Query 045377
Match_columns 256
No_of_seqs 174 out of 1613
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.6E-36 3.6E-41 261.6 29.4 253 1-254 26-282 (455)
2 PRK10367 DNA-damage-inducible 100.0 8.1E-34 1.8E-38 244.6 30.5 251 2-253 19-272 (441)
3 PRK00187 multidrug efflux prot 100.0 1.3E-33 2.9E-38 245.0 30.8 251 2-253 20-276 (464)
4 PRK09575 vmrA multidrug efflux 100.0 3.5E-32 7.6E-37 235.7 29.6 250 2-252 22-274 (453)
5 PRK10189 MATE family multidrug 100.0 5E-32 1.1E-36 235.5 30.2 251 2-253 39-299 (478)
6 PRK01766 multidrug efflux prot 100.0 6.6E-31 1.4E-35 228.3 29.9 251 2-253 22-279 (456)
7 TIGR00797 matE putative efflux 100.0 2.4E-29 5.1E-34 210.8 30.5 251 1-252 2-255 (342)
8 PRK00187 multidrug efflux prot 99.9 1.4E-23 3E-28 182.4 24.0 190 2-192 246-442 (464)
9 PRK10189 MATE family multidrug 99.9 5.6E-23 1.2E-27 179.0 25.9 196 3-199 270-467 (478)
10 PRK01766 multidrug efflux prot 99.9 6.2E-23 1.3E-27 178.4 24.4 192 2-194 249-442 (456)
11 KOG1347 Uncharacterized membra 99.9 5.4E-23 1.2E-27 176.9 22.0 253 2-256 38-290 (473)
12 COG0534 NorM Na+-driven multid 99.9 3E-22 6.4E-27 173.1 25.5 194 2-197 251-446 (455)
13 PRK09575 vmrA multidrug efflux 99.9 6.5E-22 1.4E-26 171.7 24.6 189 3-194 245-436 (453)
14 TIGR01695 mviN integral membra 99.9 7.6E-21 1.7E-25 167.2 27.4 219 2-230 233-456 (502)
15 TIGR02900 spore_V_B stage V sp 99.9 1.5E-20 3.4E-25 164.7 27.9 237 2-243 9-255 (488)
16 TIGR01695 mviN integral membra 99.9 5.8E-20 1.3E-24 161.7 29.7 242 2-250 10-260 (502)
17 PRK15099 O-antigen translocase 99.9 1.3E-19 2.9E-24 155.8 25.5 241 2-251 11-254 (416)
18 PF01554 MatE: MatE; InterPro 99.9 4.3E-22 9.4E-27 149.3 5.8 158 2-160 3-162 (162)
19 PRK10367 DNA-damage-inducible 99.9 6.6E-19 1.4E-23 152.1 25.3 185 3-194 243-431 (441)
20 PF03023 MVIN: MviN-like prote 99.8 5.2E-18 1.1E-22 146.8 29.4 191 2-194 208-403 (451)
21 COG0728 MviN Uncharacterized m 99.8 6.6E-17 1.4E-21 139.0 28.3 225 2-235 242-471 (518)
22 TIGR02900 spore_V_B stage V sp 99.8 1E-17 2.2E-22 146.9 21.8 188 2-194 235-434 (488)
23 PRK10459 colanic acid exporter 99.8 6.7E-16 1.5E-20 135.7 27.3 186 2-193 217-404 (492)
24 PRK15099 O-antigen translocase 99.8 4.5E-16 9.7E-21 134.0 24.1 185 2-193 225-411 (416)
25 PF03023 MVIN: MviN-like prote 99.7 1.1E-14 2.3E-19 126.3 28.7 223 22-250 5-235 (451)
26 COG2244 RfbX Membrane protein 99.7 4.6E-15 1E-19 130.0 23.4 184 2-191 223-408 (480)
27 COG0728 MviN Uncharacterized m 99.6 7.8E-12 1.7E-16 108.0 28.4 245 3-250 18-269 (518)
28 PF01943 Polysacc_synt: Polysa 99.6 1.2E-11 2.6E-16 100.0 27.4 233 2-250 9-243 (273)
29 PRK10459 colanic acid exporter 99.5 2.4E-11 5.2E-16 106.9 25.7 228 2-250 15-245 (492)
30 PF13440 Polysacc_synt_3: Poly 99.4 1.2E-09 2.5E-14 87.4 27.1 217 11-250 3-221 (251)
31 TIGR00797 matE putative efflux 99.4 2.3E-11 4.9E-16 102.0 15.3 115 2-117 226-341 (342)
32 COG2244 RfbX Membrane protein 99.3 2.4E-09 5.2E-14 94.0 22.8 231 2-249 16-250 (480)
33 PF14667 Polysacc_synt_C: Poly 99.1 8.3E-09 1.8E-13 75.7 14.2 79 114-194 2-80 (146)
34 KOG1347 Uncharacterized membra 99.0 5.3E-10 1.1E-14 97.0 7.4 181 13-194 268-452 (473)
35 PF07260 ANKH: Progressive ank 98.8 2.3E-05 4.9E-10 63.3 24.2 235 4-246 23-269 (345)
36 PF04506 Rft-1: Rft protein; 98.7 2.7E-06 5.9E-11 75.2 19.6 190 4-194 265-470 (549)
37 KOG2864 Nuclear division RFT1 98.4 0.00014 3.1E-09 61.4 18.9 171 23-195 273-450 (530)
38 COG4267 Predicted membrane pro 92.3 6.3 0.00014 33.5 21.4 138 42-194 74-211 (467)
39 COG4267 Predicted membrane pro 84.1 26 0.00056 30.0 13.4 109 66-181 320-433 (467)
40 PF05975 EcsB: Bacterial ABC t 76.0 50 0.0011 28.4 16.2 35 64-98 89-124 (386)
41 PF04506 Rft-1: Rft protein; 75.1 66 0.0014 29.2 15.0 31 2-32 11-42 (549)
42 PF01943 Polysacc_synt: Polysa 57.0 64 0.0014 25.3 7.4 58 2-59 215-272 (273)
43 PF03904 DUF334: Domain of unk 56.5 65 0.0014 25.3 6.6 17 87-103 165-181 (230)
44 PF04505 Dispanin: Interferon- 53.0 38 0.00081 21.9 4.3 36 50-85 38-73 (82)
45 KOG2864 Nuclear division RFT1 47.2 2.1E+02 0.0045 25.5 21.7 181 2-191 18-205 (530)
46 PF01102 Glycophorin_A: Glycop 44.7 34 0.00074 24.1 3.3 27 170-196 67-93 (122)
47 PF14184 YrvL: Regulatory prot 44.1 1.2E+02 0.0026 21.7 13.5 104 73-178 5-109 (132)
48 KOG2234 Predicted UDP-galactos 41.4 1.5E+02 0.0033 25.1 7.1 31 199-229 76-106 (345)
49 PF04144 SCAMP: SCAMP family; 38.0 1.8E+02 0.0038 22.0 10.3 117 54-176 16-135 (177)
50 TIGR00383 corA magnesium Mg(2+ 36.6 1.9E+02 0.0042 23.9 7.3 16 181-196 302-317 (318)
51 PF02592 DUF165: Uncharacteriz 36.5 1.6E+02 0.0035 21.2 12.2 58 169-237 67-124 (145)
52 PRK11085 magnesium/nickel/coba 32.3 2.4E+02 0.0053 23.6 7.0 16 181-196 300-315 (316)
53 KOG1330 Sugar transporter/spin 27.6 1.2E+02 0.0025 27.1 4.5 52 7-59 40-91 (493)
54 COG4536 CorB Putative Mg2+ and 26.7 4.2E+02 0.0091 22.9 8.8 89 4-103 66-156 (423)
55 PRK03612 spermidine synthase; 24.1 5.4E+02 0.012 23.3 20.4 48 143-192 151-198 (521)
56 PF05393 Hum_adeno_E3A: Human 22.3 1.6E+02 0.0036 19.3 3.4 29 166-194 29-57 (94)
57 TIGR01478 STEVOR variant surfa 22.0 1.4E+02 0.003 24.5 3.7 26 169-194 260-285 (295)
58 PRK09546 zntB zinc transporter 21.9 3.4E+02 0.0075 22.6 6.3 16 180-195 307-322 (324)
59 COG0598 CorA Mg2+ and Co2+ tra 21.6 4.3E+02 0.0094 22.0 6.8 25 171-196 297-321 (322)
60 PF08570 DUF1761: Protein of u 21.5 2.9E+02 0.0063 19.2 5.8 20 171-190 3-22 (126)
61 PF04854 DUF624: Protein of un 20.4 2.3E+02 0.005 17.6 5.0 15 209-223 53-67 (77)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.6e-36 Score=261.56 Aligned_cols=253 Identities=22% Similarity=0.295 Sum_probs=234.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 1 MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 1 i~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
++++++.+.+++.+|+.++||+|++++|+.+.++++...+ ..+..+++.+.++.++|++|+||++++++..+++.....
