Query 045375
Match_columns 81
No_of_seqs 102 out of 222
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.6 9.5E-16 2.1E-20 108.5 7.5 77 2-78 7-89 (237)
2 PF00335 Tetraspannin: Tetrasp 99.1 2.5E-11 5.5E-16 81.0 0.0 77 3-79 1-83 (221)
3 KOG4433 Tweety transmembrane/c 87.8 1 2.2E-05 36.5 4.5 39 40-78 207-246 (526)
4 PF04156 IncA: IncA protein; 81.0 5.3 0.00012 27.2 5.2 51 10-60 6-60 (191)
5 PF11297 DUF3098: Protein of u 80.9 3.6 7.7E-05 25.1 3.8 23 10-32 5-27 (69)
6 cd07912 Tweety_N N-terminal do 79.4 4.3 9.2E-05 32.1 4.7 38 40-77 206-244 (418)
7 PF05915 DUF872: Eukaryotic pr 65.4 13 0.00028 24.4 3.8 45 10-56 45-90 (115)
8 PF10724 DUF2516: Protein of u 64.8 35 0.00075 22.0 5.7 28 6-33 3-30 (100)
9 PF03729 DUF308: Short repeat 62.1 23 0.0005 19.7 4.1 43 19-65 3-45 (72)
10 PF04906 Tweety: Tweety; Inte 59.8 7.7 0.00017 30.3 2.3 39 40-78 183-222 (406)
11 PF06749 DUF1218: Protein of u 57.0 22 0.00048 22.2 3.7 51 5-56 37-94 (97)
12 PF13706 PepSY_TM_3: PepSY-ass 56.4 23 0.00051 18.4 3.2 26 41-66 8-33 (37)
13 PF04854 DUF624: Protein of un 54.9 14 0.0003 21.6 2.3 19 9-27 2-23 (77)
14 TIGR02230 ATPase_gene1 F0F1-AT 49.4 69 0.0015 20.6 5.6 47 11-65 45-94 (100)
15 COG4993 Gcd Glucose dehydrogen 48.3 69 0.0015 27.4 6.1 57 9-76 4-60 (773)
16 PF04103 CD20: CD20-like famil 48.1 6 0.00013 25.3 0.0 58 16-75 7-64 (150)
17 PF11127 DUF2892: Protein of u 44.4 60 0.0013 18.4 4.3 43 16-65 14-56 (66)
18 PRK07946 putative monovalent c 40.1 83 0.0018 22.0 4.7 46 12-58 4-49 (163)
19 PF11384 DUF3188: Protein of u 37.9 77 0.0017 17.8 3.8 21 39-59 22-42 (49)
20 PF15048 OSTbeta: Organic solu 35.0 59 0.0013 21.9 3.2 26 5-30 36-61 (125)
21 PRK12660 putative monovalent c 34.2 1.1E+02 0.0024 19.8 4.3 48 12-60 2-49 (114)
22 PF12304 BCLP: Beta-casein lik 32.6 1.7E+02 0.0037 21.1 5.4 54 9-62 41-94 (188)
23 TIGR00941 2a6301s03 Multicompo 29.3 1.6E+02 0.0035 19.0 4.6 21 12-32 2-22 (104)
24 PF03823 Neurokinin_B: Neuroki 28.4 68 0.0015 18.9 2.3 18 50-67 8-25 (59)
25 PF03779 SPW: SPW repeat; Int 27.0 1E+02 0.0022 17.3 2.9 17 41-57 27-43 (51)
26 PRK12659 putative monovalent c 25.1 2E+02 0.0044 18.7 4.6 47 12-59 2-48 (117)
27 PF06724 DUF1206: Domain of Un 25.0 48 0.001 19.3 1.3 22 12-33 47-68 (73)
28 PF06772 LtrA: Bacterial low t 24.1 2.7E+02 0.0059 20.7 5.5 53 13-65 256-308 (354)
29 PF02544 Steroid_dh: 3-oxo-5-a 22.4 2.4E+02 0.0052 18.6 5.3 48 9-59 8-55 (150)
30 PRK08600 putative monovalent c 21.6 2.4E+02 0.0053 18.4 4.5 16 12-27 24-39 (113)
31 PF11014 DUF2852: Protein of u 21.3 1.3E+02 0.0029 19.9 3.0 17 13-29 20-36 (115)
32 PF13908 Shisa: Wnt and FGF in 21.1 41 0.00089 22.9 0.5 21 45-65 79-99 (179)
33 PRK12658 putative monovalent c 20.4 2.3E+02 0.005 18.8 4.0 47 12-59 2-48 (125)
34 PF13127 DUF3955: Protein of u 20.4 2E+02 0.0043 16.8 5.4 26 39-64 32-59 (63)
35 PF12666 PrgI: PrgI family pro 20.3 2.1E+02 0.0046 17.1 3.7 19 14-32 22-40 (93)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.63 E-value=9.5e-16 Score=108.45 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=64.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHhheeeeccchhhh----hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 045375 2 ALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVK----LLQ--WPVIILGILILVVALAGFIGGFGASLGSLYFIS 75 (81)
Q Consensus 2 ~~sn~ll~~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~----~l~--~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~ 75 (81)
++.+|+++.+|+++|+.|+.++++|+|+..+++..-.- +.. +.++++|.+++++|++||+||.|||+|+|.+|+
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~ 86 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF 86 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence 47899999999999999999999999999876321111 122 237899999999999999999999999999998
Q ss_pred hcc
Q 045375 76 LPC 78 (81)
Q Consensus 76 ~~~ 78 (81)
+..
