BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045372
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 174/429 (40%), Gaps = 88/429 (20%)
Query: 34 LLRQSLSVALSHFPALAGRFSTDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPIDVPD 93
+L+ +LS AL F +AGR D DG I I CN GV F+ A++ V D
Sbjct: 57 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-----------GVVD 105
Query: 94 SFKEF---FAFDRTISYTGHVR-----PLAAVQVTEL-ADGVFVGCTVNHAVTDGTSFWH 144
F +F R I + + L +QVT GV +G + H DG S H
Sbjct: 106 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 165
Query: 145 FFNTFAEITKGAKKISKVPDFSRDTV---------------FDSPAVLKFPAGGPAVTFS 189
F N+++++ +G +P F T+ + P LK P S
Sbjct: 166 FINSWSDMARGLD--VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKV---SPQTAKS 220
Query: 190 GAVPLRE-RIFHFSREAILRMKFRANKGILKSDYYKSVNNEIIGKQSNDSWKTVNGEITS 248
+VP IF +RE I +K ++
Sbjct: 221 DSVPETAVSIFKLTREQISALKAKS----------------------------------- 245
Query: 249 LFETLLKTNANRTDEISSFQSLCAQLWRSVTRARKLESGKTTTFRMAVNCRHRLEPRLSP 308
K + N T SS++ L +WR +AR LE + T +A + R RL P L P
Sbjct: 246 ------KEDGN-TISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 298
Query: 309 YYFGNLIQSIPTVASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADWESNPRLFPL- 367
YFGN+I + +A G+L + + A ++H + DN+ +R + E P L L
Sbjct: 299 GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALV 358
Query: 368 ---GNFDGASITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDL 424
F ++ + S R P++D DFGWGRP+ + G ++G P +GS+ +
Sbjct: 359 RGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAYEGLSFILPSPTNDGSMSV 417
Query: 425 EVVLAPETM 433
+ L E M
Sbjct: 418 AISLQGEHM 426
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 172/428 (40%), Gaps = 86/428 (20%)
Query: 34 LLRQSLSVALSHFPALAGRFSTDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPIDVPD 93
+L+ +LS AL F +AGR D DG I I CN GV F+ A++ V D
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-----------GVVD 108
Query: 94 SFKEF---FAFDRTISYTGHVR-----PLAAVQVTEL-ADGVFVGCTVNHAVTDGTSFWH 144
F +F R I + + L +QVT GV +G + H DG S H
Sbjct: 109 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 168
Query: 145 FFNTFAEITKGAK--------------KISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSG 190
F N+++++ +G + P F PA+ A P S
Sbjct: 169 FINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPAL----AVSPQTAASD 224
Query: 191 AVPLRE-RIFHFSREAILRMKFRANKGILKSDYYKSVNNEIIGKQSNDSWKTVNGEITSL 249
+VP IF +RE I +K ++
Sbjct: 225 SVPETAVSIFKLTREQISALKAKS------------------------------------ 248
Query: 250 FETLLKTNANRTDEISSFQSLCAQLWRSVTRARKLESGKTTTFRMAVNCRHRLEPRLSPY 309
K + N T SS++ L +WR +AR LE + T +A + R RL P L P
Sbjct: 249 -----KEDGN-TISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPG 302
Query: 310 YFGNLIQSIPTVASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADWESNPRLFPL-- 367
YFGN+I + +A G+L + + A ++H + DN+ +R + E P L L
Sbjct: 303 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVR 362
Query: 368 --GNFDGASITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLE 425
F ++ + S R P++D DFGWGRP+ + G ++G P +GS+ +
Sbjct: 363 GAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAYEGLSFILPSPTNDGSMSVA 421
Query: 426 VVLAPETM 433
+ L E M
Sbjct: 422 ISLQGEHM 429
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 172/428 (40%), Gaps = 86/428 (20%)
Query: 34 LLRQSLSVALSHFPALAGRFSTDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPIDVPD 93
+L+ +LS AL F +AGR D DG I I CN GV F+ A++ V D
