BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045379
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/361 (64%), Positives = 283/361 (78%), Gaps = 30/361 (8%)
Query: 3 ASNSTGVSVKKYNRDGFFIDKNGKLRSFNHKKLSRKRCGSLRGKGWKYGSGFVDGIFPVL 62
+N G +VK Y ++GF ID+ GKL+ FN KKLSRKRCGSLRG+GWKYGSGFVDGIFPVL
Sbjct: 26 VTNLNGATVKSYKQEGFVIDERGKLKRFNRKKLSRKRCGSLRGRGWKYGSGFVDGIFPVL 85
Query: 63 SPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVS 122
SP AQ+IL F+Q+E D + + D +LP THA+WDDLINVSVQLRLNKKWD I+L+ C
Sbjct: 86 SPIAQKILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILV-CEW 144
Query: 123 IL--------------LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG 168
IL LI+AYGQK +K+AE Y++LL+SR +PTEDTYALL+KAYCM+G
Sbjct: 145 ILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAG 204
Query: 169 LLEKAEAVFREMRKYGLPPSAV---VYNSYIDGLLK-GGNPQKAVEIFQRMKRDCCQPST 224
L+E+AE V EM+ + + P + VYN+YI+GL+K GN ++A+++FQRMKRD C+P+T
Sbjct: 205 LIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 264
Query: 225 ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQ 284
ETY LMINLYGKASKS+M+ KL+ EMRSH+CKPNICTYTALVNAFAREGLCE+AEEIFEQ
Sbjct: 265 ETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQ 324
Query: 285 LQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRASYNIMVDAYGRAGL 333
LQ G+EPDVY YNALME+Y + S M HMGCEPDRASYNIMVDAYGRAGL
Sbjct: 325 LQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 384
Query: 334 H 334
H
Sbjct: 385 H 385
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 12/238 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
L+I YG+ S + Y E+ +C P TY L+ A+ GL EKAE +F ++++
Sbjct: 269 LMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 328
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
GL P VYN+ ++ + G P A EIF M+ C+P +Y +M++ YG+A A
Sbjct: 329 GLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDA 388
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
+F EM+ P + ++ L++A+++ + E I +++ G+EPD + N+++
Sbjct: 389 EAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 448
Query: 304 Y----------RLISRMHMG-CEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVKHY 350
Y ++++ M G C D ++YNI+++ YG+AG E + VEL K++
Sbjct: 449 YGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLE-RIEELFVELKEKNF 505
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++++AYG+ LH AE + E+ PT ++ LLL AY + + K EA+ +EM +
Sbjct: 374 IMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSEN 433
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+ P V NS ++ + G K +I M+ C TY ++IN+YGKA
Sbjct: 434 GVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERI 493
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
+LF E++ +P++ T+T+ + A++R+ L + E+FE++ +G PD L+ A
Sbjct: 494 EELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA 553
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L+E+Y + A + + C P +Y +++ AY +GL AEAVF EM++ G
Sbjct: 340 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLG 399
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P+ + + K + K I + M + +P T M+NLYG+ +
Sbjct: 400 IAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKME 459
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K+ EM + C +I TY L+N + + G E EE+F +L+ PDV + + + AY
Sbjct: 460 KILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAY 519
Query: 305 R-----------LISRMHMGCEPDRASYNIMVDA 327
+ GC PD + +++ A
Sbjct: 520 SRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA 553
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL 185
I AY +K L+ K + E++DS C P T +LL A +E+ +V R M K G+
Sbjct: 516 IGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHK-GV 574
Query: 186 PPSAVV 191
S++V
Sbjct: 575 TVSSLV 580
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 11/187 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
PT TY +++ C G +E A +F EM+ GL P V YNS IDG K G V
Sbjct: 260 PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 319
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F+ MK CC+P TY +IN + K K + L+ + EM+ + KPN+ +Y+ LV+AF +
Sbjct: 320 FEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 379
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
EG+ ++A + + ++ G+ P+ Y Y +L+ +A+RL + M +G E + +
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439
Query: 321 YNIMVDA 327
Y ++D
Sbjct: 440 YTALIDG 446
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I+ +G+ + E+ D C P TY L+ +C G L +REM+ G
Sbjct: 303 MIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNG 362
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P+ V Y++ +D K G Q+A++ + M+R P+ TYT +I+ K A
Sbjct: 363 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF 422
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+L NEM + N+ TYTAL++ +EAEE+F ++ AG+ P++ +YNAL+ +
Sbjct: 423 RLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 11/195 (5%)
Query: 149 RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208
R P + LL + G + + F++M G P+ YN ID + K G+ + A
Sbjct: 222 RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAA 281
Query: 209 VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268
+F+ MK P T TY MI+ +GK + + F EM+ C+P++ TY AL+N
Sbjct: 282 RGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341
Query: 269 FAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-----------RLISRMHMGCEPD 317
F + G E + +++G G++P+V +Y+ L++A+ + +G P+
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 401
Query: 318 RASYNIMVDAYGRAG 332
+Y ++DA + G
Sbjct: 402 EYTYTSLIDANCKIG 416
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +Y+ L+ A+C G++++A + +MR+ GL P+ Y S ID K GN A +
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M + + + TYT +I+ A + A +LF +M + PN+ +Y AL++ F +
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNAL---------MEAYRLI--SRMHMGCEPDRAS 320
+ A E+ +L+G GI+PD+ Y +EA +++ G + +
Sbjct: 485 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 544
Query: 321 YNIMVDAYGRAG 332
Y ++DAY ++G
Sbjct: 545 YTTLMDAYFKSG 556
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 11/197 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C+P + L G+LE+A F +M+++ + P N + K G
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 247
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
F+ M +P+ TY +MI+ K A LF EM+ P+ TY ++++ F
Sbjct: 248 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDR 318
+ G ++ FE+++ EPDV YNAL+ + ++ +G E P+
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367
Query: 319 ASYNIMVDAYGRAGLHE 335
SY+ +VDA+ + G+ +
Sbjct: 368 VSYSTLVDAFCKEGMMQ 384
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 6/230 (2%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++A+ ++ + ++A Y+++ +P E TY L+ A C G L A + EM + G
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ + V Y + IDGL ++A E+F +M P+ +Y +I+ + KA AL
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+L NE++ KP++ Y + E A+ + +++ GI+ + Y LM+AY
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 305 ----RLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVKHY 350
+H+ E + V + L +G C LV +V ++
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTF--CVLIDGLCKNKLVSKAVDYF 600
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 106 LRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC 165
L++ +W+ + + LI+ K+AE + ++ + IP +Y L+ +
Sbjct: 429 LQVGVEWNVVTYTA-----LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 483
Query: 166 MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE 225
+ +++A + E++ G+ P ++Y ++I GL + A + MK + ++
Sbjct: 484 KAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSL 543
Query: 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285
YT +++ Y K+ L L +EM+ + + T+ L++ + L +A + F ++
Sbjct: 544 IYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI 603
Query: 286 QGA-GIEPDVYAYNALME----------AYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
G++ + + A+++ A L +M G PDR +Y ++D + G
Sbjct: 604 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 662
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 156 TYALLLKAYCMSGLLEKAEAVF-REMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214
T+ +L+ C + L+ KA F R +GL +A ++ + IDGL K + A +F++
Sbjct: 579 TFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQ 638
Query: 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274
M + P YT +++ K AL L ++M K ++ YT+LV +
Sbjct: 639 MVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQ 698
Query: 275 CEEAEEIFEQLQGAGIEPD-VYAYNALMEAYRL 306
++A E++ G GI PD V + L + Y L
Sbjct: 699 LQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 731
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
R+ C P + + ++ A++ F++M+ + P + L++ FA+ G +
Sbjct: 185 RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD 244
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALM---------EAYR-LISRMHM-GCEPDRASYNIMV 325
+ + F+ + GAG P V+ YN ++ EA R L M G PD +YN M+
Sbjct: 245 DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMI 304
Query: 326 DAYGRAG 332
D +G+ G
Sbjct: 305 DGFGKVG 311
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE + E++ P TY L+ +CM L++A+ +F M
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P V YN+ I+G K +E+F+ M R +T TYT +I+ + +AS A
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQ 435
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
+F +M S PNI TY L++ + G E+A +FE LQ + +EPD+Y YN + E
Sbjct: 436 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGM 495
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G +PD +YN M+ + + GL E
Sbjct: 496 CKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 23/263 (8%)
Query: 97 DDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDT 156
DD +N+ ++ NK P V I + YG+ S A ++L+ + P T
Sbjct: 257 DDALNLFTEMD-NKGIRPDVFTYSSLISCLCNYGRWS---DASRLLSDMLERKINPNVVT 312
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
+ L+ A+ G L +AE +F EM + + P+ V YNS I+G +A +IF M
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 372
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
C P TY +IN + KA K ++LF +M N TYT L++ F + C+
Sbjct: 373 SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRLISRMHMGCEPDRASYNI 323
A+ +F+Q+ G+ P++ YN L++ + + + M EPD +YNI
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM--EPDIYTYNI 490
Query: 324 MVDAYGRAGLHEGK----CSYSL 342
M + +AG E CS SL
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSL 513
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P TY ++ C G + A + +M K + V+Y++ ID L K + A+
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 210 EIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
+F M +P TY+ +I+ YG+ S A +L ++M K PN+ T+ +L+
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD---ASRLLSDMLERKINPNVVTFNSLI 317
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMG-----------CE 315
+AFA+EG EAE++F+++ I+P++ YN+L+ + + R+ C
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 316 PDRASYNIMVDAYGRA 331
PD +YN +++ + +A
Sbjct: 378 PDVVTYNTLINGFCKA 393
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P+ T LL +C + +A A+ +M + G P V + + + GL + +AV +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+RM CQP TY +IN K + +AL L N+M K + ++ Y+ ++++ +
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F ++ GI PDV+ Y++L+ +A RL+S M P+ +
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312
Query: 321 YNIMVDAYGRAG 332
+N ++DA+ + G
Sbjct: 313 FNSLIDAFAKEG 324
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ + + + A+ VF++M G+ P+ + YN+ +DGL K G +KA+ +F+ +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ +P TY +M KA K LF + KP++ Y +++ F ++GL
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRMHMGCE--PDRASYNI 323
EEA +F +++ G PD YN L+ A+ LI M C D ++Y +
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMR-SCRFAGDASTYGL 595
Query: 324 MVDAYGRAGLHEGKCSYSLVEL 345
+ D LH+G+ +E+
Sbjct: 596 VTDM-----LHDGRLDKGFLEV 612
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y+ ++ + C ++ A +F EM G+ P Y+S I L G A + M
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T+ +I+ + K K A KLF+EM PNI TY +L+N F +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362
Query: 277 EAEEIFEQLQGAGIEPDVYAYNAL-------------MEAYRLISRMHMGCEPDRASYNI 323
EA++IF + PDV YN L ME +R +SR G + +Y
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR--RGLVGNTVTYTT 420
Query: 324 MVDAYGRA 331
++ + +A
Sbjct: 421 LIHGFFQA 428
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI + Q S A+ + +++ P TY LL C +G LEKA VF ++K
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P YN +G+ K G + ++F + +P Y MI+ + K A
Sbjct: 481 MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAY 540
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
LF +M+ P+ TY L+ A R+G + E+ ++++ D Y + +
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTD 598
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ SR P+ ++ LL A + + +M G+ + YN I+ L +
Sbjct: 55 EMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRS 114
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A+ I +M + PS T ++N + ++ A+ L ++M +P+ T+T
Sbjct: 115 QLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 174
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG 313
LV+ + EA + E++ G +PD+ Y A++ A L+++M G
Sbjct: 175 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 234
Query: 314 -CEPDRASYNIMVDA 327
E D Y+ ++D+
Sbjct: 235 KIEADVVIYSTVIDS 249
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ +C GL E+A +F +M++ G P + YN+ I L+ G+ + E+
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577
Query: 212 FQRMKRDCCQPSTETYTLMINLY--GKASKSFM 242
+ M+ TY L+ ++ G+ K F+
Sbjct: 578 IKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFL 610
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 184 GLPPSAVVYNSYIDGLLKGG----NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239
G+ S + Y+ Y + L + +AV++F M + PS ++ +++ K K
Sbjct: 21 GIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKK 80
Query: 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299
+ + +M N+ TY ++N R A I ++ G P + N+
Sbjct: 81 FDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNS 140
Query: 300 LM----------EAYRLISRM-HMGCEPDRASYNIMV 325
L+ EA L+ +M MG +PD ++ +V
Sbjct: 141 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 12/195 (6%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P E Y +++ GLL+K VF EM G+ S Y + I+ + G + ++
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA-LKLFNEMRSHKCKPNICTYTALVNA 268
E+ RMK + PS TY +IN + + L LF EMR +P+I TY L++A
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSA 256
Query: 269 FAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PD 317
A GL +EAE +F + GI PD+ Y+ L+E + + R+ C+ PD
Sbjct: 257 CAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPD 316
Query: 318 RASYNIMVDAYGRAG 332
SYN++++AY ++G
Sbjct: 317 ITSYNVLLEAYAKSG 331
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 15/251 (5%)
Query: 96 WDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED 155
W+ L+ + ++R IV + L+ A + L +AE + + D +P
Sbjct: 228 WEGLLGLFAEMRHEGIQPDIVTYNT----LLSACAIRGLGDEAEMVFRTMNDGGIVPDLT 283
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY+ L++ + LEK + EM G P YN ++ K G+ ++A+ +F +M
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+ C P+ TY++++NL+G++ + +LF EM+S P+ TY L+ F G
Sbjct: 344 QAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYF 403
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHMG-CEPDRASYNIM 324
+E +F + IEPD+ Y ++ +A +++ M P +Y +
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGV 463
Query: 325 VDAYGRAGLHE 335
++A+G+A L+E
Sbjct: 464 IEAFGQAALYE 474
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 11/223 (4%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+L+EAY + K+A + ++ + C P +TY++LL + SG + +F EM+
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS 381
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
P A YN I+ +GG ++ V +F M + +P ETY +I GK A
Sbjct: 382 NTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDA 441
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-- 301
K+ M ++ P+ YT ++ AF + L EEA F + G P + +++L+
Sbjct: 442 RKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYS 501
Query: 302 --------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAGLHE 335
E+ ++SR+ G +R ++N ++AY + G E
Sbjct: 502 FARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFE 544
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+L+ +GQ + +LE+ S P TY +L++ + G ++ +F +M +
Sbjct: 357 VLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEE 416
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
+ P Y I KGG + A +I Q M + PS++ YT +I +G+A+ A
Sbjct: 417 NIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA 476
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L FN M P+I T+ +L+ +FAR GL +E+E I +L +GI + +NA +EA
Sbjct: 477 LVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEA 536
Query: 304 YRLISRMHMG-----------CEPDRASYNIMVDAYGRAGL 333
Y+ + C+PD + ++ Y A L
Sbjct: 537 YKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARL 577
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 47/259 (18%)
Query: 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREM 180
+ ++I G++ L K + E+ + +Y L+ AY +G E + + M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202
Query: 181 RKYGLPPSAVVYNSYIDGLLKGG-NPQKAVEIFQRMKRDCCQPST--------------- 224
+ + PS + YN+ I+ +GG + + + +F M+ + QP
Sbjct: 203 KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGL 262
Query: 225 --------------------ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
TY+ ++ +GK + L EM S P+I +Y
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR--------MHM---G 313
L+ A+A+ G +EA +F Q+Q AG P+ Y+ L+ + R + M
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 314 CEPDRASYNIMVDAYGRAG 332
+PD A+YNI+++ +G G
Sbjct: 383 TDPDAATYNILIEVFGEGG 401
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 13/146 (8%)
Query: 203 GNPQKAVEIFQRMKRDC-CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
G+ Q+++ +F+ M+R C+P+ YT+MI+L G+ L++F+EM S ++ +
Sbjct: 119 GDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFS 178
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-----------YRLISRM 310
YTAL+NA+ R G E + E+ ++++ I P + YN ++ A L + M
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238
Query: 311 -HMGCEPDRASYNIMVDAYGRAGLHE 335
H G +PD +YN ++ A GL +
Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGD 264
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 101/200 (50%), Gaps = 10/200 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+IEA+GQ +L+++A + + + P+ +T+ LL ++ GL++++EA+ + G
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+P + +N+ I+ +GG ++AV+ + M++ C P T ++++Y A
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECR 582
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+ F EM++ P+I Y ++ + + ++ E+ E++ N + +
Sbjct: 583 EQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLS----------NRVSNIH 632
Query: 305 RLISRMHMGCEPDRASYNIM 324
++I +M G D +++ I+
Sbjct: 633 QVIGQMIKGDYDDDSNWQIV 652
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 86/180 (47%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I A G+ LH+ A + + +P+ Y +++A+ + L E+A F M + G
Sbjct: 428 IIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVG 487
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
PS ++S + +GG +++ I R+ + +T+ I Y + K A+
Sbjct: 488 SNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV 547
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K + +M +C P+ T A+++ ++ L +E E FE+++ + I P + Y ++ Y
Sbjct: 548 KTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVY 607
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 11/221 (4%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI +K L +A ++ C P +Y LL +C +++A M
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G P V YN+ + L K G + AVEI ++ C P TY +I+ KA K+ A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-- 301
+KL +EMR+ KP+ TY++LV +REG +EA + F + + GI P+ +N++M
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 302 -----EAYR----LISRMHMGCEPDRASYNIMVDAYGRAGL 333
+ R L+ ++ GC+P+ SY I+++ G+
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 15/203 (7%)
Query: 143 LELLD-SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
LE+L+ S +P TY +++ YC +G + A +V M + P V YN+ + L
Sbjct: 160 LEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCD 216
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
G ++A+E+ RM + C P TYT++I + S A+KL +EMR C P++ T
Sbjct: 217 SGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVT 276
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL----------MEAYRLISRM- 310
Y LVN +EG +EA + + +G +P+V +N + M+A +L++ M
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 311 HMGCEPDRASYNIMVDAYGRAGL 333
G P ++NI+++ R GL
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGL 359
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
S C P T+ ++L++ C +G AE + +M + G PS V +N I+ L + G +
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
A++I ++M + CQP++ +Y +++ + K K A++ M S C P+I TY ++
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHM-GCEP 316
A ++G E+A EI QL G P + YN +++ A +L+ M +P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482
Query: 317 DRASYNIMVDAYGRAG 332
D +Y+ +V R G
Sbjct: 483 DTITYSSLVGGLSREG 498
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 17/211 (8%)
Query: 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195
K+A +L C P TY +L++A C + A + EMR G P V YN
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280
Query: 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255