T Consensus 87 ~~l 89 (237)
T KOG3882|consen 87 ILL 89 (237)
T ss_pred HHH
Confidence 764
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.06 E-value=2.5e-11 Score=81.00 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhe-eeeccc-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 045375 3 LSNNVIGPINLVAVLLSIPVIGARIWL-AIEADN-----SCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISL 76 (81)
Q Consensus 3 ~sn~ll~~~N~l~~l~gi~ilg~Giwl-~~~~~~-----~c~~~l~~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~ 76 (81)
+.|+++.++|+++++.|+++++.|+|. ..+... +..+.....++.+|.++++++++|++|+++||+|++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 578999999999999999999999999 322211 11122233367789999999999999999999999999988
Q ss_pred ccc
Q 045375 77 PCS 79 (81)
Q Consensus 77 ~~~ 79 (81)
...
T Consensus 81 ~~~ 83 (221)
T PF00335_consen 81 LLI 83 (221)
T ss_dssp ---
T ss_pred chh
Confidence 654
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=87.84 E-value=1 Score=36.54 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=32.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcc
Q 045375 40 LLQWP-VIILGILILVVALAGFIGGFGASLGSLYFISLPC 78 (81)
Q Consensus 40 ~l~~p-li~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~~~ 78 (81)
..+|| .+++=.+.+++-+.+++|-.|+++|++..|+++-
T Consensus 207 ~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~G 246 (526)
T KOG4433|consen 207 SYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCG 246 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 35788 3555566889999999999999999999999874
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.04 E-value=5.3 Score=27.18 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhHhheeeeccchhhhh----hHHHHHHHHHHHHHHHHHHH
Q 045375 10 PINLVAVLLSIPVIGARIWLAIEADNSCVKL----LQWPVIILGILILVVALAGF 60 (81)
Q Consensus 10 ~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~~----l~~pli~~G~~i~lvs~lG~ 60 (81)
+.+....+.|+.+++.|+-..+-...+.... +..-.+++|++++..++.-+
T Consensus 6 i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888875543221111111 11224556666666655444
No 5
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=80.88 E-value=3.6 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHhheeee
Q 045375 10 PINLVAVLLSIPVIGARIWLAIE 32 (81)
Q Consensus 10 ~~N~l~~l~gi~ilg~Giwl~~~ 32 (81)
--|...+..|++++.+|-++..-
T Consensus 5 k~Nyill~iG~~vIilGfilMsg 27 (69)
T PF11297_consen 5 KKNYILLAIGIAVIILGFILMSG 27 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHheeC
Confidence 35889999999999999887663
No 6
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=79.41 E-value=4.3 Score=32.12 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.9
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHhhc
Q 045375 40 LLQWPVIIL-GILILVVALAGFIGGFGASLGSLYFISLP 77 (81)
Q Consensus 40 ~l~~pli~~-G~~i~lvs~lG~~GA~~~~~~lL~~f~~~ 77 (81)
..+||.... =++.+++.+.+++|..|+++|.+.+|++.
T Consensus 206 ~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~ 244 (418)
T cd07912 206 SYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVC 244 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 467885433 33566899999999999999999999764
No 7
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=65.37 E-value=13 Score=24.44 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhHhheeeec-cchhhhhhHHHHHHHHHHHHHHH
Q 045375 10 PINLVAVLLSIPVIGARIWLAIEA-DNSCVKLLQWPVIILGILILVVA 56 (81)
Q Consensus 10 ~~N~l~~l~gi~ilg~Giwl~~~~-~~~c~~~l~~pli~~G~~i~lvs 56 (81)
.+-+..++.|...+.+|..+..+. +.+ +--.+|++++|+++++=+
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~i~~~--~~~~~~llilG~L~fIPG 90 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGHIDGD--RDRGWALLILGILCFIPG 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCC--CcccchHHHHHHHHHhcc
Confidence 344667788888899998776643 111 223578999999888644
No 8
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=64.81 E-value=35 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhheeeec
Q 045375 6 NVIGPINLVAVLLSIPVIGARIWLAIEA 33 (81)
Q Consensus 6 ~ll~~~N~l~~l~gi~ilg~Giwl~~~~ 33 (81)
.+....+.+.+++.+.+++.++|...|.
