Query 045378
Match_columns 99
No_of_seqs 119 out of 468
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00182 Glyco_hydro_19: Chiti 100.0 1E-37 2.3E-42 239.2 7.9 96 1-97 1-96 (232)
2 cd00325 chitinase_glyco_hydro_ 100.0 2.6E-36 5.5E-41 231.6 8.1 93 2-95 1-93 (230)
3 KOG4742 Predicted chitinase [G 100.0 1E-34 2.3E-39 228.7 5.4 97 1-97 65-161 (286)
4 COG3179 Predicted chitinase [G 94.7 0.032 7E-07 43.0 3.0 52 1-66 3-55 (206)
5 cd00442 lysozyme_like lysozyme 80.2 0.79 1.7E-05 30.4 0.8 20 54-73 1-20 (105)
6 cd08327 CARD_RAIDD Caspase act 59.0 4.4 9.5E-05 27.4 0.7 40 1-40 35-82 (94)
7 PF00432 Prenyltrans: Prenyltr 48.4 27 0.00059 19.6 2.8 26 49-75 2-27 (44)
8 PRK15321 putative type III sec 43.3 35 0.00076 24.2 3.2 23 21-43 13-35 (120)
9 PF08261 Carcinustatin: Carcin 42.5 10 0.00022 15.3 0.2 7 74-80 2-8 (8)
10 cd08785 CARD_CARD9-like Caspas 41.1 24 0.00052 23.4 2.1 38 1-38 30-79 (86)
11 cd08810 CARD_BCL10 Caspase act 36.5 26 0.00055 23.3 1.6 35 1-36 30-72 (84)
12 PF15182 OTOS: Otospiralin 35.1 15 0.00033 23.9 0.4 33 23-65 26-59 (69)
13 COG1942 Uncharacterized protei 29.1 93 0.002 19.8 3.3 38 45-89 13-50 (69)
14 PF09447 Cnl2_NKP2: Cnl2/NKP2 25.3 56 0.0012 21.0 1.8 16 1-16 19-34 (67)
15 CHL00183 petJ cytochrome c553; 25.3 2E+02 0.0043 18.7 4.7 37 25-62 65-105 (108)
16 cd00491 4Oxalocrotonate_Tautom 25.1 65 0.0014 18.4 1.9 39 44-89 10-48 (58)
17 PF01616 Orbi_NS3: Orbivirus N 23.4 58 0.0013 25.0 1.8 18 42-59 37-54 (195)
18 COG1689 Uncharacterized protei 21.3 1.1E+02 0.0024 24.6 3.1 30 45-87 3-32 (274)
19 PF01830 Peptidase_C7: Peptida 21.3 2.4E+02 0.0053 22.2 4.8 60 26-88 92-169 (243)
20 PF06796 NapE: Periplasmic nit 21.2 71 0.0015 20.0 1.6 13 45-57 10-22 (56)
No 1
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=1e-37 Score=239.19 Aligned_cols=96 Identities=54% Similarity=1.067 Sum_probs=86.1
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCcCCHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeee
Q 045378 1 IISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGY 80 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~~~c~~~gfYTY~~fi~Aa~~fp~F~~tG~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wgl 80 (99)
|||+++||+|||+||++.||+|+||||++||+|+++||+|+++|+++++||||||||||++|||+|+|...+.++++|||
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCCCCCCC
Q 045378 81 CYIRQVSPASSDYCYPY 97 (99)
Q Consensus 81 c~~~E~~~~~~~YC~~s 97 (99)
|+++|.++. .+||+.+
T Consensus 81 c~~~e~~~~-~~y~~~~ 96 (232)
T PF00182_consen 81 CYKREKGAN-SDYCNRN 96 (232)
T ss_dssp S-SB-SS-S-SGG--TT
T ss_pred ccccccCCc-cccccCc
Confidence 999998866 8899763
No 2
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=2.6e-36 Score=231.63 Aligned_cols=93 Identities=58% Similarity=1.134 Sum_probs=89.7
Q ss_pred CCHHHHhhhcCCCCCCCCCCCCcCCHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeeee
Q 045378 2 ISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYC 81 (99)
Q Consensus 2 vt~~~F~~lfp~rn~~~c~~~gfYTY~~fi~Aa~~fp~F~~tG~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wglc 81 (99)
||+++||+||||||+..||+++||||++||+|+++||+|+++|+++++||||||||||++|||+|+|..+++++++||||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCC
Q 045378 82 YIRQVSPASSDYCY 95 (99)
Q Consensus 82 ~~~E~~~~~~~YC~ 95 (99)
+++|+++. .+||+
T Consensus 81 ~~~e~~~~-~~~~~ 93 (230)
T cd00325 81 DKSETGPP-SSYCD 93 (230)
T ss_pred ccccCCCc-ccccc
Confidence 99999977 67775
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=1e-34 Score=228.68 Aligned_cols=97 Identities=52% Similarity=1.014 Sum_probs=93.8
