSLL 213 (350)
Q Consensus 184 d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l 213 (350)
-- .|-....+.. .....+++...|..+-+
T Consensus 81 ~~-dgvvqqqfdyndqsekefss~~cdptaqnv 112 (1636)
T KOG3616|consen 81 KE-DGVVQQQFDYNDQSEKEFSSILCDPTAQNV 112 (1636)
T ss_pred ec-cCcchhhccccchhhhhccceecCchhhhh
Confidence 43 3433333321 11234444455554433
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=87.19 E-value=19 Score=31.25 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEE-EeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKV-WDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~v-wd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 140 (350)
...+.++.+.+ ++.+++++ ..|.+.. +|-. ++.-... .....++++.+.++++.++++. .|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCc
Confidence 45677777755 55555444 4564432 2222 2212222 2346789999999988777654 57664322222111
Q ss_pred ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEe---ccCCCceeEEEEEccCCeEEee
Q 045370 141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRF---NHKKGVVTNLVVIRQSSLLSEV 216 (350)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~ 216 (350)
-.. ... ........+..+.+.|++ ++.++.+|.+.. ....++.-... ..-......+.|..+++.++ .
T Consensus 248 W~~---~~~---~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 248 WSK---PII---PEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred ccc---ccC---CccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 000 000 000112357788898887 777777886653 33433332222 12223577888888888777 4
Q ss_pred ecCcccc
Q 045370 217 SNCQRKL 223 (350)
Q Consensus 217 ~~~~~~~ 223 (350)
+..+.++
T Consensus 320 G~~G~il 326 (334)
T PRK13684 320 GQRGVLL 326 (334)
T ss_pred CCCceEE
Confidence 4444444
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.08 E-value=8.1 Score=29.79 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCceEEEEeeCC-----CcEEEEEeCCCcEEEEeCCC
Q 045370 65 SSVTGLLTISGG-----TTFFVSSSLDATCKVWDLGS 96 (350)
Q Consensus 65 ~~v~~~~~~~~~-----~~~l~s~~~d~~v~vwd~~~ 96 (350)
..+..++|+|.+ +-+|++...++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999998743 35688888999999998764
No 448
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.84 E-value=34 Score=33.81 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=75.6
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE 141 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 141 (350)
-.+.+.++..+ ++.++ ++-...|++|++.+++.++. ..+..++..+...-.|..+++|+.-+.+.+...+..+-.
T Consensus 828 v~Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 828 VKGAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred eccceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCc
Confidence 34566666543 44444 44568899999999865554 567788888888889999999998888877655532100
Q ss_pred cccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT 186 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~ 186 (350)
-....-..++.+++++.+-.+. ++.+-.+|.+.+-...
T Consensus 904 -------f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 904 -------FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred -------eEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 0000112466788888877666 7777778887776543
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.44 E-value=24 Score=31.64 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 137 (350)
.++++.=+-||.+.+++-+.....+.++.---...++|.+.-..|++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 3678888999999999987655444444333344578889889999999998998887643
No 450
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.42 E-value=18 Score=30.32 Aligned_cols=142 Identities=9% Similarity=0.043 Sum_probs=90.1
Q ss_pred CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE 141 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 141 (350)
+-+..+.+ .+++...+.++.-+++.|+.+...... +...+-..++.. .|++..++..|.-..++|+......
T Consensus 87 ~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 34455555 245677777888899999988654443 333344444444 6889999987766778888754321
Q ss_pred cccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 142 DHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
............-..++.+.+.-..+..|+-+.+-|+.+.. .+.... ....+.++..+++.-+++....
T Consensus 162 -------~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 162 -------QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred -------eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc
Confidence 11113333344446788888886666778889999987643 344443 2336788888888777775554
Q ss_pred C
Q 045370 219 C 219 (350)
Q Consensus 219 ~ 219 (350)
.
T Consensus 234 g 234 (370)
T COG5276 234 G 234 (370)
T ss_pred c
Confidence 4
No 451
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.28 E-value=18 Score=30.00 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=70.3
Q ss_pred ceEEEEeeCCCcEEEEEeCCC--cEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370 67 VTGLLTISGGTTFFVSSSLDA--TCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED 142 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 142 (350)
..++.|.. ++.++-+.+.-| .|+.+|+.+++.......+.. -..++.. +++.....=.++...+||..+.+...
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 34566644 567777777776 799999999998877664443 3334443 23344445568999999998654332
Q ss_pred ccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370 143 HFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
.+. ..+.-..++.....|+.+.....|+++|..+.+...++.
T Consensus 125 ----------~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 125 ----------TFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ----------EEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ----------EEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 221 123345555444447767667799999998877766654
No 452
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.13 E-value=19 Score=30.27 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEc------cCCeEEEEeCCccccccccccccccceeeeccC
Q 045370 86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGS------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN 158 (350)
Q Consensus 86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (350)
-..|++||+.+.+....- ...+.|+++.|..+...++.|. ....+-.||+.+......... .-..-+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~------~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG------SSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCc------ccccCC
Confidence 346999998877655442 3567899999986666777664 355788888875433210000 001124
Q ss_pred CceEEEEecCC---e-EEEEe-C--CCcEEEEECCCceEEEE-eccCCCceeEEEEEcc
Q 045370 159 GSITALAFSAS---H-LISAS-E--DKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQ 209 (350)
Q Consensus 159 ~~i~~~~~~~~---~-l~s~~-~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~ 209 (350)
++|+.+.+... . .+.|. . +..|..||=.....+.. .......|..+.+-|-
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 67777777432 2 33333 2 34577787766666555 2223445666655443
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=33 Score=32.83 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=29.6
Q ss_pred ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC
Q 045370 54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG 97 (350)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 97 (350)
+.++.........+..+-|+. .+.|+....||++.+|++-..
