Query 045376
Match_columns 244
No_of_seqs 189 out of 1152
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 9.3E-75 2E-79 528.7 21.7 237 1-237 172-408 (408)
2 KOG2288 Galactosyltransferases 100.0 2.6E-66 5.6E-71 443.2 13.8 229 1-237 44-273 (274)
3 PF01762 Galactosyl_T: Galacto 100.0 4E-46 8.7E-51 314.7 15.6 175 3-180 17-195 (195)
4 PLN03133 beta-1,3-galactosyltr 100.0 2.4E-44 5.3E-49 345.5 21.0 206 5-231 417-630 (636)
5 KOG2287 Galactosyltransferases 100.0 8.3E-43 1.8E-47 319.0 19.8 208 4-227 126-339 (349)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 3.2E-29 6.9E-34 226.8 12.5 198 6-230 121-360 (382)
7 PF02434 Fringe: Fringe-like; 99.5 1.9E-14 4.1E-19 126.5 9.5 143 35-185 55-208 (252)
8 KOG2246 Galactosyltransferases 99.5 3.3E-13 7.2E-18 124.2 10.5 120 39-179 140-268 (364)
9 PLN03153 hypothetical protein; 98.9 6.7E-09 1.4E-13 98.3 9.9 106 63-185 208-318 (537)
10 KOG3708 Uncharacterized conser 97.5 0.00044 9.6E-09 65.6 8.2 114 40-177 69-192 (681)
11 cd02520 Glucosylceramide_synth 94.1 1.5 3.2E-05 36.1 12.3 134 6-175 30-165 (196)
12 PF13641 Glyco_tranf_2_3: Glyc 93.7 1.4 3.1E-05 36.7 11.6 157 6-175 30-198 (228)
13 PF13506 Glyco_transf_21: Glyc 93.4 0.12 2.7E-06 42.7 4.5 126 49-177 15-144 (175)
14 TIGR03472 HpnI hopanoid biosyn 93.4 0.81 1.8E-05 42.2 10.3 161 6-174 70-240 (373)
15 cd02525 Succinoglycan_BP_ExoA 92.7 2.5 5.5E-05 35.3 11.7 158 6-175 31-196 (249)
16 cd04186 GT_2_like_c Subfamily 92.4 2.6 5.6E-05 32.6 10.7 82 64-177 73-157 (166)
17 cd04192 GT_2_like_e Subfamily 91.9 2.3 5E-05 35.1 10.3 163 7-177 29-201 (229)
18 cd06421 CESA_CelA_like CESA_Ce 90.9 1.1 2.4E-05 37.3 7.5 117 58-180 77-206 (234)
19 PF13632 Glyco_trans_2_3: Glyc 90.6 1.3 2.8E-05 36.2 7.5 116 68-187 1-126 (193)
20 cd06423 CESA_like CESA_like is 90.5 4.9 0.00011 30.7 10.5 94 56-149 69-170 (180)
21 PF00535 Glycos_transf_2: Glyc 90.2 1.8 3.9E-05 33.2 7.6 135 6-148 27-168 (169)
22 TIGR03469 HonB hopene-associat 89.8 3 6.6E-05 38.6 9.9 161 7-176 71-253 (384)
23 cd02510 pp-GalNAc-T pp-GalNAc- 89.3 10 0.00022 33.4 12.6 123 57-179 75-219 (299)
24 cd04196 GT_2_like_d Subfamily 87.8 13 0.00029 30.1 11.8 154 6-172 27-189 (214)
25 PRK11204 N-glycosyltransferase 87.2 9.6 0.00021 35.3 11.6 146 24-179 98-254 (420)
26 cd04187 DPM1_like_bac Bacteria 84.4 9.9 0.00022 30.3 9.0 136 6-152 29-166 (181)
27 cd04185 GT_2_like_b Subfamily 84.0 21 0.00046 28.9 11.6 102 51-182 66-170 (202)
28 PF01755 Glyco_transf_25: Glyc 83.2 2.6 5.6E-05 34.9 5.2 28 133-161 170-197 (200)
29 PF04646 DUF604: Protein of un 82.4 1.4 3.1E-05 38.8 3.3 51 134-184 12-66 (255)
30 cd06420 GT2_Chondriotin_Pol_N 81.9 9 0.00019 30.4 7.8 96 57-173 71-166 (182)
31 cd02526 GT2_RfbF_like RfbF is 81.8 28 0.00061 28.8 12.3 146 34-182 46-201 (237)
32 COG1215 Glycosyltransferases, 81.4 15 0.00033 33.8 10.1 165 7-180 85-260 (439)
33 cd06433 GT_2_WfgS_like WfgS an 81.4 13 0.00029 29.5 8.7 111 56-173 66-180 (202)
34 cd04195 GT2_AmsE_like GT2_AmsE 80.4 20 0.00044 28.9 9.6 116 57-179 72-195 (201)
35 PRK14583 hmsR N-glycosyltransf 79.9 37 0.00079 32.0 12.3 160 6-178 104-274 (444)
36 cd06439 CESA_like_1 CESA_like_ 78.3 25 0.00054 29.6 9.8 110 57-173 101-215 (251)
37 cd06434 GT2_HAS Hyaluronan syn 77.9 24 0.00052 29.2 9.4 157 6-174 28-200 (235)
38 TIGR01556 rhamnosyltran L-rham 76.6 48 0.001 28.7 11.3 57 32-90 42-98 (281)
39 cd06437 CESA_CaSu_A2 Cellulose 73.4 52 0.0011 27.3 12.4 116 57-179 79-207 (232)
40 cd06435 CESA_NdvC_like NdvC_li 73.0 53 0.0011 27.2 11.1 113 56-174 73-196 (236)
41 cd04179 DPM_DPG-synthase_like 67.2 59 0.0013 25.6 9.0 133 6-149 28-167 (185)
42 cd04184 GT2_RfbC_Mx_like Myxoc 64.9 71 0.0015 25.5 12.5 109 57-175 75-189 (202)
43 cd02514 GT13_GLCNAC-TI GT13_GL 63.7 41 0.00089 31.0 8.2 81 55-148 87-174 (334)
44 PLN02726 dolichyl-phosphate be 61.4 99 0.0021 26.1 12.8 116 57-177 85-210 (243)
45 cd06442 DPM1_like DPM1_like re 61.1 89 0.0019 25.4 9.7 85 64-149 77-167 (224)
46 cd02522 GT_2_like_a GT_2_like_ 60.2 79 0.0017 25.7 8.8 104 58-173 65-173 (221)
47 TIGR03111 glyc2_xrt_Gpos1 puta 56.3 82 0.0018 29.7 9.1 111 56-169 122-248 (439)
48 KOG3818 DNA polymerase epsilon 54.9 72 0.0016 30.7 8.1 91 5-106 230-328 (525)
49 cd04188 DPG_synthase DPG_synth 54.5 1.2E+02 0.0025 24.7 10.2 88 6-101 30-119 (211)
50 COG4092 Predicted glycosyltran 53.7 66 0.0014 29.0 7.3 78 6-88 38-117 (346)
51 COG1216 Predicted glycosyltran 51.7 1.3E+02 0.0029 26.5 9.3 137 34-173 55-206 (305)
52 cd06427 CESA_like_2 CESA_like_ 51.7 1.4E+02 0.0031 24.9 9.3 119 56-177 75-204 (241)
53 cd00761 Glyco_tranf_GTA_type G 48.5 1E+02 0.0022 22.4 11.4 31 58-88 70-100 (156)
54 cd04191 Glucan_BSP_ModH Glucan 47.1 89 0.0019 27.3 7.3 133 34-175 63-219 (254)
55 PF10111 Glyco_tranf_2_2: Glyc 43.0 2.3E+02 0.005 24.8 11.2 162 6-175 34-210 (281)
56 cd06913 beta3GnTL1_like Beta 1 40.7 50 0.0011 27.2 4.6 43 58-100 77-119 (219)
57 PRK14716 bacteriophage N4 adso 39.1 2.2E+02 0.0047 27.8 9.2 110 65-178 158-282 (504)
58 PRK10714 undecaprenyl phosphat 38.0 3E+02 0.0066 24.7 10.0 135 6-151 38-175 (325)
59 PF09258 Glyco_transf_64: Glyc 37.3 41 0.0009 29.4 3.6 101 64-170 74-180 (247)
60 cd06532 Glyco_transf_25 Glycos 34.9 79 0.0017 24.3 4.5 21 134-154 99-119 (128)
61 TIGR03030 CelA cellulose synth 34.9 99 0.0021 31.3 6.3 122 57-183 220-356 (713)
62 cd06438 EpsO_like EpsO protein 34.3 2.4E+02 0.0051 22.4 10.4 92 52-147 67-169 (183)
63 PF06306 CgtA: Beta-1,4-N-acet 34.0 1.7E+02 0.0037 27.0 7.0 78 12-90 117-200 (347)
64 PF10686 DUF2493: Protein of u 30.8 1E+02 0.0022 21.6 4.1 37 5-41 2-38 (71)
65 PF03452 Anp1: Anp1; InterPro 29.4 2.4E+02 0.0053 25.2 7.1 85 6-91 56-168 (269)
66 PF00483 NTP_transferase: Nucl 26.6 2.5E+02 0.0055 23.4 6.7 80 66-150 103-192 (248)
67 PF13712 Glyco_tranf_2_5: Glyc 26.2 77 0.0017 27.0 3.4 30 55-84 44-73 (217)
68 PF13704 Glyco_tranf_2_4: Glyc 26.0 2.4E+02 0.0053 19.9 7.0 71 5-82 17-88 (97)
69 PF05412 Peptidase_C33: Equine 25.5 48 0.001 25.4 1.7 29 50-78 47-81 (108)
70 COG3306 Glycosyltransferase in 23.6 1.2E+02 0.0026 26.8 4.1 54 131-184 153-208 (255)
71 cd04190 Chitin_synth_C C-termi 22.1 1.5E+02 0.0033 25.1 4.5 113 64-176 72-211 (244)
72 PF02485 Branch: Core-2/I-Bran 20.3 4.5E+02 0.0097 22.1 7.1 141 26-170 44-200 (244)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.3e-75 Score=528.68 Aligned_cols=237 Identities=70% Similarity=1.335 Sum_probs=226.9
Q ss_pred CcccCCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecH
Q 045376 1 MEKEKGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNL 80 (244)
Q Consensus 1 ~~~~~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~ 80 (244)
||+++|+++|||||++++++++++++|++|+++|||||++||.|+|.|||+||+++|+||.++++++||+|+|||+|||+
T Consensus 172 le~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv 251 (408)
T PLN03193 172 LEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNI 251 (408)
T ss_pred cccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcH
Confidence 46789999999999998766688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCceEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCc
Q 045376 81 GALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYAN 160 (244)
Q Consensus 81 ~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~ 160 (244)
++|+.+|.+.+.++++|+|+|+.+|++.+++.|||+|++|+|+++++.|||||+|+|||||+|+|++|+.++..++.|++
T Consensus 252 ~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~ 331 (408)
T PLN03193 252 ATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYAN 331 (408)
T ss_pred HHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCc
Confidence 99999998877777899999998999877788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCccccccCcCcccccCcHHHHHHHHHhcCCCCccccccch
Q 045376 161 EDVSLGSWFIGLDVEHVDDRSMCCGTPPDCEWKAKEGSVCVASFDWPCSGICNAVERMKEVHNSCGERDGAVWNVDL 237 (244)
Q Consensus 161 EDV~iG~~l~~l~v~~~~~~~f~~~~~~~~~~k~~~~n~c~~~~~~~~~g~~~~~~~m~~~h~~~~~~~~~~~~~~~ 237 (244)
|||+||+||.||+|+|+|+++|||+++|+|+||+++||+|+++|||+|||+|++.++|+++|++|+++..|+|++.|
T Consensus 332 EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 332 EDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred chhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-66 Score=443.21 Aligned_cols=229 Identities=59% Similarity=1.032 Sum_probs=218.7
Q ss_pred CcccCCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEec-ccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEec
Q 045376 1 MEKEKGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLN-LIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVN 79 (244)
Q Consensus 1 ~~~~~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d-~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn 79 (244)
||+++||.+|||||+.. .+.+.+++|++|+++|+|+|++| ++|+|.+|+.||+++|.+|.++++++||+|+|||+|||
T Consensus 44 le~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~ 122 (274)
T KOG2288|consen 44 LEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHEEAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVR 122 (274)
T ss_pred hccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhHHHHHHHHHHHHHHHHHHHHhccceEEEEccccceec
Confidence 79999999999999943 35688999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCceEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCC
Q 045376 80 LGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYA 159 (244)
Q Consensus 80 ~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~ 159 (244)
++.|...|++++.++++|+|||++|||+.++++|||+|+ |+|+..++ |+||+.|++|+||++++.+|..|+..++.|.