++G+ K G +A++ M CQP+ T+ +++ + A KL +M
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------- 304
P++ T+ L+N R+GL A +I E++ G +P+ +YN L+ +
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400
Query: 305 ---RLISRMHMGCEPDRASYNIMVDAYGRAG 332
R++SR GC PD +YN M+ A + G
Sbjct: 401 YLERMVSR---GCYPDIVTYNTMLTALCKDG 428
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LIEA + S A E+ D C P TY +L+ C G L++A +M
Sbjct: 244 ILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS 303
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G P+ + +N + + G A ++ M R PS T+ ++IN + A
Sbjct: 304 GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRA 363
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-- 301
+ + +M H C+PN +Y L++ F +E + A E E++ G PD+ YN ++
Sbjct: 364 IDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTA 423
Query: 302 --------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVK 348
+A +++++ GC P +YN ++D +AG GK L E+ K
Sbjct: 424 LCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG-KTGKAIKLLDEMRAK 478
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 142 YLELLDSR-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200
YLE + SR C P TY +L A C G +E A + ++ G P + YN+ IDGL
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNE----------- 249
K G KA+++ M+ +P T TY+ ++ + K A+K F+E
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAV 520
Query: 250 ------------------------MRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285
M + CKPN +YT L+ A EG+ +EA E+ +L
Sbjct: 521 TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Query: 286 QGAGI 290
G+
Sbjct: 581 CNKGL 585
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
K M H P+I T L+ F R G +A +I E L+G+G PDV YN ++
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180
Query: 303 AY----------RLISRMHMGCEPDRASYNIMVDAYGRAG 332
Y ++ RM + PD +YN ++ + +G
Sbjct: 181 GYCKAGEINNALSVLDRMSV--SPDVVTYNTILRSLCDSG 218
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNE 249
V N+++ +++ G ++ + + M P T +I + + K+ A K+
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162
Query: 250 MRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-------- 301
+ P++ TY +++ + + G A + +++ + PDV YN ++
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219
Query: 302 --EAYRLISRM-HMGCEPDRASYNIMVDAYGR 330
+A ++ RM C PD +Y I+++A R
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 20/268 (7%)
Query: 77 VDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNK-KWDPIVLMSCVSILLIEAYGQKSLH 135
V N I D F + +W ++ V ++R K+D +C ++L A ++ L
Sbjct: 246 VTYNVILDVFGKM---GRSWRKILGVLDEMRSKGLKFDEF---TCSTVL--SACAREGLL 297
Query: 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195
++A+ + EL P TY LL+ + +G+ +A +V +EM + P +V YN
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357
Query: 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255
+ ++ G ++A + + M + P+ TYT +I+ YGKA K ALKLF M+ C
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYR 305
PN CTY A+++ ++ E ++ ++ G P+ +N ++ R
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477
Query: 306 LISRMHM-GCEPDRASYNIMVDAYGRAG 332
+ M G EPDR ++N ++ AYGR G
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCG 505
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 4/208 (1%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ +G+ ++ +A E+ ++ C TY L+ AY +G ++A V M K G
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P+A+ Y + ID K G +A+++F MK C P+T TY +++L GK S+S +
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMI 441
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K+ +M+S+ C PN T+ ++ +G+ + +F +++ G EPD +N L+ AY
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501
Query: 305 ----RLISRMHMGCEPDRASYNIMVDAY 328
+ M E RA +N V Y
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTY 529
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA-LKLFNEM 250
Y + + + G +KA+++F+RMK P+ TY ++++++GK +S+ L + +EM
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272
Query: 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--------- 301
RS K + T + +++A AREGL EA+E F +L+ G EP YNAL+
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVY 332
Query: 302 -EAYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVK 348
EA ++ M C D +YN +V AY RAG K + ++E+ K
Sbjct: 333 TEALSVLKEMEENSCPADSVTYNELVAAYVRAGF--SKEAAGVIEMMTK 379
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 53/233 (22%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
LLD R Y +L AY +G EKA +F M++ G P+ V YN +D K G
Sbjct: 207 LLDVR------AYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGR 260
Query: 205 P------------------------------------QKAVEIFQRMKRDCCQPSTETYT 228
++A E F +K +P T TY
Sbjct: 261 SWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYN 320
Query: 229 LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288
++ ++GKA AL + EM + C + TY LV A+ R G +EA + E +
Sbjct: 321 ALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKK 380
Query: 289 GIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRASYNIMVDAYGR 330
G+ P+ Y +++AY +L M GC P+ +YN ++ G+
Sbjct: 381 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGK 433
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 48/262 (18%)
Query: 119 SCVSI--LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG-------- 168
+CV+ L+ A +K + E ++ PTE +Y+L+L+ Y G
Sbjct: 524 ACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERI 583
Query: 169 ---------------------------LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
L +E F +K+G P V++NS + +
Sbjct: 584 ENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTR 643
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
+A I + ++ D P TY ++++Y + + + A ++ + + KP++ +
Sbjct: 644 NNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVS 703
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM----------- 310
Y ++ F R GL +EA + ++ GI P ++ YN + Y +
Sbjct: 704 YNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA 763
Query: 311 HMGCEPDRASYNIMVDAYGRAG 332
C P+ ++ ++VD Y RAG
Sbjct: 764 KNDCRPNELTFKMVVDGYCRAG 785
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA 189
G K + K + E+ P DT+ L+ AY G A ++ EM + G
Sbjct: 467 GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV 526
Query: 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK---------- 239
YN+ ++ L + G+ + + MK +P+ +Y+LM+ Y K
Sbjct: 527 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENR 586
Query: 240 --------SFMALKL-----------------FNEMRSHKCKPNICTYTALVNAFAREGL 274
S+M L+ F + H KP++ + ++++ F R +
Sbjct: 587 IKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNM 646
Query: 275 CEEAEEIFEQLQGAGIEPDVYAYNALMEAY-------------RLISRMHMGCEPDRASY 321
++AE I E ++ G+ PD+ YN+LM+ Y + + + + +PD SY
Sbjct: 647 YDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL--KPDLVSY 704
Query: 322 NIMVDAYGRAGLHE 335
N ++ + R GL +
Sbjct: 705 NTVIKGFCRRGLMQ 718
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 68/128 (53%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ Y ++ KAE L S+ P +Y ++K +C GL+++A + EM + G
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P YN+++ G G + ++ + M ++ C+P+ T+ ++++ Y +A K A+
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAM 791
Query: 245 KLFNEMRS 252
+++++
Sbjct: 792 DFVSKIKT 799
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 194 SYIDGLLKGGNPQKAVEIFQRM----KRDCCQPSTETYTLMINLYGKASKSFMALKLFNE 249
S + GL G+ ++AV +F+ + + + + + + G+ S+ +A KL ++
Sbjct: 141 SLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDK 200
Query: 250 MRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR 309
+ + ++ YT +++A++R G E+A ++FE+++ G P + YN +++ + + R
Sbjct: 201 IPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGR 260
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 21/270 (7%)
Query: 87 DSLPPTHATWDDLINV----------SVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHK 136
D PT T++ ++NV L K D I + LI + SLH+
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196
+A + E+ + + TY LL Y S ++A V EM G PS V YNS I
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK 256
+ G +A+E+ +M +P TYT +++ + +A K A+ +F EMR+ CK
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRL 306
PNICT+ A + + G E +IF+++ G+ PD+ +N L+ E +
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 307 ISRM-HMGCEPDRASYNIMVDAYGRAGLHE 335
M G P+R ++N ++ AY R G E
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFE 506
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 149/326 (45%), Gaps = 52/326 (15%)
Query: 28 RSFNHKKLSRKRCGSLRGKGWKYGSGFVDGIFPVLSPTAQQILR------FVQREVDS-- 79
R+ N ++ + R +L GK W Y LSP QQ+LR F ++DS
Sbjct: 71 RNRNRTRIGKSRDPNL-GKPWSYHG---------LSPQGQQVLRSLIEPNFDSGQLDSVL 120
Query: 80 NTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAE 139
+ +++ F P +T +L+ L +KK+D L + A+ K
Sbjct: 121 SELFEPFKDKP--ESTSSELLAFLKGLGFHKKFD----------LALRAFDWFMKQKD-- 166
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
Y +LD+ + A+++ G + A +F +++ G Y S I
Sbjct: 167 --YQSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL-KLFNEMRSHKCKPN 258
G ++AV +F++M+ D C+P+ TY +++N++GK + + L +M+S P+
Sbjct: 219 ANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPD 278
Query: 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLIS 308
TY L+ R L +EA ++FE+++ AG D YNAL++ Y ++++
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLN 338
Query: 309 RMHM-GCEPDRASYNIMVDAYGRAGL 333
M + G P +YN ++ AY R G+
Sbjct: 339 EMVLNGFSPSIVTYNSLISAYARDGM 364
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ YG+ K+A E++ + P+ TY L+ AY G+L++A + +M + G
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P Y + + G + G + A+ IF+ M+ C+P+ T+ I +YG K +
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ------------------ 286
K+F+E+ P+I T+ L+ F + G+ E +F++++
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499
Query: 287 -----------------GAGIEPDVYAYNALMEAY----------RLISRMHMG-CEPDR 318
AG+ PD+ YN ++ A ++++ M G C+P+
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Query: 319 ASYNIMVDAYG 329
+Y ++ AY
Sbjct: 560 LTYCSLLHAYA 570
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 46/250 (18%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC---------------MSGL 169
++ A + + +++E E+ D RC P E TY LL AY SG+
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589
Query: 170 LE--------------------KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
+E +AE F E+++ G P NS + + KA
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+ MK PS TY ++ ++ +++ + ++ E+ + KP+I +Y ++ A+
Sbjct: 650 GVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAY 709
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR-----------MHMGCEPDR 318
R +A IF +++ +GI PDV YN + +Y S + GC P++
Sbjct: 710 CRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769
Query: 319 ASYNIMVDAY 328
+YN +VD Y
Sbjct: 770 NTYNSIVDGY 779
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L+ +GQ + + + E+ + +P +T+ L+ AY G E+A V+R M G
Sbjct: 460 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P YN+ + L +GG +++ ++ M+ C+P+ TY +++ Y + +
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
L E+ S +P LV ++ L EAE F +L+ G PD+ N+++ Y
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIY 639
Query: 305 ---RLISRMH--------MGCEPDRASYNIMVDAYGRAG 332
+++++ + G P A+YN ++ + R+
Sbjct: 640 GRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 11/222 (4%)
Query: 120 CVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFRE 179
C I+ YG + + + E+ P T+ LL + +G+ + VF+E
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479
Query: 180 MRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239
M++ G P +N+ I + G+ ++A+ +++RM P TY ++ +
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299
+ K+ EM +CKPN TY +L++A+A + E++ IEP
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 300 LM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGR 330
L+ EA R S + G PD + N MV YGR
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGR 641
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 84/176 (47%)
Query: 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN 193
L +AE + EL + P T ++ Y ++ KA V M++ G PS YN
Sbjct: 609 LLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYN 668
Query: 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253
S + + + K+ EI + + +P +Y +I Y + ++ A ++F+EMR+
Sbjct: 669 SLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNS 728
Query: 254 KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR 309
P++ TY + ++A + + EEA + + G P+ YN++++ Y ++R
Sbjct: 729 GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNR 784
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 5/174 (2%)
Query: 113 DPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEK 172
D L S VSI YG++ + KA + + P+ TY L+ + S K
Sbjct: 628 DITTLNSMVSI-----YGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682
Query: 173 AEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232
+E + RE+ G+ P + YN+ I + + A IF M+ P TY I
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742
Query: 233 LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
Y S A+ + M H C+PN TY ++V+ + + +EA+ E L+
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
+A + F + K ++I++ GK + A +FN ++ ++ +YT+L+
Sbjct: 156 RAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLI 215
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-----------RLISRMHM-GC 314
+AFA G EA +F++++ G +P + YN ++ + L+ +M G
Sbjct: 216 SAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGI 275
Query: 315 EPDRASYNIMVDAYGRAGLHE 335
PD +YN ++ R LH+
Sbjct: 276 APDAYTYNTLITCCKRGSLHQ 296
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE Y E++ P TY+ L+ +CM L++A+ +F M
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V YN+ I+G K + VE+F+ M + +T TYT +I+ + +A A
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
+F +M S PNI TY L++ + G E+A +FE LQ + +EP +Y YN ++E
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G +PD YN M+ + R GL E
Sbjct: 516 CKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKE 557
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 19/216 (8%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
++++ + P T+ L+ A+ G L +AE ++ EM K + P Y+S I+G
Sbjct: 320 DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
+A +F+ M C P+ TY +IN + KA + ++LF EM N TYT
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYT 439
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRLISRM 310
L++ F + C+ A+ +F+Q+ G+ P++ YN L++ + + R
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499
Query: 311 HMGCEPDRASYNIMVDAYGRAGLHEGK----CSYSL 342
M EP +YNIM++ +AG E CS SL
Sbjct: 500 KM--EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 533
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 14/212 (6%)
Query: 134 LHKKA-EFTYL--ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190
LH KA E L ++ C P TY +++ C G ++ A + +M + + V
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVV 261
Query: 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250
+Y++ ID L K + A+ +F M+ +P+ TY+ +I+ + A +L ++M
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RL 306
K PN+ T+ AL++AF +EG EAE++++++ I+PD++ Y++L+ + RL
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 307 ISRMHM-------GCEPDRASYNIMVDAYGRA 331
HM C P+ +YN +++ + +A
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKA 413
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P+ T + LL YC + A A+ +M + G P + + + I GL +AV +
Sbjct: 153 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 212
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM + CQP+ TY +++N K +A L N+M + K + N+ Y+ ++++ +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F +++ G+ P+V Y++L+ +A RL+S M P+ +
Sbjct: 273 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT 332
Query: 321 YNIMVDAYGRAG 332
+N ++DA+ + G
Sbjct: 333 FNALIDAFVKEG 344
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ + + + A+ VF++M G+ P+ + YN+ +DGL K G +KA+ +F+ +
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+R +P+ TY +MI KA K LF + KP++ Y +++ F R+GL
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 276 EEAEEIFEQLQGAGIEPD 293
EEA+ +F +++ G PD
Sbjct: 557 EEADALFRKMREDGPLPD 574
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y+ ++ + C + A +F EM G+ P+ + Y+S I L A + M
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T+ +I+ + K K A KL++EM P+I TY++L+N F +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE 315
EA+ +FE + P+V YN L+ + R+ G E
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVE 421
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +L+ S L+ A +F M K PS +N + + K + + ++M+
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
R + TY ++IN + + S+ +AL L +M +P+I T ++L+N +
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMV 325
+A + +Q+ G PD + L+ EA L+ RM GC+P+ +Y ++V
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232
Query: 326 DAYGRAG 332
+ + G
Sbjct: 233 NGLCKRG 239
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 86/194 (44%), Gaps = 11/194 (5%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
++ SR +P+ + LL A + ++ +M++ G+ + YN I+ +
Sbjct: 76 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 135
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
A+ + +M + +PS T + ++N Y + A+ L ++M +P+ T+T
Sbjct: 136 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 195
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG- 313
L++ EA + +++ G +P++ Y ++ A+ L+++M
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255
Query: 314 CEPDRASYNIMVDA 327
E + Y+ ++D+
Sbjct: 256 IEANVVIYSTVIDS 269
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG-LPPSA 189
P Y ++ +C GL E+A+A+FR+MR+ G LP S
Sbjct: 538 PDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSG 576
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE Y E++ P+ TY+ L+ +CM L++A+ +F M
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P V YN+ I G K ++ +E+F+ M + +T TY ++I +A MA
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
++F EM S PNI TY L++ + G E+A +FE LQ + +EP +Y YN ++E
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G +PD +YN M+ + R G E
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 85/148 (57%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY +L++ +G + A+ +F+EM G+PP+ + YN+ +DGL K G +KA+ +F+ +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+R +P+ TY +MI KA K LF + KP++ Y +++ F R+G
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 552
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEA 303
EEA+ +F++++ G P+ YN L+ A
Sbjct: 553 EEADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 134 LHKKAEFTYLELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA 189
LH KA + L+D C P TY +++ C G + A + +M + L P
Sbjct: 198 LHNKAS-EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV 256
Query: 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKL 246
++YN+ IDGL K + A+ +F+ M+ +P+ TY+ +I+ YG+ S A +L
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD---ASRL 313
Query: 247 FNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRL 306
++M K P++ T++AL++AF +EG EAE++++++ I+P + Y++L+ + +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 307 ISRMHMG-----------CEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344
R+ C PD +YN ++ +G C Y VE
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLI---------KGFCKYKRVE 413
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
++++ + P T++ L+ A+ G L +AE ++ EM K + PS V Y+S I+G
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 375
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
+A ++F+ M C P TY +I + K + +++F EM N TY
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRLISRM 310
L+ + G C+ A+EIF+++ G+ P++ YN L++ + + R
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495
Query: 311 HMGCEPDRASYNIMVDAYGRAG 332
M EP +YNIM++ +AG
Sbjct: 496 KM--EPTIYTYNIMIEGMCKAG 515
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T + LL YC S + +A A+ +M G P+ V +N+ I GL +A+ +
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM CQP TY +++N K + +A L N+M K +P + Y +++ +
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F++++ GI P+V Y++L+ +A RL+S M PD +
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328
Query: 321 YNIMVDAYGRAG 332
++ ++DA+ + G
Sbjct: 329 FSALIDAFVKEG 340
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ C ++ A +F+EM G+ P+ V Y+S I L G A +
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M P T++ +I+ + K K A KL++EM P+I TY++L+N F
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDR-----------AS 320
+EA+++FE + PDV YN L++ + R+ G E R +
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 321 YNIMVDAYGRAG 332
YNI++ +AG
Sbjct: 434 YNILIQGLFQAG 445
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI+ Q A+ + E++ P TY LL C +G LEKA VF +++
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
+ P+ YN I+G+ K G + ++F + +P Y MI+ + + A
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293
LF EM+ PN Y L+ A R+G E + E+ ++++ G D
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229
L+ A A+F EM K PS + ++ + + K + + ++M+ + TY++
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
+IN + + S+ +AL + +M +PNI T ++L+N + EA + +Q+ G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 290 IEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+P+ +N L+ EA LI RM GC+PD +Y ++V+ + G
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ SR P+ ++ LL A + ++ +M+ G+P + Y+ I+ +
Sbjct: 71 EMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRS 130