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999988764
No 9
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=62.06 E-value=23 Score=19.67 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=19.1
Q ss_pred HHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045375 19 SIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFG 65 (81)
Q Consensus 19 gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~ 65 (81)
|+..+..|+++..+++ .........+|...++-+..-...+.+
T Consensus 3 Gil~iv~Gi~~l~~p~----~~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 3 GILFIVLGILLLFNPD----ASLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555444321 111222344455555555555555544
No 10
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=59.82 E-value=7.7 Score=30.25 Aligned_cols=39 Identities=31% Similarity=0.310 Sum_probs=28.2
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcc
Q 045375 40 LLQWPVI-ILGILILVVALAGFIGGFGASLGSLYFISLPC 78 (81)
Q Consensus 40 ~l~~pli-~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~~~ 78 (81)
..+||.- .+=.+.+++-++++.|..|+++|++..+++..
T Consensus 183 ~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~g 222 (406)
T PF04906_consen 183 YYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLG 222 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeecc
Confidence 3577732 22235668889999999999999998777643
No 11
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=57.03 E-value=22 Score=22.23 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhheeeec-------cchhhhhhHHHHHHHHHHHHHHH
Q 045375 5 NNVIGPINLVAVLLSIPVIGARIWLAIEA-------DNSCVKLLQWPVIILGILILVVA 56 (81)
Q Consensus 5 n~ll~~~N~l~~l~gi~ilg~Giwl~~~~-------~~~c~~~l~~pli~~G~~i~lvs 56 (81)
..+.+++..+....+...+..|.....++ +.+| ...+..+...|.++.+++
T Consensus 37 a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~~~~C-~~~k~GvF~~~a~l~l~t 94 (97)
T PF06749_consen 37 AVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWFNPSC-YTVKKGVFAGGAVLSLVT 94 (97)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccccccccccCCcc-cccCCceeeHhHHHHHHH
Confidence 45677778888888889999998765543 3457 445566777766655543
No 12
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=56.38 E-value=23 Score=18.44 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045375 41 LQWPVIILGILILVVALAGFIGGFGA 66 (81)
Q Consensus 41 l~~pli~~G~~i~lvs~lG~~GA~~~ 66 (81)
.++--+++|.+++++.+.|..-.+++
T Consensus 8 H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 8 HRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556889999999999999988765
No 13
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=54.89 E-value=14 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHH---HHHHHHHHhHh
Q 045375 9 GPINLVAV---LLSIPVIGARI 27 (81)
Q Consensus 9 ~~~N~l~~---l~gi~ilg~Gi 27 (81)
..+|++++ +.|+++++.|-
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigP 23 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGP 23 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999 99999999884
No 14
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=49.43 E-value=69 Score=20.61 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH---hHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045375 11 INLVAVLLSIPVIG---ARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFG 65 (81)
Q Consensus 11 ~N~l~~l~gi~ilg---~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~ 65 (81)
+..+-|-..+++++ .|.|+-.+.+++ ..+..+++.+|+ .+||..+|+
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~--~~~tl~~lllGv------~~G~~n~w~ 94 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSP--FSWTLTMLIVGV------VIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHH------HHHHHHHHH
Confidence 33444444444443 788887655443 355566666675 356666653
No 15
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=48.29 E-value=69 Score=27.41 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 045375 9 GPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISL 76 (81)
Q Consensus 9 ~~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~ 76 (81)
-+.-+++.++|+++++-|+|+..-+.+ +--++.|..+++.+++ -++|++-.|+.|..
T Consensus 4 ~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~l----l~~~k~aal~lya~ 60 (773)
T COG4993 4 TLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWL----LLRRKRAALWLYAL 60 (773)
T ss_pred hHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHH----HhccchhHHHHHHH
Confidence 345577889999999999999875533 2234456555555554 36788888888864
No 16
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=48.10 E-value=6 Score=25.29 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 045375 16 VLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFIS 75 (81)
Q Consensus 16 ~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~ 75 (81)
.++|+..+..|+.+.....+ .......|+.. |+...+-+.+|...+.|+++|++..+.