T Consensus 123 l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~ 200 (274)
T KOG2288|consen 123 LARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFGDNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYA 200 (274)
T ss_pred HHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcCcccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhc
Confidence 999999999999999999999999999999999999999 99988777 9999999999999999999999999999999
Q ss_pred chhHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCccccccCcCcccccCcHHHHHHHHHhcCCCCccccccch
Q 045376 160 NEDVSLGSWFIGLDVEHVDDRSMCCGTPPDCEWKAKEGSVCVASFDWPCSGICNAVERMKEVHNSCGERDGAVWNVDL 237 (244)
Q Consensus 160 ~EDV~iG~~l~~l~v~~~~~~~f~~~~~~~~~~k~~~~n~c~~~~~~~~~g~~~~~~~m~~~h~~~~~~~~~~~~~~~ 237 (244)
+|||++|.|+.||+|+|+||+++|++++ |++.+++|..+++|+|+|+|+++.+|.++|..|.+...+.|...+
T Consensus 201 nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 201 NEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred cCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeeeecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999764 788999999999999999999999999999999999999997653
No 3
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4e-46 Score=314.73 Aligned_cols=175 Identities=27% Similarity=0.367 Sum_probs=158.1
Q ss_pred ccCCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHH
Q 045376 3 KEKGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLG 81 (244)
Q Consensus 3 ~~~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~ 81 (244)
+..+++++||+|.+++.++.++++|++|+++|+||||+|+.|+|.|||+||+++|+|+.+ |++++|++|+|||+|||++
T Consensus 17 ~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 17 KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 347899999999998655678888999999999999999999999999999999999999 8889999999999999999
Q ss_pred HHHHHHHcc--CCCC-ceEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCC
Q 045376 82 ALMNALANH--KSKP-RIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTY 158 (244)
Q Consensus 82 ~L~~~L~~~--~~~~-~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~ 158 (244)
+|.++|... ...+ .+|.+++..+++.+++.+|||+|... |+.+.|||||+|++|+||+++|+.|+.++..++.+
T Consensus 97 ~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~---y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~ 173 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEE---YPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFF 173 (195)
T ss_pred HhhhhhhhcccCccccccccccccCCccccccccCceeeeee---cccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCC
Confidence 999999987 2333 35555566677778999999999864 89999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhcCCCeEecCC
Q 045376 159 ANEDVSLGSWFIGLDVEHVDDR 180 (244)
Q Consensus 159 ~~EDV~iG~~l~~l~v~~~~~~ 180 (244)
++|||++|+|+.+++++++|++
T Consensus 174 ~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 174 PLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred CchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999864
No 4
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.4e-44 Score=345.54 Aligned_cols=206 Identities=18% Similarity=0.277 Sum_probs=174.5
Q ss_pred CCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 5 KGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 5 ~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
.+++++|+||.+.+ +.++++|++|+++||||||+||.|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+
T Consensus 417 ~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll 494 (636)
T PLN03133 417 GAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVL 494 (636)
T ss_pred CceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHH
Confidence 46999999999874 5788999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHccCCCCceEEEEee-cCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcC--CCCCCCCch
Q 045376 85 NALANHKSKPRIYIGCMK-SGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNS--PILHTYANE 161 (244)
Q Consensus 85 ~~L~~~~~~~~~y~G~~~-~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~--~~~~~~~~E 161 (244)
++|......+++|+|++. ..+++|++.+|||+|... ||.+.|||||+|+|||||+++|+.|+..+ ..++.|++|
T Consensus 495 ~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~e---yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lE 571 (636)
T PLN03133 495 ASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEE---WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLE 571 (636)
T ss_pred HHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHH---CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChh
Confidence 999876666679999985 344557999999999864 89999999999999999999999998764 579999999
Q ss_pred hHHHHHHHh-----cCCCeEecCCCcccCCCCCcccccccCCccccccCcCcccccCcHHHHHHHHHhcCCCCcc
Q 045376 162 DVSLGSWFI-----GLDVEHVDDRSMCCGTPPDCEWKAKEGSVCVASFDWPCSGICNAVERMKEVHNSCGERDGA 231 (244)
Q Consensus 162 DV~iG~~l~-----~l~v~~~~~~~f~~~~~~~~~~k~~~~n~c~~~~~~~~~g~~~~~~~m~~~h~~~~~~~~~ 231 (244)
||++|+|++ |+.+++.++.+||.. .| ...+. ++ .-.+|+.|..+|+...+..++
T Consensus 572 DVyvGi~l~~l~k~gl~v~~~~~~r~~~~---~C----------~~~~i--~~-H~~sP~eM~~lW~~l~~~~~~ 630 (636)
T PLN03133 572 DVAMGIWIAEMKKEGLEVKYENDGRIYNE---GC----------KDGYV--VA-HYQSPREMLCLWQKLQEGKRA 630 (636)
T ss_pred hHhHHHHHHHhcccCCCceeeCCCcccCC---cC----------CCCeE--EE-ecCCHHHHHHHHHHHhccCCC
Confidence 999999984 778888888888753 34 32221 01 125789999999886655433
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-43 Score=318.97 Aligned_cols=208 Identities=23% Similarity=0.260 Sum_probs=174.3
Q ss_pred cCCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHH
Q 045376 4 EKGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGA 82 (244)
Q Consensus 4 ~~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~ 82 (244)
+..|+++|++|.++..+ .+++.|.+|++.|||||++||.|+|.|||+||+++++|+.+ |++++|++|+|||+|||+++
T Consensus 126 ~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~ 204 (349)
T KOG2287|consen 126 GGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDN 204 (349)
T ss_pred CCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHH
Confidence 35699999999998654 66889999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcc-CCCCceEEEEee-cCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCc
Q 045376 83 LMNALANH-KSKPRIYIGCMK-SGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYAN 160 (244)
Q Consensus 83 L~~~L~~~-~~~~~~y~G~~~-~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~ 160 (244)
|+.+|.+. .+.+.+|.|.+. ..+++|++.+|||+|+.. |+.+.|||||+|+||++|+++|+.|++++.+++.+++
T Consensus 205 L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~---y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~i 281 (349)
T KOG2287|consen 205 LLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESE---YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPI 281 (349)
T ss_pred HHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHH---CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccch
Confidence 99999998 777889999974 456667999999999963 8999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcC-CCeEecCCCcccCC--CCCcccccccCCccccccCcCcccccCcHHHHHHHHHhcCC
Q 045376 161 EDVSLGSWFIGL-DVEHVDDRSMCCGT--PPDCEWKAKEGSVCVASFDWPCSGICNAVERMKEVHNSCGE 227 (244)
Q Consensus 161 EDV~iG~~l~~l-~v~~~~~~~f~~~~--~~~~~~k~~~~n~c~~~~~~~~~g~~~~~~~m~~~h~~~~~ 227 (244)
|||++|+|++.. +++++++..+.... ...|.++. .+.+ .-.++..|..+++.|..
T Consensus 282 EDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~--------~~~~----H~~~p~e~~~~w~~~~~ 339 (349)
T KOG2287|consen 282 EDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRD--------LLAV----HRLSPNEMIYLWKKLKD 339 (349)
T ss_pred HHHHHHHHHHHhcCCCcccCcccccccccCCCCcccc--------eEEE----ecCCHHHHHHHHHHhhc
Confidence 999999999766 88887766643311 12233321 0001 11337778888777665
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.96 E-value=3.2e-29 Score=226.78 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=145.8
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecc------------------cccCCchhHHHHHHHHHhhh-CCCc
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNL------------------IEGYKKLSTKTKTYFSTAFS-IWDA 66 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~------------------~D~y~nLt~Kt~~~~~wa~~-~~~~ 66 (244)
.+.++|++|..++.+-+.+++|.+|+++|||||++|| .|++.|+|+||+++|+||.+ |+++
T Consensus 121 ~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a 200 (382)
T PTZ00210 121 SLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNV 200 (382)
T ss_pred hhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCC
Confidence 4668899999987666889999999999999999999 77788899999999999999 8999
Q ss_pred cEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecC-cccccCCCccccccccccCCCCCCCCCCccccccccCHHHH
Q 045376 67 EFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSG-PVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLA 145 (244)
Q Consensus 67 ~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~-pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv 145 (244)
+|++|+|||+|||++++++.|+.. +...+|+|.+... .+. .+.+||||+|+||+||+|+|
T Consensus 201 ~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA 261 (382)
T PTZ00210 201 SYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRYNYYNRIW------------------RRNQLTYVNGYCITLSRDTA 261 (382)
T ss_pred CeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEeeCCCCccc------------------cCCCCCccccceeeccHHHH
Confidence 999999999999999999999664 4456999986421 111 12369999999999999999
Q ss_pred HHHHHcCCC--C---------------CCCCchhHHHHHHH-hcCCCeE--ecCCCcccCCCCCcccccccCCccc--cc
Q 045376 146 AYISFNSPI--L---------------HTYANEDVSLGSWF-IGLDVEH--VDDRSMCCGTPPDCEWKAKEGSVCV--AS 203 (244)
Q Consensus 146 ~~i~~~~~~--~---------------~~~~~EDV~iG~~l-~~l~v~~--~~~~~f~~~~~~~~~~k~~~~n~c~--~~ 203 (244)
+.|++..+. + -.+..||+.+|.|+ .++..+. .-..+.|++.. .+.+. |. -.
T Consensus 262 ~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd------~~~~~-~~~~v~ 334 (382)
T PTZ00210 262 QAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHN------AGKFG-VRKSVR 334 (382)
T ss_pred HHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeecccccccee------cCCCC-Cccccc
Confidence 999876432 2 23579999999999 5554332 12344444311 01111 21 12
Q ss_pred cCcCcccccCcHHHHHHHHHhcCCCCc
Q 045376 204 FDWPCSGICNAVERMKEVHNSCGERDG 230 (244)
Q Consensus 204 ~~~~~~g~~~~~~~m~~~h~~~~~~~~ 230 (244)
++.-|-..|+. ++=..+|.+.++...
T Consensus 335 ~~sVvvHhike-~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 335 NMSVVIHHIQE-ADYEMLMDYFPEGVI 360 (382)
T ss_pred cceEEEEecCH-HHHHHHHHHhcCCCC
Confidence 22234445554 466678888776543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.55 E-value=1.9e-14 Score=126.54 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEee-cCcccccCCC
Q 045376 35 QDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMK-SGPVLYQKGM 112 (244)
Q Consensus 35 ~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~~~~~~ 112 (244)
.+++.-+...++...+++.++.+.+... ..+.+|++++|||+||++++|.++|....+..++|+|... .++...-...
T Consensus 55 ~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~ 134 (252)
T PF02434_consen 55 VHLVNPNCDAGHCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRF 134 (252)
T ss_dssp GGEEE-------------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------
T ss_pred cccccCCCcchhhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccc
Confidence 4566666666665555555555455333 4688999999999999999999999999998899999863 2333210000
Q ss_pred ccccccccccCCCCCCCCCCc-cccccccCHHHHHHHHHc--C-CCCCCC----CchhHHHHHHHhc-CCCeEecCCCcc
Q 045376 113 KYHEPEYWKFGEEGNNYFMHA-TGQIYAISKDLAAYISFN--S-PILHTY----ANEDVSLGSWFIG-LDVEHVDDRSMC 183 (244)
Q Consensus 113 kwy~~~~~~~~y~~~~yp~y~-~G~~YvlS~dlv~~i~~~--~-~~~~~~----~~EDV~iG~~l~~-l~v~~~~~~~f~ 183 (244)
....+ ...-..|+ +|+||+||+.+++.|... . ...... ..||+.||.|+.. ++|+..+.+.|+
T Consensus 135 ~~~~~--------~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fh 206 (252)
T PF02434_consen 135 NPNKS--------KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFH 206 (252)
T ss_dssp -------------------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT--
T ss_pred ccccc--------CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhc
Confidence 00001 11122344 679999999999999432 2 222222 3899999999977 899988888887
Q ss_pred cC
Q 045376 184 CG 185 (244)
Q Consensus 184 ~~ 185 (244)
.-
T Consensus 207 s~ 208 (252)
T PF02434_consen 207 SH 208 (252)
T ss_dssp -S
T ss_pred cc
Confidence 63
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=124.15 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=95.6
Q ss_pred EecccccCCchhHHHHHHHHHhhh--CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcccc
Q 045376 39 RLNLIEGYKKLSTKTKTYFSTAFS--IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHE 116 (244)
Q Consensus 39 ~~d~~D~y~nLt~Kt~~~~~wa~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~ 116 (244)
..+..|+|+++..||...|+++.. ..+++|++|+|||||+.++||..+|.+..+.+.+|+|+... +. .
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~-~~---------~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK-SY---------F 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc-cc---------c
Confidence 477889999999999999999985 57999999999999999999999999999999999998431 11 1
Q ss_pred ccccccCCCCCCCCCCccccccccCHHHHHHHHHcCC-----CCCCC--CchhHHHHHHHhcCCCeEecC
Q 045376 117 PEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSP-----ILHTY--ANEDVSLGSWFIGLDVEHVDD 179 (244)
Q Consensus 117 ~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~-----~~~~~--~~EDV~iG~~l~~l~v~~~~~ 179 (244)
. +.|- .+|+||++|+.+.+.+++... -...+ ..||+-||.||+.++|...|.