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCcCCHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeee
Q 045378 1 IISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGY 80 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~~~c~~~gfYTY~~fi~Aa~~fp~F~~tG~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wgl 80 (99)
+||+++||+||+++|.+.|++++||||++||.|+++||+|+++|+..+.||||||||||++|||+|||..+++|+++|||
T Consensus 65 ~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~f 144 (286)
T KOG4742|consen 65 SVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGF 144 (286)
T ss_pred cccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCccccCc
Confidence 68999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCCCCCCC
Q 045378 81 CYIRQVSPASSDYCYPY 97 (99)
Q Consensus 81 c~~~E~~~~~~~YC~~s 97 (99)
||++|+++.+..|||.|
T Consensus 145 c~~~e~s~~~~~YC~~s 161 (286)
T KOG4742|consen 145 CYKEEISPSSGRYCDAS 161 (286)
T ss_pred ccccccChhhhccCCcc
Confidence 99999998448999976
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=94.67 E-value=0.032 Score=42.95 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=35.7
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCcCCHHHHHHHHh-cCCCCCCCCChHHHHHHHHHHHHhhhcccCC
Q 045378 1 IISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQ-AFPGFGNSGNETMRKREIAAFFAQTGHETTG 66 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~~~c~~~gfYTY~~fi~Aa~-~fp~F~~tG~~~~~krElAAFfAh~shET~g 66 (99)
.||+.+|.+|+|+.-. -.-.++.|+. ....|+- +.+-.+|.||||+.|||+|
T Consensus 3 ~i~e~~~~ki~p~a~k---------~~~~v~~al~~~l~~~gi-----~~p~r~AmFlAQ~~HESgg 55 (206)
T COG3179 3 TITEVDLRKIFPKARK---------EFVDVIVALQPALDEAGI-----TTPLRQAMFLAQVMHESGG 55 (206)
T ss_pred chhHHHHHHhcchhhh---------hhHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhhcCC
Confidence 3789999999987643 2233444444 2344442 3477899999999999983
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=80.21 E-value=0.79 Score=30.38 Aligned_cols=20 Identities=15% Similarity=-0.172 Sum_probs=17.0
Q ss_pred HHHHHhhhcccCCCccCCCC
Q 045378 54 AAFFAQTGHETTGGWTDAPG 73 (99)
Q Consensus 54 AAFfAh~shET~gg~~~a~~ 73 (99)
|+|+++++||+.+++...++
T Consensus 1 a~~~~i~~~E~~~~~~~~~~ 20 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDR 20 (105)
T ss_pred ChhhhhhhcccCCCcccccC
Confidence 67999999999999877654
No 6
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=58.98 E-value=4.4 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=27.8
Q ss_pred CCCHHHHhhhcCCCCCC--------CCCCCCcCCHHHHHHHHhcCCCC
Q 045378 1 IISREMFEDLLPYRNDA--------RCPARGFYTYDAFIEAAQAFPGF 40 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~~--------~c~~~gfYTY~~fi~Aa~~fp~F 40 (99)
|||+++.+.|-...... --|.+|...|+.|++|++.||-.
T Consensus 35 IlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~~l 82 (94)
T cd08327 35 ILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFPWV 82 (94)
T ss_pred CCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH
Confidence 56777777666433221 14667889999999999988743
No 7
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=48.38 E-value=27 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhcccCCCccCCCCCC
Q 045378 49 RKREIAAFFAQTGHETTGGWTDAPGGE 75 (99)
Q Consensus 49 ~krElAAFfAh~shET~gg~~~a~~g~ 75 (99)
.++++..|+...-+ ..|||...|+++
T Consensus 2 d~~~~~~~l~~~Q~-~dGGf~~~~~~~ 27 (44)
T PF00432_consen 2 DVEKLIRFLLSCQN-PDGGFGGRPGGE 27 (44)
T ss_dssp HHHHHHHHHHHTBB-TTSSBBSSTTSS
T ss_pred CHHHHHHHHHHHCC-CCCCCCCCCCCC
Confidence 57899999999888 678999888764
No 8
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=43.33 E-value=35 Score=24.16 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=17.7
