BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045375
         (81 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1
          Length = 269

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 55/64 (85%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          M LSNNVIG IN + VLLSIPVIGA IWLAI   NSCVKLLQWPVIILG+LIL+V LAGF
Sbjct: 1  MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61 IGGF 64
          IGGF
Sbjct: 61 IGGF 64


>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1
          Length = 285

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWPVIILGILILVVALAG 59
          M  SN++IG +N +  LLSIP++G  IWL+  A+++ C++ LQWP+I++GI I+VV+LAG
Sbjct: 1  MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 60 FIG 62
          F G
Sbjct: 61 FAG 63


>sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1
          Length = 270

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MAL+NN+   +NL+A+L SIP+  + IWLA + DN CV LL+WPV++LG+LILVV+  GF
Sbjct: 1  MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61 IGGF 64
          IG +
Sbjct: 61 IGAY 64


>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1
          Length = 282

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 3  LSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
           SN VIG +NL+ +L SIP+IG  ++ A  +  +C   LQ P++++G +IL+V+LAGFIG
Sbjct: 4  FSNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIG 62

Query: 63 G 63
           
Sbjct: 63 A 63


>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1
          Length = 272

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 41/60 (68%)

Query: 3  LSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
           SN+++G +N    LLS+P++   IWL+++A   C + L  P+I LG+ ++++A+AG +G
Sbjct: 4  FSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVG 63


>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1
          Length = 273

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 4  SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
          SNN++G +N +  LLSIP++   IWL+ +    C + L  PVI LG+ ++VVA+AG IG
Sbjct: 5  SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIG 63


>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1
          Length = 263

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%)

Query: 4  SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGG 63
          SNN++G +N    LLSIP++ A IWL   A   C + L  P+++LGI ++ V++AG +G 
Sbjct: 5  SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64


>sp|Q9LSS4|TET4_ARATH Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1
          Length = 327

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWPVIILGILILVVALAG 59
          M   +N+IG IN    LLSIP++G  IWL+  A+++ C++ LQWP+II+GI I+V++LAG
Sbjct: 1  MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 60 FIG 62
            G
Sbjct: 61 IAG 63


>sp|F4I214|TET10_ARATH Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1
          Length = 284

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          M  S  VI  +NL+ +LL++ VI   +W++   D  C + L +PVI LG  I ++++ GF
Sbjct: 3  MGTSTFVIRWVNLLTMLLAVAVIIFGVWMSTHND-GCRRSLTFPVIALGGFIFLISIIGF 61

Query: 61 IGGFGASLGSLY 72
          +G    S+  L+
Sbjct: 62 LGACKRSVALLW 73


>sp|Q84WF6|TET5_ARATH Tetraspanin-5 OS=Arabidopsis thaliana GN=TET5 PE=2 SV=1
          Length = 281

 Score = 35.0 bits (79), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 3  LSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
          +SN VIG +N++ ++ SI ++G+ +W+   +  +C   LQ P++ILG+ IL++++AG +G
Sbjct: 4  MSNTVIGFLNILTLISSIVLLGSALWMG-RSKTTCEHFLQKPLLILGLAILILSVAGLVG 62

Query: 63 G 63
           
Sbjct: 63 A 63


>sp|P34330|YKZ3_CAEEL Uncharacterized protein C14B9.3 OS=Caenorhabditis elegans
          GN=C14B9.3 PE=4 SV=2
          Length = 348

 Score = 34.7 bits (78), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 32 EADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLY 72
          E DNS +  L +PVI+  ++  V+++  F+GG   SL S Y
Sbjct: 46 EDDNSDIAYLNFPVIVPSLVFTVISMGCFVGGIFTSLKSDY 86


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.148    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,875,229
Number of Sequences: 539616
Number of extensions: 928029
Number of successful extensions: 4044
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4009
Number of HSP's gapped (non-prelim): 40
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)