T Consensus 210 ~---------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 210 Q---------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred c---------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 1 1121 278999999999988775431 12233 399999999998888876554
No 9
>PLN03153 hypothetical protein; Provisional
Probab=98.91 E-value=6.7e-09 Score=98.35 Aligned_cols=106 Identities=22% Similarity=0.169 Sum_probs=79.1
Q ss_pred CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeec-CcccccCCCccccccccccCCCCCCCCCCccccccccC
Q 045376 63 IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKS-GPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAIS 141 (244)
Q Consensus 63 ~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~-~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS 141 (244)
.++++|++++|||||+.+++|++.|.+.++.+..|+|.... ..- . -.|+ |-..-+|+||+||
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~q-----------n-~~f~-----~~fA~GGAG~~LS 270 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSA-----------N-SYFS-----HNMAFGGGGIAIS 270 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccccc-----------c-cccc-----cccccCCceEEEc
Confidence 58999999999999999999999999999999999997531 100 0 0000 1111289999999
Q ss_pred HHHHHHHHHcCCC-C---CCCCchhHHHHHHHhcCCCeEecCCCcccC
Q 045376 142 KDLAAYISFNSPI-L---HTYANEDVSLGSWFIGLDVEHVDDRSMCCG 185 (244)
Q Consensus 142 ~dlv~~i~~~~~~-~---~~~~~EDV~iG~~l~~l~v~~~~~~~f~~~ 185 (244)
+.+++.|...... . +...-+|.-||.|+..++|...+.++|...
T Consensus 271 rPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 271 YPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred HHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 9999988765321 1 222468889999998888888788888763
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00044 Score=65.65 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=77.6
Q ss_pred ecccccCCchhHHHHH-HHHHhhh--CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcccc
Q 045376 40 LNLIEGYKKLSTKTKT-YFSTAFS--IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHE 116 (244)
Q Consensus 40 ~d~~D~y~nLt~Kt~~-~~~wa~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~ 116 (244)
+...-.|..-..|+.. .+++... .-+++|++-+-|+||||...|++.+........+|+|.--. +
T Consensus 69 ~~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~-----~------- 136 (681)
T KOG3708|consen 69 LTNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE-----D------- 136 (681)
T ss_pred ccccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh-----C-------
Confidence 3333334333444443 4556555 46899999999999999999999999887788899993110 0
Q ss_pred ccccccCCCCCCCCCCc-cccccccCHHHHHHHHHcCCCCC---CCCchhHHHHHHH---hcCCCeEe
Q 045376 117 PEYWKFGEEGNNYFMHA-TGQIYAISKDLAAYISFNSPILH---TYANEDVSLGSWF---IGLDVEHV 177 (244)
Q Consensus 117 ~~~~~~~y~~~~yp~y~-~G~~YvlS~dlv~~i~~~~~~~~---~~~~EDV~iG~~l---~~l~v~~~ 177 (244)
-++ . | .|.||+||+.++..+-.+-..-+ .-.=.|+.+|.|+ .|++.+..
T Consensus 137 -------gs~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~ 192 (681)
T KOG3708|consen 137 -------GSG-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPL 192 (681)
T ss_pred -------ccC-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccch
Confidence 011 1 5 58899999999999977643222 2245689999999 35554443
No 11
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.14 E-value=1.5 Score=36.12 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=77.4
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCC--EEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQD--FLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGAL 83 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~D--il~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L 83 (244)
.+++++|...+.+ ...+.+++-.+.+.. +......... ....|.-. +..+.+..+.+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHH
Confidence 4677777776653 222344444455553 3222221111 12344433 344555567899999999999988888
Q ss_pred HHHHHccCCCCceEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhH
Q 045376 84 MNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDV 163 (244)
Q Consensus 84 ~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV 163 (244)
...+..... +. +|.+.+. ++.|++.++.+++.+.+---. .+..+..||.
T Consensus 105 ~~l~~~~~~-~~--~~~v~~~---------------------------~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLMD-PG--VGLVTCL---------------------------CAFGKSMALRREVLDAIGGFE-AFADYLAEDY 153 (196)
T ss_pred HHHHHHhhC-CC--CCeEEee---------------------------cccCceeeeEHHHHHhccChH-HHhHHHHHHH
Confidence 777765321 11 1221110 357899999999998774321 1222347999
Q ss_pred HHHHHHhcCCCe
Q 045376 164 SLGSWFIGLDVE 175 (244)
Q Consensus 164 ~iG~~l~~l~v~ 175 (244)
.++.-+...+.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999888544433
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=93.73 E-value=1.4 Score=36.70 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=71.6
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCE--EEecccccCCch--hHHHHHHHHHhhhCCCccEEEEecCceEecHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDF--LRLNLIEGYKKL--STKTKTYFSTAFSIWDAEFYIKVDDDVHVNLG 81 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Di--l~~d~~D~y~nL--t~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~ 81 (244)
.++++.+...+.. ...+.+++-.+.+... -.+... .|. +.|..+ ++++.+..+.+|++..|||+.+.++
T Consensus 30 ~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~~a-~n~~~~~~~~d~i~~lD~D~~~~p~ 102 (228)
T PF13641_consen 30 RLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIRRP---RNPGPGGKARA-LNEALAAARGDYILFLDDDTVLDPD 102 (228)
T ss_dssp TEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-------HHHHHHHHH-HHHHHHH---SEEEEE-SSEEE-CH
T ss_pred CeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEeecC---CCCCcchHHHH-HHHHHHhcCCCEEEEECCCcEECHH
Confidence 3555555544432 2223455555556553 222221 222 234443 4555555579999999999999988
Q ss_pred HHHHHHHcc-CCCCceEEEEeecCc--ccccCCC-----ccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCC
Q 045376 82 ALMNALANH-KSKPRIYIGCMKSGP--VLYQKGM-----KYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSP 153 (244)
Q Consensus 82 ~L~~~L~~~-~~~~~~y~G~~~~~p--v~~~~~~-----kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~ 153 (244)
-|...+... .+.-....|.+...+ ....... .|+... ......... .++.|++.++.+++++.+-.-..
T Consensus 103 ~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 103 WLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALGV--AFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp HHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B------S-B--TEEEEEHHHHHHH-S--S
T ss_pred HHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccce--eeccCcEEEEEHHHHHHhCCCCC
Confidence 888877765 233233334332111 0000001 111110 000111111 34579999999999998853222
Q ss_pred CCCCCCchhHHHHHHHhcCCCe
Q 045376 154 ILHTYANEDVSLGSWFIGLDVE 175 (244)
Q Consensus 154 ~~~~~~~EDV~iG~~l~~l~v~ 175 (244)
....||..++.-+...+.+
T Consensus 180 ---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 180 ---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---SSSSHHHHHHHHHHHTT--
T ss_pred ---CCcccHHHHHHHHHHCCCc
Confidence 3446999999988555443
No 13
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=93.42 E-value=0.12 Score=42.73 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCC-CCceEEEEeecCcccccCCCccccccccccC---C
Q 045376 49 LSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKS-KPRIYIGCMKSGPVLYQKGMKYHEPEYWKFG---E 124 (244)
Q Consensus 49 Lt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~---y 124 (244)
...|+-.......+..+.++++..|+|+.|+++-|...+..... .-.+-.|.....|.. ......+.-...+. +
T Consensus 15 ~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 15 CNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR--GFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred CChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc--CHHHHHHHHHHhHHHHHH
Confidence 34676666555443378999999999999999988888876543 222222211111110 00000111000000 0
Q ss_pred CCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCCCeEe
Q 045376 125 EGNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLDVEHV 177 (244)
Q Consensus 125 ~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~~ 177 (244)
..-.-.+++.|+.+++.+++++.+--- ..+..+--||..+|..+...+.+..
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 001235678999999999999876311 1233356999999999966665543
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.38 E-value=0.81 Score=42.19 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=83.1
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCC--EEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQD--FLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGAL 83 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~D--il~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L 83 (244)
.++++++...+.+ +. .+.+++=.+.|.+ +..+ ....-.....|.-+..+ +.+..+.++++.+|+|+.+.++.|
T Consensus 70 ~~EIivvdd~s~D--~t-~~iv~~~~~~~p~~~i~~v-~~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD--PA-LAVVRRLRADFPDADIDLV-IDARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC--cH-HHHHHHHHHhCCCCceEEE-ECCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 4677776665543 22 2233333455666 3223 11111223457655544 344568999999999999999988
Q ss_pred HHHHHccCCCCceEEEEe-ecCcc--cccC-----CCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCC
Q 045376 84 MNALANHKSKPRIYIGCM-KSGPV--LYQK-----GMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPIL 155 (244)
Q Consensus 84 ~~~L~~~~~~~~~y~G~~-~~~pv--~~~~-----~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~ 155 (244)
.+.+.......--.+++. ...+. .... ..-++.|... ..... .-+.+|.|+..++.+++.+.+---.. +
T Consensus 145 ~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~-~ 221 (373)
T TIGR03472 145 RQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVM-VARAL-GRARFCFGATMALRRATLEAIGGLAA-L 221 (373)
T ss_pred HHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHH-HHHhc-cCCccccChhhheeHHHHHHcCChHH-h
Confidence 888776532221122221 11110 0000 0001111100 00000 11345789999999999988743221 1
Q ss_pred CCCCchhHHHHHHHhcCCC
Q 045376 156 HTYANEDVSLGSWFIGLDV 174 (244)
Q Consensus 156 ~~~~~EDV~iG~~l~~l~v 174 (244)
.....||+.+|.-+...+.
T Consensus 222 ~~~~~ED~~l~~~i~~~G~ 240 (373)
T TIGR03472 222 AHHLADDYWLGELVRALGL 240 (373)
T ss_pred cccchHHHHHHHHHHHcCC
Confidence 2223699999999954443
No 15
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.73 E-value=2.5 Score=35.33 Aligned_cols=158 Identities=12% Similarity=-0.017 Sum_probs=77.8
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
..+++.+-+.+.+ ...+.++...+++..+....-... ... ..++.+.+..+.+|++.+|+|..+.++-|.+
T Consensus 31 ~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~ 101 (249)
T cd02525 31 LIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYILE 101 (249)
T ss_pred ccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHHH
Confidence 3455555544432 223444444444444444432221 121 3456666655899999999999999888888
Q ss_pred HHHccCCCC-ceEEEEeec---Ccccc----cCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCC
Q 045376 86 ALANHKSKP-RIYIGCMKS---GPVLY----QKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHT 157 (244)
Q Consensus 86 ~L~~~~~~~-~~y~G~~~~---~pv~~----~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~ 157 (244)
.+......+ .+..|.... .+... .....+.....+ +.......-.++.|++.++++++.+.+.-.... .
T Consensus 102 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~ 178 (249)
T cd02525 102 LVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSA-YRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES--L 178 (249)
T ss_pred HHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcc-ccccccccccccccccceEEHHHHHHhCCCCcc--c
Confidence 776543323 234444321 11100 000000000000 000000101135678888999998876432222 2
Q ss_pred CCchhHHHHHHHhcCCCe
Q 045376 158 YANEDVSLGSWFIGLDVE 175 (244)
Q Consensus 158 ~~~EDV~iG~~l~~l~v~ 175 (244)
...||..++.-+...+.+
T Consensus 179 ~~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 179 VRNEDAELNYRLRKAGYK 196 (249)
T ss_pred CccchhHHHHHHHHcCcE
Confidence 347999988766544433
No 16
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.44 E-value=2.6 Score=32.62 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCccEEEEecCceEecHHHHHHHHHccCCCCc-eEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCH
Q 045376 64 WDAEFYIKVDDDVHVNLGALMNALANHKSKPR-IYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISK 142 (244)
Q Consensus 64 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~-~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~ 142 (244)
.+.+|++..|||..+.++.+...+......+. ..++.. +.|++.++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 121 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLVRR 121 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEeeeH
Confidence 38999999999999998888877764322221 111211 4688899999
Q ss_pred HHHHHHHHcCCCCCCCCchhHHHHHHH--hcCCCeEe
Q 045376 143 DLAAYISFNSPILHTYANEDVSLGSWF--IGLDVEHV 177 (244)
Q Consensus 143 dlv~~i~~~~~~~~~~~~EDV~iG~~l--~~l~v~~~ 177 (244)
++++.+-.-...... ..||..+..-+ .|..+...
T Consensus 122 ~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~ 157 (166)
T cd04186 122 EVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYV 157 (166)
T ss_pred HHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEc
Confidence 988876432222222 56888877666 45555443
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.86 E-value=2.3 Score=35.09 Aligned_cols=163 Identities=15% Similarity=-0.004 Sum_probs=80.7
Q ss_pred eEEEEEeeeCCCCCchhHHHHHHHHhh--CCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 7 IVIRFVIGHSAKPGGVLDKGIDAEDAE--HQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 7 v~v~FvlG~~~~~~~~~~~~l~~E~~~--~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
+.++.|-..+.+ ...+.++ +... +..+..+...... |. -|. ..++++.+..+.+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~-~~~~~~~~~v~~~~~~~~~-~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILE-FAAAKPNFQLKILNNSRVS-IS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHH-HHHhCCCcceEEeeccCcc-cc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 566666555432 2223343 2323 3345555554422 22 233 234555555678999999999999988888
Q ss_pred HHHHccCC-CCceEEEEeecCcc---ccc-CCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCC
Q 045376 85 NALANHKS-KPRIYIGCMKSGPV---LYQ-KGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYA 159 (244)
Q Consensus 85 ~~L~~~~~-~~~~y~G~~~~~pv---~~~-~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~ 159 (244)
..+..... ....+.|.....+. ... ....+..............++..+.|++.++++++...+---... ....