Q ss_pred CCCcCCHHHHHHHHhcCCCCCCC
Q 045378 21 ARGFYTYDAFIEAAQAFPGFGNS 43 (99)
Q Consensus 21 ~~gfYTY~~fi~Aa~~fp~F~~t 43 (99)
|...=-|++|..++.+.|....+
T Consensus 13 g~~vdlydAF~Q~l~~LP~la~S 35 (120)
T PRK15321 13 GGDVDLYDAFYQRLLALPESASS 35 (120)
T ss_pred CCcchHHHHHHHHHHhCCcccCc
Confidence 33456799999999999986543
No 9
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=42.49 E-value=10 Score=15.29 Aligned_cols=7 Identities=43% Similarity=1.198 Sum_probs=4.8
Q ss_pred CCceeee
Q 045378 74 GEYAWGY 80 (99)
Q Consensus 74 g~~~wgl 80 (99)
|||+.||
T Consensus 2 gpy~fgl 8 (8)
T PF08261_consen 2 GPYSFGL 8 (8)
T ss_pred CcccccC
Confidence 6777775
No 10
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=41.11 E-value=24 Score=23.43 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=28.0
Q ss_pred CCCHHHHhhhcCCCCCC-----------CCCCCCcCCHHHHHHHHh-cCC
Q 045378 1 IISREMFEDLLPYRNDA-----------RCPARGFYTYDAFIEAAQ-AFP 38 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~~-----------~c~~~gfYTY~~fi~Aa~-~fp 38 (99)
|+|+++-+.|....+.. -.|.+|...|.+|++|.. .||
T Consensus 30 VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~~Af~~F~~aL~~~yp 79 (86)
T cd08785 30 VLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGKRGYVAFLESLEFYYP 79 (86)
T ss_pred CCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCH
Confidence 67888888888543311 256788999999999987 565
No 11
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=36.45 E-value=26 Score=23.33 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCCHHHHhhhcCCCCC--------CCCCCCCcCCHHHHHHHHhc
Q 045378 1 IISREMFEDLLPYRND--------ARCPARGFYTYDAFIEAAQA 36 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~--------~~c~~~gfYTY~~fi~Aa~~ 36 (99)
|+|+++-+.|...... .-.| +|...|.+|++|+..
T Consensus 30 ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~ 72 (84)
T cd08810 30 ILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRR 72 (84)
T ss_pred CCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHH
Confidence 5777777777643322 1167 889999999999863
No 12
>PF15182 OTOS: Otospiralin
Probab=35.12 E-value=15 Score=23.86 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=24.5
Q ss_pred CcCCHHHHHHHHhcCCCCCCCCChHHHHHHHH-HHHHhhhcccC
Q 045378 23 GFYTYDAFIEAAQAFPGFGNSGNETMRKREIA-AFFAQTGHETT 65 (99)
Q Consensus 23 gfYTY~~fi~Aa~~fp~F~~tG~~~~~krElA-AFfAh~shET~ 65 (99)
.|+.|-.+.+++.+|+.. .||| +||||..--++
T Consensus 26 DFW~YveyFrtlGAY~~i----------ndmARtfFAh~plG~t 59 (69)
T PF15182_consen 26 DFWNYVEYFRTLGAYNQI----------NDMARTFFAHFPLGDT 59 (69)
T ss_pred HHHHHHHHHHHhccHHHH----------HHHHHHHHhhCccccc
Confidence 488888888888888764 4555 59999866554
No 13
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=29.14 E-value=93 Score=19.81 Aligned_cols=38 Identities=26% Similarity=0.182 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeeeeEEeecCCC
Q 045378 45 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPA 89 (99)
Q Consensus 45 ~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wglc~~~E~~~~ 89 (99)
.++.+|++||+=+-.+..|+-|=-.. +=...++|+.+.
T Consensus 13 ~~~~~K~~la~~vT~~~~~~lg~~~~-------~i~Viieev~~~ 50 (69)
T COG1942 13 LDEEQKAELAAEVTEVTVETLGKDPS-------AIHVIIEEVPPE 50 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcc-------cEEEEEEecChh
Confidence 56678999999999999999863111 246778888653
No 14
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=25.31 E-value=56 Score=20.95 Aligned_cols=16 Identities=50% Similarity=0.661 Sum_probs=13.5
Q ss_pred CCCHHHHhhhcCCCCC
Q 045378 1 IISREMFEDLLPYRND 16 (99)
Q Consensus 1 ivt~~~F~~lfp~rn~ 16 (99)
|||-++|-.+||.+..