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A+ + +M + +P+ T + ++N Y + + A+ L ++M +PN T+
Sbjct: 131 QLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFN 190
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG 313
L++ EA + +++ G +PD+ Y ++ A+ L+++M G
Sbjct: 191 TLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG 250
Query: 314 -CEPDRASYNIMVDA 327
EP YN ++D
Sbjct: 251 KLEPGVLIYNTIIDG 265
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 87 DSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELL 146
D +PP T++ L++ L N K + +++ Y Q+S + +TY ++
Sbjct: 460 DGVPPNIMTYNTLLD---GLCKNGKLE--------KAMVVFEYLQRSKMEPTIYTYNIMI 508
Query: 147 DSRCI--------------------PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP 186
+ C P Y ++ +C G E+A+A+F+EM++ G
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568
Query: 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY--GKASKSFMAL 244
P++ YN+ I L+ G+ + + E+ + M+ T L+ N+ G+ KSF+ +
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 628
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 129/270 (47%), Gaps = 21/270 (7%)
Query: 87 DSLPPTHATWDDLINVSVQL----RLNKKWDPIVLMSCVSILL-----IEAYGQKSLHKK 137
D L P ++L+N+ ++ L + + + C ++ I+A + H
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVS 391
Query: 138 AEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196
++ + + + + P+E TY++L+ YC + +EKA + EM + G PP Y S I
Sbjct: 392 EVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 451
Query: 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK 256
+ L K + A E+F+ +K + S+ Y +MI +GK K A+ LFNEM++
Sbjct: 452 NALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511
Query: 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-------RLISR 309
P++ Y AL++ + G+ EA + +++ G D+ ++N ++ + R I
Sbjct: 512 PDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEM 571
Query: 310 M----HMGCEPDRASYNIMVDAYGRAGLHE 335
H G +PD +YN ++ + AG+ E
Sbjct: 572 FETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++A G+ + KA + + +C PT TY ++ G EK V+ EM G
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEG 227
Query: 185 -LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
P + Y++ I K G A+ +F MK +C QP+ + YT ++ +Y K K A
Sbjct: 228 DCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKA 287
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-- 301
L LF EM+ C P + TYT L+ + G +EA ++ + G+ PDV N LM
Sbjct: 288 LDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNI 347
Query: 302 --------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHEGKCS 339
E + S M M C P SYN ++ A + H + S
Sbjct: 348 LGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS 394
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 87 DSLPPTHATWDDLIN-------VSVQLRLNKKWDPIVLMSCVSIL--LIEAYGQKSLHKK 137
DS+ P+ T+ LI+ V L L ++ D C + LI A G+ ++
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
A + EL ++ + YA+++K + G L +A +F EM+ G P YN+ +
Sbjct: 463 ANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMS 522
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
G++K G +A + ++M+ + C+ ++ +++N + + A+++F ++ KP
Sbjct: 523 GMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKP 582
Query: 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
+ TY L+ FA G+ EEA + +++ G E D Y+++++A
Sbjct: 583 DGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 47/192 (24%)
Query: 188 SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE---------------------- 225
S V + + L + KA+ +F + K C+P++
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 226 --------------TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
TY+ +I+ Y K ++ A++LF+EM+ + +P YT L+ + +
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
G E+A ++FE+++ AG P VY Y L+ EAY M G PD
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVF 340
Query: 321 YNIMVDAYGRAG 332
N +++ G+ G
Sbjct: 341 LNNLMNILGKVG 352
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 16/229 (6%)
Query: 118 MSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVF 177
+SC +++ A +++ E+ Y E++ + P T+ +++ A C +G + KA V
Sbjct: 189 LSCKPLMI--ALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 178 REMRKYGLPPSAVVYNSYIDGLLK-GGNPQ--KAVEIFQRMKRDCCQPSTETYTLMINLY 234
+M+ YG P+ V YN+ IDG K GGN + KA + + M + P+ T+ ++I+ +
Sbjct: 247 EDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGF 306
Query: 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294
K ++K+F EM KPN+ +Y +L+N G EA + +++ AG++P++
Sbjct: 307 WKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNL 366
Query: 295 YAYNALMEAY----RLISRMHM-------GCEPDRASYNIMVDAYGRAG 332
YNAL+ + L + M G P YN+++DAY + G
Sbjct: 367 ITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 14/197 (7%)
Query: 150 CIPTEDTYALLLKAYCM---SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206
C P +Y L+ YC +G + KA+AV +EM + + P+ +N IDG K N
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313
Query: 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
++++F+ M +P+ +Y +IN K A+ + ++M S +PN+ TY AL+
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM-----------HMGCE 315
N F + + +EA ++F ++G G P YN L++AY + ++ G
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433
Query: 316 PDRASYNIMVDAYGRAG 332
PD +YN ++ R G
Sbjct: 434 PDVGTYNCLIAGLCRNG 450
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 13/221 (5%)
Query: 125 LIEAY---GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181
LI+ Y G KA+ E++++ P T+ +L+ + L + VF+EM
Sbjct: 264 LIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323
Query: 182 KYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241
+ P+ + YNS I+GL GG +A+ + +M QP+ TY +IN + K
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383
Query: 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
AL +F ++ P Y L++A+ + G ++ + E+++ GI PDV YN L+
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Query: 302 ----------EAYRLISRMHMGCEPDRASYNIMVDAYGRAG 332
A +L ++ PD +++I+++ Y R G
Sbjct: 444 AGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKG 484
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 46/255 (18%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI+ + + + + E+LD P +Y L+ C G + +A ++ +M
Sbjct: 301 ILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSA 360
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+ P+ + YN+ I+G K ++A+++F +K P+T Y ++I+ Y K K
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG---------------- 287
L EM P++ TY L+ R G E A+++F+QL
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGY 480
Query: 288 ------------------AGIEPDVYAYNALMEAY------RLISRMHMGCEPDR----- 318
G++P YN +M+ Y + + M E +R
Sbjct: 481 CRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMN 540
Query: 319 -ASYNIMVDAYGRAG 332
ASYN+++ Y + G
Sbjct: 541 VASYNVLLQGYSQKG 555
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 146 LDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205
L S+ +P T+ +L++ YC G KA + +EM K GL P + YN + G K GN
Sbjct: 462 LTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521
Query: 206 QKAVEIFQRMKRD-CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
+ A + +M+++ + + +Y +++ Y + K A L NEM PN TY
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581
Query: 265 LVNAFAREGLCEEAE 279
+ +G + E
Sbjct: 582 VKEEMVDQGFVPDIE 596
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
F + + D+ C+ + L+L AY + E F+ YG SA+ + L
Sbjct: 140 FHAISMCDNVCVNSIIADMLVL-AYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIAL 198
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259
LK +++ M R QP+ T+ ++IN K K A + +M+ + C PN+
Sbjct: 199 LKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNV 258
Query: 260 CTYTALVNAFAR---EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RL 306
+Y L++ + + G +A+ + +++ + P++ +N L++ + ++
Sbjct: 259 VSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKV 318
Query: 307 ISRM-HMGCEPDRASYNIMVDAYGRAG 332
M +P+ SYN +++ G
Sbjct: 319 FKEMLDQDVKPNVISYNSLINGLCNGG 345
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK- 182
+L+E Y +K +KA E+ P TY +++K YC G L+ A + +M K
Sbjct: 475 ILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKE 534
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230
L + YN + G + G + A + M P+ TY ++
Sbjct: 535 RRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 11/194 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P+ TY +L+KA C GL++KA +F EM G P+ Y IDGL + G ++A
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEAN 356
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+ ++M +D PS TY +IN Y K + A +L M CKPN+ T+ L+
Sbjct: 357 GVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMH-MGCEPDR 318
R G +A + +++ G+ PD+ +YN L++ AY+L+S M+ EPD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 319 ASYNIMVDAYGRAG 332
++ +++A+ + G
Sbjct: 477 LTFTAIINAFCKQG 490
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 90/181 (49%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI+A + L KA + E++ C P TY +L+ C G +E+A V R+M K
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
+ PS + YN+ I+G K G A E+ M++ C+P+ T+ ++ + K + A
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
+ L M + P+I +Y L++ REG A ++ + IEPD + A++ A
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485
Query: 304 Y 304
+
Sbjct: 486 F 486
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 11/194 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P +Y++L+ C G LE+A + +M + G PS Y I L G KA
Sbjct: 262 CAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAF 321
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+F M C+P+ TYT++I+ + K A + +M + P++ TY AL+N +
Sbjct: 322 NLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGY 381
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-HMGCEPDR 318
++G A E+ ++ +P+V +N LME A L+ RM G PD
Sbjct: 382 CKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441
Query: 319 ASYNIMVDAYGRAG 332
SYN+++D R G
Sbjct: 442 VSYNVLIDGLCREG 455
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 160 LLKAYCMSGLLEKAEAVFREMRK-YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218
LL +C L A VF M K P++V Y+ I GL + G ++A + +M
Sbjct: 236 LLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295
Query: 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278
CQPST TYT++I A LF+EM CKPN+ TYT L++ R+G EEA
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEA 355
Query: 279 EEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMH-MGCEPDRASYNIMVDA 327
+ ++ I P V YNAL+ A+ L++ M C+P+ ++N +++
Sbjct: 356 NGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415
Query: 328 YGRAG 332
R G
Sbjct: 416 LCRVG 420
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + + A F L+ R + T + ++L +++ A+ ++ K G
Sbjct: 517 LIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLG 576
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L PS V Y + +DGL++ G+ + I + MK C P+ YT++IN + + A
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
KL + M+ PN TYT +V + G + A E + G E + Y++L++ +
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696
Query: 305 RL 306
L
Sbjct: 697 VL 698
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
T+ ++ A+C G + A A M + G+ V + IDG+ K G + A+ I + +
Sbjct: 478 TFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETL 537
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+ + + +++++ K K L + ++ P++ TYT LV+ R G
Sbjct: 538 VKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDI 597
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDRASYNIM 324
+ I E ++ +G P+VY Y ++ EA +L+S M G P+ +Y +M
Sbjct: 598 TGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVM 657
Query: 325 VDAYGRAG 332
V Y G
Sbjct: 658 VKGYVNNG 665
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 140 FTYLELLDSR-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198
F L +++ R C P T+ L++ C G KA + + M GL P V YN IDG
Sbjct: 391 FELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450
Query: 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258
L + G+ A ++ M +P T+T +IN + K K+ +A M +
Sbjct: 451 LCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLD 510
Query: 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLIS 308
T T L++ + G +A I E L I ++ N ++ E ++
Sbjct: 511 EVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLG 570
Query: 309 RMH-MGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345
+++ +G P +Y +VD R+G G S+ ++EL
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDITG--SFRILEL 606
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%)
Query: 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213
E T L+ C G A + + K + + N +D L KG ++ + +
Sbjct: 511 EVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLG 570
Query: 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273
++ + PS TYT +++ ++ + ++ M+ C PN+ YT ++N + G
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFG 630
Query: 274 LCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRA 319
EEAE++ +Q +G+ P+ Y +++ Y ++ E RA
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++I Q ++AE + DS P TY +++K Y +G L++A R M +
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G + +Y+S + G + QK ++ S E+ I L +
Sbjct: 681 GYELNDRIYSSLLQGFVLS---QKGID-----------NSEESTVSDIALRETDPECINE 726
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L E + C +C + LV +EG +E+ ++ + + G+ + A + +ME+
Sbjct: 727 LISVVE-QLGGCISGLCIF--LVTRLCKEGRTDESNDLVQNVLERGVFLE-KAMDIIMES 782
Query: 304 Y 304
Y
Sbjct: 783 Y 783
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 227 YTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
Y+ ++ K F+A + M + + Y +VNA + G E AE ++
Sbjct: 163 YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKIL 222
Query: 287 GAGIEPDVYAYNALM----------EAYRLISRM--HMGCEPDRASYNIMVDAYGRAG 332
G D + +L+ +A ++ M + C P+ SY+I++ G
Sbjct: 223 KIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVG 280
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 11/204 (5%)
Query: 149 RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208
R +P +Y+ ++ + +G ++A +F EMR G+ V YN+ + K G ++A
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463
Query: 209 VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268
++I + M + TY ++ YGK K K+F EM+ PN+ TY+ L++
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 269 FAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-HMGCEPD 317
+++ GL +EA EIF + + AG+ DV Y+AL++ A LI M G P+
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Query: 318 RASYNIMVDAYGRAGLHEGKCSYS 341
+YN ++DA+GR+ + YS
Sbjct: 584 VVTYNSIIDAFGRSATMDRSADYS 607
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 12/191 (6%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV-EIFQRM 215
++ L+ AY SGL E+A +VF M++YGL P+ V YN+ ID KGG K V + F M
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+R+ QP T+ ++ + + A LF+EM + + + ++ +Y L++A + G
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIM 324
+ A EI Q+ I P+V +Y+ ++ EA L M ++G DR SYN +
Sbjct: 391 DLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTL 450
Query: 325 VDAYGRAGLHE 335
+ Y + G E
Sbjct: 451 LSIYTKVGRSE 461
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+I+A G+ + K + + + + P T+ LL GL E A +F EM
Sbjct: 309 VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR 368
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
+ YN+ +D + KGG A EI +M P+ +Y+ +I+ + KA + A
Sbjct: 369 RIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEA 428
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L LF EMR + +Y L++ + + G EEA +I ++ GI+ DV YNAL+
Sbjct: 429 LNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGG 488
Query: 304 Y----------RLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
Y ++ + M P+ +Y+ ++D Y + GL++
Sbjct: 489 YGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYK 531
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLE--KAEAVFREMRK 182
LI AYG+ LH++A + + + P TY ++ A C G +E + F EM++
Sbjct: 274 LISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDA-CGKGGMEFKQVAKFFDEMQR 332
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
G+ P + +NS + +GG + A +F M + +Y +++ K + +
Sbjct: 333 NGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDL 392
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
A ++ +M + PN+ +Y+ +++ FA+ G +EA +F +++ GI D +YN L+
Sbjct: 393 AFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLS 452
Query: 303 AYRLISRMH-----------MGCEPDRASYNIMVDAYGRAGLHE 335
Y + R +G + D +YN ++ YG+ G ++
Sbjct: 453 IYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 168 GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY 227
G + A+ +F G + +++ I + G ++A+ +F MK +P+ TY
Sbjct: 247 GKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTY 306
Query: 228 TLMINLYGKASKSFMAL-KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
+I+ GK F + K F+EM+ + +P+ T+ +L+ +R GL E A +F+++
Sbjct: 307 NAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT 366
Query: 287 GAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRASYNIMVDAYGRAG 332
IE DV++YN L++A +M + E P+ SY+ ++D + +AG
Sbjct: 367 NRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAG 423
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L+ YG++ + + + + E+ +P TY+ L+ Y GL ++A +FRE + G
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK----- 239
L V+Y++ ID L K G AV + M ++ P+ TY +I+ +G+++
Sbjct: 545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSA 604
Query: 240 ----------SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE-------EIF 282
S AL E ++ T N + CEE E+F
Sbjct: 605 DYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKD-CEEGMQELSCILEVF 663
Query: 283 EQLQGAGIEPDVYAYNALMEA 303
++ I+P+V ++A++ A
Sbjct: 664 RKMHQLEIKPNVVTFSAILNA 684
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ Y + L+K+A + E + Y+ L+ A C +GL+ A ++ EM K G
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQR----MKRDCCQPSTETY-TLMINLYGKASK 239
+ P+ V YNS ID + ++ + TET +I L+G+ +
Sbjct: 580 ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTT 639
Query: 240 SFM----------------ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283
L++F +M + KPN+ T++A++NA +R E+A + E
Sbjct: 640 ESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLE 699
Query: 284 QLQ 286
+L+
Sbjct: 700 ELR 702
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
MI+ G+ K +A ++F + + ++AL++A+ R GL EEA +F ++ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 290 IEPDVYAYNALMEA-------YRLISRM-----HMGCEPDRASYNIMVDAYGRAGLHEG 336
+ P++ YNA+++A ++ +++ G +PDR ++N ++ R GL E
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR-----------LISRMH 311
+A+++ R G A+ IFE G VYA++AL+ AY S
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 312 MGCEPDRASYNIMVDAYGRAGL 333
G P+ +YN ++DA G+ G+
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGM 318
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 27/225 (12%)
Query: 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS 194
++KA E++ IP TY+ +L C + +E A +F EM++ GL Y
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523
Query: 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK 254
+D K G ++A + F M+ C P+ TYT +I+ Y KA K A +LF M S
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583
Query: 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD----------------VYAYN 298
C PNI TY+AL++ + G E+A +IFE++ G+ PD V Y
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYG 643
Query: 299 ALM----------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG 332
AL+ EA +L+ M M GCEP++ Y+ ++D + G
Sbjct: 644 ALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 107/213 (50%), Gaps = 14/213 (6%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY LL +C S +E+A + M G P+ +VY++ IDGL K G +A E+
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M + TY+ +I+ Y K + +A K+ ++M + C PN+ YT +++ +
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM-----------GCEPDRAS 320
G +EA ++ + ++ G +P+V Y A+++ + +I ++ G P+ +
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 321 YNIMVDAYGRAGLHEGKCSYSLV-ELSVKHYPA 352
Y +++D + G + +++L+ E+ H+P
Sbjct: 817 YRVLIDHCCKNGALD--VAHNLLEEMKQTHWPT 847
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%)
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
AE Y E+L + + + + + C +G EKA +V REM G P Y+ ++
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
L + A +F+ MKR TYT+M++ + KA A K FNEMR C P
Sbjct: 492 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551
Query: 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE 315
N+ TYTAL++A+ + A E+FE + G P++ Y+AL++ + ++ C+
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQ 609
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P + Y L+ C G L++A+ V EM ++G P + Y+S ID K A
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
++ +M + C P+ YT MI+ K K+ A KL M C+PN+ TYTA+++ F
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
G E E+ E++ G+ P+ Y L++
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 27/236 (11%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++++++ + L ++A + E+ + C P TY L+ AY + + A +F M
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM----------------KRDCCQPSTETY 227
G P+ V Y++ IDG K G +KA +IF+RM + +P+ TY
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642
Query: 228 TLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287
+++ + K+ + A KL + M C+PN Y AL++ + G +EA+E+ ++
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 288 AGIEPDVYAYNALMEAYRLISRMHMG-----------CEPDRASYNIMVDAYGRAG 332
G +Y Y++L++ Y + R + C P+ Y M+D + G
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS------GLLEKAEAVFR 178
L+ AY H A +++ +P Y +L+ + C LL+ AE +