T Consensus 26 ~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~ 104 (455)
T COG0534 26 IILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLAL 104 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
.++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++.+..+.+|+.||++.+++.++.++++|+++|+
T Consensus 105 ~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~ 184 (455)
T COG0534 105 LLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNY 184 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhH
Confidence 999887776 9999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-cc-cccchHHHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045377 160 TLVFK-LE-LGSMGAALAFSLSTWLNVILLGLYMMYSSA-CEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEIL 236 (256)
Q Consensus 160 ~li~~-~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 236 (256)
+|+++ .+ +|+.|+++||.+++.+.++...++++|+++ ......+..+.+++..|+++++++|.+++...+...+...
T Consensus 185 llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~ 264 (455)
T COG0534 185 LLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLL 264 (455)
T ss_pred HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99998 46 999999999999999999999999888764 2222233334556889999999999999999999999999
Q ss_pred HHHHhcCCChhhhhhhhc
Q 045377 237 ILLSGLLPNPKLETSVLS 254 (256)
Q Consensus 237 ~~~~~~~g~~~~a~~~~~ 254 (256)
+.+.+++|++.+|++.++
T Consensus 265 ~~~~~~~G~~~lAa~~i~ 282 (455)
T COG0534 265 TLFVARLGTVALAAYGIA 282 (455)
T ss_pred HHHHHhcChHHHHHHHHH
Confidence 999999999999987653
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=8.1e-34 Score=244.56 Aligned_cols=251 Identities=18% Similarity=0.154 Sum_probs=225.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHL-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
+++++.+.+++.+|+.++||+ |++++|+.+++.++.++. ..+..+++.+.++.+||++|+||+|++++..+++..+..
T Consensus 19 ~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~ 97 (441)
T PRK10367 19 IFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLAL 97 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999998 678999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
+.+++..+. ..+.+++..+++.|+|+.+.+.+|+++..++.|+..+..+..+.+|+.||++.+++.++++.++|+++++
T Consensus 98 ~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~ 177 (441)
T PRK10367 98 GAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence 999888876 7888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKT-RAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILIL 238 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 238 (256)
++++.+++|+.|+++|+.+++.+.+++..++++++++.++. .+.++.+.++..|+++|++.|..++...+...+.+.+.
T Consensus 178 ~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~ 257 (441)
T PRK10367 178 WLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITV 257 (441)
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999998887777654322211 11111111246899999999999999999999999999
Q ss_pred HHhcCCChhhhhhhh
Q 045377 239 LSGLLPNPKLETSVL 253 (256)
Q Consensus 239 ~~~~~g~~~~a~~~~ 253 (256)
+++++|++++|++.+
T Consensus 258 ~~~~~G~~alAa~~I 272 (441)
T PRK10367 258 LGARLGSDIIAVNAV 272 (441)
T ss_pred HHHhcCHHHHHHHHH
Confidence 999999999887654
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.3e-33 Score=245.03 Aligned_cols=251 Identities=21% Similarity=0.226 Sum_probs=224.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
+++++.+.++..+|+.+++|+|++++|+++.+.++.++. ..+..|++.+.++.++|++|+||+|++++..+++..+..+
T Consensus 20 ~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~ 98 (464)
T PRK00187 20 IASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWL 98 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999997 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTL 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~l 161 (256)
++++..++..+.+|++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.++...++|+++|++|
T Consensus 99 ~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~l 178 (464)
T PRK00187 99 LALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYAL 178 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777557899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh----cccccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377 162 VFK----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK--TRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI 235 (256)
Q Consensus 162 i~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (256)
+++ |++|+.|+++|+.+++....+...++++++++.++ .+++..+.+++..|+++|+++|..+++..+...+.+
T Consensus 179 Ifg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i 258 (464)
T PRK00187 179 IEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTF 258 (464)
T ss_pred HcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 975 36899999999999998888777666655432211 112222345577999999999999999999999999
Q ss_pred HHHHHhcCCChhhhhhhh
Q 045377 236 LILLSGLLPNPKLETSVL 253 (256)
Q Consensus 236 ~~~~~~~~g~~~~a~~~~ 253 (256)
++.+++++|++++|++.+
T Consensus 259 ~~~~i~~~G~~alAa~~i 276 (464)
T PRK00187 259 AALCMGALGSTQLAAHQI 276 (464)
T ss_pred HHHHHHHcCHHHHHHHHH
Confidence 999999999999987654
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.5e-32 Score=235.68 Aligned_cols=250 Identities=17% Similarity=0.140 Sum_probs=224.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHL-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
+++++.+.+++.+|+.+++++ |++++++++.+.++.++. ..+..+++.+.++.++|++|+||+|++++..+++..+..
T Consensus 22 ~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~ 100 (453)
T PRK09575 22 IAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLL 100 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999995 999999999999999987 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
+.+++.+++ ..+.++++.+++.|++..+.+.+|+++..++.|+..+.....+.+|+.|+++.+++.++.+.++|+++++
T Consensus 101 ~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~ 180 (453)
T PRK09575 101 LLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDY 180 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhH
Confidence 999988877 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL 239 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 239 (256)
.+++.+++|+.|+++|+.+++.+.+++..++++++++..+...+..+.+++..|++++++.|..++...+...+.+.+.+
T Consensus 181 ~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~ 260 (453)
T PRK09575 181 LFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRL 260 (453)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 99988899999999999999999999988777654332221111223345778999999999999999999999999999
Q ss_pred HhcCCC-hhhhhhh
Q 045377 240 SGLLPN-PKLETSV 252 (256)
Q Consensus 240 ~~~~g~-~~~a~~~ 252 (256)
.+++|+ +++|++.
T Consensus 261 ~~~~g~~~~lAa~~ 274 (453)
T PRK09575 261 FMEYGSALTVGAYA 274 (453)
T ss_pred HHHhCchHHHHHHH
Confidence 999996 4677654
No 5
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=5e-32 Score=235.53 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=224.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
+++++.+.+++.+|+.+++++|++++|+++++.++..+. ..+..|++.+.++.++|++|+||+|++++..+++..++..
T Consensus 39 ~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~ 117 (478)
T PRK10189 39 FIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTL 117 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIG--QDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPAC 158 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~ 158 (256)
.+++.+++ ..+.+++..++. .|+|+.+.+.+|+++..++.|+..+.....+.+|+.||++.+++.++...++|++++
T Consensus 118 ~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~ 197 (478)
T PRK10189 118 FAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIIS 197 (478)
T ss_pred HHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHh
Confidence 99988877 888999999995 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh----cccccchHHHHHHHHHHHHHHHHHHHHHhc-c-cccccCCC-CCHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 045377 159 WTLVFK----LELGSMGAALAFSLSTWLNVILLGLYMMYS-S-ACEKTRAP-VSKESLLAIGQFFRLAIPSAIMVCLKWW 231 (256)
Q Consensus 159 ~~li~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (256)
+.+++. +++|+.|+++|+.+++.+..++..+++.++ + ..+.++++ +.+.+++.+|+++++++|.+++......
T Consensus 198 ~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~ 277 (478)
T PRK10189 198 SILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNG 277 (478)
T ss_pred HHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHH
Confidence 999975 479999999999999999988877666543 2 11212222 1223567899999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhhhhh
Q 045377 232 SMEILILLSGLLPNPKLETSVL 253 (256)
Q Consensus 232 ~~~~~~~~~~~~g~~~~a~~~~ 253 (256)
.+.+.+.+++++|++++|++.+
T Consensus 278 ~~~~~~~~~~~~G~~~~Aa~~I 299 (478)
T PRK10189 278 GKLLTQMFVAGMGTSVIAGNFI 299 (478)
T ss_pred HHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999887654
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=6.6e-31 Score=228.28 Aligned_cols=251 Identities=19% Similarity=0.302 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
+++++...+++.+|+.+++++|++++++++.+.++.... ..+..|++.+..|.+||++|+||+|+.++..+++..+...
T Consensus 22 ~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~ 100 (456)
T PRK01766 22 LLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALF 100 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999998876 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT 160 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~ 160 (256)
.+++.+++ ..+.+++..+++.|++..+.+.+|+++..++.++..+..++++++++.|+++++++.++++.++|++++++
T Consensus 101 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~ 180 (456)
T PRK01766 101 LSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYI 180 (456)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99888877 78889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh----cccccchHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Q 045377 161 LVFK----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACE--KTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSME 234 (256)
Q Consensus 161 li~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 234 (256)
+++. +++|+.|+++++.+++.+..++..++.+|+++.+ +.+.++.+.+++..|+++++++|..++...+...+.
