Query 045377
Match_columns 256
No_of_seqs 174 out of 1613
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 22:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 10.4 1.7E+02 0.012 17.0 8.6 25 212-236 70-94 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 7.8 74 0.0054 18.5 1.3 19 213-231 62-80 (91)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.6 1.6E+02 0.012 15.1 2.4 25 56-80 2-26 (53)
4 d2a65a1 f.54.1.1 (A:5-513) Na( 7.0 4.9E+02 0.035 19.9 14.3 23 210-232 442-464 (509)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.3 2.7E+02 0.02 16.3 8.6 26 212-237 76-101 (107)
6 d1m56d_ f.23.8.1 (D:) Bacteria 5.9 1.9E+02 0.014 14.0 4.4 31 59-89 3-33 (42)
7 d1nkzb_ f.3.1.1 (B:) Light-har 4.4 2.4E+02 0.017 13.4 2.7 26 64-89 7-32 (41)
8 d1fs1b1 a.157.1.1 (B:86-140) C 4.1 3E+02 0.022 14.0 2.3 21 52-72 34-54 (55)
9 d2hw4a1 d.322.1.1 (A:5-122) Ph 4.0 1.3E+02 0.0098 18.4 0.8 18 57-74 90-107 (118)
10 d1fftc_ f.25.1.1 (C:) Cytochro 4.0 4.1E+02 0.03 17.0 3.6 27 46-72 58-84 (185)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.36 E-value=1.7e+02 Score=17.04 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 045377 212 IGQFFRLAIPSAIMVCLKWWSMEIL 236 (256)
Q Consensus 212 ~~~~~~~~~p~~~~~~~~~~~~~~~ 236 (256)
.-++....+|..+-..+..-+...+
T Consensus 70 ~LEiiWTviP~lILi~l~~pS~~~l 94 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGAFSLPVL 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888877666655555443
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.83 E-value=74 Score=18.45 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 045377 213 GQFFRLAIPSAIMVCLKWW 231 (256)
Q Consensus 213 ~~~~~~~~p~~~~~~~~~~ 231 (256)
-+.....+|..+-..+...
T Consensus 62 lEi~WtiIP~iil~~iav~ 80 (91)
T d1fftb2 62 VEAVVWTVPILIIIFLAVL 80 (91)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHH
Confidence 3667777888776555433
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.59 E-value=1.6e+02 Score=15.10 Aligned_cols=25 Identities=12% Similarity=-0.177 Sum_probs=13.9
Q ss_pred HHhhhCCcccchHHHHHHHHHHHHH
Q 045377 56 CGQAYGAAQFRKLGVHTYTAIISLI 80 (256)
Q Consensus 56 ~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (256)
.++.+|++..|.++........+..
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~ 26 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGA 26 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhh
Confidence 3566676666665555555544433
No 4
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.02 E-value=4.9e+02 Score=19.91 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHH
Q 045377 210 LAIGQFFRLAIPSAIMVCLKWWS 232 (256)
Q Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~ 232 (256)
+.++-.+|.-.|..+....-+..
T Consensus 442 ~~~~~~~~~i~Pi~l~~ili~~~ 464 (509)
T d2a65a1 442 RIYYYVMRYITPAFLAVLLVVWA 464 (509)
T ss_dssp THHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHheeeeeHhhhhheeehhH
Confidence 45677888888987776554433
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.25 E-value=2.7e+02 Score=16.26 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045377 212 IGQFFRLAIPSAIMVCLKWWSMEILI 237 (256)
Q Consensus 212 ~~~~~~~~~p~~~~~~~~~~~~~~~~ 237 (256)
.-++...-+|..+-..+..-++..+.
T Consensus 76 ~lEi~WTviP~lIL~~laipSl~~Ly 101 (107)
T d3ehbb2 76 PIEVIWTLVPVLILVAIGAFSLPILF 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888777776666655443
No 6
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.91 E-value=1.9e+02 Score=14.00 Aligned_cols=31 Identities=3% Similarity=-0.030 Sum_probs=19.6
Q ss_pred hhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045377 59 AYGAAQFRKLGVHTYTAIISLILVCPLVCLL 89 (256)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (256)
..|.-|.+.-++.+..-.++..-.++.+.++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~ 33 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAA 33 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777766555544433
No 7
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.44 E-value=2.4e+02 Score=13.40 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=15.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 045377 64 QFRKLGVHTYTAIISLILVCPLVCLL 89 (256)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (256)
+.|+..+.+-...+....++++.=++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~L 32 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFL 32 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 45667777777777666555554444
No 8
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=3e+02 Score=13.97 Aligned_cols=21 Identities=0% Similarity=-0.176 Sum_probs=13.4
Q ss_pred HHHHHHhhhCCcccchHHHHH
Q 045377 52 LETLCGQAYGAAQFRKLGVHT 72 (256)
Q Consensus 52 ~~~~~s~~~g~~~~~~~~~~~ 72 (256)
+...++..+..+..++.|+.+
T Consensus 34 ~c~~vA~~ikgKt~eeiR~~f 54 (55)
T d1fs1b1 34 TCKTVANMIKGKTPEEIRKTF 54 (55)
T ss_dssp HHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 334555556557888888764
No 9
>d2hw4a1 d.322.1.1 (A:5-122) Phosphohistidine phosphatase 1, PHP14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=1.3e+02 Score=18.43 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=13.7
Q ss_pred HhhhCCcccchHHHHHHH
Q 045377 57 GQAYGAAQFRKLGVHTYT 74 (256)
Q Consensus 57 s~~~g~~~~~~~~~~~~~ 74 (256)
|+-+|+.|+++.++.++.
T Consensus 90 S~~fG~AdH~~t~eiL~~ 107 (118)
T d2hw4a1 90 SMAYGPAQHAISTEKIKA 107 (118)
T ss_dssp CTTTCBCCHHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHH
Confidence 466788888888887764
No 10
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=4.1e+02 Score=17.04 Aligned_cols=27 Identities=4% Similarity=-0.252 Sum_probs=14.2
Q ss_pred HhhHhHHHHHHHhhhCCcccchHHHHH
Q 045377 46 SGMAGGLETLCGQAYGAAQFRKLGVHT 72 (256)
Q Consensus 46 ~~l~~~~~~~~s~~~g~~~~~~~~~~~ 72 (256)
.-.++.......++..+||+++.+...
T Consensus 58 Ll~SS~~~~~a~~~~~~~~~~~~~~~L 84 (185)
T d1fftc_ 58 LLFSSITYGMAAIAMYKNNKSQVISWL 84 (185)
T ss_dssp HGGGTTTTTSGGGTTTTCCGGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555556666666655544
Done!