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437
Query: 179 EMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238
EM G+ + + +S+ L G +KA + + M P T TY+ ++N AS
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497
Query: 239 KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYN 298
K +A LF EM+ ++ TYT +V++F + GL E+A + F +++ G P+V Y
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557
Query: 299 ALMEAY-----------RLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKC 338
AL+ AY + + GC P+ +Y+ ++D + +AG E C
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
L D R P+ TY L++A+ + L+ A + REM L + L K G
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGK 285
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
++A+ + ++ + P T YT +I+ +AS A+ N MR+ C PN+ TY+
Sbjct: 286 WREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYST 342
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-HMG 313
L+ + + + + G P +N+L+ AY+L+ +M G
Sbjct: 343 LLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG 402
Query: 314 CEPDRASYNIMV 325
P YNI++
Sbjct: 403 HMPGYVVYNILI 414
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 2/189 (1%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ Y + A ++L++ C P Y ++ C G ++A + + M + G
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V Y + IDG G + +E+ +RM P+ TY ++I+ K +A
Sbjct: 775 CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAH 834
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
L EM+ + Y ++ F +E + E+ + +++ P + Y L++
Sbjct: 835 NLLEEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNL 892
Query: 305 RLISRMHMG 313
R+ M
Sbjct: 893 IKAQRLEMA 901
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 52/237 (21%)
Query: 151 IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210
+P Y L+ C + L E+A MR P+ V Y++ + G L +
Sbjct: 299 VPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKR 358
Query: 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTAL----- 265
+ M + C PS + + +++ Y + A KL +M P Y L
Sbjct: 359 VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSIC 418
Query: 266 --------------------------------VNAFAR----EGLCEEAEEIFEQLQGAG 289
V++F R G E+A + ++ G G
Sbjct: 419 GDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQG 478
Query: 290 IEPDVYAYNALMEAYRLISRMHM-----------GCEPDRASYNIMVDAYGRAGLHE 335
PD Y+ ++ S+M + G D +Y IMVD++ +AGL E
Sbjct: 479 FIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+++ C++ +E A +F EM K G+ P + S I GL + +A+ + +
Sbjct: 921 TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980
Query: 216 KRDCC 220
C
Sbjct: 981 SHMVC 985
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 39/177 (22%)
Query: 141 TYLELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP---------- 186
T LELL+ P TY +L+ C +G L+ A + EM++ P
Sbjct: 797 TCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVI 856
Query: 187 -----------------------PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ-- 221
P VY ID L+K + A+ + + +
Sbjct: 857 EGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLV 916
Query: 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278
+ TY +I A+K A +LF+EM P + ++ +L+ R EA
Sbjct: 917 DYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 91 PTHATWDDLINVSVQLRLNKK----WDPIVLMSCVS-----ILLIEAYGQKSLHKKAEFT 141
PT T++ LIN V+ R +K D + L + +++ Y KA F
Sbjct: 622 PTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA-FE 680
Query: 142 YLELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200
Y L + + + TY LLKA C SG ++ A AV +EM +P ++ VYN IDG
Sbjct: 681 YFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWA 740
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260
+ G+ +A ++ Q+MK++ +P TYT I+ KA A + EM + KPNI
Sbjct: 741 RRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIK 800
Query: 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR 309
TYT L+ +AR L E+A +E+++ GI+PD Y+ L+ + L+SR
Sbjct: 801 TYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTS--LLSR 847
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y ++ A+C + +E+AEA+ REM + G+ +Y++ +DG + +K + +F+R+K
Sbjct: 417 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLK 476
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ TY +INLY K K AL++ M+ K N+ TY+ ++N F +
Sbjct: 477 ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWA 536
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAY 304
A +FE + G++PDV YN ++ A+
Sbjct: 537 NAFAVFEDMVKEGMKPDVILYNNIISAF 564
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 80/149 (53%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY++++ + A AVF +M K G+ P ++YN+ I GN +A++ + M
Sbjct: 521 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ +P+T T+ +I+ Y K+ +L++F+ MR C P + T+ L+N +
Sbjct: 581 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 640
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
E+A EI +++ AG+ + + Y +M+ Y
Sbjct: 641 EKAVEILDEMTLAGVSANEHTYTKIMQGY 669
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 141 TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200
T E+ R PT T+ ++ Y SG + ++ VF MR+ G P+ +N I+GL+
Sbjct: 576 TVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY------GKASKSFM------------ 242
+ +KAVEI M + TYT ++ Y GKA + F
Sbjct: 636 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 695
Query: 243 -----------------ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285
AL + EM + N Y L++ +AR G EA ++ +Q+
Sbjct: 696 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755
Query: 286 QGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDRASYNIMVDAYGRAGLH 334
+ G++PD++ Y + + A + I M +G +P+ +Y ++ + RA L
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 815
Query: 335 EGKCS 339
E S
Sbjct: 816 EKALS 820
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 13/211 (6%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P+ + L++K Y G + +A F MR G+ P++ +Y S I G + +A+
Sbjct: 307 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 366
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
++MK + + S TY++++ + KA + A F+E + N Y ++ A +
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGC-----------EPDRAS 320
E AE + +++ GI+ + Y+ +M+ Y +++ G P +
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486
Query: 321 YNIMVDAYGRAGLHEGKCSYSLV--ELSVKH 349
Y +++ Y + G S V E VKH
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKH 517
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I A+ Q ++AE E+ + Y ++ Y M +K VF+ +++ G
Sbjct: 420 IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECG 479
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V Y I+ K G KA+E+ + MK + + + +TY++MIN + K A
Sbjct: 480 FTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAF 539
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+F +M KP++ Y +++AF G + A + +++Q P + ++ Y
Sbjct: 540 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 599
Query: 305 -------RLISRMHM----GCEPDRASYNIMVDA 327
R + M GC P ++N +++
Sbjct: 600 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLING 633
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 11/216 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
L+++ YG++ +A T+ + PT Y L+ AY + +++A + R+M++
Sbjct: 314 LMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEE 373
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+ S V Y+ + G K G+ + A F KR + Y +I + + A
Sbjct: 374 GIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERA 433
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L EM I Y +++ + ++ +F++L+ G P V Y L+
Sbjct: 434 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINL 493
Query: 304 YRLISRMHMGCEPDRA-----------SYNIMVDAY 328
Y + ++ E R +Y++M++ +
Sbjct: 494 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGF 529
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
G N Q + F+++ + PS + LM+ YG+ A + F MR+ P
Sbjct: 291 GDNWQAVISAFEKISK----PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
YT+L++A+A +EA +++ GIE + Y+ ++ +
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGF 389
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ C P TY L+ +Y + L +A VF +M++ G P V Y + ID K G
Sbjct: 389 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A++++QRM+ P T TY+++IN GKA A KLF EM C PN+ TY
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM- 312
+++ A+ + A +++ +Q AG EPD Y+ +M EA + + M
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 313 GCEPDRASYNIMVDAYGRAG 332
PD Y ++VD +G+AG
Sbjct: 569 NWIPDEPVYGLLVDLWGKAG 588
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 11/217 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI +YG+ + +A + ++ ++ C P TY L+ + +G L+ A +++ M+ G
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P Y+ I+ L K G+ A ++F M C P+ TY +M++L+ KA AL
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 524
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
KL+ +M++ +P+ TY+ ++ G EEAE +F ++Q PD Y L++
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584
Query: 303 --------AYRLISRM-HMGCEPDRASYNIMVDAYGR 330
A++ M H G P+ + N ++ + R
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLR 621
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 27/196 (13%)
Query: 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240
R+ G Y + + L + ++ M RD CQP+T TY +I+ YG+A+
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415
Query: 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
A+ +FN+M+ CKP+ TY L++ A+ G + A ++++++Q G+ PD + Y+ +
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475
Query: 301 ME----------AYRLISRM-HMGCEPDRASYNIMVDAYGR----------------AGL 333
+ A++L M GC P+ +YNIM+D + + AG
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535
Query: 334 HEGKCSYSLVELSVKH 349
K +YS+V + H
Sbjct: 536 EPDKVTYSIVMEVLGH 551
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 134 LHKKAEF------TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP 187
+H KA F Y + P TY++++ +G L A +F EM G P
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTP 502
Query: 188 SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLF 247
+ V YN +D K N Q A+++++ M+ +P TY++++ + G A +F
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVF 562
Query: 248 NEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM------ 301
EM+ P+ Y LV+ + + G E+A + ++ + AG+ P+V N+L+
Sbjct: 563 TEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRV 622
Query: 302 ----EAYRLISRM-HMGCEPDRASYNIMVD--AYGRAGLHEGKC 338
EAY L+ M +G P +Y +++ GR+ L G C
Sbjct: 623 NKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFC 666
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 84/178 (47%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++I G+ A + E++D C P TY +++ + + + A ++R+M+
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G P V Y+ ++ L G ++A +F M++ P Y L+++L+GKA A
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
+ + M +PN+ T +L++ F R EA E+ + + G+ P + Y L+
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 651
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 77/144 (53%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++++ + + ++ A Y ++ ++ P + TY+++++ G LE+AEAVF EM++
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
P VY +D K GN +KA + +Q M +P+ T +++ + + +K A
Sbjct: 569 NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628
Query: 244 LKLFNEMRSHKCKPNICTYTALVN 267
+L M + +P++ TYT L++
Sbjct: 629 YELLQNMLALGLRPSLQTYTLLLS 652
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
+LL C PT TY +L++A + G +++A + EM GL P YN+ I G+ K G
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
+A E+ + ++ C+P +Y +++ K KL +M S KC PN+ TY+
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM----------- 312
L+ R+G EEA + + ++ G+ PD Y+Y+ L+ A+ R+ +
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Query: 313 GCEPDRASYNIMVDAYGRAG 332
GC PD +YN ++ + G
Sbjct: 398 GCLPDIVNYNTVLATLCKNG 417
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
Query: 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219
L+K + + KA V + K+G P YN+ I+G K A + RM+
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188
Query: 220 CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279
P T TY +MI K +ALK+ N++ S C+P + TYT L+ A EG +EA
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248
Query: 280 EIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASYNIMVDAY 328
++ +++ G++PD++ YN ++ A+ ++ + + GCEPD SYNI++
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL--- 305
Query: 329 GRAGLHEGK 337
RA L++GK
Sbjct: 306 -RALLNQGK 313
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 11/201 (5%)
Query: 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202
+E+L+ P Y L+ +C ++ A V MR P V YN I L
Sbjct: 147 MEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSR 206
Query: 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262
G A+++ ++ D CQP+ TYT++I ALKL +EM S KP++ TY
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM 312
++ +EG+ + A E+ L+ G EPDV +YN L+ E +L+++M
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326
Query: 313 -GCEPDRASYNIMVDAYGRAG 332
C+P+ +Y+I++ R G
Sbjct: 327 EKCDPNVVTYSILITTLCRDG 347
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 13/220 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+L+ A + ++ E ++ +C P TY++L+ C G +E+A + + M++
Sbjct: 303 ILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
GL P A Y+ I + G A+E + M D C P Y ++ K K+ A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM-- 301
L++F ++ C PN +Y + +A G A + ++ GI+PD YN+++
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482
Query: 302 --------EAYRLISRMHMGCE--PDRASYNIMVDAYGRA 331
EA+ L+ M CE P +YNI++ + +A
Sbjct: 483 LCREGMVDEAFELLVDMR-SCEFHPSVVTYNIVLLGFCKA 521
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P +Y +LL+A G E+ E + +M P+ V Y+ I L + G ++A+
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+ + MK P +Y +I + + + +A++ M S C P+I Y ++
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-----------YRLISRMHMGCEPDR 318
+ G ++A EIF +L G P+ +YN + A + ++ M G +PD
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 319 ASYNIMVDAYGRAGL 333
+YN M+ R G+
Sbjct: 474 ITYNSMISCLCREGM 488
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Query: 142 YLE-LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200
+LE ++ C+P Y +L C +G ++A +F ++ + G P++ YN+ L
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260
G+ +A+ + M + P TY MI+ + A +L +MRS + P++
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
TY ++ F + E+A + E + G G P+ Y L+E
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P +Y + A SG +A + EM G+ P + YNS I L + G +A
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
E+ M+ PS TY +++ + KA + A+ + M + C+PN TYT L+
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Query: 270 AREGLCEEAEEIFEQL 285
G EA E+ L
Sbjct: 554 GFAGYRAEAMELANDL 569
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196
+A LE++ + P E TY ++ C G++++A + +MR PS V YN +
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515
Query: 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250
G K + A+ + + M + C+P+ TYT++I G A A++L N++
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 11/219 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI + KA+ + ++ C P DTY L+K +C S +E +FREM G
Sbjct: 296 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L V Y + I GL G+ A ++F++M D P TY+++++ K AL
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--- 301
++F+ M+ + K +I YT ++ + G ++ ++F L G++P+V YN ++
Sbjct: 416 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Query: 302 -------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
EAY L+ +M G PD +YN ++ A+ R G
Sbjct: 476 CSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 100/196 (51%), Gaps = 17/196 (8%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P TY +++ C G ++ A + +M + V++N+ ID L K + A+
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205
Query: 210 EIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
+F+ M+ +P+ TY+ +I+ YG+ S A +L ++M K PN+ T+ AL+
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD---ASQLLSDMIEKKINPNLVTFNALI 262
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMG-----------CE 315
+AF +EG EAE++ + + I+PD++ YN+L+ + + R+ C
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322
Query: 316 PDRASYNIMVDAYGRA 331
PD +YN ++ + ++
Sbjct: 323 PDLDTYNTLIKGFCKS 338
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P+ T + LL YC + A A+ +M + G P + + + I GL +AV +
Sbjct: 78 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 137
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM + CQP+ TY +++N K +A L N+M + K + ++ + ++++ +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F++++ GI P+V Y++L+ +A +L+S M P+ +
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257
Query: 321 YNIMVDAYGRAG 332
+N ++DA+ + G
Sbjct: 258 FNALIDAFVKEG 269
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
++++ + P T+ L+ A+ G +AE + +M K + P YNS I+G
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
KA ++F+ M C P +TY +I + K+ + +LF EM + TYT
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 364
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L+ +G C+ A+++F+Q+ G+ PD+ Y+ L++
Sbjct: 365 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY +L+ +C + A A+ +M K G PS V +S ++G G AV + +M
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+P T T+T +I+ L+ KAS+ A+ L + M C+PN+ TY +VN +
Sbjct: 107 VEMGYRPDTITFTTLIHGLFLHNKASE---AVALVDRMVQRGCQPNLVTYGVVVNGLCKR 163
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASY 321
G + A + +++ A IE DV +N ++ +A L M G P+ +Y
Sbjct: 164 GDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 223
Query: 322 NIMVD---AYGR 330
+ ++ +YGR
Sbjct: 224 SSLISCLCSYGR 235
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 15/193 (7%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
+ ++ + C ++ A +F+EM G+ P+ V Y+S I L G A ++ M
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T+ +I+ + K K A KL ++M P+I TY +L+N F +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRASYNIMV 325
+A+++FE + PD+ YN L++ + L M H G D +Y ++
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 326 DAYGRAGLHEGKC 338
H+G C
Sbjct: 368 QGL----FHDGDC 376
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKL 246
PS +N + + K + + ++M+R + TY ++IN + + S+ +AL L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 247 FNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----- 301
+M +P+I T ++L+N + +A + +Q+ G PD + L+
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 302 -----EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
EA L+ RM GC+P+ +Y ++V+ + G
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 164
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
A+ + +++ P TY++LL C +G LEKA VF M+K + +Y + I+
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM--ALKLFNEMRSHKC 255
G+ K G ++F + +P+ TY MI+ G SK + A L +M+
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS--GLCSKRLLQEAYALLKKMKEDGP 496
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
P+ TY L+ A R+G + E+ +++
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREMR 527
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 86/194 (44%), Gaps = 11/194 (5%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
++ SR +P+ + LL A + ++ +M++ G+ + YN I+ +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
A+ + +M + +PS T + ++N Y + A+ L ++M +P+ T+T
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG- 313
L++ EA + +++ G +P++ Y ++ A+ L+++M
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 314 CEPDRASYNIMVDA 327
E D +N ++D+
Sbjct: 181 IEADVVIFNTIIDS 194
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +++ C +G ++ +F + G+ P+ V YN+ I GL Q+A + ++MK
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
D P + TY +I + + + +L EMRS
Sbjct: 493 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 11/207 (5%)
Query: 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196
+AE + E++ +P Y L+ +C G + A F EM + P + Y + I
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393
Query: 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK 256
G + G+ +A ++F M +P + T+T +IN Y KA A ++ N M C
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453
Query: 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRL 306
PN+ TYT L++ +EG + A E+ ++ G++P+++ YN+++ EA +L
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 307 ISRMH-MGCEPDRASYNIMVDAYGRAG 332
+ G D +Y ++DAY ++G
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSG 540
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 11/218 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI Y + K A + ++ + C P TY L+ C G L+ A + EM K G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P+ YNS ++GL K GN ++AV++ + T TYT +++ Y K+ + A
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
++ EM +P I T+ L+N F G+ E+ E++ + GI P+ +N+L++ Y
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Query: 305 RLISRMHM-----------GCEPDRASYNIMVDAYGRA 331
+ + + G PD +Y +V + +A
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 644
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 119 SCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFR 178
+ V LI+ + ++ + A + E+ P TY ++ +C G + +A +F
Sbjct: 351 TVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410
Query: 179 EMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238
EM GL P +V + I+G K G+ + A + M + C P+ TYT +I+ K
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 239 KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYN 298
A +L +EM +PNI TY ++VN + G EEA ++ + + AG+ D Y