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchh
Confidence 444444444455888888854 345778889999999998743
No 454
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.63 E-value=23 Score=30.77 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCceEEE--EecC-CceeEEEEcCCCcEEEEEcc
Q 045370 87 ATCKVWDLGSGILIQT--QVYP-QAVTAIAFHPGEQLLFAGSI 126 (350)
Q Consensus 87 ~~v~vwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~ 126 (350)
..|.+||..+++.... +... ..-.+++ .-++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence 4688899887765443 2221 1122222 235666666664
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.58 E-value=4.3 Score=22.28 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=24.5
Q ss_pred EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370 171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV 206 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 206 (350)
+++...++.|.++|..+++.+..+... .....++|
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 444456889999999999998888753 33345544
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=27 Score=31.33 Aligned_cols=102 Identities=8% Similarity=0.078 Sum_probs=67.2
Q ss_pred eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--Ee---cCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370 57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QV---YPQAVTAIAFHPGEQLLFAGSIDGRIF 131 (350)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~ 131 (350)
...-....++|.++.|++ ++..+|.--.|.+|.+++....+.... .. ....|...+|..+ .-++..+..| +-
T Consensus 59 iSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e 135 (657)
T KOG2377|consen 59 ISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IE 135 (657)
T ss_pred ceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eE
Confidence 334445667999999966 678889988999999999854333222 12 2234888899865 4455544333 55
Q ss_pred EEeCCccccccccccccccceeeeccCCceEEEEecCCe
Q 045370 132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH 170 (350)
Q Consensus 132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (350)
+|.... ....++..+.|...|+-..|+++.
T Consensus 136 ~y~v~p---------ekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 136 FYQVLP---------EKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred EEEEch---------hhhhhhhhhhcccCccEEEEcccc
Confidence 555442 233444667788888888898887
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.07 E-value=4.3 Score=37.97 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCCcEEEEEccCCeEEEEeCCccc----cccccccccc----cce--------eeeccCCceEEEEecC-----Ce-EEE
Q 045370 116 PGEQLLFAGSIDGRIFVSPLKFLL----LEDHFIVGED----QHS--------VLKGHNGSITALAFSA-----SH-LIS 173 (350)
Q Consensus 116 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~----~~~--------~~~~~~~~i~~~~~~~-----~~-l~s 173 (350)
++...++++..||.+......... .......... ... ........+..++++. +. +++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888889988888776521 0000000000 000 0011123444555544 22 889
Q ss_pred EeCCCcEEEEECCCceEEEEe
Q 045370 174 ASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 174 ~~~dg~v~iwd~~~~~~~~~~ 194 (350)
-+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.75 E-value=25 Score=30.38 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=39.6
Q ss_pred ceEEEEeeCCCcEEEEEeCC------CcEEEEeCCCCceEEEEe----------------cCCceeEEEEcCCCcEEEEE
Q 045370 67 VTGLLTISGGTTFFVSSSLD------ATCKVWDLGSGILIQTQV----------------YPQAVTAIAFHPGEQLLFAG 124 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~ 124 (350)
.-++++ +.++.++++.-.+ ..|..++.. |+....+. ......+++++|+|+.|+++
T Consensus 87 ~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 346666 5677777777666 778888876 55543321 23458899999999977766
Q ss_pred cc
Q 045370 125 SI 126 (350)
Q Consensus 125 ~~ 126 (350)
.+
T Consensus 165 ~E 166 (326)
T PF13449_consen 165 ME 166 (326)
T ss_pred EC
Confidence 43
No 459
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.73 E-value=48 Score=34.13 Aligned_cols=30 Identities=20% Similarity=0.059 Sum_probs=21.7
Q ss_pred cCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370 196 HKKGVVTNLVVIRQSSLLSEVSNCQRKLKK 225 (350)
Q Consensus 196 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 225 (350)
++...+.+++.+|+|...++-.++.++-.+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 355678999999999988866665544433
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.39 E-value=24 Score=29.87 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=74.8
Q ss_pred cCCceEEEEeeCCC----cE-EEEEeCCCcEEEEeCCCCceEEEEec--------------------CCceeEEEEcC--
Q 045370 64 KSSVTGLLTISGGT----TF-FVSSSLDATCKVWDLGSGILIQTQVY--------------------PQAVTAIAFHP-- 116 (350)
Q Consensus 64 ~~~v~~~~~~~~~~----~~-l~s~~~d~~v~vwd~~~~~~~~~~~~--------------------~~~v~~~~~~~-- 116 (350)
...+..+.....++ .+ .++=+..+.|.|+|+.+++..+...+ ...+..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~ 139 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS 139 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence 44566666655332 23 34444456899999998876554321 12355555544
Q ss_pred -CCcEEEEEccCCeEEEEeCCcccccccccccc----ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC--
Q 045370 117 -GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE----DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-- 187 (350)
Q Consensus 117 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-- 187 (350)
++++|+-..-.+ -++|.+.+..+........ ..+..+-........++++++| +++--..+.|..|+..+
T Consensus 140 ~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 140 PDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPY 218 (287)
T ss_dssp TTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB
T ss_pred CCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCc
Confidence 444554443222 1233333222221111111 1112221122456778888888 55666788999999886
Q ss_pred ----ceEEEEeccCCCceeEEEEEc--cCCeEEee
Q 045370 188 ----RVSIRRFNHKKGVVTNLVVIR--QSSLLSEV 216 (350)
Q Consensus 188 ----~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~ 216 (350)
.+.+..-...-..+.++.+.+ +|.+.+.+
T Consensus 219 ~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 219 TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 122322222245778899998 77666544
No 461
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.38 E-value=26 Score=30.19 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=35.0
Q ss_pred CCcEEEEEeC-----CCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCC----eEEEEeCCccc
Q 045370 76 GTTFFVSSSL-----DATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDG----RIFVSPLKFLL 139 (350)