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-cccc
Confidence 87764432 22344554321110 000 000000000000001122345556799999999999887433222 2234
Q ss_pred chhHHHHHHH--hcC-CCeEe
Q 045376 160 NEDVSLGSWF--IGL-DVEHV 177 (244)
Q Consensus 160 ~EDV~iG~~l--~~l-~v~~~ 177 (244)
.||..++.-+ .|. .+...
T Consensus 181 ~eD~~~~~~~~~~g~~~~~~~ 201 (229)
T cd04192 181 SGDDELLLAKVASKYPKVAYL 201 (229)
T ss_pred cCCHHHHHHHHHhCCCCEEEe
Confidence 6776665544 454 44443
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.94 E-value=1.1 Score=37.34 Aligned_cols=117 Identities=12% Similarity=0.018 Sum_probs=64.6
Q ss_pred HHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCce--EEEEee--c-Cc---ccccC--CCcccccc-ccccCCCC
Q 045376 58 STAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRI--YIGCMK--S-GP---VLYQK--GMKYHEPE-YWKFGEEG 126 (244)
Q Consensus 58 ~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~--~-~p---v~~~~--~~kwy~~~-~~~~~y~~ 126 (244)
..+.+..+.+|++..|+|+++.++.|.+.+......+.+ ..|... . .+ ..+.. ....+... .+ .. .
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 153 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQP--GR-D 153 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHH--HH-h
Confidence 444444488999999999999998888887765432332 222211 1 10 00000 00000000 00 00 0
Q ss_pred CCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcC--CCeEecCC
Q 045376 127 NNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGL--DVEHVDDR 180 (244)
Q Consensus 127 ~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l--~v~~~~~~ 180 (244)
.....++.|++.++++++.+.+..-. ..+..||..++.-+... .+..+++.
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~ 206 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEP 206 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCc
Confidence 11245568999999999998874322 23448999999888544 44444443
No 19
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=90.65 E-value=1.3 Score=36.20 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=65.1
Q ss_pred EEEEecCceEecHHHHHHHHHccCCCCceEE--EEeecCcccccCCCccccccc-ccc-----CCCCCCCCCCccccccc
Q 045376 68 FYIKVDDDVHVNLGALMNALANHKSKPRIYI--GCMKSGPVLYQKGMKYHEPEY-WKF-----GEEGNNYFMHATGQIYA 139 (244)
Q Consensus 68 fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~--G~~~~~pv~~~~~~kwy~~~~-~~~-----~y~~~~yp~y~~G~~Yv 139 (244)
||+-+|+|+-+..+-|.+.+.... .+++-+ |.....+. ...-.++...+. +.. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999988888777655 333222 22221000 000011111110 000 00112346668899999
Q ss_pred cCHHHHHHHHHcCCCCCCCCchhHHHHHHH--hcCCCeEecCCCcccCCC
Q 045376 140 ISKDLAAYISFNSPILHTYANEDVSLGSWF--IGLDVEHVDDRSMCCGTP 187 (244)
Q Consensus 140 lS~dlv~~i~~~~~~~~~~~~EDV~iG~~l--~~l~v~~~~~~~f~~~~~ 187 (244)
+++++++.+.--. -.....||..++.=+ +|..+..+++....+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875322 234457999998877 455666666664444333
No 20
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.55 E-value=4.9 Score=30.68 Aligned_cols=94 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCc--eEEEEeec--C--ccccc-CCCcccccccccc-CCCCC
Q 045376 56 YFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPR--IYIGCMKS--G--PVLYQ-KGMKYHEPEYWKF-GEEGN 127 (244)
Q Consensus 56 ~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--~y~G~~~~--~--pv~~~-~~~kwy~~~~~~~-~y~~~ 127 (244)
..+++.+..+.+|++.+|+|..+....|.+.+......+. +..|.... . ..... ...++........ .....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3445555458999999999999998877777444433232 33333321 1 11100 0001111110000 00012
Q ss_pred CCCCCccccccccCHHHHHHHH
Q 045376 128 NYFMHATGQIYAISKDLAAYIS 149 (244)
Q Consensus 128 ~yp~y~~G~~YvlS~dlv~~i~ 149 (244)
..+..+.|.+++++++++..+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678999999999988764
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=90.16 E-value=1.8 Score=33.23 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=64.5
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
...+.+|-..+. +...+.+++-.+....+..+...+.. .+..-...+++. ...+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKH----AKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH------SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-cccccccccccc----cceeEEEEeCCCceEcHHHHHH
Confidence 445544444442 23333444444435566666666554 333333334444 3455999999999998776665
Q ss_pred HHHccCC-CCceEEEEee--cCcccc-cCCC---ccccccccccCCCCCCCCCCccccccccCHHHHHHH
Q 045376 86 ALANHKS-KPRIYIGCMK--SGPVLY-QKGM---KYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYI 148 (244)
Q Consensus 86 ~L~~~~~-~~~~y~G~~~--~~pv~~-~~~~---kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i 148 (244)
++..... ...+.+|... ...... .... .+..............-.+++.|++-++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 5554433 3345555542 111110 0110 011110000001112334567888999999888764
No 22
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=89.76 E-value=3 Score=38.59 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=80.9
Q ss_pred eEEEEEeeeCCCCCchhHHHHHHH-HhhCC---CEEEecccccCCchhHHH---HHHHHHhhh-CCCccEEEEecCceEe
Q 045376 7 IVIRFVIGHSAKPGGVLDKGIDAE-DAEHQ---DFLRLNLIEGYKKLSTKT---KTYFSTAFS-IWDAEFYIKVDDDVHV 78 (244)
Q Consensus 7 v~v~FvlG~~~~~~~~~~~~l~~E-~~~~~---Dil~~d~~D~y~nLt~Kt---~~~~~wa~~-~~~~~fvlK~DDD~fV 78 (244)
+++++|-..+.+. . .++.++ .+++. .+..+...+.-.+-.-|. ..+++.+.. ..+.+|++.+|+|+.+
T Consensus 71 ~eIIVVDd~StD~--T--~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 71 LHVILVDDHSTDG--T--ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred eEEEEEeCCCCCc--H--HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 5666666655432 2 233333 23333 344444322212223443 335555554 4458999999999999
Q ss_pred cHHHHHHHHHccCCCC-ceEEEEeecCcccccCCCccccc-----------cccccCCCCCCCCCCccccccccCHHHHH
Q 045376 79 NLGALMNALANHKSKP-RIYIGCMKSGPVLYQKGMKYHEP-----------EYWKFGEEGNNYFMHATGQIYAISKDLAA 146 (244)
Q Consensus 79 n~~~L~~~L~~~~~~~-~~y~G~~~~~pv~~~~~~kwy~~-----------~~~~~~y~~~~yp~y~~G~~YvlS~dlv~ 146 (244)
.++.|.+.+......+ .+..|...... .....+...+ ..| ...+ ......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRW-VNDP-RRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhh-hcCC-CccceeecceEEEEEHHHHH
Confidence 9888888776543322 23222221100 0000000000 000 0001 11234467999999999998
Q ss_pred HHHHcCCCCCCCCchhHHHHHHHh--cCCCeE
Q 045376 147 YISFNSPILHTYANEDVSLGSWFI--GLDVEH 176 (244)
Q Consensus 147 ~i~~~~~~~~~~~~EDV~iG~~l~--~l~v~~ 176 (244)
.+--.... .....||+.++.-+. |..+..
T Consensus 223 ~vGGf~~~-~~~~~ED~~L~~r~~~~G~~v~~ 253 (384)
T TIGR03469 223 RIGGIAAI-RGALIDDCTLAAAVKRSGGRIWL 253 (384)
T ss_pred HcCCHHHH-hhCcccHHHHHHHHHHcCCcEEE
Confidence 87322111 122479999999885 444444
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.28 E-value=10 Score=33.40 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEE-EEee--cC-cccccCC-------Cccccccccc----
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYI-GCMK--SG-PVLYQKG-------MKYHEPEYWK---- 121 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~-G~~~--~~-pv~~~~~-------~kwy~~~~~~---- 121 (244)
.+.+.+....+|++..|+|+.+.++-|..++......+...+ |.+. .+ ....... ..|.....|.
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 334444456899999999999988777777665433333322 2221 00 0000000 0111000000
Q ss_pred ----cCCC-CCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHH--HhcCCCeEecC
Q 045376 122 ----FGEE-GNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSW--FIGLDVEHVDD 179 (244)
Q Consensus 122 ----~~y~-~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~--l~~l~v~~~~~ 179 (244)
...+ .....++++|++.++++++...+---...+..+..||+-+..= ..|..+..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~ 219 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence 0000 1123456789999999999998865444555555799876544 46665544333
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.77 E-value=13 Score=30.06 Aligned_cols=154 Identities=12% Similarity=0.003 Sum_probs=76.9
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCC-EEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQD-FLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~D-il~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
.+.+++|-..+.+ + ....+++-.++++. +.......+ ....... ..+....+.+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~d--~-t~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~----n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGSTD--G-TVEIIKEYIDKDPFIIILIRNGKN-LGVARNF----ESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCCC--C-cHHHHHHHHhcCCceEEEEeCCCC-ccHHHHH----HHHHHhCCCCEEEEECCCcccChhHHH
Confidence 4566666554442 2 22334444444432 333333222 2222222 223445689999999999999988888
Q ss_pred HHHHc-cCC-CCceEEEEee----cCcccccCCCcccccccc--ccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCC
Q 045376 85 NALAN-HKS-KPRIYIGCMK----SGPVLYQKGMKYHEPEYW--KFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILH 156 (244)
Q Consensus 85 ~~L~~-~~~-~~~~y~G~~~----~~pv~~~~~~kwy~~~~~--~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~ 156 (244)
+.+.. ... ...++.|.+. .++.... ........ ...+..........|++.++.+++++.+.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~- 174 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIGE---SFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDAD- 174 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCccc---ccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhccccccc-
Confidence 87775 222 2234444331 1121110 00000000 00000001224457889999999998875433322
Q ss_pred CCCchhHHHHHHHhcC
Q 045376 157 TYANEDVSLGSWFIGL 172 (244)
Q Consensus 157 ~~~~EDV~iG~~l~~l 172 (244)
...||..+...+...
T Consensus 175 -~~~~D~~~~~~~~~~ 189 (214)
T cd04196 175 -VIMHDWWLALLASAF 189 (214)
T ss_pred -cccchHHHHHHHHHc
Confidence 457888877766443
No 25
>PRK11204 N-glycosyltransferase; Provisional
Probab=87.16 E-value=9.6 Score=35.33 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=76.8
Q ss_pred HHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeec
Q 045376 24 DKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKS 103 (244)
Q Consensus 24 ~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~ 103 (244)
.+.+++..+++..+..++..++ .. |. ..++.+.+..+.+|++..|+|+.+.++.|.+.+......++ +|.+..
T Consensus 98 ~~~l~~~~~~~~~v~~i~~~~n---~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~--v~~v~g 170 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIHLAEN---QG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR--VGAVTG 170 (420)
T ss_pred HHHHHHHHHhCCcEEEEEcCCC---CC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC--eEEEEC
Confidence 3445555556666665554332 22 43 23455555568899999999999999988887766533333 233322
Q ss_pred CcccccCCC---ccccccccc-cCC---CCC--CCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHh--cC
Q 045376 104 GPVLYQKGM---KYHEPEYWK-FGE---EGN--NYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFI--GL 172 (244)
Q Consensus 104 ~pv~~~~~~---kwy~~~~~~-~~y---~~~--~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~--~l 172 (244)
.+...++.+ +....++.. ++. ... ..+...+|++.+++++++..+--- -.....||+-++.-+. |.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~G~ 247 (420)
T PRK11204 171 NPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLRGW 247 (420)
T ss_pred CceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHcCC
Confidence 121111110 000000000 000 000 112234788899999998876321 1223479999988884 44
Q ss_pred CCeEecC
Q 045376 173 DVEHVDD 179 (244)
Q Consensus 173 ~v~~~~~ 179 (244)
.+...++
T Consensus 248 ~i~~~p~ 254 (420)
T PRK11204 248 DIRYEPR 254 (420)
T ss_pred eEEeccc
Confidence 4444433
No 26
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=84.38 E-value=9.9 Score=30.35 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=71.8
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
.+.++.|-+.+.+ + ....++...+++..+..+.....+. |. .+++.+.+....+|++.+|+|....++.|..