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-----------GVVD 108
Query: 94 SFKEF---FAFDRTISYTGHVR-----PLAAVQVTEL-ADGVFVGCTVNHAVTDGTSFWH 144
F +F R I + + L +QVT GV +G + H DG S H
Sbjct: 109 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLH 168
Query: 145 FFNTFAEITKGAK--------------KISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSG 190
F N+++++ +G + P F PA+ A P S
Sbjct: 169 FINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPAL----AVSPQTAASD 224
Query: 191 AVPLRE-RIFHFSREAILRMKFRANKGILKSDYYKSVNNEIIGKQSNDSWKTVNGEITSL 249
+VP IF +RE I +K ++
Sbjct: 225 SVPETAVSIFKLTREQISALKAKS------------------------------------ 248
Query: 250 FETLLKTNANRTDEISSFQSLCAQLWRSVTRARKLESGKTTTFRMAVNCRHRLEPRLSPY 309
K + N T SS++ L +WR +AR LE + T +A + R RL P L P
Sbjct: 249 -----KEDGN-TISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPG 302
Query: 310 YFGNLIQSIPTVASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADWESNPRLFPL-- 367
YFGN+I + +A G+L + + A ++H + DN+ +R + E P L L
Sbjct: 303 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVR 362
Query: 368 --GNFDGASITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLE 425
F ++ + S R P++D DFGWGRP+ + G ++G P +GS+ +
Sbjct: 363 GAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAYEGLSFILPSPTNDGSMSVA 421
Query: 426 VVLAPETM 433
+ L E M
Sbjct: 422 ISLQGEHM 429
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 105/465 (22%), Positives = 178/465 (38%), Gaps = 92/465 (19%)
Query: 1 MPSSSTTIISKC---TYIQKGVLLTAPPFSITHFVSL------------LRQSLSVALSH 45
+PSS T KC +++ + +L PF + + L L+QSLS L+H
Sbjct: 14 LPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTH 73
Query: 46 FPALAGRFSTDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPIDVP--DSFKEFFAFDR 103
F LAGR + +S S+ CND+GV F+ A+ ++ + +++ D + A+
Sbjct: 74 FYPLAGRINVNS----SVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPG 129
Query: 104 TISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVP 163
PLA G +G ++H + D S F N + +G +I +P
Sbjct: 130 GKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIV-LP 188
Query: 164 DFSRDTVFDSPAVLKFPA--GGPAVTFSGAVPLRERIFHFSREAILRMKFRANKGILKSD 221
+F A FP P+ + + F F +E I ++ +A
Sbjct: 189 NFDL-------AARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQA-------- 233
Query: 222 YYKSVNNEIIGKQSNDSWKTVNGEITSLFETLLKTNANRTDEISSFQSLCAQLWRSVTRA 281
++A+ S Q + A +W+ V
Sbjct: 234 ----------------------------------SSASEEKNFSRVQLVVAYIWKHVIDV 259
Query: 282 RKLESGKTTTFRM--AVNCRHRLEPRLSPYYFGNLIQSIPTVASVGELLSHD----LGWG 335
+ + G F + AVN R R+ P L Y GN+ + A+V D +G
Sbjct: 260 TRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLL--FAAVDAEWDKDFPDLIGPL 317
Query: 336 AERLHKNVVAHDNETVRRGVADWESNPRLFPLGNFDGASITMGSSPRFPMYDNDFGWGRP 395
L K H++E ++ +E P+ ++ S R YD DFGWG+P
Sbjct: 318 RTSLEKTEDDHNHELLKGMTCLYELEPQEL---------LSFTSWCRLGFYDLDFGWGKP 368
Query: 396 LAVRSGRANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDL 440
L+ + K + + R G+G V+ + +A + MA L +L
Sbjct: 369 LSACTTTFPKRNAAL-LMDTRSGDG-VEAWLPMAEDEMAMLPVEL 411
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 164/422 (38%), Gaps = 70/422 (16%)
Query: 35 LRQSLSVALSHFPALAGRF-----STDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI 89
++ SLS+ L HF G+ T + + V F L +N L
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECN---LDLNELTG-- 119
Query: 90 DVPDSFKEFFAFDRTISYTGHVR-----PLAAVQVTELAD-GVFVGCTVNHAVTDGTSFW 143
+ P + +F+ + + + PL +VQVT + G+ +G T +H + D ++ +
Sbjct: 120 NHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179