Q Consensus 76 ~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 139 (350)
++.+++.|+. ...+..||+.+.+....- .........+...+++.++.|+.++ .+..||..+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4566667664 235788888877654432 2111222222333567777776653 34577777543
No 462
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.02 E-value=31 Score=30.88 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=68.4
Q ss_pred ceEEEEeeCCCcEEEE-EeCCC---cEEEEeCCCC-----ceEEEEecCCceeEEEEcCCCcEEEEEc---cCCeEEEEe
Q 045370 67 VTGLLTISGGTTFFVS-SSLDA---TCKVWDLGSG-----ILIQTQVYPQAVTAIAFHPGEQLLFAGS---IDGRIFVSP 134 (350)
Q Consensus 67 v~~~~~~~~~~~~l~s-~~~d~---~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d 134 (350)
...+..+ .++++++. ..... .+.+.++..+ ...........+....-+..+.+++... .++.|...+
T Consensus 229 ~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 229 FVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEec
Confidence 3455554 45665554 33333 4777788764 3333344444444333333444444433 246777777
Q ss_pred CCccccccccccccccceeeeccCC--ceEEEEecCCe-EEEEeCCC--cEEEEECCCceEEEEec-cCCCceeEEEEEc
Q 045370 135 LKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH-LISASEDK--TVCLWDVTRRVSIRRFN-HKKGVVTNLVVIR 208 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~-l~s~~~dg--~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~ 208 (350)
+....... ....+..+.. .+..+....+. ++....++ .|+++|+..+.....+. ...+.|..+...+
T Consensus 308 l~~~~~~~-------~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~ 380 (414)
T PF02897_consen 308 LADPSPAE-------WWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDF 380 (414)
T ss_dssp TTSTSGGG-------EEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-T
T ss_pred cccccccc-------ceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCC
Confidence 77543211 0113334444 57777777777 55555554 68899998334444433 2344556655555
Q ss_pred cCCeEE
Q 045370 209 QSSLLS 214 (350)
Q Consensus 209 ~~~~l~ 214 (350)
++..+.
T Consensus 381 ~~~~~~ 386 (414)
T PF02897_consen 381 DSDELR 386 (414)
T ss_dssp T-SEEE
T ss_pred CCCEEE
Confidence 554333
No 463
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.51 E-value=37 Score=31.27 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCc----eeEEEEcCCCcEEEEEcc-------------CCeEEEEeCCc
Q 045370 75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA----VTAIAFHPGEQLLFAGSI-------------DGRIFVSPLKF 137 (350)
Q Consensus 75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~ 137 (350)
+++.+++..+ ..+..+|+. |+.+.....+.. -..+...|+|++|+.+.. .-.|..+| .+
T Consensus 157 ~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~t 232 (477)
T PF05935_consen 157 PNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PT 232 (477)
T ss_dssp TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TT
T ss_pred CCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CC
Confidence 3566554433 788888986 666666554442 367788899998887771 11233334 33
Q ss_pred cccccccccccc--cce----------eee---ccC--CceEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370 138 LLLEDHFIVGED--QHS----------VLK---GHN--GSITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFNHK 197 (350)
Q Consensus 138 ~~~~~~~~~~~~--~~~----------~~~---~~~--~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~ 197 (350)
++....+..... +.+ ... ... --++++.+.+ +. ++|+-.-..|...|.++++....+..+
T Consensus 233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 332221111100 000 000 011 2478899988 33 455445558999999999998888654
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.45 E-value=13 Score=32.20 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.3
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMT 25 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~ 25 (350)
|+|.|||++|++ ...|.|++++..
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~~~ 30 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVDKD 30 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEETT
T ss_pred EEEeCCCcEEEE-eCCceEEEEeCC
Confidence 689999987775 559999999833
No 465
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.35 E-value=31 Score=30.37 Aligned_cols=119 Identities=11% Similarity=0.021 Sum_probs=58.7
Q ss_pred EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-----eEEEEeCCccccccccccccccceeeecc--CCce
Q 045370 89 CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-----RIFVSPLKFLLLEDHFIVGEDQHSVLKGH--NGSI 161 (350)
Q Consensus 89 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~i 161 (350)
|.--|+.+|+....+.....+..+.|+|....+++=+..| .-++|-++... .....+..+ ...+
T Consensus 170 i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------SNVKKVHRRMEGESV 240 (386)
T ss_dssp EEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------EESS---TTEEE
T ss_pred EEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------CcceeeecCCCCccc
Confidence 5566788888877788888899999999666555544332 12556555321 111122222 2233
Q ss_pred EEEEecCCe----EEE---EeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370 162 TALAFSASH----LIS---ASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN 218 (350)
Q Consensus 162 ~~~~~~~~~----l~s---~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 218 (350)
.-=-|.|+| +.. ++.+..|.-+|+.++........ .+-..+--+++|++++.-+.
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCC
Confidence 334588888 212 22344677788888765432221 23344556788998884333
No 466
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=83.02 E-value=13 Score=30.70 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=50.6
Q ss_pred ccCCceEEEEeeCC------CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC----CCcEEEEEccCCeEEE
Q 045370 63 HKSSVTGLLTISGG------TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP----GEQLLFAGSIDGRIFV 132 (350)
Q Consensus 63 h~~~v~~~~~~~~~------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i 132 (350)
+...|+|++....+ -..++.|.++|.|.+.|......+.....++....++..- -.-.|++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 45567777665422 2579999999999999999888888777665544444332 2346788889999876
Q ss_pred E
Q 045370 133 S 133 (350)
Q Consensus 133 ~ 133 (350)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.45 E-value=27 Score=29.06 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCceeEEEEcCCCcEEEEEcc---------CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE
Q 045370 106 PQAVTAIAFHPGEQLLFAGSI---------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA 174 (350)
Q Consensus 106 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~ 174 (350)
........|++.|++-+++.. .+.|.+|+.. .....+.|+..|+| .++.