T Consensus 19 iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 19 IISLEQFRKLFPRRLR 34 (67)
T ss_pred ccCHHHHHHHccccCC
Confidence 6899999999987754
No 15
>CHL00183 petJ cytochrome c553; Provisional
Probab=25.28 E-value=2e+02 Score=18.69 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCHHHHHHHHh----cCCCCCCCCChHHHHHHHHHHHHhhhc
Q 045378 25 YTYDAFIEAAQ----AFPGFGNSGNETMRKREIAAFFAQTGH 62 (99)
Q Consensus 25 YTY~~fi~Aa~----~fp~F~~tG~~~~~krElAAFfAh~sh 62 (99)
.+.+.++..++ .+|+|+.. =++...+.|++|+...++
T Consensus 65 ~~~~~i~~~i~~G~~~MP~f~~~-Ls~~ei~~i~aYi~~~~~ 105 (108)
T CHL00183 65 NSIEAITYQVTNGKNAMPAFGGR-LSDEDIEDVANYVLSQAE 105 (108)
T ss_pred CCHHHHHHHHHcCccccccccCC-CCHHHHHHHHHHHHHhhh
Confidence 34455555554 37888532 345677889999887655
No 16
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=25.05 E-value=65 Score=18.36 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeeeeEEeecCCC
Q 045378 44 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPA 89 (99)
Q Consensus 44 G~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wglc~~~E~~~~ 89 (99)
|-+..+||+|++=+.+...+.-|-- ++ .=+..++|+.+.
T Consensus 10 grt~eqk~~l~~~i~~~l~~~~g~~---~~----~v~V~i~e~~~~ 48 (58)
T cd00491 10 GRTDEQKRELIERVTEAVSEILGAP---EA----TIVVIIDEMPKE 48 (58)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcC---cc----cEEEEEEEeCch
Confidence 5568899999999999988876421 11 135667777643
No 17
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=23.38 E-value=58 Score=24.98 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHHHHh
Q 045378 42 NSGNETMRKREIAAFFAQ 59 (99)
Q Consensus 42 ~tG~~~~~krElAAFfAh 59 (99)
+||.++..|+|=|||=|-
T Consensus 37 tTGA~~~~K~EKaAyga~ 54 (195)
T PF01616_consen 37 TTGATEAQKNEKAAYGAA 54 (195)
T ss_pred CccCchhhhHHHHHHHHH
Confidence 569999999999998653
No 18
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.31 E-value=1.1e+02 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHhhhcccCCCccCCCCCCceeeeeEEeecC
Q 045378 45 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVS 87 (99)
Q Consensus 45 ~~~~~krElAAFfAh~shET~gg~~~a~~g~~~wglc~~~E~~ 87 (99)
++.+.+..+-.|+-|.-||.| ||||++.+-
T Consensus 3 ~~~i~l~rvi~fi~~RrhedG-------------Gy~f~~~Lp 32 (274)
T COG1689 3 SRYINLNRVIEFIEKRRHEDG-------------GYCFVSQLP 32 (274)
T ss_pred chhhhHHHHHHHHHHhhcCCC-------------CeEEeccCc
Confidence 345678889999999999998 899998764
No 19
>PF01830 Peptidase_C7: Peptidase C7 family; InterPro: IPR002704 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C7 (clan CA). These are found in fungi and viruses (Hypoviridae). They are involved in transmissible hypovirulence and may indicate the possible origins of hypovirulence-associated dsRNAs [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=21.25 E-value=2.4e+02 Score=22.22 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=39.9
Q ss_pred CHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhcccCC---------------CccCCCCC---CceeeeeEEeecC
Q 045378 26 TYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG---------------GWTDAPGG---EYAWGYCYIRQVS 87 (99)
Q Consensus 26 TY~~fi~Aa~~fp~F~~tG~~~~~krElAAFfAh~shET~g---------------g~~~a~~g---~~~wglc~~~E~~ 87 (99)
..-+-++|...=|.++ +.+.+-|||-+-|-|..|.+.= |-.++-+| .+-+||||..-|-
T Consensus 92 eHPavlaA~~grprrC---s~eq~treLD~~Fl~lV~~~~P~~Psy~~arppr~vrgLcsSr~gdlaqFGqGYCyLsai~ 168 (243)
T PF01830_consen 92 EHPAVLAAYLGRPRRC---SLEQRTRELDSQFLHLVHSGLPRRPSYMLARPPRPVRGLCSSRSGDLAQFGQGYCYLSAIV 168 (243)
T ss_pred CCHHHHHHHcCCCccc---cHHHHHHHHHHHHHHHHHcCCCCCCceeeccCCcccccccccCcCcHHHhCCceeeeehhc
Confidence 3446667776677776 5688999999999999997652 12222233 3446888877665
Q ss_pred C
Q 045378 88 P 88 (99)
Q Consensus 88 ~ 88 (99)
.
T Consensus 169 ~ 169 (243)
T PF01830_consen 169 D 169 (243)
T ss_pred h
Confidence 3
No 20
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=21.20 E-value=71 Score=19.96 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHH
Q 045378 45 NETMRKREIAAFF 57 (99)
Q Consensus 45 ~~~~~krElAAFf 57 (99)
+...+|+|+-+|+
T Consensus 10 ~~~~k~~E~~~fl 22 (56)
T PF06796_consen 10 DKSTKRSELKAFL 22 (56)
T ss_pred ccchhHHHHHHHH
Confidence 3567999999987
Done!