T Consensus 181 li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~ 260 (456)
T PRK01766 181 FIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFA 260 (456)
T ss_pred HHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 9864 5789999999999999999999988877654321 122222234557799999999999999999999999
Q ss_pred HHHHHHhcCCChhhhhhhh
Q 045377 235 ILILLSGLLPNPKLETSVL 253 (256)
Q Consensus 235 ~~~~~~~~~g~~~~a~~~~ 253 (256)
+.+.+.+++|++++|+..+
T Consensus 261 ~~~~~~~~~G~~~lAa~~i 279 (456)
T PRK01766 261 VVTLLVSPLGTVTVAAHQI 279 (456)
T ss_pred HHHHHHHHcChHHHHHHHH
Confidence 9999999999998887554
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.98 E-value=2.4e-29 Score=210.77 Aligned_cols=251 Identities=27% Similarity=0.402 Sum_probs=224.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 1 MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 1 i~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
++++++...++..+|+.+++++|++++++++.+.++.++. ..+..|++++..|.++++.|+||+|+.++..++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 2 AILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999998887 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..+++.+++ ..+.+++.++++.|++..+++.+++++++++.++..+..+..+.+|+.||.+...+.++.+.++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 999998877 8899999999887888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hcc-cccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045377 160 TLVF-KLE-LGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILI 237 (256)
Q Consensus 160 ~li~-~~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 237 (256)
.+++ ..+ +|+.|+++++.+++.+.+++..++.+|+++.+..+++..+.+++..|++++++.|..+++...+..+.+++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~ 240 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLA 240 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 9986 456 77999999999999999999887777643333222222234457799999999999999999999999999
Q ss_pred HHHhcCCChhhhhhh
Q 045377 238 LLSGLLPNPKLETSV 252 (256)
Q Consensus 238 ~~~~~~g~~~~a~~~ 252 (256)
.+.+++|++++++..
T Consensus 241 ~i~~~~g~~~v~~~~ 255 (342)
T TIGR00797 241 LLVARLGSIALAAHQ 255 (342)
T ss_pred HHHHHcCcHHHHHHH
Confidence 999999988777543
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=1.4e-23 Score=182.44 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
++++..+.....+|..+++++|++++|+++++.++.++. ..+..|++.+.+++++|++|+||+|++++..+++..++..
T Consensus 246 ~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~ 324 (464)
T PRK00187 246 GGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAV 324 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCC--CH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQ--DP---VISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFH 154 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~ 154 (256)
.+++.+++ +.+++++.+++.+ ++ ++.+.+..++++.+++.++..++.+..+.+|+.||++.+++.++... +++
T Consensus 325 ~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ 404 (464)
T PRK00187 325 VMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVG 404 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHH
Confidence 99888877 8899999999953 33 67889999999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 045377 155 IPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMM 192 (256)
Q Consensus 155 i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~ 192 (256)
+++++++.+.+++|+.|+|+++.+++.+..+.....++
T Consensus 405 ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 405 APLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred HHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999887766553
No 9
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=5.6e-23 Score=178.97 Aligned_cols=196 Identities=16% Similarity=0.051 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHH
Q 045377 3 AVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILV 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (256)
+++........+.+.+++++|++++|+++++.++.++. ..+..|++++.++.++|++|+||+|++++..+.+..++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 348 (478)
T PRK10189 270 IESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLG 348 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666677777777889999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHH
Q 045377 83 CPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACWT 160 (256)
Q Consensus 83 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~~ 160 (256)
++.++++ ..+++++.++|.+|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++.++... ++.+|+.++
T Consensus 349 ~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~l 428 (478)
T PRK10189 349 LTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYI 428 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9888877 88999999999999999999999999999999999999999999999999999998887665 788889888
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 045377 161 LVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK 199 (256)
Q Consensus 161 li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 199 (256)
+....++|..|+|++..+++.+..++..+++++.+|+++
T Consensus 429 l~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 429 LGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 877678999999999999999999998888887776653
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=6.2e-23 Score=178.40 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
.+++..+.....++..+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|+||+|++++..+.+..++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~ 327 (456)
T PRK01766 249 GLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLG 327 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW 159 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~ 159 (256)
.+++.+++ +.+.+++.++|.+|+++.+.+..++++..++.++..++.+..+.+||.||++.++..++... ++++++.+
T Consensus 328 ~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~ 407 (456)
T PRK01766 328 MALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGY 407 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988877 88999999999999999999999999999999999999999999999999999999999877 78999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
++.+.+++|+.|+|+++.+++.+..++..++.++.
T Consensus 408 ~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 408 ILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887889999999999999999999888777654
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.92 E-value=5.4e-23 Score=176.94 Aligned_cols=253 Identities=45% Similarity=0.728 Sum_probs=235.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
++.++.+.....++..++||+|+.++++.+.+.+..+.....+..|+..+..+..+|++|+++++....+.+++......
T Consensus 38 i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~ 117 (473)
T KOG1347|consen 38 ILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLV 117 (473)
T ss_pred HHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999998778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTL 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~l 161 (256)
.+++....+.+.+|+...+++|+++.+.+..|.+.+.+..+..........++|++++..+..+......++++++++.+
T Consensus 118 ~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~ll 197 (473)
T KOG1347|consen 118 QGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLL 197 (473)
T ss_pred HHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045377 162 VFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSG 241 (256)
Q Consensus 162 i~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 241 (256)
++.+++|..|++++..+++.........+..... ..+.|..+.++ .+.++++++.++|.+++..++++.++++.++.+
T Consensus 198 v~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G 275 (473)
T KOG1347|consen 198 VSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAG 275 (473)
T ss_pred hhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988887665 55666666666 788999999999999999999999999999999
Q ss_pred cCCChhhhhhhhccC
Q 045377 242 LLPNPKLETSVLSIW 256 (256)
Q Consensus 242 ~~g~~~~a~~~~~i~ 256 (256)
.++..+++....+||
T Consensus 276 ~l~np~~~~~~~sI~ 290 (473)
T KOG1347|consen 276 LLGNAKVSLASQSIC 290 (473)
T ss_pred ccCCcHHHHHHHHHH
Confidence 999866665555553
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.91 E-value=3e-22 Score=173.14 Aligned_cols=194 Identities=24% Similarity=0.272 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
.++++........-+.+++++|++.+|+++++.++.++. ..+..|++++.++.++|++|+||+|++++..+.+..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~ 329 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL 329 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW 159 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~ 159 (256)
++...+.+ +.+++++.++|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.+++.++... .+.+++.+
T Consensus 330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~ 409 (455)
T COG0534 330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY 409 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence 99888877 99999999999999999999999999999999999999999999999999999999988865 66788888
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 197 (256)
++.+.. +|..|+|++...++.+..+...+++++++|.
T Consensus 410 ~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 410 LLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888554 9999999999999999999999988877544
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=6.5e-22 Score=171.68 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 3 AVSVLQYLLQVVSTVMVGHLSQ-LALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~g~-~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
+++....+...+.+.+++++|+ +++|+++++.++.++. ..+..|++.+.++.+||++|+||+|++++..+++..++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~ 323 (453)
T PRK09575 245 FMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL 323 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 4566666777777888889885 6899999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQ-DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
.+++.+++ ..+++++..+|.. |||+.+.+.+++++.+++.++.++..+..+.+||.||++.+++.++...+++++..+
T Consensus 324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ 403 (453)
T PRK09575 324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHH
Confidence 99998887 8899999999985 788999999999999999999999999999999999999999999998888999888
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
++. +.+|..|+|+++.+++.+..+...+.++++
T Consensus 404 ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 404 ILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 876 348999999999999999988887776654
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=7.6e-21 Score=167.24 Aligned_cols=219 Identities=16% Similarity=0.079 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
.+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++.+..|.++|++|+||+|+.++..+++.+....
T Consensus 233 ~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 233 TLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45778889999999998666899999999999999998734568899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP 156 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~ 156 (256)
.+.+.+++ ..+++++..++.+ |++.++.+.+++++++++.++..++.+..+.+++.||++.+++.++...+++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~ 392 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHH
Confidence 99998887 8899999998865 567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHH
Q 045377 157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKW 230 (256)
Q Consensus 157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (256)
++++++ +.+|..|+++++.+++.+..++..++.+|+.+. .+..+..+++.|...++.++....+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~as~~m~~~~~ 456 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIASAIIGGVLY 456 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 569999999999999999999988777764211 0112445566666666666655543
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.89 E-value=1.5e-20 Score=164.72 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=195.9
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSL-LSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISL 79 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (256)
+++++...+.+.+|+.+++| +|+++.|.++.+.++.++. ..+ ..|++.+..+.++|+.|+||+|+.++.++.++.+.