Query: 144 HFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSGAVPLRERIFHFSR 203
F + I + + D F + +G PL +RI +
Sbjct: 180 CFLKAWTSIARSG---------NNDESFLA---------------NGTRPLYDRIIKYPM 215
Query: 204 --EAILRMKFRANKGILKSDYYKSVNNEIIGKQSN--DSWKTVNGEITSLFETLLKTNAN 259
EA L+ RA DY V + G ++ I L + +L
Sbjct: 216 LDEAYLK---RAKVESFNEDY---VTQSLAGPSDKLRATFILTRAVINQLKDRVL-AQLP 268
Query: 260 RTDEISSFQSLCAQLWRSVTRARKLESGKTTTFRMAVNCRHRLEPRLSPYYFGNLIQSIP 319
+ +SSF CA +W + ++R + K F ++ R R++P + YFGN +
Sbjct: 269 TLEYVSSFTVACAYIWSCIAKSR---NDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCA 325
Query: 320 TVASVGELLSHDLGWGA-----ERLHKNVVAHDNETVRRGVADWESNPRLFPLGNFDGAS 374
+A L+ + A E LHK + + + ++ D ES L +G
Sbjct: 326 AIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKD---DMESFNDLVS----EGMP 378
Query: 375 ITM---GSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLAPE 431
TM +P+ YD DFGWG+P + + + +G IS +E N +++ V ++
Sbjct: 379 TTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDH-NGAISINSCKESNEDLEIGVCISAT 437
Query: 432 TM 433
M
Sbjct: 438 QM 439
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 161/415 (38%), Gaps = 64/415 (15%)
Query: 35 LRQSLSVALSHFPALAGRF-----STDSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI 89
++ SLS+ L HF G+ T + + V F L +N L
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECN---LDLNELTG-- 119
Query: 90 DVPDSFKEFFAFDRTISYTGHVR-----PLAAVQVTELAD-GVFVGCTVNHAVTDGTSFW 143
+ P + +F+ + + + PL +VQVT + G+ +G T +H + D ++ +
Sbjct: 120 NHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179
Query: 144 HFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSGAVPLRERIFHFSR 203
F + I + + D F + +G PL +RI +
Sbjct: 180 CFLKAWTSIARSG---------NNDESFLA---------------NGTRPLYDRIIKYPX 215
Query: 204 --EAILRMKFRANKGILKSDYYKSVNNEIIGKQSN--DSWKTVNGEITSLFETLLKTNAN 259
EA L+ RA DY V + G ++ I L + +L
Sbjct: 216 LDEAYLK---RAKVESFNEDY---VTQSLAGPSDKLRATFILTRAVINQLKDRVL-AQLP 268
Query: 260 RTDEISSFQSLCAQLWRSVTRARKLESGKTTTFRMAVNCRHRLEPRLSPYYFGNLIQSIP 319
+ +SSF CA +W + ++R + K F ++ R R +P + YFGN +
Sbjct: 269 TLEYVSSFTVACAYIWSCIAKSR---NDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCA 325
Query: 320 TVASVGELLSHDLGWGA-----ERLHKNVVAHDNETVRRGVADWESNPRLFPLGNFDGAS 374
+A L+ + A E LHK + + + ++ D ES L G +
Sbjct: 326 AIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKD---DXESFNDLVSEGXPTTXT 382
Query: 375 ITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLA 429
G+ P+ YD DFGWG+P + + + +G IS +E N +++ V ++
Sbjct: 383 WVSGT-PKLRFYDXDFGWGKPKKLETVSIDH-NGAISINSCKESNEDLEIGVCIS 435
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/438 (23%), Positives = 156/438 (35%), Gaps = 95/438 (21%)
Query: 2 PSSSTTIISKCTYIQ---------KGVLLTAPPFSITHFVSL----LRQSLSVALSHFPA 48
P S+T + TY + +L P S FV L+ SLS+ L ++
Sbjct: 14 PGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLP 73
Query: 49 LAGRFSTDSD------------GHISILCNDTGVDF-----IHAKAT---FLSVNSLLSP 88
LAG + D +S++ +++ DF H + T + V L P
Sbjct: 74 LAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEP 133
Query: 89 IDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELAD-GVFVGCTVNHAVTDGTSFWHFFN 147
D P + P+ A+QVT + G+ +G T +H DG + F
Sbjct: 134 KDAPGV---------------QLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVR 178
Query: 148 TFAEITK-GAKKISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSGAVPLRERIFHFSREAI 206
+A + K G + +F F +V+K P G + + S
Sbjct: 179 AWALLNKFGGDEQFLANEF---IPFYDRSVIKDP-NGVGXSIWNEXKKYKHXXKXSDVVT 234
