Query 045375
Match_columns 81
No_of_seqs 102 out of 222
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 14.4 1.5E+02 0.005 16.3 2.5 13 45-57 14-26 (52)
2 2klu_A T-cell surface glycopro 11.3 2.1E+02 0.0072 16.5 2.7 19 45-63 11-29 (70)
3 1y29_A Huwentoxin-X; A double- 11.2 8.6 0.0003 18.7 -2.9 10 60-69 18-27 (28)
4 3mp7_B Preprotein translocase 11.2 2.1E+02 0.0071 15.8 2.6 17 45-61 34-50 (61)
5 2l9x_A Uncharacterized protein 9.4 88 0.003 15.1 0.5 11 57-67 6-16 (30)
6 1rh5_B Preprotein translocase 7.9 3.6E+02 0.012 15.4 3.4 17 45-61 38-54 (74)
7 2pjv_A Envelope glycoprotein; 6.9 2.5E+02 0.0085 13.8 1.5 9 55-63 6-14 (31)
8 4ev6_A Magnesium transport pro 6.7 6.6E+02 0.023 17.4 4.3 62 5-70 276-339 (339)
9 4a2n_B Isoprenylcysteine carbo 6.5 5.8E+02 0.02 16.5 5.5 25 42-66 74-98 (194)
10 2ww9_B Protein transport prote 6.4 4.6E+02 0.016 15.3 3.4 17 45-61 51-67 (80)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=14.44 E-value=1.5e+02 Score=16.29 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 045375 45 VIILGILILVVAL 57 (81)
Q Consensus 45 li~~G~~i~lvs~ 57 (81)
+++.+++++++++
T Consensus 14 Lva~~~fl~vlAl 26 (52)
T 1xrd_A 14 LVGLATFLFVLAL 26 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=11.34 E-value=2.1e+02 Score=16.55 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045375 45 VIILGILILVVALAGFIGG 63 (81)
Q Consensus 45 li~~G~~i~lvs~lG~~GA 63 (81)
++++|...-++-|.|++=-
T Consensus 11 LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 11 LIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3678887777777776543
No 3
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=11.24 E-value=8.6 Score=18.75 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=5.0
Q ss_pred HHHHHhhhhH
Q 045375 60 FIGGFGASLG 69 (81)
Q Consensus 60 ~~GA~~~~~~ 69 (81)
|||.+.+|+|
T Consensus 18 CCG~Cs~nkC 27 (28)
T 1y29_A 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred cccccccCcc
Confidence 4555555544
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.17 E-value=2.1e+02 Score=15.84 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045375 45 VIILGILILVVALAGFI 61 (81)
Q Consensus 45 li~~G~~i~lvs~lG~~ 61 (81)
.-+.|+-++++++.|+.
T Consensus 34 ak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 34 AKITGLGIILIGLIGML 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444446666666653
No 5
>2l9x_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTH; NMR {Bacillus cereus 95}
Probab=9.41 E-value=88 Score=15.06 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=7.8
Q ss_pred HHHHHHHHhhh
Q 045375 57 LAGFIGGFGAS 67 (81)
Q Consensus 57 ~lG~~GA~~~~ 67 (81)
..||+|+|--+
T Consensus 6 vigcigscvis 16 (30)
T 2l9x_A 6 VIGCIGSCVIS 16 (30)
T ss_dssp HHHHTTHHHHH
T ss_pred EEeeeeeEEEe
Confidence 46888887544
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=7.94 E-value=3.6e+02 Score=15.43 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045375 45 VIILGILILVVALAGFI 61 (81)
Q Consensus 45 li~~G~~i~lvs~lG~~ 61 (81)
.-+.|+-++++++.|+.
T Consensus 38 ak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556677777764
No 7
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=6.89 E-value=2.5e+02 Score=13.76 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 045375 55 VALAGFIGG 63 (81)
Q Consensus 55 vs~lG~~GA 63 (81)
..|+|+.||
T Consensus 6 a~FLGFLga 14 (31)
T 2pjv_A 6 ALFLGFLGA 14 (31)
T ss_dssp HHHHTHHHH
T ss_pred hHHHHHhhc
Confidence 345566655
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.72 E-value=6.6e+02 Score=17.41 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhee-eec-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045375 5 NNVIGPINLVAVLLSIPVIGARIWLA-IEA-DNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGS 70 (81)
Q Consensus 5 n~ll~~~N~l~~l~gi~ilg~Giwl~-~~~-~~~c~~~l~~pli~~G~~i~lvs~lG~~GA~~~~~~l 70 (81)
|-.+-.+..++.+.-.+-+..|+|=. .+. +..- .-...| +++| ++++...+..--+|+++||
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~gy~-~~l~--~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN-NPQGFW-LVMA--LMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS-CTTHHH-HHHH--HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc-CchHHH-HHHH--HHHHHHHHHHHHHHHcCCC
Confidence 55666777777777888888998843 231 1110 111233 3333 2334444555556766653
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=6.55 E-value=5.8e+02 Score=16.52 Aligned_cols=25 Identities=4% Similarity=0.112 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 045375 42 QWPVIILGILILVVALAGFIGGFGA 66 (81)
Q Consensus 42 ~~pli~~G~~i~lvs~lG~~GA~~~ 66 (81)
..++..+|.++.+.|+....-|.++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~ 98 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKD 98 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999888887777654
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=6.42 E-value=4.6e+02 Score=15.27 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045375 45 VIILGILILVVALAGFI 61 (81)
Q Consensus 45 li~~G~~i~lvs~lG~~ 61 (81)
.-+.|+-+.++++.|+.
T Consensus 51 ak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555557777887764
Done!