T Consensus 9 ~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~ 87 (488)
T TIGR02900 9 TIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFT 87 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 57899999999999999999 5999999999999999987 444 56999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 045377 80 ILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPAC 158 (256)
Q Consensus 80 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~ 158 (256)
...+++.+++ ..+.+++.+.+.++++. ..+++++++..++..+.....+.+|+.+|.+.....++++.++++.++
T Consensus 88 l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~ 163 (488)
T TIGR02900 88 LIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVV 163 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHH
Confidence 9999888877 77777777766666543 356788899999999999999999999999999999999999988776
Q ss_pred HHHHhh-----cccccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 045377 159 WTLVFK-----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK--TRAPVSKESLLAIGQFFRLAIPSAIMVCLKWW 231 (256)
Q Consensus 159 ~~li~~-----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (256)
..++.. .+.++.|+++++.+++.+..+...++.+|+++.+. .+.+..+.+++..|++++.+.|..+++.....
T Consensus 164 ~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~ 243 (488)
T TIGR02900 164 ALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSL 243 (488)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655532 35678889999999999999988766655433211 11111233457899999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 045377 232 SMEILILLSGLL 243 (256)
Q Consensus 232 ~~~~~~~~~~~~ 243 (256)
...+++.+.++.
T Consensus 244 ~~~~d~~ii~~~ 255 (488)
T TIGR02900 244 LYFLETLLVPQR 255 (488)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.89 E-value=5.8e-20 Score=161.67 Aligned_cols=242 Identities=11% Similarity=0.100 Sum_probs=191.2
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLAL-SSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIIS 78 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~-a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (256)
.++++.+.+++++|..++++ +|+++. ++++.+.++.+....... .|++.+..|...++.+++ |+.++...++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~~~~~~~~~ 87 (502)
T TIGR01695 10 SLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARRAFANTVTT 87 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 57899999999999999999 799999 899999999877623333 468888777776654332 6777777776665
Q ss_pred HHHH-HHHHHHH-HHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 045377 79 LILV-CPLVCLL-WIFMDKLLPLI--GQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFH 154 (256)
Q Consensus 79 ~~~~-~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~ 154 (256)
.... ++...++ +.+++++..++ +.+++..+.+.+|++++.++.++..+..+.++++|+.||.+.+.+.++..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~ 167 (502)
T TIGR01695 88 LLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGV 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHH
Confidence 5544 4444555 77888888877 346666788999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhhcccccchHH--HHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 045377 155 IPACWTLVFKLELGSMGAA--LAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWS 232 (256)
Q Consensus 155 i~~~~~li~~~~~g~~G~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (256)
+.....+. +++|..|++ +++.+++.+..+...++.+|++...++ +++ .+++..|++++.+.|..++.......
T Consensus 168 i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~k~~l~~~~p~~~~~~~~~~~ 242 (502)
T TIGR01695 168 ILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP--RFN-FRDPGLKRFLKLFLPTTLGSSASQIT 242 (502)
T ss_pred HHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC--cCC-CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 77544444 679999998 999999999998887777654321111 111 23366899999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhh
Q 045377 233 MEILILLSGLLPNPKLET 250 (256)
Q Consensus 233 ~~~~~~~~~~~g~~~~a~ 250 (256)
..+++.+.+.+|+++++.
T Consensus 243 ~~id~~~~~~~~~~~v~~ 260 (502)
T TIGR01695 243 LLINTALASFLEIGSVSA 260 (502)
T ss_pred HHHHHHHHhcCCcchHHH
Confidence 999999988888877764
No 17
>PRK15099 O-antigen translocase; Provisional
Probab=99.87 E-value=1.3e-19 Score=155.79 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
..+++.....+++-..+++| +|+++.|.++...++..........|++.+.+..++|+ ++|+|+.++..+.++.+..
T Consensus 11 ~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~ 88 (416)
T PRK15099 11 AASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVL 88 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 35677888888888989999 59999999999999999874444888888888899988 6788999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..+++.+++ +.+.+|+...+.++++ + ...+.+..+..++..+.....+.+|+.||.+.++...+.+.++|+.+ +
T Consensus 89 ~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~ 163 (416)
T PRK15099 89 GFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-Y 163 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 999888877 8888999887777664 2 34566667767777888899999999999999999999999999887 4
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL 239 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 239 (256)
++... ..|+.|+++|+.+++.+..+...++.+|+++.+..+.++ +.+++..|++++++.|..+++...+.....++.+
T Consensus 164 i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~ 241 (416)
T PRK15099 164 YLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNL 241 (416)
T ss_pred HHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 249999999999999999888777766543321111111 2345778999999999999999999999999998
Q ss_pred Hh-cCCChhhhhh
Q 045377 240 SG-LLPNPKLETS 251 (256)
Q Consensus 240 ~~-~~g~~~~a~~ 251 (256)
++ .+|+++++..
T Consensus 242 l~~~~g~~~vg~y 254 (416)
T PRK15099 242 LAAHYSWDEVGIW 254 (416)
T ss_pred HHhcCCHHHhhHH
Confidence 85 8898877653
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.86 E-value=4.3e-22 Score=149.26 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
.++++.+.+...+|+.+++++|++++++++.+.++.++. ..+..|++.+..+.+||++|+||+|+.++..+++..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~ 81 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLI 81 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccchh
Confidence 578999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW 159 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~ 159 (256)
++++.+++ ..+.+++.++++.|++..+.+.+|+++..++.|+..+.....+++++.||++..++.++... +++++++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~y 161 (162)
T PF01554_consen 82 IGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAY 161 (162)
T ss_dssp HHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHh
Confidence 99999988 99999999999999999999999999999999999999999999999999999999999998 99999887
Q ss_pred H
Q 045377 160 T 160 (256)
Q Consensus 160 ~ 160 (256)
+
T Consensus 162 l 162 (162)
T PF01554_consen 162 L 162 (162)
T ss_dssp H
T ss_pred C
Confidence 5
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=6.6e-19 Score=152.15 Aligned_cols=185 Identities=22% Similarity=0.156 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHH
Q 045377 3 AVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILV 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (256)
+++........+-+.+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|+||+|++++..+++.++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777888888999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHH
Q 045377 83 CPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSL---ILPMFASSFLILCFHIPAC 158 (256)
Q Consensus 83 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~i~~~~~~i~~~ 158 (256)
+...+++ ..+++++..+|.+|+|+.+.+..++++.++..+.........+.++|.+| ++.+++.+.....+ .
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~ 397 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFAL----T 397 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH----H
Confidence 9998887 88999999999999999999999999998764433345455555665555 88888877766432 1
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 159 WTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 159 ~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
.+.. +++|..|+|++..+++.+..++..++++++
T Consensus 398 ~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 398 LLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 468999999999999999999988766554
No 20
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.85 E-value=5.2e-18 Score=146.82 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
++++...++...+|+.+.+.+++.++++++.+.++.+++...+..+++++..|..++...+||.++.++..++..+....
T Consensus 208 ~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~ 287 (451)
T PF03023_consen 208 LLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILL 287 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999867889999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP 156 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~ 156 (256)
+.+|.++. ..+++|+++++.+ +++..+.....+++++++.|+..++..+...+.+.||++.+++.++.+.++|++
T Consensus 288 i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~ 367 (451)
T PF03023_consen 288 ILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNII 367 (451)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHH
Confidence 99999987 9999999997742 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
++..+. +.+|..|.++|+.++..+.++...+.++|+
T Consensus 368 l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 368 LSILLV--PFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888 779999999999999999999998888766
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.81 E-value=6.6e-17 Score=139.01 Aligned_cols=225 Identities=15% Similarity=0.099 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
.++..+.++...+|+.+-+.+.+..++.+..+.++.+++...+..++++...|..|++..++|.++.++..+++++++..
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP 156 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~ 156 (256)
+++|.+.. ..+++|++..+.+ +++....+.+.+..+..+.++..+..++...+++.+|+|.+++..+++.++|+.
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~ 401 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHH
Confidence 99999988 9999999987743 556677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377 157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI 235 (256)
Q Consensus 157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (256)
+++.+. +.+|..|.+.++.++.++++.+.++.++|+....+ ...+...+ ..|..+.++++....+.....
