BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045377
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 18 MVGHLSQLALSSVAIATSL---TNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYT 74
M G +S + +++V+IA S+ + + G LL MA L + Q GA + K+ +
Sbjct: 38 MAGGVSAIDMAAVSIAASIWLPSILFGVGLL--MA--LVPVVAQLNGAGRQHKIPFEVHQ 93
Query: 75 AII-SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRY 133
+I +L++ P++ +L+ ++ + + ++ + Y +I A+ + + L +
Sbjct: 94 GLILALLVSVPIIAVLFQ-TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSF 152
Query: 134 FQTQSLILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAFSLSTWLNVILLGL 189
SL P F+ L +IP W V+ ELG +G +A ++ W+ ++LL
Sbjct: 153 TDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLF 212
Query: 190 YMMYS------SACEKTRAPVSKESLLAIGQFFRLAIPSA 223
Y++ S E P KE + + FRL P A
Sbjct: 213 YIVTSKRLAHVKVFETFHKPQPKELI----RLFRLGFPVA 248
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 112 KYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASS 147
+Y MW I A + T YF+ + +LP F+ S
Sbjct: 177 RYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVS 212
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 112 KYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASS 147
+Y MW I A + T YF+ + +LP F+ S
Sbjct: 195 RYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVS 230
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 112 KYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASS 147
+Y MW I A + T YF+ + +LP F+ S
Sbjct: 195 RYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVS 230
>pdb|3RFR|J Chain J, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
pdb|3RFR|B Chain B, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
pdb|3RFR|F Chain F, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
Length = 252
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 140 ILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK 199
+LP+ +F C A W + F+L G++ A L + W+N Y +
Sbjct: 68 VLPILGVTF---CAASQAFWWVNFRLPFGAVFAVLGLMIGEWIN--------RYVNFWGW 116
Query: 200 TRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSG 241
T P+S L PSA++V W +++++LLSG
Sbjct: 117 TYFPIS------------LVFPSAMIVPAIW--LDVILLLSG 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,292,933
Number of Sequences: 62578
Number of extensions: 224967
Number of successful extensions: 516
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 5
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)