T Consensus 29 ~~eiivvdd~s~d--~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD--R-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc--c-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4566666555542 2 2233444445566666665544322 21 2334444444569999999999998877777
Q ss_pred HHHccCCCCceEEEEeec--CcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcC
Q 045376 86 ALANHKSKPRIYIGCMKS--GPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNS 152 (244)
Q Consensus 86 ~L~~~~~~~~~y~G~~~~--~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~ 152 (244)
.+....+...+.+|.... .+....-..+.+.... ........+...|+..++++++++.+..-.
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d 166 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLI---NKLSGVDIPDNGGDFRLMDRKVVDALLLLP 166 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHH---HHHcCCCCCCCCCCEEEEcHHHHHHHHhcC
Confidence 776644444566665431 1110000001110000 000112334467888999999999886543
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.01 E-value=21 Score=28.90 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHHHccC-CCCceEEEEeecCcccccCCCccccccccccCCCCCCC
Q 045376 51 TKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHK-SKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNY 129 (244)
Q Consensus 51 ~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~y 129 (244)
.-.-.+++++. ..+.+|++..|+|..+..+.|...+.... +.-.+..|... ... +
T Consensus 66 ~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~--------------~--- 121 (202)
T cd04185 66 GGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------DPD--------------G--- 121 (202)
T ss_pred hHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------cCC--------------C---
Confidence 33445566666 56889999999999999887777665543 11112222110 000 0
Q ss_pred CCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHh--cCCCeEecCCCc
Q 045376 130 FMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFI--GLDVEHVDDRSM 182 (244)
Q Consensus 130 p~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~--~l~v~~~~~~~f 182 (244)
.+++.++++++++.+--...... ...||+.++.-+. |..+ ......+
T Consensus 122 ----~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i-~~~~~~~ 170 (202)
T cd04185 122 ----SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVV 170 (202)
T ss_pred ----ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcCCcE-EecceEE
Confidence 23557899988887732222222 3469999888774 5445 4333333
No 28
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=83.23 E-value=2.6 Score=34.95 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=21.4
Q ss_pred ccccccccCHHHHHHHHHcCCCCCCCCch
Q 045376 133 ATGQIYAISKDLAAYISFNSPILHTYANE 161 (244)
Q Consensus 133 ~~G~~YvlS~dlv~~i~~~~~~~~~~~~E 161 (244)
++.+||+||+..|+.|.+....+. ++.|
T Consensus 170 ~~t~aY~Is~~gA~kLL~~~~~~~-~pvD 197 (200)
T PF01755_consen 170 YGTCAYLISRKGARKLLEASKPIR-LPVD 197 (200)
T ss_pred CcceeeeeCHHHHHHHHHhCcCCC-ccCc
Confidence 456899999999999998875544 4444
No 29
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=82.36 E-value=1.4 Score=38.82 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=38.1
Q ss_pred cccccccCHHHHHHHHHcCC----CCCCCCchhHHHHHHHhcCCCeEecCCCccc
Q 045376 134 TGQIYAISKDLAAYISFNSP----ILHTYANEDVSLGSWFIGLDVEHVDDRSMCC 184 (244)
Q Consensus 134 ~G~~YvlS~dlv~~i~~~~~----~~~~~~~EDV~iG~~l~~l~v~~~~~~~f~~ 184 (244)
+|+|++||..+|+.|.+... ..+.+.--|--|..|+..++|.....++|..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999987632 2344445788899999767766555666654
No 30
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.92 E-value=9 Score=30.40 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=56.1
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCccccccccccCCCCCCCCCCcccc
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQ 136 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~ 136 (244)
++.+.+....+|++..|+|..+.++-|.+.+....+ .....|... ..+.. .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~----~~~~~----------------~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV----LLNEK----------------LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee----ecccc----------------cceeEeccc
Confidence 344555567899999999999998888777766522 222233211 00000 000223577
Q ss_pred ccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC
Q 045376 137 IYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD 173 (244)
Q Consensus 137 ~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 173 (244)
.+++.+..+..+.--......+..||+-++.=+...+
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7788888777543333333334579998887774444
No 31
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.83 E-value=28 Score=28.82 Aligned_cols=146 Identities=15% Similarity=0.047 Sum_probs=71.7
Q ss_pred CCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHH---HccCCCCce-EEEEeecCccccc
Q 045376 34 HQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNAL---ANHKSKPRI-YIGCMKSGPVLYQ 109 (244)
Q Consensus 34 ~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L---~~~~~~~~~-y~G~~~~~pv~~~ 109 (244)
...+..+....+.. ...-.-.+++.+... +++|++..|+|+.+.++.|...+ ......+.+ .+|..........
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 34555555444322 444444566665543 78999999999999988888875 322222322 2233210000000
Q ss_pred CCCccccccc----cccCCCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHh--cCCCeEecCCCc
Q 045376 110 KGMKYHEPEY----WKFGEEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFI--GLDVEHVDDRSM 182 (244)
Q Consensus 110 ~~~kwy~~~~----~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~--~l~v~~~~~~~f 182 (244)
....+..... .........-..++.|++.++++++.+.+---...+ .+..||+.++.-+. |..+....+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 0000000000 000000001123345778889999888874322222 23468999888774 444444444333
No 32
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.41 E-value=15 Score=33.84 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=91.3
Q ss_pred eEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHH
Q 045376 7 IVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNA 86 (244)
Q Consensus 7 v~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~ 86 (244)
..+..|...+. ++.-+.+.+-.++++..+.+... .+-...-...+.++....+.++++..|-|+.+..+.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 45566665443 23334455556666544444422 1112222345667776667999999999999999999998
Q ss_pred HHccCCCCce-EEEEee--cCcccccCCCcccccccc-----ccCCC-CCCCCCCccccccccCHHHHHHHHHcCCCCCC
Q 045376 87 LANHKSKPRI-YIGCMK--SGPVLYQKGMKYHEPEYW-----KFGEE-GNNYFMHATGQIYAISKDLAAYISFNSPILHT 157 (244)
Q Consensus 87 L~~~~~~~~~-y~G~~~--~~pv~~~~~~kwy~~~~~-----~~~y~-~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~ 157 (244)
+......+.. ..|... .++.......+-..-++. ..... .......+.|++.++.+++++.+- .....
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~~ 235 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG---GWLED 235 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC---CCCCC
Confidence 8876544333 333221 111000000000000000 00000 112467789999999999998886 23344
Q ss_pred CCchhHHHHHHHh--cCCCeEecCC
Q 045376 158 YANEDVSLGSWFI--GLDVEHVDDR 180 (244)
Q Consensus 158 ~~~EDV~iG~~l~--~l~v~~~~~~ 180 (244)
.--||..+|..+. |..+..+++.
T Consensus 236 ~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 236 TITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred ceeccHHHHHHHHHCCCeEEEeecc
Confidence 4579999999995 4455555443
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.36 E-value=13 Score=29.50 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=60.2
Q ss_pred HHHHhhhCCCccEEEEecCceEecHHHHHHHHHcc--CCCCceEEEEee--cCcccccCCCccccccccccCCCCCCCCC
Q 045376 56 YFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANH--KSKPRIYIGCMK--SGPVLYQKGMKYHEPEYWKFGEEGNNYFM 131 (244)
Q Consensus 56 ~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~y~G~~~--~~pv~~~~~~kwy~~~~~~~~y~~~~yp~ 131 (244)
.++.+.+..+.+|++..|+|..+..+.+...+... .+...+..|... .+... ....+..... . ...-....
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~-~---~~~~~~~~ 140 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPF-L---DKFLLYGM 140 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcch-h---hhHHhhcC
Confidence 34445554578999999999999988888877333 223345555532 11110 0011100011 0 00112234
Q ss_pred CccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC
Q 045376 132 HATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD 173 (244)
Q Consensus 132 y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 173 (244)
+..|++.++++++.+.+-.-...+ ...||.-+..-+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g 180 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAG 180 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcC
Confidence 456788899999998874322222 2357877766664443
No 34
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.41 E-value=20 Score=28.85 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCC--ceEEEEeec--CcccccCCCcccccccc--ccCCCCCCCC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKP--RIYIGCMKS--GPVLYQKGMKYHEPEYW--KFGEEGNNYF 130 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~--~~y~G~~~~--~pv~~~~~~kwy~~~~~--~~~y~~~~yp 130 (244)
++.+.+..+.+|++..|+|..+.++.|...+......+ .+..|.+.. ..... ...+. .+... ...+....-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~- 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFARRRS- 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhccCC-
Confidence 44445545789999999999999888888777643222 244444321 11100 00000 11100 000100011
Q ss_pred CCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHh--cCCCeEecC
Q 045376 131 MHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFI--GLDVEHVDD 179 (244)
Q Consensus 131 ~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~--~l~v~~~~~ 179 (244)
+ ..|++.++.++++..+-. .-.....||..+..-+. |..+.++++
T Consensus 149 ~-~~~~~~~~rr~~~~~~g~---~~~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 149 P-FNHPTVMFRKSKVLAVGG---YQDLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred C-CCChHHhhhHHHHHHcCC---cCCCCCchHHHHHHHHHHcCCceecccH
Confidence 1 245667777777665422 11225699999888874 555555443
No 35
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=79.87 E-value=37 Score=32.04 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=82.2
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
+++++.|-..+. + ...+.+++..+++..+........ .. |. ..++.+.+..+.+|++..|.|..+.++.|.+
T Consensus 104 ~~eIivVdDgs~--D-~t~~~~~~~~~~~~~v~vv~~~~n---~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS--D-DTAQVLDALLAEDPRLRVIHLAHN---QG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC--c-cHHHHHHHHHHhCCCEEEEEeCCC---CC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 455544444333 2 223445555556666554443222 21 33 3455555656899999999999999998888
Q ss_pred HHHccCCCCceEEEEeecCcccccCC---Cccccccccc-cCC--C-CCCC--CCCccccccccCHHHHHHHHHcCCCCC
Q 045376 86 ALANHKSKPRIYIGCMKSGPVLYQKG---MKYHEPEYWK-FGE--E-GNNY--FMHATGQIYAISKDLAAYISFNSPILH 156 (244)
Q Consensus 86 ~L~~~~~~~~~y~G~~~~~pv~~~~~---~kwy~~~~~~-~~y--~-~~~y--p~y~~G~~YvlS~dlv~~i~~~~~~~~ 156 (244)
.+......++ +|.+...|..+++. .+....++.. ++. + ...| +..++|.+.++.+++++.+--.. +
T Consensus 176 lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~ 250 (444)
T PRK14583 176 LVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---P 250 (444)
T ss_pred HHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---C
Confidence 7765432233 24333222211111 1111111000 000 0 0011 12347888899999988763221 2
Q ss_pred CCCchhHHHHHHHh--cCCCeEec
Q 045376 157 TYANEDVSLGSWFI--GLDVEHVD 178 (244)
Q Consensus 157 ~~~~EDV~iG~~l~--~l~v~~~~ 178 (244)
..-.||.-+|.-+. |-.+....
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p 274 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEP 274 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEee
Confidence 23479999998885 44444443
No 36
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=78.27 E-value=25 Score=29.58 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCC-CCceEEEEeec-CcccccCCCc--cccccccccCCC-CCCCCC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKS-KPRIYIGCMKS-GPVLYQKGMK--YHEPEYWKFGEE-GNNYFM 131 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~y~G~~~~-~pv~~~~~~k--wy~~~~~~~~y~-~~~yp~ 131 (244)
++.+.+..+.+|++.+|+|+.+..+-|.+.+..... ...+..|.... .+........ |.....+. ... ....+.
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 179 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLK-RAESRLGSTV 179 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHH-HHHHhcCCee
Confidence 344444456799999999999998777777776542 22334444321 1100000001 10000000 000 011233
Q ss_pred CccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC
Q 045376 132 HATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD 173 (244)
Q Consensus 132 y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 173 (244)
.+.|+++++.+++.. ........||..++.-+...+
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G 215 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQG 215 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcC
Confidence 457777778877666 111223479999988885544
No 37
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=77.86 E-value=24 Score=29.23 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=77.1
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
..++++|...+.+ .....| ++...+..+....- +. . -|..+ +..+.+..+.+|++.+|+|+.+.++.|.+
T Consensus 28 ~~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~~~-~~-~---g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVITV-PH-P---GKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCCh---HHHHHH-HhhccCCcEEEEec-CC-C---ChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 3455555554432 222233 34556666666542 22 1 23322 23333445899999999999999999888
Q ss_pred HHHccCCCCce--EEEEee--cC--cccccCCCccccccccc---cCCCCCCCCCCccccccccCHHHHHHHHHcCC---
Q 045376 86 ALANHKSKPRI--YIGCMK--SG--PVLYQKGMKYHEPEYWK---FGEEGNNYFMHATGQIYAISKDLAAYISFNSP--- 153 (244)
Q Consensus 86 ~L~~~~~~~~~--y~G~~~--~~--pv~~~~~~kwy~~~~~~---~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~--- 153 (244)
.+.... .+.+ ..|... .. .+.......++...... ..... .-...+.|+..++.+++++.+.-...