T Consensus 402 l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~k~~l~~~i~~~~~~~~~~~ 471 (518)
T COG0728 402 LNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-ILKLLLASAIMAAALLALLHL 471 (518)
T ss_pred HHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 997777 67999999999999999999999888887643222 12233344 566666666665554444333
No 22
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.80 E-value=1e-17 Score=146.94 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcC----C---hH---HHHHH-HHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHL----S---QL---ALSSV-AIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGV 70 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~----g---~~---~~a~~-~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~ 70 (256)
+++++...+.+.+|+.++++. | .+ ..+.+ +.+.++.+++ ..+..+++.+..|.++|+.|+||+|+.++
T Consensus 235 ~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s~~~~~~~~~~~~~ 313 (488)
T TIGR02900 235 TLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDISEAMAKKNYSSIEK 313 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 467788899999999999873 2 12 22323 3566777777 77889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 045377 71 HTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFL 149 (256)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~ 149 (256)
..+++.++....+.+.++. ..++++++.++.+++ ++.++++++++..++..+.....+.+++.||++..++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 389 (488)
T TIGR02900 314 RINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLI 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999999999998877 888999999887543 36788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 150 ILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 150 ~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
..++++++++.++..|++|..|+++++.+++.+..+...+..+|.
T Consensus 390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998766789999999999999999999998888754
No 23
>PRK10459 colanic acid exporter; Provisional
Probab=99.77 E-value=6.7e-16 Score=135.66 Aligned_cols=186 Identities=18% Similarity=0.168 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
+.+++...+.+.+|+.++++ +|++++|.|+.+.++.+.+...+...++....|..++. ++|+++.++.+++..+...
T Consensus 217 ~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~ 294 (492)
T PRK10459 217 TAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLG 294 (492)
T ss_pred HHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence 45677888999999999999 59999999999999998864555666778889999886 6788899999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..++|++++ ..+++|++.++.+++ ++++.+.+++++++..+..........+++.||++.....++...+++++..+
T Consensus 295 ~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~ 372 (492)
T PRK10459 295 IINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIV 372 (492)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHH
Confidence 999998887 888999998887665 78889999999999999999999999999999999999999999888888877
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY 193 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 193 (256)
.+. +.+|..|+++++.+++.+.+....++..|
T Consensus 373 ~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 373 IGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 56899999999999999998888877744
No 24
>PRK15099 O-antigen translocase; Provisional
Probab=99.76 E-value=4.5e-16 Score=133.95 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVG-HLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~-~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
.++++...+.+..|+.+++ ++|++++|.|+.+.++.+.....+..+++++..|.++++ +|+|+.++..++......
T Consensus 225 ~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~ 301 (416)
T PRK15099 225 LITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVL 301 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH
Confidence 4677888999999999997 589999999999999988433788999999999999995 577889999999999998
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..+.+.++. ..++++++.++.+|+ ++++.+++++++++..+...+...+..+...++++......+...++++++++
T Consensus 302 ~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~ 379 (416)
T PRK15099 302 PAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAH 379 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877 799999999998776 66688899999999999888888887777888888999999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY 193 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 193 (256)
+++ |.+|..|+++++.+++.+..........+
T Consensus 380 ~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 380 WLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 77999999999999999999887755543
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=1.1e-14 Score=126.28 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=185.6
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045377 22 LSQL-ALSSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLP 98 (256)
Q Consensus 22 ~g~~-~~a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 98 (256)
+|.. +..+|..+.++.+++...+. .++..+..|...+.. ++|+|+.++..+.........++.++++ +++++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 56689999999999833444 568999999999998 8899999999999988888888777777 899999999
Q ss_pred hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccc---cchHH
Q 045377 99 LI--GQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELG---SMGAA 173 (256)
Q Consensus 99 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g---~~G~~ 173 (256)
.+ +.|++..+.+.+.++++.+..++..+..++.+++|+++|...+....+..++..+.....+. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 88 34678889999999999999999999999999999999999999888888877665444433 4567 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Q 045377 174 LAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLET 250 (256)
Q Consensus 174 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 250 (256)
++..++..+..+..+...+|.+.+.+...++ +.+..|++++...|..+.....++...++..+++.+++..++.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~ 235 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSA 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 9999999999999998888765442322221 1256889999999999999999999999999999999988875
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.71 E-value=4.6e-15 Score=129.96 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
..++....+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++.+..|..++...++|+++.++..+++.+...
T Consensus 223 ~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 301 (480)
T COG2244 223 LLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLL 301 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 46788999999999999999 5999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..++|..++ ..+++|++..+.+++ +..+...++++++..++..+.......+++.|+++...+.+..+.++|..+++
T Consensus 302 ~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~ 379 (480)
T COG2244 302 LISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379 (480)
T ss_pred HHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Confidence 999999988 899999999887766 44488899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYM 191 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~ 191 (256)
+++ +.+|..|++.++ .+.........+..
T Consensus 380 ~li--~~~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 380 LLI--PRFGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HHH--HhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 999 789999999999 55333333333333
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.58 E-value=7.8e-12 Score=108.02 Aligned_cols=245 Identities=15% Similarity=0.124 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-CChH-HHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 045377 3 AVSVLQYLLQVVSTVMVGH-LSQL-ALSSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISL 79 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~-~g~~-~~a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (256)
..+++..+.+++...+++. +|.. ...++.++.++.+++--.+. .+++++..|...++..++++|+.++..+...-..
T Consensus 18 ~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l 97 (518)
T COG0728 18 SATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLL 97 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 4567788888888888888 6874 56689999999998734443 3458999999999988877777777777777566
Q ss_pred HHHHHHHHHH-HHHHHHHHhhc-CC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 045377 80 ILVCPLVCLL-WIFMDKLLPLI-GQ--DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHI 155 (256)
Q Consensus 80 ~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i 155 (256)
....+..++. .++.+.++... .. |++....+....+++.++.++..+....+++++..+|...+.+..+..++.-+
T Consensus 98 ~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I 177 (518)
T COG0728 98 TLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVI 177 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHH
Confidence 6666666666 77777777444 33 23333368888899999999999999999999999999999999988888777
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377 156 PACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI 235 (256)
Q Consensus 156 ~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (256)
.....+.........+.+|+..++-++..+..+...+|.+...++..+++ + +..|++.+...|..+.....++...+
T Consensus 178 ~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~--~-~~lk~~~~~~~p~~l~~sisQi~lli 254 (518)
T COG0728 178 GLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK--D-PGLKRFLKLMLPALLGVSISQINLLI 254 (518)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC--c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443222236789999999999999999999998764433333222 1 66899999999999999999999999
Q ss_pred HHHHHhcCCChhhhh
Q 045377 236 LILLSGLLPNPKLET 250 (256)
Q Consensus 236 ~~~~~~~~g~~~~a~ 250 (256)
++.+++.+.+..++.
T Consensus 255 ~~~iAS~l~~Gsis~ 269 (518)
T COG0728 255 DTAIASFLAEGSVSW 269 (518)
T ss_pred HHHHHHhhccccHHH
Confidence 999999998877653
No 28
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.57 E-value=1.2e-11 Score=99.99 Aligned_cols=233 Identities=13% Similarity=0.156 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
..+++.....+++...++.| +|+++.|.++....+.++.......|+..+.....+++..+ +++.++..........
T Consensus 9 ~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~ 86 (273)
T PF01943_consen 9 FLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLL 86 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 46788888999999999999 69999999999999999874445889999988888876432 3444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~ 160 (256)
..++......... ..+..++. . ..+........+..........++++.++.+.....++...+........
T Consensus 87 ~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (273)
T PF01943_consen 87 IFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILL 158 (273)
T ss_pred HHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332221 23343332 1 12222222222578888889999999999999999999998888877666
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045377 161 LVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240 (256)
Q Consensus 161 li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 240 (256)
+... ..+..+..++..++..+..+...++.+|+.+ .+..+++++..|+.++.+.|..+.....+.....+..++
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii 232 (273)
T PF01943_consen 159 LLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLII 232 (273)
T ss_pred HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6654 3458999999999999998888888776542 222223357899999999999999999999999999998
Q ss_pred hcC-CChhhhh
Q 045377 241 GLL-PNPKLET 250 (256)
Q Consensus 241 ~~~-g~~~~a~ 250 (256)
+++ |+++++.
T Consensus 233 ~~~~g~~~vg~ 243 (273)
T PF01943_consen 233 GYFLGPEAVGI 243 (273)
T ss_pred HHhCCHHHHHH
Confidence 888 6666553
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.51 E-value=2.4e-11 Score=106.93 Aligned_cols=228 Identities=12% Similarity=0.100 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
.+++......+++....++| +|+++.|.++.+..+.++.......|++.+.. |. +|. .++..+..+....