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------------CCCCCcceEECCCCcEEEEe
Confidence 356788999999998888753 1334444433 22456778889998 4444
Q ss_pred eCCCcEEEEECCCceEEEEec---cCCCceeEEEEEccCCeEEeeecC
Q 045370 175 SEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVIRQSSLLSEVSNC 219 (350)
Q Consensus 175 ~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~~ 219 (350)
-.+..|-..|..++.. ..+. ........+--+|.|+.-++....
T Consensus 207 lagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~ 253 (353)
T COG4257 207 LAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGT 253 (353)
T ss_pred ccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCC
Confidence 4566777777776532 1221 212334455556667666654443
No 468
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.11 E-value=37 Score=29.88 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=64.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCC---ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK 155 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (350)
.+..+..+|.|.-.|..++..+....... .+..-.+..+|+ ++.++.+|.++.+|.+++..........
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~------- 141 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG------- 141 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-------
Confidence 35666789989999999988765543321 222222222554 7888889989999987655443222221
Q ss_pred ccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370 156 GHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 156 ~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
. ..+..-....++ +..++.++.+.-.|..+++......
T Consensus 142 -~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 142 -S-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred -C-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence 0 111222233344 5555578889988988888877654
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.98 E-value=23 Score=29.81 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred ccccCCceEEEEeeCCCcEEEEEe------CCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcC-CCcEEE-EEc-c
Q 045370 61 LEHKSSVTGLLTISGGTTFFVSSS------LDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHP-GEQLLF-AGS-I 126 (350)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~-~~~-~ 126 (350)
.+-.+.|.++.|.. +..+++.|. ....+..||..+......-. .++++..+.+.. ++..++ .|. .
T Consensus 33 ~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~ 111 (281)
T PF12768_consen 33 NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA 111 (281)
T ss_pred CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceec
Confidence 34567899999974 456666653 35578899998776533322 357788887754 343344 332 2
Q ss_pred --CCeEEEEeCCccc
Q 045370 127 --DGRIFVSPLKFLL 139 (350)
Q Consensus 127 --dg~i~i~d~~~~~ 139 (350)
+..|..||=..+.
T Consensus 112 ~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 112 NGSTFLMKYDGSSWS 126 (281)
T ss_pred CCCceEEEEcCCceE
Confidence 3456667655443
No 470
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.43 E-value=9.1 Score=25.72 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=32.0
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc
Q 045370 81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125 (350)
Q Consensus 81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 125 (350)
+.+..+|.+.-||..+++....+..-.-.+.|++++++..++.+-
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345667889999999998766665555678999999999777653
No 471
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.41 E-value=41 Score=29.75 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=19.6
Q ss_pred cEEEEeCCCCceEEEEecC---CceeEEEEcCCCcEEEEEcc
Q 045370 88 TCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSI 126 (350)
Q Consensus 88 ~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~ 126 (350)
.|.+||..+++....-..+ ....++... +++.++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 5888998887655432211 112233332 4555556653
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.53 E-value=4.8 Score=20.73 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.7
Q ss_pred EEEEeCCCcEEEEECCCceEEEEe
Q 045370 171 LISASEDKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~~~~~~~ 194 (350)
++.++.+|.++.+|..+|+.+.++
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 778888999999999999887654
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.57 E-value=59 Score=32.04 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC------ceEEEEecCC----------ceeEEEEcCCCcEEEEEccCC
Q 045370 65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG------ILIQTQVYPQ----------AVTAIAFHPGEQLLFAGSIDG 128 (350)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg 128 (350)
.+..+++|+|.+...||.....|...||++... .........+ .-..+.|.++.+.|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 466788999988889999999999999999211 1111111112 233788888888888877 45
Q ss_pred eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCC
Q 045370 129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTR 187 (350)
Q Consensus 129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~ 187 (350)
.+.++|+........ .........|..+.-+|.. ++-. ...|...|+..
T Consensus 225 ~l~~~d~~~~~~~~~--------l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEY--------LVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccch--------hccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 678889885433211 1122344567777777762 2222 23555556654
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=78.20 E-value=65 Score=30.77 Aligned_cols=170 Identities=12% Similarity=0.184 Sum_probs=81.6
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF 80 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 80 (350)
|.|.++++.+++...+|.|.+||......+.... .. ..... . ..+..-|..... ..+..++
T Consensus 135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~-------------l~---~~~~~-~-v~ys~fv~~~~~-~~~~~~l 195 (670)
T PF10395_consen 135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ-------------LK---LKSSI-N-VSYSKFVNDFEL-ENGKDLL 195 (670)
T ss_pred EEEecCCCEEEEEEcCCcEEEEeccccccccccc-------------cc---ccccc-c-eehhhhhccccc-ccCCceE
Confidence 3577889999999999999999993211100000 00 00000 0 001111211111 1123444
Q ss_pred EEEeC-C---CcEEEEeC--CCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370 81 VSSSL-D---ATCKVWDL--GSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 81 ~s~~~-d---~~v~vwd~--~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
++.+. + -..+++.+ ........ ..+........|+-+...|+.- .++.|.+|++.............