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530
Query: 299 ALMEAY-----------RLISRMHMGCEPDRASYNIMVDAYGRAGLHE 335
LM+AY L + G +P ++N++++ + G+ E
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLE 578
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +Y+ ++ YC G L+K + M++ GL P++ +Y S I L + +A E
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F M R P T YT +I+ + K A K F EM S P++ TYTA+++ F +
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
G EA ++F ++ G+EPD + L+ +A+R+ + M GC P+ +
Sbjct: 399 IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVT 458
Query: 321 YNIMVDAYGRAG 332
Y ++D + G
Sbjct: 459 YTTLIDGLCKEG 470
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ L+ YC +G ++ A V M + G P+ V Y + IDGL K G+ A E+
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M + QP+ TY ++N K+ A+KL E + + TYT L++A+ +
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRAS 320
G ++A+EI +++ G G++P + +N LM + +L++ M G P+ +
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 321 YNIMVDAY 328
+N +V Y
Sbjct: 599 FNSLVKQY 606
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 11/188 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
+Y +++ C G +++A + M G P + Y++ ++G + G K ++ + M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
KR +P++ Y +I L + K A + F+EM P+ YT L++ F + G
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDRASYNIM 324
A + F ++ I PDV Y A++ EA +L M G EPD ++ +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 325 VDAYGRAG 332
++ Y +AG
Sbjct: 428 INGYCKAG 435
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++AY + KA+ E+L PT T+ +L+ +C+ G+LE E + M G
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P+A +NS + N + A I++ M P +TY ++ + KA A
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293
LF EM+ ++ TY+ L+ F + EA E+F+Q++ G+ D
Sbjct: 652 FLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ AYC SG ++KA+ + +EM GL P+ V +N ++G G + ++ M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
P+ T+ ++ Y + A ++ +M S P+ TY LV +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+EA +F++++G G V Y+ L++ +
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 12/177 (6%)
Query: 168 GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG-NPQKAVEIFQRMKRDCCQPSTET 226
GLL +A VF +M YGL S N Y+ L K A+ +F+ + +
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248
Query: 227 YTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
Y ++I+ + + A L M P++ +Y+ +VN + R G ++ ++ E ++
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 287 GAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
G++P+ Y Y +++ EA S M G PD Y ++D + + G
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 11/171 (6%)
Query: 173 AEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232
A VFRE + G+ + YN I + + G ++A + M+ P +Y+ ++N
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 233 LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292
Y + + KL M+ KPN Y +++ R EAEE F ++ GI P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 293 DVYAYNALMEAY----------RLISRMH-MGCEPDRASYNIMVDAYGRAG 332
D Y L++ + + MH PD +Y ++ + + G
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ + + K+A F + E+ + TY++L+K + +A VF +MR+ G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVE 210
L +++ + D KG P V+
Sbjct: 697 LAADKEIFDFFSDTKYKGKRPDTIVD 722
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%)
Query: 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202
+EL + P Y L+ C G +EKA+ +F EM K GL + Y I+GL K
Sbjct: 187 IELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKN 246
Query: 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262
G ++ E++++M+ D P+ TY ++N K ++ A ++F+EMR NI TY
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM-----------H 311
L+ RE EA ++ +Q++ GI P++ YN L++ + + ++
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 312 MGCEPDRASYNIMVDAYGRAGLHEG 336
G P +YNI+V + R G G
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSG 391
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ C L +A V +M+ G+ P+ + YN+ IDG G KA+ + + +
Sbjct: 305 TYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
K PS TY ++++ + + + A K+ EM KP+ TYT L++ FAR
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIM 324
E+A ++ ++ G+ PDV+ Y+ L+ EA RL M CEP+ YN M
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 325 VDAYGRAG 332
+ Y + G
Sbjct: 485 ILGYCKEG 492
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 119 SCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFR 178
+C + LL G S ++ +++ S+ + ++ +L+K C +G +EK+ +
Sbjct: 130 NCFNYLLTFVVGSSSFNQ--WWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLI 187
Query: 179 EMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238
E+ ++G P+ V+Y + IDG K G +KA ++F M + + TYT++IN K
Sbjct: 188 ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNG 247
Query: 239 KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYN 298
+++ +M+ PN+ TY ++N ++G ++A ++F++++ G+ ++ YN
Sbjct: 248 VKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYN 307
Query: 299 ALM----------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG 332
L+ EA +++ +M G P+ +YN ++D + G
Sbjct: 308 TLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY L+ +C G L KA ++ R+++ GL PS V YN + G + G+ A ++
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ M+ +PS TYT++I+ + ++ A++L M P++ TY+ L++ F
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRAS 320
+G EA +F+ + EP+ YN ++ Y +L+ M P+ AS
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVAS 515
Query: 321 YNIMVDA 327
Y M++
Sbjct: 516 YRYMIEV 522
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI + + K+ Y ++ + P TY ++ C G + A VF EMR+
Sbjct: 238 VLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER 297
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+ + V YN+ I GL + +A ++ +MK D P+ TY +I+ + K A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
L L +++S P++ TY LV+ F R+G A ++ ++++ GI+P Y L++
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 304 YRLISRM-----------HMGCEPDRASYNIMVDAY 328
+ M +G PD +Y++++ +
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF 453
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P++ TY +L+ + S +EKA + M + GL P Y+ I G G +A +
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F+ M C+P+ Y MI Y K S+ ALKL EM + PN+ +Y ++ +
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525
Query: 272 EGLCEEAEEIFEQLQGAGIEP 292
E +EAE + E++ +GI+P
Sbjct: 526 ERKSKEAERLVEKMIDSGIDP 546
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE Y E++ P TY+ L+ +CM L++A+ +F M
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V YN+ I G K ++ +E+F+ M + +T TY +I +A MA
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
K+F +M S P+I TY+ L++ + G E+A +FE LQ + +EPD+Y YN ++E
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G +P+ Y M+ + R GL E
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 134 LHKKAE--FTYLELLDSR-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190
LH KA ++ + +R C P TY ++ C G ++ A ++ ++M K + V
Sbjct: 197 LHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 256
Query: 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLF 247
+Y + ID L N A+ +F M +P+ TY +I YG+ S A +L
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD---ASRLL 313
Query: 248 NEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--- 304
++M K PN+ T++AL++AF +EG EAE++++++ I+PD++ Y++L+ +
Sbjct: 314 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373
Query: 305 -RLISRMHM-------GCEPDRASYNIMVDAYGRA 331
RL HM C P+ +YN ++ + +A
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 408
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 70/337 (20%)
Query: 63 SPTAQQILRFVQREVDSNTI-----WDAF---DSLPPTHATWDDLINVSVQLRLNKKWDP 114
S ++ + ++R+++ N + DAF L +D++I S+ DP
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--------DP 358
Query: 115 IVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAE 174
+ LI + +A+ + ++ C P TY L+K +C + +E+
Sbjct: 359 DIFTYSS---LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 175 AVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN-- 232
+FREM + GL + V YN+ I GL + G+ A +IF++M D P TY+++++
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Query: 233 -LYGKASKSFMALK--------------------------------LFNEMRSHKCKPNI 259
YGK K+ + + LF + KPN+
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA----------YRLISR 309
YT +++ F R+GL EEA+ +F +++ G P+ YN L+ A LI
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595
Query: 310 MHM-GCEPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345
M G D ++ +++++ LH+G+ S +E+
Sbjct: 596 MRSCGFVGDASTISMVINM-----LHDGRLEKSYLEM 627
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T + LL YC + +A A+ +M P+ V +N+ I GL +AV +
Sbjct: 148 PDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM CQP TY ++N K +AL L +M K + ++ YT +++A
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 267
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
+A +F ++ GI P+V YN+L+ +A RL+S M P+ +
Sbjct: 268 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327
Query: 321 YNIMVDAYGRAG 332
++ ++DA+ + G
Sbjct: 328 FSALIDAFVKEG 339
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 146 LDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
+D++ I P TY L++ C G A + +M + + P+ V +++ ID +K G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
+A +++ M + P TY+ +IN + + A +F M S C PN+ TY
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-HMG 313
L+ F + EE E+F ++ G+ + YN L++ A ++ +M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 314 CEPDRASYNIMVDAYGRAG 332
PD +Y+I++D + G
Sbjct: 461 VPPDIITYSILLDGLCKYG 479
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y ++ A C + A +F EM G+ P+ V YNS I L G A + M
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T++ +I+ + K K A KL++EM P+I TY++L+N F +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDR-----------ASYNIMV 325
EA+ +FE + P+V YN L++ + R+ G E R +YN ++
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 326 DAYGRAG 332
+AG
Sbjct: 438 QGLFQAG 444
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
+Y +L+ +C L A AV +M K G P V +S ++G G +AV + +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
QP+T T+ +I+ L+ KAS+ A+ L + M + C+P++ TY +VN +
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASE---AVALIDRMVARGCQPDLFTYGTVVNGLCKR 233
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASY 321
G + A + ++++ IE DV Y ++ +A L + M + G P+ +Y
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 322 NIMVDA---YGR 330
N ++ YGR
Sbjct: 294 NSLIRCLCNYGR 305
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229
L+ A +F EM + PS V +N + + K + + +RM+ +Y +
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
+IN + + S+ +AL + +M +P+I T ++L+N + EA + +Q+
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 290 IEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+P+ +N L+ EA LI RM GC+PD +Y +V+ + G
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ SR +P+ + LL A + ++ M+ + YN I+ +
Sbjct: 70 EMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRS 129
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A+ + +M + +P T + ++N Y + A+ L ++M + +PN T+
Sbjct: 130 QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFN 189
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG 313
L++ EA + +++ G +PD++ Y ++ A L+ +M G
Sbjct: 190 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG 249
Query: 314 -CEPDRASYNIMVDA 327
E D Y ++DA
Sbjct: 250 KIEADVVIYTTIIDA 264
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 97 DDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDT 156
DD +N+ ++ NK P V+ I + YG+ S A ++++ + P T
Sbjct: 270 DDALNLFTEME-NKGVRPNVITYSSLISCLCNYGRWS---DASRLLSDMIERKINPNLVT 325
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
++ L+ A+ G L KAE ++ EM K + P+ Y+S I+G +A ++ + M
Sbjct: 326 FSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMI 385
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
R C P+ TY +IN + KA + ++LF EM N TYT L++ F + C+
Sbjct: 386 RKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 445
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRLISRMHMGCEPDRASYNI 323
A+ +F+Q+ G+ P++ YN L++ + + R M EPD +YNI
Sbjct: 446 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM--EPDIYTYNI 503
Query: 324 MVDAYGRAG 332
M++ +AG
Sbjct: 504 MIEGMCKAG 512
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ +K KAE Y E++ P TY+ L+ +CM L +A+ + M +
Sbjct: 329 LIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKD 388
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V YN+ I+G K K +E+F+ M + +T TYT +I+ + +A A
Sbjct: 389 CLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 448
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+F +M S PNI TY L++ + G +A +FE LQ + +EPD+Y YN ++E
Sbjct: 449 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 508
Query: 305 RLISRMHMG 313
+ MG
Sbjct: 509 CKAGKWKMG 517
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 134 LHKKAEFTYLELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA 189
LH KA + L+D C P TY ++ C G + A + +M + +
Sbjct: 195 LHNKAS-EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANV 253
Query: 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKL 246
V+Y++ ID L K + A+ +F M+ +P+ TY+ +I+ YG+ S A +L
Sbjct: 254 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSD---ASRL 310
Query: 247 FNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRL 306
++M K PN+ T++AL++AF ++G +AE+++E++ I+P+++ Y++L+ + +
Sbjct: 311 LSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCM 370
Query: 307 ISRM-----------HMGCEPDRASYNIMVDAYGRA 331
+ R+ C P+ +YN +++ + +A
Sbjct: 371 LDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKA 406
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T LL +C + A A+ +M + G P V + + I GL +AV +
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVAL 205
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM + CQP TY ++N K + +AL L N+M + K + N+ Y+ ++++ +
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F +++ G+ P+V Y++L+ +A RL+S M P+ +
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVT 325
Query: 321 YNIMVDAYGRAG 332
++ ++DA+ + G
Sbjct: 326 FSALIDAFVKKG 337
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY +L+ +C L A A+ +M K G P V NS ++G G AV + +M
Sbjct: 115 TYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQM 174
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+P T T+T +I+ L+ KAS+ A+ L + M C+P++ TY A+VN +
Sbjct: 175 VEMGYKPDTVTFTTLIHGLFLHNKASE---AVALIDRMVQRGCQPDLVTYGAVVNGLCKR 231
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASY 321
G + A + +++ A IE +V Y+ ++ +A L + M + G P+ +Y
Sbjct: 232 GDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 291
Query: 322 NIMVDA---YGR 330
+ ++ YGR
Sbjct: 292 SSLISCLCNYGR 303
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y+ ++ + C + A +F EM G+ P+ + Y+S I L G A + M
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T++ +I+ + K K A KL+ EM PNI TY++L+N F
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDR 318
EA+++ E + P+V YN L+ + R+ G E R
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229
L+ A +F M + PS + ++ + + K + ++M+ + TY +
Sbjct: 59 LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNI 118
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
+IN + + S+ +AL L +M +P+I T +L+N F +A + +Q+ G
Sbjct: 119 LINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMG 178
Query: 290 IEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+PD + L+ EA LI RM GC+PD +Y +V+ + G
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRG 232
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
SR P+ ++ LL A + + +M G+ + YN I+ +
Sbjct: 72 SRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSL 131
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
A+ + +M + +P T ++N + ++ A+ L ++M KP+ T+T L++
Sbjct: 132 ALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIH 191
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG-CEP 316
EA + +++ G +PD+ Y A++ A L+++M E
Sbjct: 192 GLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEA 251
Query: 317 DRASYNIMVDA 327
+ Y+ ++D+
Sbjct: 252 NVVIYSTVIDS 262
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG--NPQKAVEIFQ 213
Y ++ Y SG KA+ + MR+ G P + +N+ I+ LK G P AVE+
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLD 286
Query: 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273
++ +P TY +++ + S A+K+F +M +H+C+P++ TY A+++ + R G
Sbjct: 287 MVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCG 346
Query: 274 LCEEAEEIFEQLQGAGIEPDVYAYNALM-------------EAYRLISRMHMGCEPDRAS 320
L EAE +F +L+ G PD YN+L+ E Y+ + +M G D +
Sbjct: 347 LAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG--KDEMT 404
Query: 321 YNIMVDAYGRAG 332
YN ++ YG+ G
Sbjct: 405 YNTIIHMYGKQG 416
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 18/206 (8%)
Query: 144 ELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAV--FREMRKYGLPPSAVVYNSYID 197
EL+D+ C+P ++ L+ A SG L AV +R GL P A+ YN+ +
Sbjct: 246 ELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLS 305
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
+ N AV++F+ M+ CQP TY MI++YG+ + A +LF E+ P
Sbjct: 306 ACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFP 365
Query: 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM----- 312
+ TY +L+ AFARE E+ +E+++Q+Q G D YN ++ Y ++ +
Sbjct: 366 DAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLY 425
Query: 313 -------GCEPDRASYNIMVDAYGRA 331
G PD +Y +++D+ G+A
Sbjct: 426 KDMKGLSGRNPDAITYTVLIDSLGKA 451
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 149 RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208
RC P TY ++ Y GL +AE +F E+ G P AV YNS + + N +K
Sbjct: 327 RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKV 386
Query: 209 VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK-PNICTYTALVN 267
E++Q+M++ TY +I++YGK + +AL+L+ +M+ + P+ TYT L++
Sbjct: 387 KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLID 446
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR-----------MHMGCEP 316
+ + EA + ++ GI+P + Y+AL+ Y + + G +P
Sbjct: 447 SLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKP 506
Query: 317 DRASYNIMVDAYGRAGLHEGKCSYSLVE--LSVKHYPA 352
D +Y++M+D R +E + ++ L +S H P+
Sbjct: 507 DNLAYSVMLDVLLRG--NETRKAWGLYRDMISDGHTPS 542
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I YG+ L +AE ++EL P TY LL A+ EK + V+++M+K G
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYGKASKSFMA 243
+ YN+ I K G A+++++ MK + P TYT++I+ GKA+++ A
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
L +EM KP + TY+AL+ +A+ G EEAE+ F + +G +PD AY+ +++
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLD 516
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 110/221 (49%), Gaps = 11/221 (4%)
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
+L+++A+ + + + Y + + +PT Y ++++ C + AE + EM +
Sbjct: 861 LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
++NS + + +K V+++QR+K +P TY +I +Y + +
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEE 980
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM- 301
L +MR+ P + TY +L++AF ++ E+AE++FE+L G++ D Y+ +M
Sbjct: 981 GYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMK 1040
Query: 302 ---------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+A +L+ M + G EP A+ ++++ +Y +G
Sbjct: 1041 ISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSG 1081
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 11/217 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+IEAYG++ L +KAE L S P T+ L+ AY G E+A A+F M + G
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ N + L G ++ + + ++ + S + LM++ + +A F
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K+++ M++ P I Y ++ + +AE + +++ A + ++ +N++++ Y
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMY 937
Query: 305 RLISRM-----------HMGCEPDRASYNIMVDAYGR 330
I G EPD +YN ++ Y R
Sbjct: 938 TAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 22/236 (9%)
Query: 132 KSLHKKAEFTYLELLDSRCIPTEDT-YALLLKAYCMSGLLEKAEAVFR--EMRKYGLPPS 188
K L K+ ++LD+R + T Y ++K+ ++A VF +R + P +
Sbjct: 133 KILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW-QRALEVFEWLNLRHWHSPNA 191
Query: 189 AVVYNSYIDGLLKGGNPQK-AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLF 247
+V + I G+L N + AVEIF R + + Y M+ +Y ++ K A +L
Sbjct: 192 RMV--AAILGVLGRWNQESLAVEIFTRAE-PTVGDRVQVYNAMMGVYSRSGKFSKAQELV 248
Query: 248 NEMRSHKCKPNICTYTALVNAFAREGLCEE--AEEIFEQLQGAGIEPDVYAYNALMEAYR 305
+ MR C P++ ++ L+NA + G A E+ + ++ +G+ PD YN L+ A
Sbjct: 249 DAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACS 308
Query: 306 LISRMHMG-----------CEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVKHY 350
S + C+PD +YN M+ YGR GL + +EL +K +
Sbjct: 309 RDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGL-AAEAERLFMELELKGF 363
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+++ Y +KK Y + ++ P E TY L+ YC E+ + ++MR G
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P Y S I K ++A ++F+ + + Y M+ + + A
Sbjct: 993 LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
KL M++ +P + T L+ +++ G +EAE++ L+ +E Y+++++AY
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112
Query: 305 -----------RLISRMHMGCEPDRASYNIMVDA 327
RL+ G EPD + V A
Sbjct: 1113 LRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRA 1146
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C + Y LL + +A VF ++R G S V S + K G P+ A
Sbjct: 677 CFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAH 736
Query: 210 EIFQRMKRD----CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTAL 265