T Consensus 98 l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~rr~~l~~~~~~~~~~~ 175 (235)
T cd06434 98 MLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYD-GGVPCLSGRTAAYRTEILKDFLFLEEFTN 175 (235)
T ss_pred HHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhC-CCEEEccCcHHHHHHHHHhhhhhHHHhhh
Confidence 887765 3332 112211 00 00000000000000000 00000 00123568888888888876532211
Q ss_pred ----CCCCCCchhHHHHHHHhcCCC
Q 045376 154 ----ILHTYANEDVSLGSWFIGLDV 174 (244)
Q Consensus 154 ----~~~~~~~EDV~iG~~l~~l~v 174 (244)
..+....||..++.-+...+.
T Consensus 176 ~~~~~~~~~~~eD~~l~~~~~~~g~ 200 (235)
T cd06434 176 ETFMGRRLNAGDDRFLTRYVLSHGY 200 (235)
T ss_pred hhhcCCCCCcCchHHHHHHHHHCCC
Confidence 123446799999887754443
No 38
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=76.62 E-value=48 Score=28.69 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=36.6
Q ss_pred hhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHHHcc
Q 045376 32 AEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANH 90 (244)
Q Consensus 32 ~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~ 90 (244)
+.+..|..+...++. ....=.-.++++|.+ .+++|++..|||+.+..+.|...+...
T Consensus 42 ~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 42 LRGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred ccCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 344556555544332 122223346677764 378999999999999988777776654
No 39
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=73.36 E-value=52 Score=27.34 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcccc-----cccccc------CCC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHE-----PEYWKF------GEE 125 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~-----~~~~~~------~y~ 125 (244)
++.+.+..+.+|++.+|.|+.+.++.|.+.+.... .+. +|.+.......++...|.. +..+.+ .+.
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 45555556899999999999999998888554332 232 2332211100111111110 000000 000
Q ss_pred CCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcC--CCeEecC
Q 045376 126 GNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGL--DVEHVDD 179 (244)
Q Consensus 126 ~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l--~v~~~~~ 179 (244)
. .....+.|++-++.++++..+---. .....||+.++.-+... .+..+.+
T Consensus 156 ~-~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 156 T-GLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred c-CCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEecc
Confidence 1 1111235666678888887763211 12347999998888544 4444443
No 40
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=73.00 E-value=53 Score=27.23 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHHHhhhC--CCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcccccc-ccc----c--CCCC
Q 045376 56 YFSTAFSI--WDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPE-YWK----F--GEEG 126 (244)
Q Consensus 56 ~~~wa~~~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~-~~~----~--~y~~ 126 (244)
.+.++.+. .+.+|++..|+|+.+.++.|...+.... .+. +|.+.......+....++... .|. + +.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45565552 3579999999999999998888887653 222 232211000111111111000 000 0 0000
Q ss_pred -CC-CCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCCC
Q 045376 127 -NN-YFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLDV 174 (244)
Q Consensus 127 -~~-yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~v 174 (244)
.. -...+.|++.+++++++..+---.. .+..||+-++.=+...+.
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~ 196 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGY 196 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCc
Confidence 00 0124678888999999988743222 235899999887754443
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=67.21 E-value=59 Score=25.56 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=69.3
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
...+..+-..+.+ .....+..-.+++..+..+....... .. ..+..+.+....+|++..|+|..+.++.|.+
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~~~~~n~G-~~----~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVIRLSRNFG-KG----AAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEEEccCCCC-cc----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 3444444444332 23345555566666665555554432 11 3334444444559999999999999988888
Q ss_pred HHHc-cCCCCceEEEEee--cC----cccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHH
Q 045376 86 ALAN-HKSKPRIYIGCMK--SG----PVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYIS 149 (244)
Q Consensus 86 ~L~~-~~~~~~~y~G~~~--~~----pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~ 149 (244)
++.. ......+..|... .+ +..+ ....+...... ......-.....|+.+++++++.+.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLR-RLGSRLFNFLI--RLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHH-HHHHHHHHHHH--HHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8876 3444456666532 11 1100 00000000000 000111122346777899999999885
No 42
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.86 E-value=71 Score=25.54 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=56.2
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccC--CCCceEEEEee---cCcccccCCCccccccccccCCCCCC-CC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHK--SKPRIYIGCMK---SGPVLYQKGMKYHEPEYWKFGEEGNN-YF 130 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~~y~G~~~---~~pv~~~~~~kwy~~~~~~~~y~~~~-yp 130 (244)
++.+.+..+.+|++..|+|..+.++.|...++... +...+..+... ..... ...++.+. |. ... +.
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~-~~----~~~~~~ 146 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKR---SEPFFKPD-WS----PDLLLS 146 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCE---eccccCCC-CC----HHHhhh
Confidence 44444445679999999999999988888777652 22223323221 00000 00111111 11 011 11
Q ss_pred CCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCCCe
Q 045376 131 MHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLDVE 175 (244)
Q Consensus 131 ~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 175 (244)
.-+.|++-+++++++..+---... ....||.-++.-+...+.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 112355557888888776422121 2247998887776444433
No 43
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=63.72 E-value=41 Score=30.97 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=50.0
Q ss_pred HHHHHhhhCCCccEEEEecCceEecHH---HHHHHHHccCCCCceEEEEeecCcccccCCCcccc---ccccccCCCCCC
Q 045376 55 TYFSTAFSIWDAEFYIKVDDDVHVNLG---ALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHE---PEYWKFGEEGNN 128 (244)
Q Consensus 55 ~~~~wa~~~~~~~fvlK~DDD~fVn~~---~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~---~~~~~~~y~~~~ 128 (244)
.++.|+.+..++++++.++||..+.++ -+.+.|......+++++-.-.+ +.+.+..+ |. ..
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----dnG~~~~~~~~~~--------~l 153 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----DNGKEHFVDDTPS--------LL 153 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----cCCcccccCCCcc--------eE
Confidence 366666664579999999999999998 5556666655556654332111 11111111 22 12
Q ss_pred CC-CCccccccccCHHHHHHH
Q 045376 129 YF-MHATGQIYAISKDLAAYI 148 (244)
Q Consensus 129 yp-~y~~G~~YvlS~dlv~~i 148 (244)
|. .|+.|.|+++.+++-..+
T Consensus 154 yrs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 154 YRTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EEecCCCchHHHHHHHHHHHh
Confidence 22 345689999999998877
No 44
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=61.45 E-value=99 Score=26.07 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=59.4
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccC-CCCceEEEEee-cCcccccCCCcc---ccccc--cccC-CCCCC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHK-SKPRIYIGCMK-SGPVLYQKGMKY---HEPEY--WKFG-EEGNN 128 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~-~~pv~~~~~~kw---y~~~~--~~~~-y~~~~ 128 (244)
++.+.+..+.+|++.+|.|..+.++.|.+++.... ....+..|... .+... ....| ..+.. +... ..+ .
T Consensus 85 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~-~ 161 (243)
T PLN02726 85 YIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGV--HGWDLRRKLTSRGANVLAQTLLW-P 161 (243)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCc--CCccHHHHHHHHHHHHHHHHHhC-C
Confidence 34444445689999999999999988888776542 23345566431 11000 00001 11100 0000 001 1
Q ss_pred CCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHH--hcCCCeEe
Q 045376 129 YFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWF--IGLDVEHV 177 (244)
Q Consensus 129 yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l--~~l~v~~~ 177 (244)
.-+...|+..++++++++.|...... ..| ..|+-+...+ .|..+..+
T Consensus 162 ~~~d~~g~~~~~rr~~~~~i~~~~~~-~~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 162 GVSDLTGSFRLYKRSALEDLVSSVVS-KGY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred CCCcCCCcccceeHHHHHHHHhhccC-CCc-EEehHHHHHHHHcCCcEEEe
Confidence 11235788889999999998653322 222 2244444333 55555554
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=61.07 E-value=89 Score=25.42 Aligned_cols=85 Identities=9% Similarity=-0.027 Sum_probs=46.7
Q ss_pred CCccEEEEecCceEecHHHHHHHHHc-cCCCCceEEEEe-ecCcccccCCCcc--cccc--ccccCCCCCCCCCCccccc
Q 045376 64 WDAEFYIKVDDDVHVNLGALMNALAN-HKSKPRIYIGCM-KSGPVLYQKGMKY--HEPE--YWKFGEEGNNYFMHATGQI 137 (244)
Q Consensus 64 ~~~~fvlK~DDD~fVn~~~L~~~L~~-~~~~~~~y~G~~-~~~pv~~~~~~kw--y~~~--~~~~~y~~~~yp~y~~G~~ 137 (244)
...+|++.+|+|..+.++.|...+.. ..+...+..|.. ...... .....+ +.+. .+........-.+.++|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 34599999999999999888888876 344445555643 221111 000000 0000 0000000011123467888
Q ss_pred cccCHHHHHHHH
Q 045376 138 YAISKDLAAYIS 149 (244)
Q Consensus 138 YvlS~dlv~~i~ 149 (244)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999886
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=60.20 E-value=79 Score=25.67 Aligned_cols=104 Identities=11% Similarity=0.002 Sum_probs=56.0
Q ss_pred HHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEe--e--cC-cccccCCCccccccccccCCCCCCCCCC
Q 045376 58 STAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCM--K--SG-PVLYQKGMKYHEPEYWKFGEEGNNYFMH 132 (244)
Q Consensus 58 ~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~--~--~~-pv~~~~~~kwy~~~~~~~~y~~~~yp~y 132 (244)
.-+....+.+|++.+|+|..+.++.|.+.+....... ..+|.. . .+ ...+....++.... .. ...++
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 136 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS------RL-FGLPY 136 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee------cc-cCCCc
Confidence 3344444689999999999999888888766544333 334432 1 11 10000000111110 00 11122
Q ss_pred ccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC
Q 045376 133 ATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD 173 (244)
Q Consensus 133 ~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 173 (244)
++.+.++++++...+-.-.... ..||.-++.=+...+
T Consensus 137 -~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G 173 (221)
T cd02522 137 -GDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRG 173 (221)
T ss_pred -CCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCC
Confidence 3567888999887774332222 689988876665444
No 47
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=56.32 E-value=82 Score=29.68 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=59.2
Q ss_pred HHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCce--EEEEeecCc-ccccCCC--ccccccccccCCC-----
Q 045376 56 YFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRI--YIGCMKSGP-VLYQKGM--KYHEPEYWKFGEE----- 125 (244)
Q Consensus 56 ~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~~~p-v~~~~~~--kwy~~~~~~~~y~----- 125 (244)
.++++.+..+.+|++..|.|..+.++.|.+.+......+.+ ..|.+...+ ....... .+.....-.+.|.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 45566666678999999999999999888877665433332 234432211 1000000 0111100000010
Q ss_pred ------CCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHH
Q 045376 126 ------GNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWF 169 (244)
Q Consensus 126 ------~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l 169 (244)
...-+..++|++.++.++++..+---. ...-.||.-++.-+
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl 248 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQI 248 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHH
Confidence 001122357888889999887653211 22238999998655
No 48
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=54.93 E-value=72 Score=30.69 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=59.5
Q ss_pred CCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHHH
Q 045376 5 KGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGAL 83 (244)
Q Consensus 5 ~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~L 83 (244)
.|+-.++-+|.++....+ +.. +.+| .+|+--.-.+...|..+.++-+.+ ..+..||+- .|+|++-...
T Consensus 230 ~~vf~V~~lg~PP~E~~~----~tr--~~~g---N~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfL--SdV~LD~~~v 298 (525)
T KOG3818|consen 230 SGVFHVNELGFPPVERRE----VTR--KELG---NLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFL--SDVFLDDKKV 298 (525)
T ss_pred cceEEEeeccCCCCCcch----hHH--HHhc---cCcccCCcchhhhHHHHHHHHHHHhCcCceEEEE--ehhccccHHH
Confidence 478888888988753212 111 2233 344444445678999999999888 889999888 7899876555
Q ss_pred HHHH----HccCCCCc---eEEEEeecCcc
Q 045376 84 MNAL----ANHKSKPR---IYIGCMKSGPV 106 (244)
Q Consensus 84 ~~~L----~~~~~~~~---~y~G~~~~~pv 106 (244)
+..| ....+.++ +++|.+.+.|.
T Consensus 299 m~aL~kifqgy~~~pP~~iIlcG~FtS~p~ 328 (525)
T KOG3818|consen 299 MEALRKIFQGYKDAPPTAIILCGSFTSSPR 328 (525)
T ss_pred HHHHHHHHhhccCCCCeEEEEecccccccc
Confidence 5544 44444444 56787766554
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=54.52 E-value=1.2e+02 Score=24.74 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=50.9
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCE-EEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDF-LRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Di-l~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
...++.|-+.+.+ .....+++..++++.. ..+...... .... .+..+.+....+|++.+|.|..+.++.|.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~~----a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-GKGG----AVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-CcHH----HHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 5666666555543 2234455555566664 333333322 1222 22333333456999999999999999888
Q ss_pred HHHHc-cCCCCceEEEEe
Q 045376 85 NALAN-HKSKPRIYIGCM 101 (244)
Q Consensus 85 ~~L~~-~~~~~~~y~G~~ 101 (244)
+++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 88876 333345667753
No 50
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=53.72 E-value=66 Score=29.01 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=58.6
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEeccc--ccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLI--EGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGAL 83 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~--D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L 83 (244)
++.+.|+=|.+ ..++.|.+=.....-++.+|+. +.+..-+.-...+..|+.+.++.++++..|-|+|...++.