T Consensus 15 ~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~~~~~~~~~~~~ 85 (492)
T PRK10459 15 AISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SHLQLSTLYWLNV 85 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CHHHHHHHHHHHH
Confidence 46788888899999999999 69999999999999999874455667766542 22 111 1234455566666
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
..+....++ +.+.+++..++. +++ ....+++..+..++..+.......++..++.+......+...++......
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i 160 (492)
T PRK10459 86 GLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 666666666 555555555544 443 23567778888888888888999999999988888888888777777666
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL 239 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 239 (256)
.+.. .+.|..+..++..+++.+..+...+..+++ + ++..++ +++..|++++++.|....+...+.....++.+
T Consensus 161 ~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~---~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~ 233 (492)
T PRK10459 161 VSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y--RPALHF---SLASVKPNLSFGAWQTAERIINYLNTNIDTIL 233 (492)
T ss_pred HHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C--Ccccee---cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhh
Confidence 6554 478999999999999988776654333222 1 111112 23568999999999999999999999999998
Q ss_pred HhcC-CChhhhh
Q 045377 240 SGLL-PNPKLET 250 (256)
Q Consensus 240 ~~~~-g~~~~a~ 250 (256)
++++ |++++..
T Consensus 234 lg~~lg~~~vG~ 245 (492)
T PRK10459 234 IGRILGAEVLGG 245 (492)
T ss_pred hhHhhchHhhhh
Confidence 8776 7666543
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.42 E-value=1.2e-09 Score=87.43 Aligned_cols=217 Identities=14% Similarity=0.176 Sum_probs=147.7
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045377 11 LQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL 89 (256)
Q Consensus 11 ~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (256)
.++.-..+++| +|+++.|.|+....+..+.......|+...... . .++|+++.++..+.......+.++....+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888 699999999999999998733335665555433 2 23455566666555554444433333322
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045377 90 WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGS 169 (256)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~ 169 (256)
...+..++ ++++ ...++...++..+.........+.+++.+|.+..........+........+.. .+.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11122233 3332 234566777888889999999999999999888888888888877544444443 23488
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCChhh
Q 045377 170 MGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGL-LPNPKL 248 (256)
Q Consensus 170 ~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 248 (256)
.+..++..++..+..+......+++.+ .+. +.+.. +..+.+.|..+.....+.....+..+++. +|++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRKLR-----LSF---KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-----CCc---hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 899999999888887776654332211 111 11222 37899999999999999999999999998 788777
Q ss_pred hh
Q 045377 249 ET 250 (256)
Q Consensus 249 a~ 250 (256)
+.
T Consensus 220 g~ 221 (251)
T PF13440_consen 220 GI 221 (251)
T ss_pred HH
Confidence 64
No 31
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.37 E-value=2.3e-11 Score=101.97 Aligned_cols=115 Identities=21% Similarity=0.307 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 81 (256)
+++++...+...+|+.+++++|++++++|+.+.++.++. ..+..+++.+..|.+++++++||+|+.++..+++.+....
T Consensus 226 ~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (342)
T TIGR00797 226 AFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLL 304 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045377 82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWL 117 (256)
Q Consensus 82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~ 117 (256)
.+++..++ ..+++++.+++.+||++.+.+..++++.
T Consensus 305 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 305 LGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99998887 8899999999999999999998888764
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.27 E-value=2.4e-09 Score=93.98 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHH-HHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVH-TYTAIISL 79 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~-~~~~~~~~ 79 (256)
..+++...+..++....++| +|+++.|.++.+..+.++.......|+..+....++++.+++|++..+.. ........
T Consensus 16 ~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~ 95 (480)
T COG2244 16 LLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLA 95 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999 69999999999999999984455699999999999988766655555554 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377 80 ILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW 159 (256)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~ 159 (256)
...+.+......+..+. ++ .....+++.....+.........+.+|+.++.+......+.. ........
T Consensus 96 ~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (480)
T COG2244 96 LILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVF 164 (480)
T ss_pred HHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHH
Confidence 44433333333332222 12 234557788999999999999999999999988888774444 11122222
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045377 160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS-SACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILIL 238 (256)
Q Consensus 160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 238 (256)
.+. +.......++...+..........+.+++ ++.++.. + +..++..|+.++.++|..+.....+.....++.
T Consensus 165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~ 238 (480)
T COG2244 165 ALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI--L-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTL 238 (480)
T ss_pred HHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--c-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222 13456667777777777666666555422 1111111 1 113578999999999999999999999999999
Q ss_pred HHhcC-CChhhh
Q 045377 239 LSGLL-PNPKLE 249 (256)
Q Consensus 239 ~~~~~-g~~~~a 249 (256)
+.+.+ |++++.
T Consensus 239 ~i~~~l~~~~vG 250 (480)
T COG2244 239 LLGLFLGPAQVG 250 (480)
T ss_pred HHHHHhhhhHhe
Confidence 88877 655554
No 33
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=99.08 E-value=8.3e-09 Score=75.68 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=74.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377 114 SMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY 193 (256)
Q Consensus 114 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 193 (256)
+++++++.++..+....++.+++.||++.....++.+.++|+++++.++ |++|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999998 78999999999999999999999888887
Q ss_pred c
Q 045377 194 S 194 (256)
Q Consensus 194 ~ 194 (256)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.04 E-value=5.3e-10 Score=96.95 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=155.8
Q ss_pred HHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-
Q 045377 13 VVSTVMVGHLS--QLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL- 89 (256)
Q Consensus 13 ~~~~~~i~~~g--~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 89 (256)
.+-....|.++ +.++++.++........ +....+++.+.++.+++.+|+++++++|.....+.......+...+..
T Consensus 268 eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~ 346 (473)
T KOG1347|consen 268 EILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTL 346 (473)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566665 46899999999999987 888999999999999999999999999999999999888888888876
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHHHHhhcccc
Q 045377 90 WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACWTLVFKLELG 168 (256)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~~li~~~~~g 168 (256)
+...+.+...|..|+++.+...+..++++.+...+..+.+.++..+|.|..+...+.++... ++.++....+-+..++|
T Consensus 347 ~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g 426 (473)
T KOG1347|consen 347 LACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFG 426 (473)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecC
Confidence 88899999999999999999999999999999999999999999999999999888887766 56677777766667899
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 169 SMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 169 ~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
..|.|.+...+..+..........+.
T Consensus 427 ~~glw~G~~~~~~~~~~~l~~~~~~t 452 (473)
T KOG1347|consen 427 VKGLWIGILLGFSVQTLVLAIVTART 452 (473)
T ss_pred ceEEEeehHHHHHHHHHHHHHheeec
Confidence 99999999999666666665555443
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.78 E-value=2.3e-05 Score=63.27 Aligned_cols=235 Identities=13% Similarity=0.050 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHhcC--Ch-HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377 4 VSVLQYLLQVVSTVMVGHL--SQ-LALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~--g~-~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
+++...+...+-+.-+++- .+ +.+|+|+++..+.-++ ..+...+-.....++ +++++| ++..........
T Consensus 23 ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~rsr-r~~vl~~~vag~ 95 (345)
T PF07260_consen 23 TSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKRSR-RKAVLCMAVAGA 95 (345)
T ss_pred HHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchhhh-HHHHHHHHHHHH
Confidence 3444444444555555552 22 4599999999998887 667666666644444 322222 222222222222
Q ss_pred HHHHHHHHH--HHHHHHHH-hhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 045377 81 LVCPLVCLL--WIFMDKLL-PLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPA 157 (256)
Q Consensus 81 ~~~~~~~~~--~~~~~~l~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~ 157 (256)
+......++ --+...++ ..++.+|++.+.+...+.++.....++++....++++-=.+++......++...+..++.
T Consensus 96 v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~ 175 (345)
T PF07260_consen 96 VAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVL 175 (345)
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHH
Confidence 222221222 22233333 456789999999999999999999999999999999885555666666666655555555
Q ss_pred HHHHHhhccccc-chHHH---HHHHHHHHHHHHH-HHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 045377 158 CWTLVFKLELGS-MGAAL---AFSLSTWLNVILL-GLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWS 232 (256)
Q Consensus 158 ~~~li~~~~~g~-~G~~~---a~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (256)
...++.. ++.. ..+++ +...+..+.+-+. +.++++.....++..+..+.+....++++++.+|.+.......++
T Consensus 176 v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~S 254 (345)
T PF07260_consen 176 VAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRIS 254 (345)
T ss_pred HHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555532 1111 22221 1122222222111 223323333333444444444577999999999999999999999
Q ss_pred HHHHHHHHhc-CCCh
Q 045377 233 MEILILLSGL-LPNP 246 (256)
Q Consensus 233 ~~~~~~~~~~-~g~~ 246 (256)
-.+.+.+.+| +|..