T Consensus 196 l~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~--- 271 (670)
T PF10395_consen 196 LTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPS--- 271 (670)
T ss_pred EEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEech---
Confidence 44443 2 24577777 22222222 1222233344444433333333 57899999998765443322210
Q ss_pred eeeecc-CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370 152 SVLKGH-NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN 195 (350)
Q Consensus 152 ~~~~~~-~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 195 (350)
.+... ...|.-...+++.++-+. ++.|++.|+.-...+.++.
T Consensus 272 -ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 272 -IIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -hhccccccceEeecCCCCeEEEEc-CCEEEEEeehhhhhhhhhh
Confidence 11111 233444456677733333 5689999987666655554
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.79 E-value=5.5 Score=21.61 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.7
Q ss_pred EEEEeCCCcEEEEECCCceEEEEecc
Q 045370 171 LISASEDKTVCLWDVTRRVSIRRFNH 196 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~~~~~~~~~ 196 (350)
++.++.+|.|+-.|.++|+.+..+..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 56678999999999999999998863
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.33 E-value=47 Score=28.72 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=84.5
Q ss_pred ccCCceEEEEeeCCCcEEEEEeCCCc------EEEEeCCC--C--ceEEE-----Eec-CC--------ceeEEEEcCCC
Q 045370 63 HKSSVTGLLTISGGTTFFVSSSLDAT------CKVWDLGS--G--ILIQT-----QVY-PQ--------AVTAIAFHPGE 118 (350)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~s~~~d~~------v~vwd~~~--~--~~~~~-----~~~-~~--------~v~~~~~~~~~ 118 (350)
.-+.+.++.+.+.++ .+++.+.+|. +..+++.. + ..+.. +.. .+ ...+|++.+++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 345677888876444 4566677777 55555443 1 11111 111 11 34478887788
Q ss_pred cEEEEEccC------CeEEEEeCCccccccccccccccce-----eeeccCCceEEEEecCCe--EEEEeCC-----C--
Q 045370 119 QLLFAGSID------GRIFVSPLKFLLLEDHFIVGEDQHS-----VLKGHNGSITALAFSASH--LISASED-----K-- 178 (350)
Q Consensus 119 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~--l~s~~~d-----g-- 178 (350)
.++++.-.+ ..|..++.. +.............. .-.......-+|+++|++ |+++.+. +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 777777667 788888866 444332211111000 112345678899999997 5555432 2
Q ss_pred c-------EEEE--ECCC-ceE----EEEecc-----CCCceeEEEEEccCCeEEe
Q 045370 179 T-------VCLW--DVTR-RVS----IRRFNH-----KKGVVTNLVVIRQSSLLSE 215 (350)
Q Consensus 179 ~-------v~iw--d~~~-~~~----~~~~~~-----~~~~v~~l~~~~~~~~l~~ 215 (350)
. ++++ |..+ +.. .+.+.. ....++.+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4444 5444 322 333332 3467899999999998774
No 477
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.03 E-value=56 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.3
Q ss_pred CceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370 159 GSITALAFSASH--LISASEDKTVCLWDVTR 187 (350)
Q Consensus 159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~ 187 (350)
..|..++..+.. +++...+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348889888776 99999999999999974
No 478
>PLN02193 nitrile-specifier protein
Probab=76.92 E-value=61 Score=29.77 Aligned_cols=64 Identities=5% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCC-----cEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccC----CeEEEEeCCcccc
Q 045370 76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSID----GRIFVSPLKFLLL 140 (350)
Q Consensus 76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 140 (350)
++.+++.|+.++ .+..||+.+.+...... ....-..++. -+++.++.++.+ ..+.+||+.+...
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 456777777653 46778887765433211 0011112222 256666666654 4688888876543
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.55 E-value=82 Score=31.10 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370 1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF 79 (350)
Q Consensus 1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 79 (350)
++|+|. .+.||.....|.-.||++........ ..+.+.....+..... ....+.-..+.|.+ +.+.
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~-----------~~~~~~~~~~gsi~~d-~~e~s~w~rI~W~~-~~~~ 217 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS-----------SNLRLSRNISGSIIFD-PEELSNWKRILWVS-DSNR 217 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCC-----------cceeeccCCCccccCC-CcccCcceeeEecC-CCCE
Confidence 578884 46899999999999999931111000 0000000000111000 11124455777855 4445
Q ss_pred EEEEeCCCcEEEEeCCCCceEE---EEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCc
Q 045370 80 FVSSSLDATCKVWDLGSGILIQ---TQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKF 137 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 137 (350)
|+.++ ...+.++|+.+..... .......|..+.-+|.. .+++.-+ ...|...++..
T Consensus 218 lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 218 LLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred EEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 65655 4568999999876533 22345678888888862 2333333 35677777765
No 480
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.19 E-value=66 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.2
Q ss_pred CeecCCCCEEEEEeCCCcEEEEeCc
Q 045370 1 MVFSDDGFLLISGSDDGMICVWSMT 25 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg~i~vwd~~ 25 (350)
|+|.|||++|++--..|.|++++-.