T Consensus 38 ~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF 112 (346)
T COG4092 38 ITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNF 112 (346)
T ss_pred cEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHH
Confidence 45555655544 3457777777888888888864 4555445556677888888779999999999999999999
Q ss_pred HHHHH
Q 045376 84 MNALA 88 (244)
Q Consensus 84 ~~~L~ 88 (244)
.+.|.
T Consensus 113 ~k~l~ 117 (346)
T COG4092 113 AKMLS 117 (346)
T ss_pred HHHHH
Confidence 98873
No 51
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=51.74 E-value=1.3e+02 Score=26.53 Aligned_cols=137 Identities=11% Similarity=0.048 Sum_probs=73.1
Q ss_pred CCCEEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCc-eEEEEe-ec--Cccccc
Q 045376 34 HQDFLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPR-IYIGCM-KS--GPVLYQ 109 (244)
Q Consensus 34 ~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~-~y~G~~-~~--~pv~~~ 109 (244)
+.++..+...++.- ..-=.-.+++.|....+. |++-.++|+.+.++-|.+.++..+..+. ...|.. .. ++...+
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67777766554332 111111455666552222 9999999999999888888876644333 334432 11 111100
Q ss_pred C--------CCcccccccccc--C-CCCCCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC
Q 045376 110 K--------GMKYHEPEYWKF--G-EEGNNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD 173 (244)
Q Consensus 110 ~--------~~kwy~~~~~~~--~-y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 173 (244)
. ...|.-...... . .+.....+++.|++.++++++++.+--- ..--.+..||+-++.=+...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~-de~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGF-DERFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCC-CcccceeehHHHHHHHHHHcC
Confidence 0 011111110000 0 0001122257899999999999998652 222233599999987774443
No 52
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=51.73 E-value=1.4e+02 Score=24.93 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=63.7
Q ss_pred HHHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCC-Cce-EEEE-eecCcccccCCCcccccccc-ccC-----CCC
Q 045376 56 YFSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSK-PRI-YIGC-MKSGPVLYQKGMKYHEPEYW-KFG-----EEG 126 (244)
Q Consensus 56 ~~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~~-y~G~-~~~~pv~~~~~~kwy~~~~~-~~~-----y~~ 126 (244)
.++.+.+..+.+|++.+|+|+.+.++.|.+.+...... +.+ .+|. +...........+.+....+ .++ ...
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555677999999999999999998888765422 232 2222 21100000000011100000 000 000
Q ss_pred CCCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhc--CCCeEe
Q 045376 127 NNYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIG--LDVEHV 177 (244)
Q Consensus 127 ~~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~--l~v~~~ 177 (244)
...+..++|++.++++++.+.+--... ....||..++.=+.. ..+...
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEe
Confidence 122334578889999999988743222 224799999887744 444444
No 53
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=48.54 E-value=1e+02 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.6
Q ss_pred HHhhhCCCccEEEEecCceEecHHHHHHHHH
Q 045376 58 STAFSIWDAEFYIKVDDDVHVNLGALMNALA 88 (244)
Q Consensus 58 ~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~ 88 (244)
..+.+..+.+|++-+|+|..+.++.+...+.
T Consensus 70 ~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 70 NAGLKAARGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHHhcCCEEEEECCCCccCccHHHHHHH
Confidence 3344433799999999999999988887643
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=47.11 E-value=89 Score=27.25 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=72.3
Q ss_pred CCCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCccc-ccCC
Q 045376 34 HQDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVL-YQKG 111 (244)
Q Consensus 34 ~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~-~~~~ 111 (244)
+..-+.+-+...-.|.-.|+-..-..... -.+.+|++-.|-|+.+.++.|.+.+......++ +|-+.. |.. .+..
T Consensus 63 ~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~-~~~~~n~~ 139 (254)
T cd04191 63 LGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQT-APKLIGAE 139 (254)
T ss_pred hCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeC-CceeECCC
Confidence 33333333333333444566554444433 257899999999999999999988876533333 344331 111 1111
Q ss_pred C---ccc-------ccc------ccccCCCCCCCCCCccccccccCHHHHHHHHHcC-----CCC-CCCCchhHHHHHHH
Q 045376 112 M---KYH-------EPE------YWKFGEEGNNYFMHATGQIYAISKDLAAYISFNS-----PIL-HTYANEDVSLGSWF 169 (244)
Q Consensus 112 ~---kwy-------~~~------~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~-----~~~-~~~~~EDV~iG~~l 169 (244)
+ ++. .+. .|. ..-.+|.|...++.++++..+.... .-. ...-.||..+|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~ 213 (254)
T cd04191 140 TLFARLQQFANRLYGPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALM 213 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHH
Confidence 1 110 000 010 0113467999999999887753321 111 22358999999998
Q ss_pred hcCCCe
Q 045376 170 IGLDVE 175 (244)
Q Consensus 170 ~~l~v~ 175 (244)
...+-+
T Consensus 214 ~~~G~r 219 (254)
T cd04191 214 RRAGWE 219 (254)
T ss_pred HHcCCE
Confidence 554433
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=42.97 E-value=2.3e+02 Score=24.75 Aligned_cols=162 Identities=10% Similarity=0.024 Sum_probs=86.4
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEe--cccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRL--NLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGAL 83 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~--d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L 83 (244)
.+++++|=+.+. ....+.|.+-.+.++-+..+ +.....-+.+. +.+-+.+....++++..|.|+.+.++.+
T Consensus 34 ~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~~i 106 (281)
T PF10111_consen 34 DFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPDFI 106 (281)
T ss_pred CEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHHHH
Confidence 455555544443 23346677777777766222 22222223332 2233344458999999999999999999
Q ss_pred HHHHH---ccCCC-CceEEEEe-e-c--Cc--ccccCCCcccc--ccccccCCCCCCCC-CCccccccccCHHHHHHHHH
Q 045376 84 MNALA---NHKSK-PRIYIGCM-K-S--GP--VLYQKGMKYHE--PEYWKFGEEGNNYF-MHATGQIYAISKDLAAYISF 150 (244)
Q Consensus 84 ~~~L~---~~~~~-~~~y~G~~-~-~--~p--v~~~~~~kwy~--~~~~~~~y~~~~yp-~y~~G~~YvlS~dlv~~i~~ 150 (244)
.+.+. ..... ..+.++-+ . + +. ........|.. .+.. .....+.+. ....|+..+++++.-..|--
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~i~r~~f~~iGG 185 (281)
T PF10111_consen 107 EKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESF-ISGKNSLWEFIAFASSCFLINREDFLEIGG 185 (281)
T ss_pred HHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHH-hhccccccccccccceEEEEEHHHHHHhCC
Confidence 98888 33222 23333322 1 1 11 10000000100 0000 000111111 12346899999999888866
Q ss_pred cCCCCCCCCchhHHHHHHHhcCCCe
Q 045376 151 NSPILHTYANEDVSLGSWFIGLDVE 175 (244)
Q Consensus 151 ~~~~~~~~~~EDV~iG~~l~~l~v~ 175 (244)
.......+..||.=++.=|...+..
T Consensus 186 fDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 186 FDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCccccCCCcchHHHHHHHHHcCCc
Confidence 5566677789999998877555443
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=40.71 E-value=50 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=29.6
Q ss_pred HHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEE
Q 045376 58 STAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGC 100 (244)
Q Consensus 58 ~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~ 100 (244)
..+.+..+.+|++..|+|..+.++.|.+.+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444556789999999999999888776655443333345554
No 57
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=39.14 E-value=2.2e+02 Score=27.76 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=57.8
Q ss_pred CccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcc----ccccccc-c--CCC-CC--CCCCCcc
Q 045376 65 DAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKY----HEPEYWK-F--GEE-GN--NYFMHAT 134 (244)
Q Consensus 65 ~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kw----y~~~~~~-~--~y~-~~--~yp~y~~ 134 (244)
++++++-.|-|..+.++.|..+-. .-+...+.-.-+...+ .+...| |.-+... + ..+ .+ .-+.-+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNY-LLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHh-hcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 469999999999999988875432 2222221110011100 011111 1100000 0 000 00 1122368
Q ss_pred ccccccCHHHHHHHHHcCC---CCCCCCchhHHHHHHHh--cCCCeEec
Q 045376 135 GQIYAISKDLAAYISFNSP---ILHTYANEDVSLGSWFI--GLDVEHVD 178 (244)
Q Consensus 135 G~~YvlS~dlv~~i~~~~~---~~~~~~~EDV~iG~~l~--~l~v~~~~ 178 (244)
|.++++++++++.|..... .-...--||.-+|.-+. |..+...+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p 282 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVR 282 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEec
Confidence 9999999999999864322 22334589999999884 44454443
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=37.98 E-value=3e+02 Score=24.74 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=68.0
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHHHhhCCC-EEEecccccCCchhHHHHHHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAEDAEHQD-FLRLNLIEGYKKLSTKTKTYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~D-il~~d~~D~y~nLt~Kt~~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
...+++|-..+.+. . .+.+++-.+++++ ++......++- ...=..++++ ..+.+|++.+|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D~--T-~~il~~~~~~~~~~v~~i~~~~n~G-~~~A~~~G~~----~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSDN--S-AEMLVEAAQAPDSHIVAILLNRNYG-QHSAIMAGFS----HVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCCc--H-HHHHHHHHhhcCCcEEEEEeCCCCC-HHHHHHHHHH----hCCCCEEEEECCCCCCCHHHHH
Confidence 46777776666532 2 1223332334444 44444443332 2222223333 3478999999999999998888
Q ss_pred HHHHccCCCCceEEEEeec--CcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHc
Q 045376 85 NALANHKSKPRIYIGCMKS--GPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFN 151 (244)
Q Consensus 85 ~~L~~~~~~~~~y~G~~~~--~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~ 151 (244)
++++.......+..|.... .+..+.-.++.+..- .+. ..+..++.+.+ +.-++++++++.+...
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l-~~~-~~g~~~~d~~~-gfr~~~r~~~~~l~~~ 175 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRL-IQR-TTGKAMGDYGC-MLRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHH-HHH-HcCCCCCCCCc-CeEEEcHHHHHHHHHC
Confidence 8887654333344443321 222211112211110 000 12334444332 2348999999998643
No 59
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=37.27 E-value=41 Score=29.39 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred CCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCccccccccccCCCCCCCCCCccccccccCHH
Q 045376 64 WDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKD 143 (244)
Q Consensus 64 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~d 143 (244)
...+-|+-+|||+.++.+.|.......+..+.-++|..-..-.....+++|--...| .+.|-. ...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~ySm-vLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYSM-VLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BSE-E-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcchh-hhhhhHhhcch
Confidence 468899999999999999998877776666666788752111111134455332222 123322 23344445555
Q ss_pred HHHHHHHcCC-----C-CCCCCchhHHHHHHHh
Q 045376 144 LAAYISFNSP-----I-LHTYANEDVSLGSWFI 170 (244)
Q Consensus 144 lv~~i~~~~~-----~-~~~~~~EDV~iG~~l~ 170 (244)
.......... . -....=||+.+-.+++
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5443321110 0 1234689999887774
No 60
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=34.88 E-value=79 Score=24.30 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=17.3
Q ss_pred cccccccCHHHHHHHHHcCCC
Q 045376 134 TGQIYAISKDLAAYISFNSPI 154 (244)
Q Consensus 134 ~G~~YvlS~dlv~~i~~~~~~ 154 (244)
+..+|++|+..++.+.+....
T Consensus 99 ~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred CceEEEeCHHHHHHHHHhCCC
Confidence 557899999999999886554
No 61
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=34.87 E-value=99 Score=31.34 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=65.8
Q ss_pred HHHhhhCCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEee-------cCcccccCCCcccccccc-cc-C--CC
Q 045376 57 FSTAFSIWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMK-------SGPVLYQKGMKYHEPEYW-KF-G--EE 125 (244)
Q Consensus 57 ~~wa~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~-------~~pv~~~~~~kwy~~~~~-~~-~--y~ 125 (244)
++.+.+..+.+|++..|.|+.+..+-|.+.+......+++ |.+. ..|+.++-......+.+. .| + .+
T Consensus 220 LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v--~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~ 297 (713)
T TIGR03030 220 INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL--FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQD 297 (713)
T ss_pred HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE--EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHH
Confidence 4555566678999999999999998888777654323332 2221 111111100000001000 00 0 00
Q ss_pred CC--CCCCCccccccccCHHHHHHHHHcCCCCCCCCchhHHHHHHHhcCC--CeEecCCCcc
Q 045376 126 GN--NYFMHATGQIYAISKDLAAYISFNSPILHTYANEDVSLGSWFIGLD--VEHVDDRSMC 183 (244)
Q Consensus 126 ~~--~yp~y~~G~~YvlS~dlv~~i~~~~~~~~~~~~EDV~iG~~l~~l~--v~~~~~~~f~ 183 (244)
+. .-.+++.|++.++++++.+.+---. ...-.||..++.-+...+ +...++....