Query: 207 LRMKFRANKGILKSDYYKSVNNEIIGKQSNDSWKTVNGEITSLFETLLKTNANRTDEISS 266
K R I + D IGK N L+ T + ++S
Sbjct: 235 PPDKVRGTFIITRHD---------IGKLKN----------------LVLTRRPKLTHVTS 269
Query: 267 FQSLCAQLWRSVTRAR-----KLESGKTTTFRMAVNCRHRLEPRLSPYYFGNLIQSIPTV 321
F CA +W + ++ +++ F A +CR + P L P YFGN + V
Sbjct: 270 FTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNAL-----V 324
Query: 322 ASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADWE---SNPRLFPLGNFDGA-SITM 377
V DL G E V E +R+ D E S D S+++
Sbjct: 325 GYVARTRQVDLA-GKEGF-TIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSLSV 382
Query: 378 GSSPRFPMYDNDFGWGRP 395
SP+ +Y DFGWGRP
Sbjct: 383 AGSPKLDLYAADFGWGRP 400
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 246 ITSLFETLLKTNANRTDEISSFQSLCAQLWRSVTRAR--KLESGKTTTFRMAVNCRHRLE 303
++ L + KT T +S+ +L A +W+S +R R +++ T F AV+ R +
Sbjct: 241 MSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAM- 299
Query: 304 PRLSPYYFGNLIQSIPTVASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADW----- 358
+S Y G L +++GE+ + LG A RL + RG+A +
Sbjct: 300 -GVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLATYLHNNP 358
Query: 359 -ESNPRLFPLGNFDGASITMGSSPRFPMYDNDF--GWGRPLAVRSGRANKFDGKISAFPG 415
+SN L + S+ + S + ++D DF G G+P VR + + P
Sbjct: 359 DKSNVSLTADAD-PSTSVMLSSWAKVGLWDYDFGLGLGKPETVRRPIFEPVESLMYFMP- 416
Query: 416 REGNGSVDLEVVLAPETMAGLENDLEFMEY 445
++ +G + L E M L+ D E+ +Y
Sbjct: 417 KKPDGEFCAALSLRDEDMDRLKADKEWTKY 446
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 264 ISSFQSLCAQLWRSVTRAR--KLESGKTTTFRMAVNCRHRLEPRLSPYYFGNLIQSIPTV 321
+S+ +L A +W+S +R R +L++ T F AV+ R +S Y G L
Sbjct: 267 VSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAVDXRGPX--GVSSTYPGLLQNXTYHD 324
Query: 322 ASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADWESNPRLFPLGNFDGASITMGSSP 381
++V E+ + LG A RL + +++ +RR + P + S+T ++P
Sbjct: 325 STVAEIANEPLGATASRLRSEL---NSDRLRRRTQALATYXHGLP--DKSSVSLTADANP 379
Query: 382 RFPM------------YDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLA 429
+ YD FG G+P +VR R F+ + F ++ +G + L
Sbjct: 380 SSSIXLSSWAKVGCWEYDFGFGLGKPESVRRPRFEPFES-LXYFXPKKPDGEFTASISLR 438
Query: 430 PETMAGLENDLEFMEYV 446
E L+ D E+ +Y
Sbjct: 439 DEDXERLKADEEWTKYA 455
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 14/209 (6%)
Query: 247 TSLFETLLKTNANRTDEISSFQSLCAQLWRSVTRAR--KLESGKTTTFRMAVNCRHRLEP 304
+ L + KT T +S+ +L A +W+S +R R +++ T F AV+ R
Sbjct: 243 SELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAX-- 300
Query: 305 RLSPYYFGNLIQSIPTVASVGELLSHDLGWGAERLHKNVVAHDNETVRRGVADW------ 358
+S Y G L +++GE+ + LG A RL + RG+A +
Sbjct: 301 GVSNNYPGLLQNXTYHNSTIGEIANESLGATASRLRSELDPASXRQRTRGLATYLHNNPD 360
Query: 359 ESNPRLFPLGNFDGASITMGSSPRFPMYDNDF--GWGRPLAVRSGRANKFDGKISAFPGR 416
+SN L + S+ + S + ++D DF G G+P VR + + F +
Sbjct: 361 KSNVSLTADAD-PSTSVXLSSWAKVGLWDYDFGLGLGKPETVRRPIFEPVE-SLXYFXPK 418
Query: 417 EGNGSVDLEVVLAPETMAGLENDLEFMEY 445
+ +G + L E L+ D E+ +Y
Sbjct: 419 KPDGEFCAALSLRDEDXDRLKADKEWTKY 447
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 349 ETVRRGVADWESNPRLFPLGNFDGASITMGSSPRFPMYDNDFGW 392
+ R GV +NPR +F+ ++ G R ++D D+GW
Sbjct: 425 QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW 468
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,463,927
Number of Sequences: 62578
Number of extensions: 566531
Number of successful extensions: 1221
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 19
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)