++ + + C P YT +I YGK A + +R P++ T+ +L
Sbjct: 737 QVVNQAETKGFHFACSP---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSL 793
Query: 266 VNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH-----------MGC 314
++A+A+ G E A IF + G P V + N L+ A + R+ MG
Sbjct: 794 MSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGF 853
Query: 315 EPDRASYNIMVDAYGRAG-LHEGKCSYS 341
+ ++S +M+DA+ RAG + E K YS
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVKKIYS 881
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +++AY L +KAE+V +R+ G P +NS + + G ++A IF M
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 217 RDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273
RD P+ E+ ++++ + G+ + ++ ++ +M K +I +++AFAR G
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILL---MLDAFARAG 871
Query: 274 LCEEAEEIFEQLQGAGIEPDVYAYNALME 302
E ++I+ ++ AG P + Y ++E
Sbjct: 872 NIFEVKKIYSSMKAAGYLPTIRLYRMMIE 900
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L+ AY Q +++A + ++ PT ++ +LL A C+ G LE+ V E++ G
Sbjct: 793 LMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMG 852
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA- 243
S +D + GN + +I+ MK P+ Y +MI L K + A
Sbjct: 853 FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 244 ---------------------LKLFNEMRSHK-------------CKPNICTYTALVNAF 269
LK++ + +K +P+ TY L+ +
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
R+ EE + +Q++ G++P + Y +L+ A+
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI++ G+ + +A E+LD PT TY+ L+ Y +G E+AE F M +
Sbjct: 443 VLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRS 502
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231
G P + Y+ +D LL+G +KA +++ M D PS Y LMI
Sbjct: 503 GTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMI 550
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI Y + ++AE T+ +L S P Y+++L KA ++R+M G
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDG 538
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231
PS +Y I GL+K + + M+ C E ++++
Sbjct: 539 HTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLV 585
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Query: 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214
D+Y +L++ C +G +A + ++ + G+ ++YN+ L K ++F++
Sbjct: 408 DSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 467
Query: 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274
MK+D P TY ++I +G+ + A+ +F E+ CKP+I +Y +L+N + G
Sbjct: 468 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 527
Query: 275 CEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM-----------GCEPDRASYNI 323
+EA F+++Q G+ PDV Y+ LME + R+ M GC+P+ +YNI
Sbjct: 528 VDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNI 587
Query: 324 MVDAYGRAG 332
++D + G
Sbjct: 588 LLDCLEKNG 596
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 152 PTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
P+ D TY +L+ ++ G +++A +F E+ + P + YNS I+ L K G+ +A
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAH 532
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
F+ M+ P TY+ ++ +GK + MA LF EM C+PNI TY L++
Sbjct: 533 VRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
+ G EA +++ +++ G+ PD Y L
Sbjct: 593 EKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY LL+AY S KA V+ E+R+ G YN +D L K +KA ++F+ M
Sbjct: 205 TYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDM 261
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
K+ C+ TYT+MI G+ K A+ LFNEM + N+ Y L+ A+ +
Sbjct: 262 KKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMV 321
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM 301
++A ++F ++ G P+ Y Y+ L+
Sbjct: 322 DKAIQVFSRMVETGCRPNEYTYSLLL 347
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 124/302 (41%), Gaps = 76/302 (25%)
Query: 106 LRLNKKWDPIVLMSCVSILLIEAY---------------GQKSLHKKAEFTYLELLDS-- 148
LRL KKWD + + S L++AY ++ HK F Y LLD+
Sbjct: 191 LRLVKKWD-LKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALA 249
Query: 149 ---------------RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN 193
C E TY ++++ G ++A +F EM GL + V YN
Sbjct: 250 KDEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYN 309
Query: 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL------------YGKASKSF 241
+ + L KG KA+++F RM C+P+ TY+L++NL + SK +
Sbjct: 310 TLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRY 369
Query: 242 M--------------------ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEI 281
M A +LF +M S K +Y +++ + G EA E+
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429
Query: 282 FEQLQGAGIEPDVYAYNALMEA---YRLISRMH--------MGCEPDRASYNIMVDAYGR 330
++ G+ D YN + A + IS +H G PD +YNI++ ++GR
Sbjct: 430 LSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGR 489
Query: 331 AG 332
G
Sbjct: 490 VG 491
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212
T+ Y+ L++ G + +A +F +M + + Y S ++ L G +A+E+
Sbjct: 371 TQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEML 430
Query: 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
++ T Y + + GK + LF +M+ P+I TY L+ +F R
Sbjct: 431 SKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRV 490
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAY-RLISRMHMGCEPDRASY 321
G +EA IFE+L+ + +PD+ +YN+L+ EA+ R G PD +Y
Sbjct: 491 GEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTY 550
Query: 322 NIMVDAYGRAGLHEGKCSYSLVE 344
+ +++ +G+ + +YSL E
Sbjct: 551 STLMECFGKT--ERVEMAYSLFE 571
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 74/142 (52%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI ++G+ +A + EL S C P +Y L+ +G +++A F+EM++
Sbjct: 482 ILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEK 541
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
GL P V Y++ ++ K + A +F+ M CQP+ TY ++++ K ++ A
Sbjct: 542 GLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEA 601
Query: 244 LKLFNEMRSHKCKPNICTYTAL 265
+ L+++M+ P+ TYT L
Sbjct: 602 VDLYSKMKQQGLTPDSITYTVL 623
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262
GN + + +K+ + ++ TY ++ Y ++ A ++ E+R K +I Y
Sbjct: 182 GNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAY 241
Query: 263 TALVNAFARE--------------------------------GLCEEAEEIFEQLQGAGI 290
L++A A++ G C+EA +F ++ G+
Sbjct: 242 NMLLDALAKDEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGL 301
Query: 291 EPDVYAYNALME----------AYRLISRM-HMGCEPDRASYNIMVD 326
+V YN LM+ A ++ SRM GC P+ +Y+++++
Sbjct: 302 TLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLN 348
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ C P TY L+ +Y + L++A VF +M++ G P V Y + ID K G
Sbjct: 384 EMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A++++QRM+ P T TY+++IN GKA A +LF EM C PN+ T+
Sbjct: 444 FLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM- 312
++ A+ E A +++ +Q AG +PD Y+ +M EA + + M
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563
Query: 313 GCEPDRASYNIMVDAYGRAG 332
PD Y ++VD +G+AG
Sbjct: 564 NWVPDEPVYGLLVDLWGKAG 583
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI +YG+ + K+A + ++ ++ C P TY L+ + +G L+ A +++ M++ G
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG 459
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P Y+ I+ L K G+ A +F M C P+ T+ +MI L+ KA AL
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
KL+ +M++ +P+ TY+ ++ G EEAE +F ++Q PD Y L++ +
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 27/196 (13%)
Query: 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240
R+ G Y + + L + + ++ M RD C+P+T TY +I+ YG+A+
Sbjct: 351 RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYL 410
Query: 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
A+ +FN+M+ C+P+ TY L++ A+ G + A ++++++Q AG+ PD + Y+ +
Sbjct: 411 KEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVI 470
Query: 301 ME----------AYRLISRM-HMGCEPDRASYNIMVDAYGR----------------AGL 333
+ A+RL M GC P+ ++NIM+ + + AG
Sbjct: 471 INCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGF 530
Query: 334 HEGKCSYSLVELSVKH 349
K +YS+V + H
Sbjct: 531 QPDKVTYSIVMEVLGH 546
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++I G+ A + E++ C P T+ +++ + + E A ++R+M+
Sbjct: 469 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G P V Y+ ++ L G ++A +F M+R P Y L+++L+GKA A
Sbjct: 529 GFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKA 588
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
+ + M +PN+ T +L++ F R EA + + + G+ P + Y L+
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
++I + + ++ A Y ++ ++ P + TY+++++ G LE+AE VF EM++
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
P VY +D K GN KA + +Q M + +P+ T +++ + + + A
Sbjct: 564 NWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEA 623
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283
L M + P++ TYT L++ C +A F+
Sbjct: 624 YNLLQSMLALGLHPSLQTYTLLLSC------CTDARSNFD 657
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 19/223 (8%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSR---CIPTEDTYALLLKAYCMSGLLEKAEAVFREM 180
++++ + + K+AE + LLD + P + Y +++ Y +G EKA VF M
Sbjct: 214 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM 273
Query: 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAV-EIFQRMKRDCCQPSTETYTLMINLYGKASK 239
G+P S V YNS L+ K V +I+ +M+R QP +Y L+I YG+A +
Sbjct: 274 VGKGVPQSTVTYNS----LMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARR 329
Query: 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299
AL +F EM +P Y L++AFA G+ E+A+ +F+ ++ I PD+++Y
Sbjct: 330 EEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTT 389
Query: 300 LMEAY----------RLISRMHM-GCEPDRASYNIMVDAYGRA 331
++ AY + R+ + G EP+ +Y ++ Y +A
Sbjct: 390 MLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKA 432
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
++LI AYG+ AE L P +Y L+++Y G AEA+FR M+
Sbjct: 143 LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 202
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM---KRDCCQPSTETYTLMINLYGKASK 239
G PSA+ Y + ++G ++A E+F+ + K+ +P + Y +MI +Y KA
Sbjct: 203 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 262
Query: 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299
A K+F+ M + TY +L++ E +E +I++Q+Q + I+PDV +Y
Sbjct: 263 YEKARKVFSSMVGKGVPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYAL 319
Query: 300 LMEAYRLISR-----------MHMGCEPDRASYNIMVDAYGRAGLHE 335
L++AY R + G P +YNI++DA+ +G+ E
Sbjct: 320 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVE 366
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
LLI+AYG+ ++A + E+LD+ PT Y +LL A+ +SG++E+A+ VF+ MR+
Sbjct: 319 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 378
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
+ P Y + + + + + A + F+R+K D +P+ TY +I Y KA+
Sbjct: 379 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKM 438
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
++++ +MR K N T +++A R A +++++ G+ PD A N L+
Sbjct: 439 MEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLL 496
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 89/169 (52%)
Query: 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS 194
+K+ Y ++ S P +YALL+KAY + E+A +VF EM G+ P+ YN
Sbjct: 295 YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNI 354
Query: 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK 254
+D G ++A +F+ M+RD P +YT M++ Y AS A K F ++
Sbjct: 355 LLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDG 414
Query: 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
+PNI TY L+ +A+ E+ E++E+++ +GI+ + +M+A
Sbjct: 415 FEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDA 463
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 11/198 (5%)
Query: 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212
+E + +L+ AY G AE V + K G P+ + Y + ++ +GG A IF
Sbjct: 138 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 197
Query: 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK---CKPNICTYTALVNAF 269
+RM+ +PS TY +++ + + K A ++F + K KP+ Y ++ +
Sbjct: 198 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMY 257
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME---AYRLISRMH-----MGCEPDRASY 321
+ G E+A ++F + G G+ YN+LM +Y+ +S+++ +PD SY
Sbjct: 258 KKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSY 317
Query: 322 NIMVDAYGRAGLHEGKCS 339
+++ AYGRA E S
Sbjct: 318 ALLIKAYGRARREEEALS 335
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE Y E++ P TY+ L+ +CM L++A+ +F M
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V YN+ I G K + +E+F+ M + +T TYT +I+ + +A + A
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
+F +M S P+I TY+ L++ G E A +FE LQ + +EPD+Y YN ++E
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G +P+ +Y M+ + R GL E
Sbjct: 512 CKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKE 553
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 17/196 (8%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C P TY +++ C G ++ A ++ ++M + + P V+YN+ ID L N A+
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276
Query: 210 EIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
+F M +P+ TY +I YG+ S A +L ++M K PN+ T++AL+
Sbjct: 277 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD---ASRLLSDMIERKINPNVVTFSALI 333
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCE 315
+AF +EG EAE++++++ I+PD++ Y++L+ + RL HM C
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 393
Query: 316 PDRASYNIMVDAYGRA 331
P+ +YN ++ + +A
Sbjct: 394 PNVVTYNTLIKGFCKA 409
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 27/280 (9%)
Query: 80 NTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAE 139
NTI DA + +D +N+ ++ NK P V+ I + YG+ S A
Sbjct: 260 NTIIDAL----CNYKNVNDALNLFTEMD-NKGIRPNVVTYNSLIRCLCNYGRWS---DAS 311
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
++++ + P T++ L+ A+ G L +AE ++ EM K + P Y+S I+G
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 371
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259
+A +F+ M C P+ TY +I + KA + ++LF EM N
Sbjct: 372 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431
Query: 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRL 306
TYT L++ F + C+ A+ +F+Q+ G+ PD+ Y+ L++ +
Sbjct: 432 VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEY 491
Query: 307 ISRMHMGCEPDRASYNIMVDAYGRAGLHEGK----CSYSL 342
+ R M EPD +YNIM++ +AG E CS SL
Sbjct: 492 LQRSKM--EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ + + + A+ VF++M G+ P + Y+ +DGL G + A+ +F+ +
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+R +P TY +MI KA K LF + KPN+ TYT +++ F R+GL
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
EEA+ +F +++ G PD YN L+ A+
Sbjct: 553 EEADALFREMKEEGPLPDSGTYNTLIRAH 581
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T LL +C + A ++ +M + G P + +N+ I GL + +AV +
Sbjct: 149 PDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVAL 208
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM CQP TY +++N K +AL L +M K +P + Y +++A
Sbjct: 209 VDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
+A +F ++ GI P+V YN+L+ +A RL+S M P+ +
Sbjct: 269 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328
Query: 321 YNIMVDAYGRAG 332
++ ++DA+ + G
Sbjct: 329 FSALIDAFVKEG 340
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY++L+ +C L A AV +M K G P V NS ++G G AV + +M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
QP + T+ +I+ + +++ A+ L + M C+P++ TY +VN + G
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIM 324
+ A + ++++ IEP V YN ++ +A L + M + G P+ +YN +
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297
Query: 325 VDA---YGR 330
+ YGR
Sbjct: 298 IRCLCNYGR 306
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 7/183 (3%)
Query: 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVY 192
SL KK E +E P Y ++ A C + A +F EM G+ P+ V Y
Sbjct: 242 SLLKKMEQGKIE-------PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 193 NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
NS I L G A + M P+ T++ +I+ + K K A KL++EM
Sbjct: 295 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 354
Query: 253 HKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM 312
P+I TY++L+N F +EA+ +FE + P+V YN L++ + R+
Sbjct: 355 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 313 GCE 315
G E
Sbjct: 415 GME 417
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI + Q A+ + +++ +P TY++LL C +G +E A VF +++
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P YN I+G+ K G + ++F + +P+ TYT M++ + + A
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
LF EM+ P+ TY L+ A R+G + E+ +++
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 11/174 (6%)
Query: 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229
L+ A +F +M K PS V ++ + + K + + ++M+ + TY++
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
+IN + + S+ +AL + +M +P+I T +L+N F +A + Q+ G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 290 IEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG 332
+PD + +N L+ EA L+ RM + GC+PD +Y I+V+ + G
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY ++ +C GL E+A+A+FREM++ G P + YN+ I L+ G+ + E+
Sbjct: 534 PNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAEL 593
Query: 212 FQRMKRDCCQPSTETYTLMINLY--GKASKSFMAL 244
+ M+ T L+ N+ G+ KSF+ +
Sbjct: 594 IREMRSCRFVGDASTIGLVTNMLHDGRLDKSFLKM 628
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
F YL+ S+ P TY ++++ C +G +E +F + G+ P+ V Y + + G
Sbjct: 489 FEYLQ--RSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
+ G ++A +F+ MK + P + TY +I + + + +L EMRS
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 112/220 (50%), Gaps = 12/220 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
LLI + + + A+ +L++ + CIP TY LL AY SG +++ +++EM +
Sbjct: 790 LLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTH 849
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPSTETYTLMINLYGKASKSFM 242
+ + +N I GL+K GN A++++ + D P+ TY +I+ K+ + +
Sbjct: 850 ECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYE 909
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
A +LF M + C+PN Y L+N F + G + A +F+++ G+ PD+ Y+ L++
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVD 969
Query: 303 AYRLISRM-----------HMGCEPDRASYNIMVDAYGRA 331
++ R+ G PD YN++++ G++
Sbjct: 970 CLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 4/211 (1%)
Query: 97 DDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDT 156
DD +++ L ++ + P +C LI+ + +A+ + +LD C P
Sbjct: 872 DDALDLYYDLMSDRDFSPT---ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAI 928
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +L+ + +G + A A+F+ M K G+ P Y+ +D L G + + F+ +K
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFAREGLC 275
P Y L+IN GK+ + AL LFNEM++ + P++ TY +L+ G+
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYRL 306
EEA +I+ ++Q AG+EP+V+ +NAL+ Y L
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1079
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 31/228 (13%)
Query: 135 HKKAEFTYLELLDSRC--------------------IPTEDTYALLLKAYCMSGLLEKAE 174
HK TY+ LLD +P T+ +L+ A C +G +A
Sbjct: 324 HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 175 AVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234
MR G+ P+ YN+ I GLL+ A+E+F M+ +P+ TY + I+ Y
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYY 443
Query: 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294
GK+ S AL+ F +M++ PNI A + + A+ G EA++IF L+ G+ PD
Sbjct: 444 GKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDS 503
Query: 295 YAYNALM----------EAYRLISR-MHMGCEPDRASYNIMVDAYGRA 331
YN +M EA +L+S M GCEPD N +++ +A
Sbjct: 504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKA 551
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 13/206 (6%)
Query: 136 KKAEFTYL-ELLDSRCIPTE-DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN 193
K E Y+ +L+ R I + +TY + K+ + G L++A R+MR++G +A YN
Sbjct: 133 KLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYN 192
Query: 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253
I LLK +A+E+++RM + +PS +TY+ ++ GK + L EM +
Sbjct: 193 GLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETL 252
Query: 254 KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--------- 304
KPN+ T+T + R G EA EI +++ G PDV Y L++A
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312
Query: 305 -RLISRMHMG-CEPDRASYNIMVDAY 328
+ +M G +PDR +Y ++D +
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRF 338
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
PT TY + + Y SG A F +M+ G+ P+ V N+ + L K G ++A +I
Sbjct: 431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQI 490
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F +K P + TY +M+ Y K + A+KL +EM + C+P++ +L+N +
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
+EA ++F +++ ++P V YN L+ EA L M GC P+ +
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610
Query: 321 YNIMVD 326
+N + D
Sbjct: 611 FNTLFD 616
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 12/230 (5%)
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
I+ I+ YG+ A T+ ++ P L + +G +A+ +F ++
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
GL P +V YN + K G +A+++ M + C+P +IN KA +
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
A K+F M+ K KP + TY L+ + G +EA E+FE + G P+ +N L +
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 303 AY-----------RLISRMHMGCEPDRASYNIMVDAYGRAG-LHEGKCSY 340
L M MGC PD +YN ++ + G + E C +
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFF 666
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 160 LLKAYCMSGLLEKAEAVFREMRK-YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218