T Consensus 298 g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 298 GNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 00 0123567899999999998773221 122379999999885544 4444544443
No 62
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=34.29 E-value=2.4e+02 Score=22.38 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=52.1
Q ss_pred HHHHHHHHhhh-CCCccEEEEecCceEecHHHHHHHHHccCCCCceEEEEeecCcccccCCCcccccc---ccc----c-
Q 045376 52 KTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGALMNALANHKSKPRIYIGCMKSGPVLYQKGMKYHEPE---YWK----F- 122 (244)
Q Consensus 52 Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~~~~~~kwy~~~---~~~----~- 122 (244)
-.-.+++.+.. -.+.+|++.+|.|+.+.++.|...+........+..|..... .+...|.-.- .+. +
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 142 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLR 142 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHH
Confidence 33345555542 346899999999999998888877776544445666654311 1111221000 000 0
Q ss_pred --CCCCCCCCCCccccccccCHHHHHH
Q 045376 123 --GEEGNNYFMHATGQIYAISKDLAAY 147 (244)
Q Consensus 123 --~y~~~~yp~y~~G~~YvlS~dlv~~ 147 (244)
+...-.-+.++.|+++++++++++.
T Consensus 143 ~~~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 143 PLGRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHHHcCCCeeecCchhhhHHHHHHh
Confidence 0000022335689999999999887
No 63
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=34.01 E-value=1.7e+02 Score=27.00 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=50.5
Q ss_pred EeeeCCCCCchhHHHHHHHHhhCCCEEEecc-----cccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHHHHH
Q 045376 12 VIGHSAKPGGVLDKGIDAEDAEHQDFLRLNL-----IEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGALMN 85 (244)
Q Consensus 12 vlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~-----~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~L~~ 85 (244)
|+|=....+.. .+-|.+=.++|.+.+-+-. ...-.+..-+.-..+.|+.. -+..+|++|+|.|-...+..|.+
T Consensus 117 VI~yNdc~D~t-~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 117 VIGYNDCTDGT-EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred EEEeecCCCCH-HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhh
Confidence 55544332222 3445666678888776521 11112223355668888888 58899999999999999999987
Q ss_pred HHHcc
Q 045376 86 ALANH 90 (244)
Q Consensus 86 ~L~~~ 90 (244)
..-..
T Consensus 196 sfY~p 200 (347)
T PF06306_consen 196 SFYIP 200 (347)
T ss_pred hheee
Confidence 66543
No 64
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=30.80 E-value=1e+02 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEec
Q 045376 5 KGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLN 41 (244)
Q Consensus 5 ~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d 41 (244)
.|.+|+|--|+.-.....+..+|+++.+++.|++++-
T Consensus 2 ~g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvh 38 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDHELIWAALDKVHARHPDMVLVH 38 (71)
T ss_pred CCCEEEEEECCccccHHHHHHHHHHHHHhCCCEEEEE
Confidence 4788889888886544566788999999999988654
No 65
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=29.43 E-value=2.4e+02 Score=25.17 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred CeEEEEEeeeCCCCCchhHHHHHHH----------HhhCCCEEEe--cccccC------------CchhHHHHHHH-HHh
Q 045376 6 GIVIRFVIGHSAKPGGVLDKGIDAE----------DAEHQDFLRL--NLIEGY------------KKLSTKTKTYF-STA 60 (244)
Q Consensus 6 gv~v~FvlG~~~~~~~~~~~~l~~E----------~~~~~Dil~~--d~~D~y------------~nLt~Kt~~~~-~wa 60 (244)
-|.+-|+++.+...+ ...+.|+.+ ...|+.|.++ ||.+.- ...-.+.++-- +|+
T Consensus 56 lIsLgfLv~d~~e~d-~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~L 134 (269)
T PF03452_consen 56 LISLGFLVSDSSEFD-NTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFL 134 (269)
T ss_pred heEEEEEcCCCchhH-HHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHH
Confidence 477889999987422 223344433 3456666554 453321 11222333311 232
Q ss_pred hh---CCCccEEEEecCceEecHHHHHHHHHccC
Q 045376 61 FS---IWDAEFYIKVDDDVHVNLGALMNALANHK 91 (244)
Q Consensus 61 ~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~ 91 (244)
.. -+..+||+-.|-|+.-.++.|++.|..+.
T Consensus 135 L~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 135 LSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 22 46899999999999999999999887754
No 66
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=26.57 E-value=2.5e+02 Score=23.40 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=42.9
Q ss_pred ccEEEEecCceEecHHHHHHHHHccCCCC---ceEEEEeec------CcccccCCCccccccccccCCCCCCC-CCCccc
Q 045376 66 AEFYIKVDDDVHVNLGALMNALANHKSKP---RIYIGCMKS------GPVLYQKGMKYHEPEYWKFGEEGNNY-FMHATG 135 (244)
Q Consensus 66 ~~fvlK~DDD~fVn~~~L~~~L~~~~~~~---~~y~G~~~~------~pv~~~~~~kwy~~~~~~~~y~~~~y-p~y~~G 135 (244)
.+.++-+.+|++.+. .+.+.|+.+.... .+.++.... |-+..+..+ .+-... +=|.... ..++.+
T Consensus 103 ~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~V~~~~--EKP~~~~~~~~~~~ 177 (248)
T PF00483_consen 103 DEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG--RVIRIV--EKPDNPNASNLINT 177 (248)
T ss_dssp -SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS--EEEEEE--ESCSSHSHSSEEEE
T ss_pred cceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccce--eEEEEe--ccCcccccceeccC
Confidence 456888888888876 5666665543222 234444321 222222211 111100 0022222 447889
Q ss_pred cccccCHHHHHHHHH
Q 045376 136 QIYAISKDLAAYISF 150 (244)
Q Consensus 136 ~~YvlS~dlv~~i~~ 150 (244)
+.|+++.++...+.+
T Consensus 178 G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 178 GIYIFKPEIFDFLLE 192 (248)
T ss_dssp EEEEEETHHHHHHHH
T ss_pred ceEEEcchHHHHHhh
Confidence 999999999998864
No 67
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=26.19 E-value=77 Score=26.99 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=21.4
Q ss_pred HHHHHhhhCCCccEEEEecCceEecHHHHH
Q 045376 55 TYFSTAFSIWDAEFYIKVDDDVHVNLGALM 84 (244)
Q Consensus 55 ~~~~wa~~~~~~~fvlK~DDD~fVn~~~L~ 84 (244)
..++-+.+..+++|++.+.||+++.-++++
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l 73 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWL 73 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHH
Confidence 477888888899999999999999644433
No 68
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=25.99 E-value=2.4e+02 Score=19.90 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCeEEEEEeeeCCCCCchhHHHHHHHHhhCCCEEEecccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEecHHH
Q 045376 5 KGIVIRFVIGHSAKPGGVLDKGIDAEDAEHQDFLRLNLIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHVNLGA 82 (244)
Q Consensus 5 ~gv~v~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fVn~~~ 82 (244)
-|+.-++|+-..++ + . ..++.++ +..+-.......+..-... ...++.+.+ ..+++|++.+|-|=|+-++.
T Consensus 17 lG~d~i~i~d~~s~-D-~-t~~~l~~---~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 17 LGVDHIYIYDDGST-D-G-TREILRA---LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred cCCCEEEEEECCCC-c-c-HHHHHHh---CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 36665555544332 2 1 1333333 3445555555666543333 334444444 46899999999999987644
No 69
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=25.47 E-value=48 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=20.5
Q ss_pred hHHHHHHHHH--hh---h-CCCccEEEEecCceEe
Q 045376 50 STKTKTYFST--AF---S-IWDAEFYIKVDDDVHV 78 (244)
Q Consensus 50 t~Kt~~~~~w--a~---~-~~~~~fvlK~DDD~fV 78 (244)
-.+++..++. +. . |++++|++|.|++=+.
T Consensus 47 l~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 47 LYQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 3566666654 23 3 8999999999998553
No 70
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.62 E-value=1.2e+02 Score=26.77 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCccccccccCHHHHHHHHHcCCCCC-CCCchhHHHHHHHhcCCCeEe-cCCCccc
Q 045376 131 MHATGQIYAISKDLAAYISFNSPILH-TYANEDVSLGSWFIGLDVEHV-DDRSMCC 184 (244)
Q Consensus 131 ~y~~G~~YvlS~dlv~~i~~~~~~~~-~~~~EDV~iG~~l~~l~v~~~-~~~~f~~ 184 (244)
.+.+-+||++|+.+++.+.+.....+ ..+.|+...-.++.+.+.+.+ ..+..|.
T Consensus 153 ~~~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~~~~~~~vyq~~p~~~~ 208 (255)
T COG3306 153 YHLGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEFLHGVGNKVYQPFPAICA 208 (255)
T ss_pred cccCccceeecHHHHHHHHHHhhhcccccChhHHHhhhhccccCceEEEecccccc
Confidence 45788999999999999988765433 345777766666644444332 2444443
No 71
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.07 E-value=1.5e+02 Score=25.09 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCccEEEEecCceEecHHHHHHHHHccCCCCce--EEEEeec-C---cccc-cCCCcccccccc-ccCCCCCCCCCCccc
Q 045376 64 WDAEFYIKVDDDVHVNLGALMNALANHKSKPRI--YIGCMKS-G---PVLY-QKGMKYHEPEYW-KFGEEGNNYFMHATG 135 (244)
Q Consensus 64 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~~-~---pv~~-~~~~kwy~~~~~-~~~y~~~~yp~y~~G 135 (244)
.+.+|++.+|.|+.+.++.|.+.+......+++ ..|.+.. . ..+. -....|...... +.....-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 589999999999999998888777654333332 3343321 1 1100 000001000000 000001133556789
Q ss_pred cccccCHHHHHHHHHcCC----------CC-------CCCCchhHHHHHHHh--cCCCeE
Q 045376 136 QIYAISKDLAAYISFNSP----------IL-------HTYANEDVSLGSWFI--GLDVEH 176 (244)
Q Consensus 136 ~~YvlS~dlv~~i~~~~~----------~~-------~~~~~EDV~iG~~l~--~l~v~~ 176 (244)
++.++.+++++.+..... .+ .....||..++..+. |..+..
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 999999998876532111 00 112479999988884 444444
No 72
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=20.34 E-value=4.5e+02 Score=22.14 Aligned_cols=141 Identities=12% Similarity=0.115 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCEEEec----ccccCCchhHHHHHHHHHhhh-CCCccEEEEecCceEe--cHHHHHHHHHccCCCCceEE
Q 045376 26 GIDAEDAEHQDFLRLN----LIEGYKKLSTKTKTYFSTAFS-IWDAEFYIKVDDDVHV--NLGALMNALANHKSKPRIYI 98 (244)
Q Consensus 26 ~l~~E~~~~~Dil~~d----~~D~y~nLt~Kt~~~~~wa~~-~~~~~fvlK~DDD~fV--n~~~L~~~L~~~~~~~~~y~ 98 (244)
++.+-.+.+..+..++ +.=+-.++..=++..++.|.+ ..+.+|++-...+-|. ....|.++|..... ...++
T Consensus 44 ~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~-~~~f~ 122 (244)
T PF02485_consen 44 EIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNG-DNNFI 122 (244)
T ss_dssp HHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT---B--
T ss_pred HHHHhcccCCceeecccccccccCCccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCC-CCcce
Confidence 3444455667766655 444556677788889999999 7899987666555554 57888899987632 22333
Q ss_pred EEee-cCcccccCCCccccccccccCCCCCCCCCCccccccccCHHHHHHHHHcCC-------CC-CCCCchhHHHHHHH
Q 045376 99 GCMK-SGPVLYQKGMKYHEPEYWKFGEEGNNYFMHATGQIYAISKDLAAYISFNSP-------IL-HTYANEDVSLGSWF 169 (244)
Q Consensus 99 G~~~-~~pv~~~~~~kwy~~~~~~~~y~~~~yp~y~~G~~YvlS~dlv~~i~~~~~-------~~-~~~~~EDV~iG~~l 169 (244)
.... .++-. . .+|.......+.+.-..-..|-+.+-+.||++.|+.|..... .. ..+-.|-.++..++
T Consensus 123 ~~~~~~~~~~--~-~r~~~~~~~~~~~~~~~~~~~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll 199 (244)
T PF02485_consen 123 ESFSDEDPRE--S-GRYNPRIYDPFRPFFRKRTLYKGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLL 199 (244)
T ss_dssp -BEE--GGGG----HHHHEEEETTEEEEEEEE--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH-
T ss_pred ecccccccch--h-hcceeeeeeecccccccccccccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhh
Confidence 3332 11110 1 122111000000000000335667788999999999984321 11 23457778887775
Q ss_pred h
Q 045376 170 I 170 (244)
Q Consensus 170 ~ 170 (244)
.
T Consensus 200 ~ 200 (244)
T PF02485_consen 200 N 200 (244)
T ss_dssp -
T ss_pred c
Confidence 3
Done!