T Consensus 7 I~lGi~~i~lGi~~~~~~~~-~~~~~~~piW~-G~~fiisG~l~i~s~k~~~~~lv~~~l 64 (150)
T PF04103_consen 7 ILLGILSIVLGIIALSLSSS-VLVYIGYPIWG-GIFFIISGILGIASEKKPTKCLVIASL 64 (150)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHhcccHHH-HHHHHhhHHHHHHHhcCCcccchHHHH
Confidence 36788888888876653322 11122344443 777888889998889999888876654
No 17
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=44.36 E-value=60 Score=18.44 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045375 16 VLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFG 65 (81)
Q Consensus 16 ~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~ 65 (81)
.+.|+.++..|.....+. . .+....+|+..+.-++.|.|..++
T Consensus 14 ~~~G~~l~~~~~~~~~~~--~-----~~~~~~~g~~ll~~g~~g~Cp~~~ 56 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGS--W-----GWLLGFVGAMLLVTGITGFCPLYA 56 (66)
T ss_pred HHHHHHHHHHHHHhcccc--h-----HHHHHHHHHHHHHHHHHCcCHhHH
Confidence 456666666664333221 1 455778899999999999988654
No 18
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=40.08 E-value=83 Score=22.01 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHH
Q 045375 12 NLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALA 58 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~l 58 (81)
|++..+....+++.|+|+..+. +--.+.+.--++.-|+.+++++.-
T Consensus 4 ~l~~~i~~gvL~~~G~Ylll~r-nLir~iiGl~il~~~vnLlii~~G 49 (163)
T PRK07946 4 NLGLLVAIGVLTSAGVYLLLER-SLTRMLLGLLLIGNGVNLLILTAG 49 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666667777777766543 111122233344445555555544
No 19
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=37.90 E-value=77 Score=17.82 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 045375 39 KLLQWPVIILGILILVVALAG 59 (81)
Q Consensus 39 ~~l~~pli~~G~~i~lvs~lG 59 (81)
+...-|.+.+|..+.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 666789999998777665443
No 20
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=35.03 E-value=59 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhee
Q 045375 5 NNVIGPINLVAVLLSIPVIGARIWLA 30 (81)
Q Consensus 5 n~ll~~~N~l~~l~gi~ilg~Giwl~ 30 (81)
||.+-.+.++.+++|+.++|-+|-.-
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 88999999999999999999998554
No 21
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=34.21 E-value=1.1e+02 Score=19.79 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 045375 12 NLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~ 60 (81)
|++..+.+..+.+.|+|...+.+ --.....--++.-|+.++++++-+.
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn-li~~ligl~im~~avnL~~v~~g~~ 49 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN-LIRIVIGISIYTHAGNLIIMSMGGY 49 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777788887654321 1111122224444555555555444
No 22
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=32.57 E-value=1.7e+02 Score=21.05 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045375 9 GPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62 (81)
Q Consensus 9 ~~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~G 62 (81)
.+-|.+....|+.-+..||-...-..+.-.+-++|.+++.+..=-++|..-+.|
T Consensus 41 ~vsNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S~ln~LlSaAc~vG 94 (188)
T PF12304_consen 41 AVSNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVSLLNALLSAACAVG 94 (188)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999865543222222557898888887777777776666
No 23
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=29.33 E-value=1.6e+02 Score=18.95 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHhheeee
Q 045375 12 NLVAVLLSIPVIGARIWLAIE 32 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~ 32 (81)
|.+..+....+.+.|+|+..+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~ 22 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLS 22 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666665543
No 24
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=28.36 E-value=68 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045375 50 ILILVVALAGFIGGFGAS 67 (81)
Q Consensus 50 ~~i~lvs~lG~~GA~~~~ 67 (81)
++++.+|+..-+||.||.
T Consensus 8 ~aiLalsla~s~gavCee 25 (59)
T PF03823_consen 8 AAILALSLARSFGAVCEE 25 (59)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 347788999999998875
No 25
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=27.03 E-value=1e+02 Score=17.26 Aligned_cols=17 Identities=41% Similarity=0.884 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 045375 41 LQWPVIILGILILVVAL 57 (81)
Q Consensus 41 l~~pli~~G~~i~lvs~ 57 (81)
..+.-++.|+++.++|+
T Consensus 27 ~~~~~vi~G~~v~~la~ 43 (51)
T PF03779_consen 27 AAWNNVIVGILVALLAL 43 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445788988888773
No 26
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.12 E-value=2e+02 Score=18.66 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHH
Q 045375 12 NLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAG 59 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG 59 (81)
|.+..+....+++.|+|...+++ --.....-.++.-|+.+++++.-.