+++ C + A +F + K G+ P YN I GLL+ + A ++F ++K
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278
C P TY +++ YGK+ K +L+ EM +H+C+ N T+ +++ + G ++A
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874
Query: 279 EEIFEQLQGA-GIEPDVYAYNALMEAYRLISRMH-----------MGCEPDRASYNIMVD 326
+++ L P Y L++ R++ GC P+ A YNI+++
Sbjct: 875 LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILIN 934
Query: 327 AYGRAGLHEGKCS 339
+G+AG + C+
Sbjct: 935 GFGKAGEADAACA 947
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 33/280 (11%)
Query: 79 SNTIWDAFDSLPPTHATWDDLINVSVQLRLN---KKWD----PIVLMSCVSILLIEAYGQ 131
+N W+ A D+ ++ S +L N + D PI+ SC G
Sbjct: 712 ANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHN---NVSGA 768
Query: 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVV 191
++L +K FT D P TY LL+ + ++E A+ VF +++ G P
Sbjct: 769 RTLFEK--FTK----DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVAT 822
Query: 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251
YN +D K G + E+++ M C+ +T T+ ++I+ KA AL L+ ++
Sbjct: 823 YNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLM 882
Query: 252 SHK-CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY------ 304
S + P CTY L++ ++ G EA+++FE + G P+ YN L+ +
Sbjct: 883 SDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEA 942
Query: 305 ----RLISRM-HMGCEPDRASYNIMVDA---YGRA--GLH 334
L RM G PD +Y+++VD GR GLH
Sbjct: 943 DAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI +G+ A + ++ P TY++L+ CM G +++ F+E+++
Sbjct: 931 ILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPSTETYTLMINLYGKASKSFM 242
GL P V YN I+GL K ++A+ +F MK P TY +I G A
Sbjct: 991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
A K++NE++ +PN+ T+ AL+ ++ G E A +++ + G P+ Y L
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++++ C P L+ + +++A +F M++ L P+ V YN+ + GL K G
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 587
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
Q+A+E+F+ M + C P+T T+ + + K + +ALK+ +M C P++ TY
Sbjct: 588 KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYN 647
Query: 264 ALVNAFAREGLCEEAEEIFEQLQG---------AGIEPDVYAYNALMEAYRLISRMHMGC 314
++ + G +EA F Q++ + P V + + +AY++I+ C
Sbjct: 648 TIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNC 707
Query: 315 EPDRAS 320
A+
Sbjct: 708 ADQPAN 713
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ + ++ +G + +A + + M G P V Y ID L A E+
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F++MK +P TY +++ + + ++EM P++ T+T LV+A +
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDRAS 320
G EA + + ++ GI P+++ YN L+ +A L M +G +P +
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 321 YNIMVDAYGRAG 332
Y + +D YG++G
Sbjct: 436 YIVFIDYYGKSG 447
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
L+I G+ ++A + E+ SR I P TY L+ ++G++E+A ++ E+++
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232
GL P+ +N+ I G G P+ A ++Q M P+T TY + N
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 50/257 (19%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L+ G+ ++A + ++ C P T+ L C + + A + +M G
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMG 638
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P YN+ I GL+K G ++A+ F +MK+ P T ++ KAS A
Sbjct: 639 CVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFVTLCTLLPGVVKASLIEDAY 697
Query: 245 KLF-NEMRSHKCKPNICTYTALVNAFARE----------------GLCEEAEEI------ 281
K+ N + + +P + L+ + E G+C + + I
Sbjct: 698 KIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIR 757
Query: 282 --------------FEQL-QGAGIEPDVYAYN----ALMEAYRL-------ISRMHMGCE 315
FE+ + G++P + YN L+EA + + GC
Sbjct: 758 YSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCI 817
Query: 316 PDRASYNIMVDAYGRAG 332
PD A+YN ++DAYG++G
Sbjct: 818 PDVATYNFLLDAYGKSG 834
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
++ + + + PT TY LL +G +++A +F M + G PP+ + +N+ D L K
Sbjct: 561 FMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
A+++ +M C P TY +I K + A+ F++M+ P+ T
Sbjct: 621 NDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVT 679
Query: 262 YTALVNAFAREGLCEEAEEIF 282
L+ + L E+A +I
Sbjct: 680 LCTLLPGVVKASLIEDAYKII 700
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR-KYGLPPSAVVYNSYIDGLL 200
+ EL +S P Y L++ S LE+A +F EM+ G+ P YNS I L
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLG 1043
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260
G ++A +I+ ++R +P+ T+ +I Y + K A ++ M + PN
Sbjct: 1044 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTG 1103
Query: 261 TYTALVN 267
TY L N
Sbjct: 1104 TYEQLPN 1110
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI +Y + + E+ IP TY L+ +C SG L A+ +F+EM
Sbjct: 390 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+PPS V Y +DGL G KA+EIF++M++ Y ++I+ ASK A
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 509
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
LF + KP++ TY ++ ++G EA+ +F +++ G PD + YN L+ A
Sbjct: 510 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569
Query: 304 Y----------RLISRMHM-GCEPDRASYNIMVD 326
+ LI M + G D ++ +++D
Sbjct: 570 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ IP T++ L+ + G L +A+ ++ EM G+ P + YNS IDG K
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
+A ++F M C+P TY+++IN Y KA + ++LF E+ S PN TY
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
LV F + G A+E+F+++ G+ P V Y L++
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P E TY +L C SG A +FR+M + + S V Y+ ID L K G+ A+ +
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F M+ + TY+ +I K K+ EM P++ T++AL++ F +
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH-----------MGCEPDRAS 320
EG EA+E++ ++ GI PD YN+L++ + + +H GCEPD +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 321 YNIMVDAYGRA 331
Y+I++++Y +A
Sbjct: 388 YSILINSYCKA 398
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + +++ +A + ++ C P TY++L+ +YC + ++ +FRE+ G
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P+ + YN+ + G + G A E+FQ M PS TY ++++ + AL
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--- 301
++F +M+ + I Y +++ ++A +F L G++PDV YN ++
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535
Query: 302 -------EAYRLISRM-HMGCEPDRASYNIMVDAY-GRAGL 333
EA L +M GC PD +YNI++ A+ G +GL
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 576
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y++++ + C G + A ++F EM G+ V Y+S I GL G ++ + M
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P T++ +I+++ K K A +L+NEM + P+ TY +L++ F +E
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRASYNIMV 325
EA ++F+ + G EPD+ Y+ L+ +Y R+ M + G P+ +YN +V
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 326 DAYGRAG 332
+ ++G
Sbjct: 428 LGFCQSG 434
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY+ L+ C G + + REM + P V +++ ID +K G +A E++ M
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
P T TY +I+ + K + A ++F+ M S C+P+I TY+ L+N++ +
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY--------------RLISRMHMGCEPDRASY 321
++ +F ++ G+ P+ YN L+ + ++SR G P +Y
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR---GVPPSVVTY 458
Query: 322 NIMVDAYGRAG 332
I++D G
Sbjct: 459 GILLDGLCDNG 469
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 12/202 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T++ L+ +C+ G + +A A+ M + P V ++ I+GL G +A+ +
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM QP TY ++N K+ S +AL LF +M K ++ Y+ ++++ +
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
+G ++A +F +++ GI+ DV Y++L+ + +++ M PD +
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317
Query: 321 YNIMVDAYGRAG-LHEGKCSYS 341
++ ++D + + G L E K Y+
Sbjct: 318 FSALIDVFVKEGKLLEAKELYN 339
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
+ L D P TY +++ C G L +A+ +FR+M++ G P YN I L
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 572
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG--KASKSFMAL 244
G +VE+ + MK + T ++I++ + KSF+ +
Sbjct: 573 GSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDM 617
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 144 ELLDSRCI----PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
ELLD + P TY ++ YC SG L +A +F EM+ GL P + VY + +DG
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC---- 255
+ + ++A+ IF K+ C ST + +IN K K+ + ++ N +
Sbjct: 743 CRLNDVERAITIFGTNKKGCAS-STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR------ 309
KPN TY +++ +EG E A+E+F Q+Q A + P V Y +L+ Y + R
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 310 -----MHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLV 343
+ G EPD Y+++++A+ L EG + +LV
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAF----LKEGMTTKALV 896
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 10/223 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI Y +K +A Y ++D + TY +L+ + ++ AE +FREMR G
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P Y I+G K GN QKA IF M + P+ Y +++ + ++ + A
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
+L +EM PN TY +++ + + G EA +F++++ G+ PD + Y L++
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Query: 303 --------AYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGK 337
A + GC A +N +++ + G E K
Sbjct: 743 CRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 11/214 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
I Y + S A+ E+ + +P + L+ YC G + +A + +R M G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ A Y ++GL K A EIF+ M+ P +Y ++IN + K A
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAY------- 297
+F+EM PN+ Y L+ F R G E+A+E+ +++ G+ P+ Y
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Query: 298 ---NALMEAYRLISRMHM-GCEPDRASYNIMVDA 327
L EA+RL M + G PD Y +VD
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 47/251 (18%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E++ S C P Y L+K + + A V +EM++ G+ P YNS I GL K
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN--ICT 261
+A M + +P+ TY I+ Y +AS+ A K EMR PN +CT
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561
Query: 262 ---------------------------------YTALVNAFAREGLCEEAEEIFEQLQGA 288
YT L+N + ++AEEIF +++G
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621
Query: 289 GIEPDVYAYNALMEAYRLISRMHM-----------GCEPDRASYNIMVDAYGRAGLHEGK 337
GI PDV++Y L+ + + M G P+ YN+++ + R+G E K
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIE-K 680
Query: 338 CSYSLVELSVK 348
L E+SVK
Sbjct: 681 AKELLDEMSVK 691
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 120 CVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFRE 179
C + L+I K + + F +E++++ P TY + Y + A+ +E
Sbjct: 489 CYNSLIIGLSKAKRMDEARSF-LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 180 MRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239
MR+ G+ P+ V+ I+ K G +A ++ M +TYT+++N K K
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299
A ++F EMR P++ +Y L+N F++ G ++A IF+++ G+ P+V YN
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 300 LM----------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG 332
L+ +A L+ M + G P+ +Y ++D Y ++G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 83/174 (47%)
Query: 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190
++ + +KA+ + ++ S IP YA L++ YC + + + EM+K + S
Sbjct: 359 KEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPY 418
Query: 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250
Y + + G+ G+ A I + M C+P+ YT +I + + S+ A+++ EM
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+ P+I Y +L+ ++ +EA ++ G++P+ + Y A + Y
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGY 532
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P + TY +++ C G LE A+ +F +M+ L P+ + Y S ++G K G + +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-----CKPNICTYTALV 266
F +P Y+++IN + K + AL L ++M + CK +I T AL+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPD 293
+ FA+ G E AE++ E + PD
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 4/202 (1%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LIE Y ++ ++ +E+ + + TY ++K C SG L+ A + +EM G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V+Y + I L+ A+ + + MK P Y +I KA + A
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
EM + KPN TY A ++ + A++ ++++ G+ P+ L+ Y
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY 567
Query: 305 RLISRMHMGCEPDRASYNIMVD 326
++ C ++Y MVD
Sbjct: 568 CKKGKVIEAC----SAYRSMVD 585
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 23/207 (11%)
Query: 156 TYALLLKAYCMSG-------LLEKAEAVFR--------------EMRKYGLPPSAVVYNS 194
TY +L+ A+C +G +L K E FR M GL P Y+
Sbjct: 223 TYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDV 282
Query: 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK 254
IDGL K + A + M TY+L+I+ K + A L +EM SH
Sbjct: 283 LIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHG 342
Query: 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGC 314
Y + ++EG+ E+A+ +F+ + +G+ P AY +L+E Y + G
Sbjct: 343 INIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGY 402
Query: 315 E--PDRASYNIMVDAYGRAGLHEGKCS 339
E + NI++ Y + +G CS
Sbjct: 403 ELLVEMKKRNIVISPYTYGTVVKGMCS 429
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
A+ + ++ ++ +PT TY LL Y G + VF E G+ P ++Y+ I+
Sbjct: 824 AKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIIN 883
Query: 198 GLLKGGNPQKAVEIFQRM-----KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
LK G KA+ + +M D C+ S T +++ + K + +A K+ M
Sbjct: 884 AFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVR 943
Query: 253 HKCKPNICTYTALVN 267
+ P+ T L+N
Sbjct: 944 LQYIPDSATVIELIN 958
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 11/222 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ +AE Y E++ P TY+ L+ +CM L++A+ +F M
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ V Y++ I G K ++ +E+F+ M + +T TYT +I+ + +A A
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME-- 302
+F +M S PNI TY L++ + G +A +FE LQ + +EPD+Y YN ++E
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Query: 303 --------AYRLISRMHM-GCEPDRASYNIMVDAYGRAGLHE 335
+ L + + G P+ +YN M+ + R G E
Sbjct: 514 CKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 80 NTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAE 139
NTI D + DD +N+ ++ NK P V I + YG+ S A
Sbjct: 262 NTIIDGL----CKYKHMDDALNLFTEMD-NKGIRPDVFTYSSLISCLCNYGRWS---DAS 313
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
++++ + P T++ L+ A+ G L +AE ++ EM K + P Y+S I+G
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259
+A +F+ M C P+ TY+ +I + KA + ++LF EM N
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433
Query: 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA-------------YRL 306
TYT L++ F + C+ A+ +F+Q+ G+ P++ YN L++ +
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493
Query: 307 ISRMHMGCEPDRASYNIMVDAYGRAG 332
+ R M EPD +YNIM++ +AG
Sbjct: 494 LQRSTM--EPDIYTYNIMIEGMCKAG 517
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 20/215 (9%)
Query: 134 LHKKA-EFTYL--ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190
LH KA E L +++ C P TY ++ C G ++ A ++ ++M K + V
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 259
Query: 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLF 247
+YN+ IDGL K + A+ +F M +P TY+ +I+ YG+ S A +L
Sbjct: 260 IYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD---ASRLL 316
Query: 248 NEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--- 304
++M K PN+ T++AL++AF +EG EAE++++++ I+PD++ Y++L+ +
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376
Query: 305 -RLISRMHM-------GCEPDRASYNIMVDAYGRA 331
RL HM C P+ +Y+ ++ + +A
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKA 411
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ + + + A+ VF++M G+ P+ + YN +DGL K G KA+ +F+ +
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+R +P TY +MI KA K +LF + PN+ Y +++ F R+G
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSK 554
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEA 303
EEA+ + ++++ G P+ YN L+ A
Sbjct: 555 EEADSLLKKMKEDGPLPNSGTYNTLIRA 582
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T + LL YC S + A A+ +M + G P + + I GL +AV +
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL 210
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+M + CQP TY ++N K +AL L +M K + ++ Y +++ +
Sbjct: 211 VDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 270
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F ++ GI PDV+ Y++L+ +A RL+S M P+ +
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330
Query: 321 YNIMVDAYGRAG 332
++ ++DA+ + G
Sbjct: 331 FSALIDAFVKEG 342
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY++ + +C L A AV +M K G P V +S ++G AV + +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+P T T+T +I+ L+ KAS+ A+ L ++M C+P++ TY +VN +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASE---AVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASY 321
G + A + ++++ IE DV YN ++ +A L + M + G PD +Y
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY 296
Query: 322 NIMVDA---YGR 330
+ ++ YGR
Sbjct: 297 SSLISCLCNYGR 308
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI + Q A+ + +++ P TY +LL C +G L KA VF +++
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P YN I+G+ K G + E+F + P+ Y MI+ + + A
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293
L +M+ PN TY L+ A R+G E + E+ ++++ G D
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229
++ A +F +M K PS V +N + + K + + + ++M+ TY++
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289
IN + + S+ +AL + +M +P+I T ++L+N + +A + +Q+ G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 290 IEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+PD + + L+ EA L+ +M GC+PD +Y +V+ + G
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 11/195 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
+++ SR P+ + LL A E ++ +M+ G+ Y+ +I+ +
Sbjct: 73 DMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRS 132
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
A+ + +M + +P T + ++N Y + + A+ L ++M KP+ T+T
Sbjct: 133 QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFT 192
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG 313
L++ EA + +Q+ G +PD+ Y ++ A L+ +M G
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKG 252
Query: 314 -CEPDRASYNIMVDA 327
E D YN ++D
Sbjct: 253 KIEADVVIYNTIIDG 267
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+L++ + KA + L S P TY ++++ C +G +E +F +
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243
G+ P+ + YN+ I G + G+ ++A + ++MK D P++ TY +I + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 244 LKLFNEMRS 252
+L EMRS
Sbjct: 593 AELIKEMRS 601
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ +C G E+A+++ ++M++ G P++ YN+ I L+ G+ + + E+
Sbjct: 536 PNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAEL 595
Query: 212 FQRMKRDCCQPSTETYTLMINLY--GKASKSFMAL 244
+ M+ T L+ N+ G+ KSF+ +
Sbjct: 596 IKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 630
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 29/221 (13%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-PSAVVYNSYIDGLLKGGNPQKAVE 210
P + +L+K +C +G + A V EM++ G+ P+++ Y++ +D L ++AVE
Sbjct: 194 PNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVE 253
Query: 211 IFQRM-KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+F+ M ++ P T+ +MIN + +A + A K+ + M+ + C PN+ Y+AL+N F
Sbjct: 254 LFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGF 313
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHMG-CEPDR 318
+ G +EA++ F++++ G++ D Y LM EA +L+ M C D
Sbjct: 314 CKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADT 373
Query: 319 ASYNI----------------MVDAYGRAGLHEGKCSYSLV 343
+YN+ M+D +G G+H K SY ++
Sbjct: 374 LTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRII 414
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ +++ +C +G +E+A+ + M+K G P+ Y++ ++G K G Q+A +
Sbjct: 266 PDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQT 325
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F +K+ + T YT ++N + + ++ A+KL EM++ +C+ + TY ++ +
Sbjct: 326 FDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSS 385
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
EG EEA ++ +Q G+ + +Y ++ +A + +S M G P A+
Sbjct: 386 EGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHAT 445
Query: 321 YNIMVDAYGRAGLHE 335
+N +V +G E
Sbjct: 446 WNELVVRLCESGYTE 460
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKA 208
C E + L++ + S L +K +F ++ + PS ++ ++ L+ G +
Sbjct: 120 CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLS 179
Query: 209 VEIFQRMKRDC-CQPSTETYTLMINLYGKASKSFMALKLFNEM-RSHKCKPNICTYTALV 266
++ K + QP+T + +++ + K A + EM RS PN TY+ L+
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLM 239
Query: 267 NAFAREGLCEEAEEIFEQL-QGAGIEPDVYAYNALMEAY----------RLISRMHM-GC 314
+ +EA E+FE + GI PD +N ++ + +++ M GC
Sbjct: 240 DCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGC 299
Query: 315 EPDRASYNIMVDAYGRAG-LHEGKCSYSLVE 344
P+ +Y+ +++ + + G + E K ++ V+
Sbjct: 300 NPNVYNYSALMNGFCKVGKIQEAKQTFDEVK 330
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 61/147 (41%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y L+ +C +G ++A + EM+ + YN + GL G ++A+++ +
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWG 400
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
+ + +Y +++N + A+K + M P+ T+ LV G E
Sbjct: 401 SEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTE 460
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEA 303
+ G+ P ++ A++E+
Sbjct: 461 IGVRVLIGFLRIGLIPGPKSWGAVVES 487