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCC
Confidence 5799999888877657999998754
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.16 E-value=66 Score=29.31 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=36.1
Q ss_pred CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCC
Q 045370 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS 169 (350)
Q Consensus 107 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (350)
...+.|+|.|++++|++--..|.|++++.......... ....+ ...........|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~--~l~~v-~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF--TLPEI-VNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee--cCCce-eccCCCCceeeEEECCC
Confidence 45688999999977766544699999876543211100 00000 11113577899999987
No 482
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.13 E-value=7.3 Score=26.19 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=35.1
Q ss_pred EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee-cCccccccc
Q 045370 171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS-NCQRKLKKD 226 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~~~~~~~~~ 226 (350)
++.+..+|.+.-||..+++....+.+ -.....+++++|+.+++.+- ...++++.|
T Consensus 30 ~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred eecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 45566788999999999876544443 23568999999999776443 334555554
No 483
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.81 E-value=63 Score=28.91 Aligned_cols=108 Identities=7% Similarity=0.042 Sum_probs=58.5
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEec---CCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQVY---PQAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 135 (350)
...+..+.+.+ ++.+++++ .+|.+ +|....+. ....... ...+..+.|.+++..+++| .+|.+....-
T Consensus 280 ~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D 355 (398)
T PLN00033 280 ARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD 355 (398)
T ss_pred ccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC
Confidence 45677787754 55655444 56654 44444443 1222222 2358889998777666555 4676665432
Q ss_pred CccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEE
Q 045370 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLW 183 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iw 183 (350)
. ++.-. .......-....+.+.|.+++ ....+.+|.|.-|
T Consensus 356 ~-G~tW~-------~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 356 G-GKSWK-------RDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred C-Cccee-------EccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 2 11100 000112234567889987765 6666678876554
No 484
>PLN02153 epithiospecifier protein
Probab=74.69 E-value=57 Score=28.35 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=16.6
Q ss_pred CCcEEEEEeCC-----------CcEEEEeCCCCceEE
Q 045370 76 GTTFFVSSSLD-----------ATCKVWDLGSGILIQ 101 (350)
Q Consensus 76 ~~~~l~s~~~d-----------~~v~vwd~~~~~~~~ 101 (350)
++.+++.|+.+ ..|.+||+.+.+...
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence 45667777754 247788888765443
No 485
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.61 E-value=9 Score=19.12 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.6
Q ss_pred CceEEEEecCCeEEEEeCCCcEEEE
Q 045370 159 GSITALAFSASHLISASEDKTVCLW 183 (350)
Q Consensus 159 ~~i~~~~~~~~~l~s~~~dg~v~iw 183 (350)
..|.+++..+..++.+..-+.+|+|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 3578888888888888888899987
No 486
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.40 E-value=12 Score=20.28 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=23.2
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCC
Q 045370 80 FVSSSLDATCKVWDLGSGILIQTQVYPQ 107 (350)
Q Consensus 80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 107 (350)
++.++.||.|.-.|..+|+.+..+....
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 5566899999999999999998876544
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.12 E-value=67 Score=28.44 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=74.7
Q ss_pred CceEEEEee--CCC-cEEEEEeCCCcEEEEeCC---CC----ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370 66 SVTGLLTIS--GGT-TFFVSSSLDATCKVWDLG---SG----ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL 135 (350)
Q Consensus 66 ~v~~~~~~~--~~~-~~l~s~~~d~~v~vwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 135 (350)
.+..+|... .++ -+++....+|.+..|.+. .+ +.++.+.....+..|..+.....|+.+-++--|+-|+.
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEec
Confidence 456666543 233 456677889988888764 33 35667888889999999998899999999988888887
Q ss_pred Cccccccccccccccceeee--ccCCceEEEEec--CC--e--EEEEeCCCcEEEEECCC-ceEEEEe
Q 045370 136 KFLLLEDHFIVGEDQHSVLK--GHNGSITALAFS--AS--H--LISASEDKTVCLWDVTR-RVSIRRF 194 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~--~--l~s~~~dg~v~iwd~~~-~~~~~~~ 194 (350)
+....... ..+.... .....|-.|++. ++ + ++|.-.+++..|||... ...+..|
T Consensus 237 ep~~~~~~-----~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 237 EPEGGNDR-----TLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp SCCC-S-------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CCCCCCcc-----eeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 63321111 1111111 133566677764 33 3 44444677899999875 3444444
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.96 E-value=67 Score=28.41 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=82.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC----CCcE--EEEEcc-C---CeEEEEeCCc--cccccc
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP----GEQL--LFAGSI-D---GRIFVSPLKF--LLLEDH 143 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~~-d---g~i~i~d~~~--~~~~~~ 143 (350)
...+++....++-+.+||+. |+.+..+.. +.++.+..-. +|+. |++++. + ..|.+|.+.. +.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~- 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD- 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE-
Confidence 34678888889999999998 555555542 3334333321 3432 444442 2 4689997752 11110
Q ss_pred cccccccceeeeccCCceEEEEe--cC-Ce---EEEEeCCCcEEEEECC---Cc----eEEEEeccCCCceeEEEEEccC
Q 045370 144 FIVGEDQHSVLKGHNGSITALAF--SA-SH---LISASEDKTVCLWDVT---RR----VSIRRFNHKKGVVTNLVVIRQS 210 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~--~~-~~---l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~~v~~l~~~~~~ 210 (350)
... ....+......++.+++ +| ++ .+....+|.+..|-+. .+ +.+++|.. .+.+-.|+.....
T Consensus 144 --v~~-~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 144 --VTD-PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp ---CB-TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred --cCC-CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 000 00011112234666765 33 34 6667778988888664 23 46777764 4578899999988
Q ss_pred CeEEeeecCccccccc
Q 045370 211 SLLSEVSNCQRKLKKD 226 (350)
Q Consensus 211 ~~l~~~~~~~~~~~~~ 226 (350)
..|+.+-.+..+|+..
T Consensus 220 g~LYvgEE~~GIW~y~ 235 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYD 235 (381)
T ss_dssp TEEEEEETTTEEEEEE
T ss_pred CCEEEecCccEEEEEe
Confidence 8999898888899876
No 489
>PRK10115 protease 2; Provisional
Probab=70.93 E-value=1.1e+02 Score=29.87 Aligned_cols=183 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred CeecCCCCEEEEEeCCC-----cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370 1 MVFSDDGFLLISGSDDG-----MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG 75 (350)
Q Consensus 1 i~~s~dg~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 75 (350)
+.|||||++|+.+...+ .|++.|+. .+..+........ ..++|.+.