T Consensus 255 rplVnl~vsR~l~gs 269 (345)
T PF07260_consen 255 RPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHhhccCCc
Confidence 9999999999 5544
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.73 E-value=2.7e-06 Score=75.21 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCccc---------chHHHH
Q 045377 4 VSVLQYLLQVVSTVMVGH--L-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQF---------RKLGVH 71 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~--~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~---------~~~~~~ 71 (256)
..+.-.+.+--|+..+.. + +.++.|.|++++++-+++.-.+...+--+.-...++...+++. ++..+.
T Consensus 265 Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~ 344 (549)
T PF04506_consen 265 QSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANV 344 (549)
T ss_pred HHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHH
Confidence 345556666678888887 5 7789999999999999987888888888888888887765433 335556
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch---hHHHHHH
Q 045377 72 TYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLI---LPMFASS 147 (256)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~ 147 (256)
....+++...+++..... -..++.++.++.+++=....+...++..+.+.|+.+++++...+.++..+. +......
T Consensus 345 l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m 424 (549)
T PF04506_consen 345 LSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWM 424 (549)
T ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHH
Confidence 666777777777666655 777777888776543223345788999999999999999999999976543 3333444
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 148 FLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 148 i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
....++.+..++++..+ ++|..|..+|+.+...+......++.++.
T Consensus 425 ~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 425 VVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888998865 79999999999999999999998888765
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=0.00014 Score=61.42 Aligned_cols=171 Identities=9% Similarity=-0.022 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045377 23 SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGV---HTYTAIISLILVCPLVCLL-WIFMDKLLP 98 (256)
Q Consensus 23 g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 98 (256)
+-++.|.|...+++-++..-.+...+--......+|...+++.|+.++ +..+.++....+++..... ...+++.+.
T Consensus 273 s~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~ 352 (530)
T KOG2864|consen 273 SFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL 352 (530)
T ss_pred CcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHH
Confidence 445778899998888887677777777777777887776666665555 5556666666677665555 777888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHH
Q 045377 99 LIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLIL---PMFASSFLILCFHIPACWTLVFKLELGSMGAALA 175 (256)
Q Consensus 99 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a 175 (256)
++++++=....+...+++.|.+.|+.+++.+..+++.+.++.+ --.....+..+..++++++++.+ +|..|..+|
T Consensus 353 lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlA 430 (530)
T KOG2864|consen 353 LYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILA 430 (530)
T ss_pred HHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHH
Confidence 8876543344566889999999999999999999999765422 22233445567778889999955 778999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 045377 176 FSLSTWLNVILLGLYMMYSS 195 (256)
Q Consensus 176 ~~i~~~~~~~~~~~~~~~~~ 195 (256)
+.+...+.-+....++++..
T Consensus 431 NiiNm~lRIlys~~fI~~~y 450 (530)
T KOG2864|consen 431 NIINMSLRILYSLRFIRHYY 450 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988888888877776643
No 38
>COG4267 Predicted membrane protein [Function unknown]
Probab=92.34 E-value=6.3 Score=33.48 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=91.9
Q ss_pred HHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHH
Q 045377 42 FSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPAL 121 (256)
Q Consensus 42 ~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~ 121 (256)
..+..|++...+..+|.+.=+||+++....+.-+.......+...+.. +-...++.. ..|=...+...
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~s-----i~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYS-----IVYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchh-----HHHHHHHHHHH
Confidence 456777888888888888877888777776655554444443333321 111122221 11212334444
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 122 FGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 122 ~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
......=....++.+.+|.+....+-.++.++.+.+...+- +.+..|..++..++..+.......+..+.
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45555555567777888888888888899998888877765 56899999999999999988888777654
No 39
>COG4267 Predicted membrane protein [Function unknown]
Probab=84.13 E-value=26 Score=30.00 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---hcCchh
Q 045377 66 RKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQ---TQSLIL 141 (256)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~---~~g~~~ 141 (256)
++.....++.+.-..-.-..+++. .++++.+..+++-++ .++++.-.......++..+.+.++ =.++.+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~-------~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE-------YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344455554444444555555 888999999987655 333344333344444444444444 346677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cccccchHHHHHHHHHH
Q 045377 142 PMFASSFLILCFHIPACWTLVFK-LELGSMGAALAFSLSTW 181 (256)
Q Consensus 142 ~~~~~~i~~~~~~i~~~~~li~~-~~~g~~G~~~a~~i~~~ 181 (256)
........-.+.|-++.++.... |++--.|...|..++-.
T Consensus 393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vl 433 (467)
T COG4267 393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVL 433 (467)
T ss_pred hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHH
Confidence 77777777778888888887753 44444555555554433
No 40
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=75.96 E-value=50 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045377 64 QFRKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLP 98 (256)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 98 (256)
++++.+++.+++...+.........+ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999888777665 777777766
No 41
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=75.07 E-value=66 Score=29.24 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAI 32 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~ 32 (256)
++.|+...+.+++-+.++=| ++++..|..++
T Consensus 11 i~lQl~sRllTFvlN~lllR~lsp~ilGi~nv 42 (549)
T PF04506_consen 11 ILLQLLSRLLTFVLNQLLLRFLSPEILGIANV 42 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHH
Confidence 56788888888877777666 69997776544
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=57.00 E-value=64 Score=25.32 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 045377 2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQA 59 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~ 59 (256)
.++++...+....|+.+++++...+-.+.-....-..-....+...+.+...|..++.
T Consensus 215 ~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 215 FLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999950000000000000000001899999999999999875
No 43
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=56.55 E-value=65 Score=25.32 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhcCCC
Q 045377 87 CLLWIFMDKLLPLIGQD 103 (256)
Q Consensus 87 ~~~~~~~~~l~~~~~~~ 103 (256)
++++.+..+++.+++.|
T Consensus 165 ~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 165 ALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHhcccchhhhhHH
Confidence 33477777888888743
No 44
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=52.99 E-value=38 Score=21.93 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHH
Q 045377 50 GGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPL 85 (256)
Q Consensus 50 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (256)
...+..+-..+.+||.|++++.-+++..++.+..+.
T Consensus 38 i~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 38 IVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred heechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 334456667788999999999999888776544433
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.18 E-value=2.1e+02 Score=25.48 Aligned_cols=181 Identities=10% Similarity=-0.023 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccc---hHHHHHHHHHH
Q 045377 2 VAVSVLQYLLQVVSTVMV-GHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFR---KLGVHTYTAII 77 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i-~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~---~~~~~~~~~~~ 77 (256)
+..|+...+.++.-+.++ -+++++.+|..++=..+.+- -..-++.-.........|.++.| +..+..+.+-.
T Consensus 18 i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s----TiLFlsREair~A~l~~gs~~~d~~te~~n~~wlS~~ 93 (530)
T KOG2864|consen 18 IRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS----TILFLSREAIRLAELRIGSEPADTWTEFINLLWLSVP 93 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH----HHHHhhHHHHHHHhccCCCCCCccHHHHHHhhhhhhh
Confidence 356777777777555544 44799998887665554432 22333444444455555544433 44555555555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377 78 SLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP 156 (256)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~ 156 (256)
+..+..+++.-+ ..+....-.....|. + .....+...+.....+...+--..|..-+.+......-...++...
T Consensus 94 L~~~i~~~~i~~wl~~~~s~d~i~~~p~--y---~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i 168 (530)
T KOG2864|consen 94 LQTAINVACIYFWLGFLSSSDEISYSPL--Y---AFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCI 168 (530)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhcCch--H---hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555554433 222211100001111 1 1222333333333333333333334333444444444444444433
Q ss_pred HHHH-HHhh-cccccchHHHHHHHHHHHHHHHHHHHH
Q 045377 157 ACWT-LVFK-LELGSMGAALAFSLSTWLNVILLGLYM 191 (256)
Q Consensus 157 ~~~~-li~~-~~~g~~G~~~a~~i~~~~~~~~~~~~~ 191 (256)
..+. +..+ ..+++.-.++|.....+...+...+++
T Consensus 169 ~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 169 VLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222 2222 345566666776665555555344433
No 46
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.68 E-value=34 Score=24.08 Aligned_cols=27 Identities=7% Similarity=0.098 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccc
Q 045377 170 MGAALAFSLSTWLNVILLGLYMMYSSA 196 (256)
Q Consensus 170 ~G~~~a~~i~~~~~~~~~~~~~~~~~~ 196 (256)
.|..++.+++-+...++..|+++|++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444455555555433
No 47
>PF14184 YrvL: Regulatory protein YrvL
Probab=44.05 E-value=1.2e+02 Score=21.74 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 045377 73 YTAIISLILVCPLVCLLWIFMDKLLPLIGQD-PVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL 151 (256)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 151 (256)
..............+.......-+.++++-+ +...+...-.+.....+.|+..+..++...+.-.+.++... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 3344444455555555566666777877654 22233333334455678888888888877776553343333 33555
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHH
Q 045377 152 CFHIPACWTLVFKLELGSMGAALAFSL 178 (256)
Q Consensus 152 ~~~i~~~~~li~~~~~g~~G~~~a~~i 178 (256)
.+....++.-++..+.=+.++.+.+..