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn-li~~ligl~im~~avnL~~v~~g~ 48 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS-IVKLVIGLILLGNAANLLIFTVGR 48 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777788888888776432 111223333455566566665543
No 27
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=25.01 E-value=48 Score=19.27 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHhheeeec
Q 045375 12 NLVAVLLSIPVIGARIWLAIEA 33 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~~ 33 (81)
..+.++.|+.+++.|+|...+.
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~a 68 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVKA 68 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999987654
No 28
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=24.11 E-value=2.7e+02 Score=20.67 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045375 13 LVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFG 65 (81)
Q Consensus 13 ~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~ 65 (81)
=+.+..|+.+++.|+=...+.+.+-+.......+..|..+++++....--..+
T Consensus 256 Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~ 308 (354)
T PF06772_consen 256 HLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNK 308 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778899999999765554432211222222347788777777665544333
No 29
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=22.41 E-value=2.4e+02 Score=18.60 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHH
Q 045375 9 GPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAG 59 (81)
Q Consensus 9 ~~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG 59 (81)
.+.|..++++...+.+. |+...++. ..+....|...+|+.+++++..+
T Consensus 8 ~~~~~~f~~~ng~l~~~--~~~~~~~~-~~~~~~~~~~~~g~~lf~~g~~~ 55 (150)
T PF02544_consen 8 VFMNCFFWVLNGYLIGY--YLSYYAPY-QYTWLPSPRFIIGLALFLIGSIG 55 (150)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCCcc-cccchhhHHHHHHHHHHHHHHHH
Confidence 34455577766655543 44433211 22334456788898888766543
No 30
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.63 E-value=2.4e+02 Score=18.36 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhHh
Q 045375 12 NLVAVLLSIPVIGARI 27 (81)
Q Consensus 12 N~l~~l~gi~ilg~Gi 27 (81)
|++=.+.|+.+++.|+
T Consensus 24 nlik~iigl~i~~~~v 39 (113)
T PRK08600 24 SLLRIIIGTTLLSHGA 39 (113)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4444444555555444
No 31
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=21.28 E-value=1.3e+02 Score=19.89 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhHhhe
Q 045375 13 LVAVLLSIPVIGARIWL 29 (81)
Q Consensus 13 ~l~~l~gi~ilg~Giwl 29 (81)
++||=+|+++++.-+|-
T Consensus 20 i~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 20 IVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56999999999999995
No 32
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=21.13 E-value=41 Score=22.86 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045375 45 VIILGILILVVALAGFIGGFG 65 (81)
Q Consensus 45 li~~G~~i~lvs~lG~~GA~~ 65 (81)
.|++|++++++.+++.++++.
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeehhhHHHHHHHhHhhhe
Confidence 367777777777777666543
No 33
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.44 E-value=2.3e+02 Score=18.81 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhHhheeeeccchhhhhhHHHHHHHHHHHHHHHHHH
Q 045375 12 NLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAG 59 (81)
Q Consensus 12 N~l~~l~gi~ilg~Giwl~~~~~~~c~~~l~~pli~~G~~i~lvs~lG 59 (81)
|++..+....+.+.|+|+..+++ --.+...--++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn-lir~iigl~il~~avnLlii~~g~ 48 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH-IIRILFGLALLGNAVNLLIFTAGR 48 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566777788888888776532 111223333455566566555443
No 34
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=20.42 E-value=2e+02 Score=16.81 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=14.4
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHH
Q 045375 39 KLLQWP--VIILGILILVVALAGFIGGF 64 (81)
Q Consensus 39 ~~l~~p--li~~G~~i~lvs~lG~~GA~ 64 (81)
..+..| ++-+|-+.++.|..=..+..
T Consensus 32 G~L~EpFfLiPlg~l~~~~g~~~~i~~~ 59 (63)
T PF13127_consen 32 GVLHEPFFLIPLGYLFLLIGIISLIIYL 59 (63)
T ss_pred CeEecccHHHHHHHHHHHHHHHHHHHHH
Confidence 455666 36666666666655444433
No 35
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.31 E-value=2.1e+02 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHhheeee
Q 045375 14 VAVLLSIPVIGARIWLAIE 32 (81)
Q Consensus 14 l~~l~gi~ilg~Giwl~~~ 32 (81)
+.++.+..+++.|+|...+
T Consensus 22 l~~l~~~~~~~~~~~~~~~ 40 (93)
T PF12666_consen 22 LICLAIGALVGVGVYLLLW 40 (93)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666677788777654
Done!