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------------------------tg~~l~~~i~~~~--~~~~w~~D 182 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLE---------------------------TGNWYPELLDNVE--PSFVWAND 182 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECC---------------------------CCCCCCccccCcc--eEEEEeeC
Q ss_pred CCcEEEEEeCCC-----cEEEEeCCCC----ceEEEEecCCceeEEEEcCCCcEEEEEccCC---eEEEEeCCccccccc
Q 045370 76 GTTFFVSSSLDA-----TCKVWDLGSG----ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG---RIFVSPLKFLLLEDH 143 (350)
Q Consensus 76 ~~~~l~s~~~d~-----~v~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~ 143 (350)
+..++++...++ .|..+++.++ .++..-........+..+.++.+++..+..+ .+.+++....
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~----- 257 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELA----- 257 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCC-----
Q ss_pred cccccccceeeeccCCceEEEEecCCe--EEE--EeCCCcEEEEECC-CceEEEEeccCCC-ceeEEEEEccCCeEEeee
Q 045370 144 FIVGEDQHSVLKGHNGSITALAFSASH--LIS--ASEDKTVCLWDVT-RRVSIRRFNHKKG-VVTNLVVIRQSSLLSEVS 217 (350)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s--~~~dg~v~iwd~~-~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~ 217 (350)
.......+.........+.-..+. +.+ +.....|...++. .++....+..... .|..+.+. .+.++++..
T Consensus 258 ---~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 258 ---DAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred ---CCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEE
Q ss_pred cCcc
Q 045370 218 NCQR 221 (350)
Q Consensus 218 ~~~~ 221 (350)
.++.
T Consensus 334 ~~g~ 337 (686)
T PRK10115 334 QRGL 337 (686)
T ss_pred eCCE
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=69.76 E-value=71 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 125 (350)
+.+.++-+..|.|..+|.++|+.......++....++|. |.+++++-
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 344555566677777777777766666667778888887 77777664
No 491
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=69.62 E-value=16 Score=19.89 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCcEEEEEccCCeEEEEeCC
Q 045370 117 GEQLLFAGSIDGRIFVSPLK 136 (350)
Q Consensus 117 ~~~~l~~~~~dg~i~i~d~~ 136 (350)
.+..++.++.||.++.+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46688889999999999875
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.80 E-value=86 Score=27.60 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
++. ++.++.++.+..+|..+|+.+........ +..-.+- ....++.++.+|.+...|..++........... ..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~ 186 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAP--LS 186 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCc--cc
Confidence 444 77888899999999988998888775551 1111111 233444444678888887776654322111100 01
Q ss_pred eeccCCceEEEEecCCe-EEEEeC--CCcEEEEECCCceEEEEe
Q 045370 154 LKGHNGSITALAFSASH-LISASE--DKTVCLWDVTRRVSIRRF 194 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~-l~s~~~--dg~v~iwd~~~~~~~~~~ 194 (350)
......++ ..++ ++.+.. ++.+.-.|..+|......
T Consensus 187 ~~~~~~~~-----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 187 LSIYGSPA-----IASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cccccCce-----eecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 11111111 2223 555555 566777788888777663
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=67.65 E-value=17 Score=34.99 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=60.3
Q ss_pred cCCceEEEEeeCCCcEEEEEeCCCcEEE--------EeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370 64 KSSVTGLLTISGGTTFFVSSSLDATCKV--------WDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP 134 (350)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~v--------wd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 134 (350)
...+.++.+.+. -+..|.-||++-. ||.. +... .....++.+.++.. -++-++.+|.|.++.
T Consensus 581 ~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~e---p~~~~~~g~lPvrsla~~e---d~~was~gG~V~vi~ 651 (925)
T KOG3522|consen 581 HESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGE---PNISIPTGSLPVRSLAFQE---DFVWASEGGCVHVIP 651 (925)
T ss_pred hhhhhhhhcccc---ccccCccCCccccccCCCCCCCCCC---CccccccCCccccchhhhh---ceeeeecCCceEEEe
Confidence 345555555432 1455555666544 4433 1111 22345677776643 345566799999999
Q ss_pred CCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCC
Q 045370 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTR 187 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~ 187 (350)
..+..... .......|...|+++.+..++ .++-.....+++++..+
T Consensus 652 ~tt~~~~~-------~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 652 STTFIRSW-------DLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred chhccccc-------hhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 88643322 112333466789999999998 33333333566666554
No 494
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=67.51 E-value=36 Score=33.39 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=48.7
Q ss_pred CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc--------------ccceeeeccCCceEEEEecCCe--
Q 045370 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE--------------DQHSVLKGHNGSITALAFSASH-- 170 (350)
Q Consensus 107 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~-- 170 (350)
-.|.|+.-+.+|+.+++|-.| +.+|.+........+.... .....+.-|...|..++.....
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg~ 259 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRGL 259 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccccc
Confidence 468888888889999998877 7778775433222110000 0011223355677777777654
Q ss_pred EEEEeCCCcEEEEECCCc
Q 045370 171 LISASEDKTVCLWDVTRR 188 (350)
Q Consensus 171 l~s~~~dg~v~iwd~~~~ 188 (350)
|.+-+....|+-|.+...
T Consensus 260 ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 260 LYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred eeeecccceeeeEeeecc
Confidence 666677777777776543
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.30 E-value=71 Score=28.81 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=45.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370 77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL 139 (350)
Q Consensus 77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 139 (350)
.+-+++-+..|++.++.....+.+.....-..+..++++|++.++++-. .|.++++.+++..