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~ 109 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLS 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHH
Confidence 677777777776655445555555444
No 48
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=41.36 E-value=1.5e+02 Score=25.07 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=21.2
Q ss_pred ccCCCCCHHHHHhHHHHHHHHhHHHHHHHHH
Q 045377 199 KTRAPVSKESLLAIGQFFRLAIPSAIMVCLK 229 (256)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (256)
+..+..++..+...++.+|.++|+.+-.+=.
T Consensus 76 ~~~~~l~~~i~~~~~~~lk~~vPa~iYalqN 106 (345)
T KOG2234|consen 76 KSLKSLSKEILAAPRETLKVSVPALIYALQN 106 (345)
T ss_pred hhhhhcCHHHHhChHHHHHHHHHHHHHHHhh
Confidence 3344455555667779999999998655444
No 49
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=38.01 E-value=1.8e+02 Score=22.00 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045377 54 TLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQ-DPVISHEARKYSMWLIPALFGSAILKPLTR 132 (256)
Q Consensus 54 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 132 (256)
|.+-|.+.++=+++.++..+.....-...++. +++=+..-+..+..+ +.+..-.+..|+ ..+. +.....-...
T Consensus 16 P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~--l~~N~i~~~~~~~~~~~~~~~~lai~y~---~~~~-P~sf~~wyrp 89 (177)
T PF04144_consen 16 PCFYHDISEEIPEEFQRLVKRAYYLWLFLAIT--LFWNFIACLALLIAGGSGSDFGLAILYL---LLGT-PASFFCWYRP 89 (177)
T ss_pred CeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcceehHHHHHH---HHHh-HHHHHHHHHH
Confidence 45556665555666677666665543333221 111111222233322 222222232222 2222 3333344566
Q ss_pred HHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHhh-cccccchHHHHH
Q 045377 133 YFQTQSL-ILPMFASSFLILCFHIPACWTLVFK-LELGSMGAALAF 176 (256)
Q Consensus 133 ~l~~~g~-~~~~~~~~i~~~~~~i~~~~~li~~-~~~g~~G~~~a~ 176 (256)
.+++..+ .......-.....+.+..+.+...+ |+.|..|...+.
T Consensus 90 lY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~ai 135 (177)
T PF04144_consen 90 LYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITAI 135 (177)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 6666554 4444444555666667776666654 456666654443
No 50
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.64 E-value=1.9e+02 Score=23.86 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhccc
Q 045377 181 WLNVILLGLYMMYSSA 196 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (256)
++.++..+++++|++|
T Consensus 302 ~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 302 AVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3344445556665543
No 51
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=36.49 E-value=1.6e+02 Score=21.21 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045377 169 SMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILI 237 (256)
Q Consensus 169 ~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 237 (256)
.....+|+.++..+.-....+.+.+-|++.+ .+ .-..|......+.+.++...+....
T Consensus 67 ~~ri~~aS~~a~lisq~~d~~if~~lk~~~~--~r---------~lw~R~~~St~isq~iDt~if~~ia 124 (145)
T PF02592_consen 67 TPRIALASLIAFLISQLLDVYIFSKLKRKTK--GR---------SLWLRNNGSTAISQLIDTVIFITIA 124 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc---------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666677766666655544321111 10 1234566677777777777766543
No 52
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=32.25 E-value=2.4e+02 Score=23.58 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhccc
Q 045377 181 WLNVILLGLYMMYSSA 196 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (256)
++.++..+++++|++|
T Consensus 300 ~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 300 ILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHccc
Confidence 3334444555665543
No 53
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=27.64 E-value=1.2e+02 Score=27.06 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 045377 7 LQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQA 59 (256)
Q Consensus 7 ~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~ 59 (256)
..++++..|+..+...+++.-..+++...-..++ .....-.-....|+.+..
T Consensus 40 ~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sPl~gyL 91 (493)
T KOG1330|consen 40 LVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASPLFGYL 91 (493)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHHHHHHH
Confidence 4567888899888887777777777776666665 444444444556777654
No 54
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=26.75 E-value=4.2e+02 Score=22.93 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHH
Q 045377 4 VSVLQYLLQVVSTV-MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILV 82 (256)
Q Consensus 4 ~~~~~~~~~~~~~~-~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (256)
.++++.+...+-+. .+..+|+.++|.-+.+..+.-++ + .-...+.+++-.+|+.....+..+.....+
T Consensus 66 NNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilv---F--------aEVlPKt~Aa~~perva~~~s~~l~~l~~l 134 (423)
T COG4536 66 NNLVNILASALATILGIRLYGDAGVAIATGVLTFVILV---F--------AEVLPKTIAALYPERVALPSSFILAILVRL 134 (423)
T ss_pred ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH---H--------HHhcchHHhhhChhhhhhhhhHHHHHHHHH
Confidence 34455554444444 34446877766554444443332 1 134445566667788777666666665555
Q ss_pred HHHHHHH-HHHHHHHHhhcCCC
Q 045377 83 CPLVCLL-WIFMDKLLPLIGQD 103 (256)
Q Consensus 83 ~~~~~~~-~~~~~~l~~~~~~~ 103 (256)
.-|+..+ -.+..-++++++.+
T Consensus 135 ~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 135 FGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhCcC
Confidence 5555544 77788888888654
No 55
>PRK03612 spermidine synthase; Provisional
Probab=24.08 E-value=5.4e+02 Score=23.26 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 045377 143 MFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMM 192 (256)
Q Consensus 143 ~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~ 192 (256)
....++-+.+-.+...++++ |.+|..+..+....-++...+...+..+
T Consensus 151 y~~ntlGa~~G~l~~~~vLl--p~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLL--PRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455555 7789888777666666666555444443
No 56
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.34 E-value=1.6e+02 Score=19.29 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=18.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 166 ELGSMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 166 ~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
++.-.|.+|..++.-++..+++++...++
T Consensus 29 ~~~~Lgm~~lvI~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFVCCKK 57 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667877777766666665554443
No 57
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.05 E-value=1.4e+02 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377 169 SMGAALAFSLSTWLNVILLGLYMMYS 194 (256)
Q Consensus 169 ~~G~~~a~~i~~~~~~~~~~~~~~~~ 194 (256)
..|.+.-..+.-.+..++++.|++|+
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444455555555555544
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.89 E-value=3.4e+02 Score=22.56 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhcc
Q 045377 180 TWLNVILLGLYMMYSS 195 (256)
Q Consensus 180 ~~~~~~~~~~~~~~~~ 195 (256)
.++.++..+++++|++
T Consensus 307 m~~i~~~~~~~fkrk~ 322 (324)
T PRK09546 307 LVVLIGGVAWWLKRSK 322 (324)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344444455666554
No 59
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.56 E-value=4.3e+02 Score=22.02 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc
Q 045377 171 GAALAFSLSTWLNVILLGLYMMYSSA 196 (256)
Q Consensus 171 G~~~a~~i~~~~~~~~~~~~~~~~~~ 196 (256)
|.+++..+ .++.+++.+++++|++|
T Consensus 297 Gy~~~l~~-m~~~~~~~~~~frrk~W 321 (322)
T COG0598 297 GYPIALIL-MLLLALLLYLYFRRKGW 321 (322)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHhcCc
Confidence 54555444 34444444555655543
No 60
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=21.50 E-value=2.9e+02 Score=19.23 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045377 171 GAALAFSLSTWLNVILLGLY 190 (256)
Q Consensus 171 G~~~a~~i~~~~~~~~~~~~ 190 (256)
.+..++..+..+..+.+-..
T Consensus 3 avlvaa~~~~~~G~lWY~pl 22 (126)
T PF08570_consen 3 AVLVAAIAAFVLGFLWYGPL 22 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34566777777777777654
No 61
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=20.35 E-value=2.3e+02 Score=17.60 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=7.1
Q ss_pred HHhHHHHHHHHhHHH
Q 045377 209 LLAIGQFFRLAIPSA 223 (256)
Q Consensus 209 ~~~~~~~~~~~~p~~ 223 (256)
++.+|+-...+++..
T Consensus 53 k~nf~~~~~~~~~~~ 67 (77)
T PF04854_consen 53 KQNFKQSLLLGLILL 67 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
Done!