T Consensus 328 rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 328 RKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred cceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 3557888889999888766555444434445678899999999988754 5788998887644
No 496
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.72 E-value=65 Score=25.77 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCC--cEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccc
Q 045370 76 GTTFFVSSSLDA--TCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQH 151 (350)
Q Consensus 76 ~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~ 151 (350)
+++++.+.+.-| .|++||+.+|+.+.+.... ..+..=-...-+.+++.- -.+|.-..+|.++.+....+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~------ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS------ 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc------
Confidence 456676665544 5899999999988875533 222222222234444443 357888999988765443221
Q ss_pred eeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCc
Q 045370 152 SVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRR 188 (350)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~ 188 (350)
..+.-..++.....|+.++...+++.-|..+.
T Consensus 129 -----y~GeGWgLt~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 129 -----YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred -----cCCcceeeecCCcceEeeCCceEEEecCHHHh
Confidence 12333444444444666655666777776553
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=66.65 E-value=14 Score=35.61 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=81.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEE---e--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370 79 FFVSSSLDATCKVWDLGSGILIQTQ---V--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV 153 (350)
Q Consensus 79 ~l~s~~~d~~v~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 153 (350)
.+..|+.++.+.++.-..+...... . ....+.++.+++ ..+..|.-||++-.|--...... ..++...
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss--~Slgagl~dgt~a~y~rap~gSw-----d~ep~~~ 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS--GSLGAGLIDGTLAVYGRAPSGSW-----DGEPNIS 621 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc--cccccCccCCccccccCCCCCCC-----CCCCccc
Confidence 4678889999999886633322221 1 233455555543 34445555666555432211110 1112223
Q ss_pred eeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEecc---CCCceeEEEEEccCCeEEeeecCc
Q 045370 154 LKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNH---KKGVVTNLVVIRQSSLLSEVSNCQ 220 (350)
Q Consensus 154 ~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~~~ 220 (350)
+.....+|...++..+ ++.++.+|.|.++...+......... |...|+++....++-+++.++++.
T Consensus 622 ~~~g~lPvrsla~~ed-~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~ 690 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED-FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE 690 (925)
T ss_pred cccCCccccchhhhhc-eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE
Confidence 3344567777777666 55577799999999988766666543 456899999998888888777763
No 498
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=66.17 E-value=84 Score=26.85 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=41.4
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccc
Q 045370 78 TFFVSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLL 139 (350)
Q Consensus 78 ~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 139 (350)
.+++.|..+|. .+.++... .....+-....|+++...+..+.|++-+ ....++.+++....
T Consensus 14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 14 KWLLVGTEEGL-YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred cEEEEEeCCce-EEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 57889998884 44555542 2333344566899999998877776655 33459999996544
No 499
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=66.06 E-value=1e+02 Score=27.81 Aligned_cols=143 Identities=7% Similarity=0.036 Sum_probs=65.1
Q ss_pred CCcEEEEEe--C----CCcEEEEeCCCCceEEEEec----CCceeEEEEcCCCcEEEEEcc-------------------
Q 045370 76 GTTFFVSSS--L----DATCKVWDLGSGILIQTQVY----PQAVTAIAFHPGEQLLFAGSI------------------- 126 (350)
Q Consensus 76 ~~~~l~s~~--~----d~~v~vwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~------------------- 126 (350)
++.+++|+- . -|-+.+.|-++..+...... ..--..+-|.|..+.+++...
T Consensus 140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~ 219 (461)
T PF05694_consen 140 DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGK 219 (461)
T ss_dssp S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccc
Confidence 566666642 2 23577888777777666543 223566778888888877632
Q ss_pred -CCeEEEEeCCccccccccccccccceeeeccCCceEEEEec--CCe---EEEEeCCCcEEEEEC-CCce----EEEEec
Q 045370 127 -DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASH---LISASEDKTVCLWDV-TRRV----SIRRFN 195 (350)
Q Consensus 127 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~---l~s~~~dg~v~iwd~-~~~~----~~~~~~ 195 (350)
...+.+||+...+..+...+. ........+.|. |+. ++.+.-.++|..|-- ..++ .+..+.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg--------~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLG--------EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES---------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred ccCeEEEEECCCCcEeeEEecC--------CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 357999999966544332221 111234455554 333 665555556655533 3322 222221
Q ss_pred cC-----------------CCceeEEEEEccCCeEEeeecCccccccc
Q 045370 196 HK-----------------KGVVTNLVVIRQSSLLSEVSNCQRKLKKD 226 (350)
Q Consensus 196 ~~-----------------~~~v~~l~~~~~~~~l~~~~~~~~~~~~~ 226 (350)
.. ..-|+.+..|.|.++|..++.-..-++..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 10 23478999999999999887754444444
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.61 E-value=76 Score=26.13 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=57.2
Q ss_pred CCCcEEEEEeCC---CcEEEEeCCC----CceEE---EEecCCceeEEEEcCCCcEEEEEccCC-eEEEEeCCccccccc
Q 045370 75 GGTTFFVSSSLD---ATCKVWDLGS----GILIQ---TQVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDH 143 (350)
Q Consensus 75 ~~~~~l~s~~~d---~~v~vwd~~~----~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~ 143 (350)
++|.++.+|+.. ..+++++... ..... .+.....--++..-|||+.|+.|+.+. ...+|.-...... .
T Consensus 76 ~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~-~ 154 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG-P 154 (243)
T ss_pred CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCC-c
Confidence 467888887652 3477887654 11111 122333334445557999999888763 3333333211000 0
Q ss_pred cccccccceee--eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc
Q 045370 144 FIVGEDQHSVL--KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH 196 (350)
Q Consensus 144 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~ 196 (350)
. ........ .....----+...|+| |+.-+..+ -.|||..+.+.++.+..
T Consensus 155 ~--~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 155 V--TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred e--eeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeCCC
Confidence 0 00000000 0001111135567888 44333333 35779998888777763
Done!