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 190 VVYNSYIDGLLKGGNPQKAVEIFQRM-KRDCCQPSTETYTLMINLYGKASKSFMALKLFN 248
+ + S + + + +PQ ++IF + ++ + TY+++++ + K + +
Sbjct: 54 ISHESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILH 113
Query: 249 EMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG-AGIEPDVYA----YNALMEA 303
+M+ C+ + L+ F+R L ++ E+F +Q A ++P + A N L+++
Sbjct: 114 QMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDS 173
Query: 304 --------YRLISRMHMGCEPDRASYNIMVDAYGRAG 332
L ++ ++G +P+ +NI+V + + G
Sbjct: 174 GEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNG 210
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
+Y ++L A C +G LEKA M + G+ P +N + L + G + V +
Sbjct: 410 SYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLIGF 469
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
R P +++ ++ K K +L + + S
Sbjct: 470 LRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 11/195 (5%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
+LE+ C P TY L+ C G +++A+ +F EM + P+ V Y S I+GL
Sbjct: 180 FLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
N +A+ + MK +P+ TY+ +++ K +S A++LF M + C+PN+ T
Sbjct: 240 SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM--------- 312
YT L+ +E +EA E+ +++ G++PD Y ++ + IS+
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMI 359
Query: 313 --GCEPDRASYNIMV 325
G P+R ++NI V
Sbjct: 360 LGGITPNRLTWNIHV 374
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 29/290 (10%)
Query: 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHA---TWDDLINVSVQLRL---NK---KWDPI 115
T Q+++ ++ E D FDS +A D + LRL NK D I
Sbjct: 15 TPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLI 74
Query: 116 VLM---SCV---SILLIEAYGQKSLHKKAEF--TYLELLDSRCIPTEDTYALLLKAYCMS 167
V M +CV ILL G +H+ + + ++ D C P++ Y +L
Sbjct: 75 VRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEE 134
Query: 168 GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG-GNPQKAVEIFQRMKRDCCQPSTET 226
L A ++ MR+ GLPP+ N I L + G ++IF M + C P + T
Sbjct: 135 NQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYT 194
Query: 227 YTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
Y +I+ + + A KLF EM C P + TYT+L+N +EA E+++
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMK 254
Query: 287 GAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRASYNIMV 325
GIEP+V+ Y++LM+ R + M + GC P+ +Y ++
Sbjct: 255 SKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196
+A+ + E+++ C PT TY L+ C S +++A EM+ G+ P+ Y+S +
Sbjct: 210 EAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLM 269
Query: 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK 256
DGL K G +A+E+F+ M C+P+ TYT +I K K A++L + M K
Sbjct: 270 DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLK 329
Query: 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEP 316
P+ Y +++ F EA +++ GI P+ +N ++ + R P
Sbjct: 330 PDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYP 389
Query: 317 DRA 319
RA
Sbjct: 390 SRA 392
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 200 LKGGNPQKAVE-IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258
L N KA E + RMK + C S + + YG+ + F +L++F++M+ C P+
Sbjct: 61 LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120
Query: 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-----------RLI 307
Y ++ E A + ++ ++ G+ P V + N L++A ++
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180
Query: 308 SRM-HMGCEPDRASYNIMVDAYGRAG 332
M GC+PD +Y ++ R G
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRFG 206
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 172 KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231
+A ++ MR G+ S + L K G QKAV++ + D C PS T+ L+I
Sbjct: 391 RAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450
Query: 232 ------NLYGKASKSFM 242
+ G+AS + +
Sbjct: 451 GHTLDKTIVGEASDTLL 467
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 11/227 (4%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I + ++ KA TY E+LD +P TY ++ A C + ++KA V M K G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P + YNS + G G P++A+ ++M+ D +P TY+L+++ K + A
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K+F+ M KP I TY L+ +A +G E + + + GI PD Y ++ L+ AY
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 305 R----------LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSY 340
+ S+M G P+ +Y ++ ++G E Y
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +Y ++ + G +KA + + EM G+ P V YNS I L K KA+E+
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M ++ P TY +++ Y + + A+ +MRS +P++ TY+ L++ +
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRL---ISRMH--------MGCEPDRAS 320
G C EA +IF+ + G++P++ Y L++ Y + MH G PD
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 321 YNIMVDAYGRAG 332
++I++ AY + G
Sbjct: 374 FSILICAYAKQG 385
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
+LI AY ++ +A + ++ P TY ++ C SG +E A F +M
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 435
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVE-IFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
GL P +VYNS I GL ++A E I + + R C +T + +I+ + K +
Sbjct: 436 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCKEGRVIE 494
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
+ KLF M KPN+ TY L+N + G +EA ++ + G++P+ Y+ L+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Query: 303 AYRLISRMH-----------MGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVK 348
Y ISRM G PD +YNI++ GL + + + + EL V+
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GLFQTRRTAAAKELYVR 606
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195
+ A + +++D P Y L+ C E+AE + EM G+ + + +NS
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482
Query: 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255
ID K G ++ ++F+ M R +P+ TY +IN Y A K A+KL + M S
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYR 305
KPN TY+ L+N + + E+A +F++++ +G+ PD+ YN +++ A
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 306 LISRM-HMGCEPDRASYNIMV 325
L R+ G + + ++YNI++
Sbjct: 603 LYVRITESGTQIELSTYNIIL 623
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +++L+ AY G +++A VF +MR+ GL P+AV Y + I L K G + A+
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F++M + P Y +I+ +K A +L EM N + +++++ +
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH-----------MGCEPDRAS 320
EG E+E++FE + G++P+V YN L+ Y L +M +G +P+ +
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548
Query: 321 YNIMVDAY 328
Y+ +++ Y
Sbjct: 549 YSTLINGY 556
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 107/211 (50%), Gaps = 11/211 (5%)
Query: 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195
++AE LE+LD + ++ ++C G + ++E +F M + G+ P+ + YN+
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517
Query: 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255
I+G G +A+++ M +P+T TY+ +IN Y K S+ AL LF EM S
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYR 305
P+I TY ++ + A+E++ ++ +G + ++ YN ++ +A +
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQ 637
Query: 306 LISRM-HMGCEPDRASYNIMVDAYGRAGLHE 335
+ + M + + ++NIM+DA + G ++
Sbjct: 638 MFQNLCLMDLKLEARTFNIMIDALLKVGRND 668
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 14/197 (7%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREM---RKYGLPPSAVVYNSYIDGLLKGGNPQ 206
CIP +Y +LLK C ++A + M R G PP V Y + I+G K G+
Sbjct: 154 CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213
Query: 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266
KA + M P TY +I KA A+++ N M + P+ TY +++
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 273
Query: 267 NAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL----------MEAYRLISRM-HMGCE 315
+ + G +EA ++++ G+EPDV Y+ L MEA ++ M G +
Sbjct: 274 HGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLK 333
Query: 316 PDRASYNIMVDAYGRAG 332
P+ +Y ++ Y G
Sbjct: 334 PEITTYGTLLQGYATKG 350
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY+LL+ C +G +A +F M K GL P Y + + G G + +
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 358
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M R+ P ++++I Y K K A+ +F++MR PN TY A++ +
Sbjct: 359 LDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
G E+A FEQ+ G+ P YN+L+
Sbjct: 419 SGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHG 450
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 124/302 (41%), Gaps = 29/302 (9%)
Query: 67 QQILRFVQREVDSNTIWDAFDSLPPTHATWDDLIN----VSVQLRLNKKWDPIVLMSCVS 122
+ IL + R + NTI+ F+S+ +H +I + +R+ K + I +
Sbjct: 462 ELILEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT--- 516
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
LI Y +A ++ P TY+ L+ YC +E A +F+EM
Sbjct: 517 --LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
G+ P + YN + GL + A E++ R+ Q TY ++++ K +
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
AL++F + K T+ +++A + G +EA+++F G+ P+ + Y + E
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694
Query: 303 AY-----------RLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSV---K 348
+S GC D N +V R L G+ + + LS+ K
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV----RELLQRGEITRAGTYLSMIDEK 750
Query: 349 HY 350
H+
Sbjct: 751 HF 752
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P E TY +L C SG A + R+M + + AV Y+ IDGL K G+ A +
Sbjct: 226 PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNL 285
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F M+ + TY +I + A + KL +M K PN+ T++ L+++F +
Sbjct: 286 FNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK 345
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRAS 320
EG EA+++ +++ GI P+ YN+L++ + RL + M GC+PD +
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMT 405
Query: 321 YNIMVDAYGRA 331
+NI+++ Y +A
Sbjct: 406 FNILINGYCKA 416
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 87/160 (54%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
+++ + P T+++L+ ++ G L +A+ + +EM + G+ P+ + YNS IDG K
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
++A+++ M C P T+ ++IN Y KA++ L+LF EM N TY
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
LV F + G E A+++F+++ + PD+ +Y L++
Sbjct: 443 TLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 11/187 (5%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y++++ C G L+ A +F EM G + YN+ I G G ++ + M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
+ P+ T++++I+ + K K A +L EM PN TY +L++ F +E E
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRASYNIMV 325
EA ++ + + G +PD+ +N L+ Y +R+ G E + +YN +V
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Query: 326 DAYGRAG 332
+ ++G
Sbjct: 446 QGFCQSG 452
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ +C +G + + R+M K + P+ V ++ ID +K G ++A ++ + M
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+ P+T TY +I+ + K ++ A+++ + M S C P+I T+ L+N + +
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMG-----------CEPDRASYNIM 324
++ E+F ++ G+ + YN L++ + ++ + PD SY I+
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKIL 479
Query: 325 VDAYGRAGLHE------GKCSYSLVELSVKHY 350
+D G E GK S +EL + Y
Sbjct: 480 LDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 8/242 (3%)
Query: 66 AQQILR-FVQREVDSNTIWDAFDSLPPTHATWDDLINV--SVQLRLNKKWDPIVLMSCVS 122
A Q+L+ +QR + NTI ++SL + L V L ++K DP ++ +
Sbjct: 352 ADQLLKEMMQRGIAPNTI--TYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNI- 408
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182
LI Y + + + E+ I TY L++ +C SG LE A+ +F+EM
Sbjct: 409 --LINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
+ P V Y +DGL G +KA+EIF ++++ + Y ++I+ ASK
Sbjct: 467 RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDD 526
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
A LF + K + Y +++ R+ +A+ +F ++ G PD YN L+
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586
Query: 303 AY 304
A+
Sbjct: 587 AH 588
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P + LL C+ + +A + M + G P+ + N+ ++GL G AV +
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM QP+ TY ++N+ K+ ++ +A++L +M K + Y+ +++ +
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRAS 320
+G + A +F +++ G + D+ YN L+ + R G + P+ +
Sbjct: 276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335
Query: 321 YNIMVDAYGRAG 332
+++++D++ + G
Sbjct: 336 FSVLIDSFVKEG 347
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
T ++++ +C L A + ++ K G P V++N+ ++GL +A+E+ RM
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+P+ T ++N L GK S A+ L + M +PN TY ++N +
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSD---AVVLIDRMVETGFQPNEVTYGPVLNVMCKS 241
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHM-GCEPDRASY 321
G A E+ +++ I+ D Y+ +++ A+ L + M + G + D +Y
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301
Query: 322 NIMVDAYGRAG 332
N ++ + AG
Sbjct: 302 NTLIGGFCNAG 312
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ + Q + A+ + E++ R P +Y +LL C +G LEKA +F ++ K
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ +Y I G+ A ++F + + Y +MI+ + A
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294
LF +M P+ TY L+ A + A E+ E+++ +G DV
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADV 613
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 167 SGLL----EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222
SGL+ + A +FR+M + P+ + +N + K + + + ++M+
Sbjct: 62 SGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAH 121
Query: 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282
S T ++MIN + + K A ++ +P+ + L+N E EA E+
Sbjct: 122 SIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELV 181
Query: 283 EQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRA 331
+++ G +P + N L+ +A LI RM G +P+ +Y +++ ++
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS 241
Query: 332 G 332
G
Sbjct: 242 G 242
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 194 SYIDGL---LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250
SY D L L G AV++F+ M + P+ + + + K + + L L +M
Sbjct: 55 SYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM 114
Query: 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--------- 301
S +I T + ++N F R A ++ G EPD +N L+
Sbjct: 115 ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRV 174
Query: 302 -EAYRLISRM-HMGCEPDRASYNIMVDA 327
EA L+ RM MG +P + N +V+
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNG 202
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +++ C L KA+ +FR+M + G P + YN I L + A E+ + MK
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Query: 217 RDCCQPSTETYTLMINLY--GKASKSFMAL 244
T ++IN+ G+ KSF+ +
Sbjct: 606 SSGFPADVSTVKMVINMLSSGELDKSFLDM 635
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T L+ +C + A ++ +M + G P V YN+ ID L K A +
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F+ ++R +P+ TYT ++N +S+ A +L ++M K PN+ TY+AL++AF +
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH-----------MGCEPDRAS 320
G EA+E+FE++ I+PD+ Y++L+ L R+ GC D S
Sbjct: 273 NGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 332
Query: 321 YNIMVDAYGRA 331
YN +++ + +A
Sbjct: 333 YNTLINGFCKA 343
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
+++ + P TY+ LL A+ +G + +A+ +F EM + + P V Y+S I+GL
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
+A ++F M C +Y +IN + KA + +KLF EM N TY
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
L+ F + G ++A+E F Q+ GI PD++ YN L+
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 407
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ + C + + A F+E+ + G+ P+ V Y + ++GL A +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M + P+ TY+ +++ + K K A +LF EM P+I TY++L+N
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRAS 320
+EA ++F+ + G DV +YN L+ + +L M G + +
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367
Query: 321 YNIMVDAYGRAG 332
YN ++ + +AG
Sbjct: 368 YNTLIQGFFQAG 379
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 12/229 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++A+ + +A+ + E++ P TY+ L+ C+ +++A +F M G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
V YN+ I+G K + +++F+ M + +T TY +I + +A A
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--- 301
+ F++M P+I TY L+ G E+A IFE +Q ++ D+ Y ++
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 445
Query: 302 -------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG-LHEGKCSYS 341
EA+ L + + G +PD +Y M+ G LHE + Y+
Sbjct: 446 CKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYT 494
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 9/212 (4%)
Query: 88 SLPPTHATWDDLIN-VSVQLRL---NKKWDPIVLMSCVSIL-----LIEAYGQKSLHKKA 138
S+ P T+ LIN + + R+ N+ +D +V C++ + LI + + +
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349
Query: 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198
+ E+ + TY L++ + +G ++KA+ F +M +G+ P YN + G
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Query: 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258
L G +KA+ IF+ M++ TYT +I K K A LF + KP+
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469
Query: 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290
I TYT +++ +GL E E ++ +++ G+
Sbjct: 470 IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 103/197 (52%), Gaps = 12/197 (6%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ L+ YC +G LE A ++++EMR+ + + V Y + IDG K G Q+A E+
Sbjct: 196 PNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEM 255
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ RM D +P++ YT +I+ + + S A+K +M + + +I Y +++
Sbjct: 256 YSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCG 315
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRAS 320
G +EA EI E ++ + + PD+ + +M AY R+ + ++M G EPD +
Sbjct: 316 NGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVA 375
Query: 321 YNIMVDAYGRAG-LHEG 336
+ M+D + G LHE
Sbjct: 376 LSTMIDGIAKNGQLHEA 392
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 12/162 (7%)
Query: 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKL 246
P+ V Y+++ID K G Q A++ F MKRD P+ T+T +I+ Y KA +A+ L
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220
Query: 247 FNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-- 304
+ EMR + N+ TYTAL++ F ++G + AEE++ ++ +EP+ Y +++ +
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280
Query: 305 --------RLISRM-HMGCEPDRASYNIMVDAY-GRAGLHEG 336
+ +++M + G D +Y +++ G L E
Sbjct: 281 RGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEA 322
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 117/257 (45%), Gaps = 20/257 (7%)
Query: 92 THATWDDLINVSVQLRL------NKKWDP----IVLMSCVSILLIEAYGQKSLHKKAEFT 141
T++TW D S +L+L + K D +V +C LI+ Y + + A
Sbjct: 165 TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTC----LIDGYCKAGDLEVAVSL 220
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
Y E+ R TY L+ +C G +++AE ++ M + + P+++VY + IDG +
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
G+ A++ +M + Y ++I+ K A ++ +M P++
Sbjct: 281 RGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVI 340
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGC------E 315
+T ++NA+ + G + A ++ +L G EPDV A + +++ ++H +
Sbjct: 341 FTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEK 400
Query: 316 PDRASYNIMVDAYGRAG 332
+ Y +++DA + G
Sbjct: 401 ANDVMYTVLIDALCKEG 417
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 48/229 (20%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P ++ ++ C G ++ AE + M ++G P + YNS IDG + G+ + A +
Sbjct: 54 PHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLV 113
Query: 212 -------------------------FQRMKR------------DCCQPSTETYTLMINLY 234
F +MK CC P+ TY+ I+ +
Sbjct: 114 LESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTF 173
Query: 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294
K+ + +ALK F+ M+ PN+ T+T L++ + + G E A ++++++ + +V
Sbjct: 174 CKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNV 233
Query: 295 YAYNALMEAY----------RLISRM-HMGCEPDRASYNIMVDAYGRAG 332
Y AL++ + + SRM EP+ Y ++D + + G
Sbjct: 234 VTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRG 282
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +L+ A C G + E +F ++ + GL P +Y S+I GL K GN A ++ RM
Sbjct: 406 YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMV 465
Query: 217 RDCCQPSTETYTLMINLYGKASKSFM--ALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274
++ YT +I YG ASK M A ++F+EM + P+ + L+ A+ +EG
Sbjct: 466 QEGLLLDLLAYTTLI--YGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGN 523
Query: 275 CEEAEEIFEQLQGAGI 290
A ++ +Q G+
Sbjct: 524 MAAASDLLLDMQRRGL 539
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 42/193 (21%)
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
S +P + ++ AY SG ++ A ++ ++ + G P V ++ IDG+ K G +
Sbjct: 332 SDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHE 391
Query: 208 AVEIFQRMKRDCCQPSTET-YTLMIN-------------LYGKASKS------FM----- 242
A+ F C + + + YT++I+ L+ K S++ FM
Sbjct: 392 AIVYF------CIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWI 445
Query: 243 -----------ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIE 291
A KL M ++ YT L+ A +GL EA ++F+++ +GI
Sbjct: 446 AGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGIS 505
Query: 292 PDVYAYNALMEAY 304
PD ++ L+ AY
Sbjct: 506 PDSAVFDLLIRAY 518
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY---GKASKS 240
G P +NS + + K G + A +I M R C+P +Y +I+ + G +
Sbjct: 51 GYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSA 110
Query: 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
+ L+ CKP+I ++ +L N F++ + +E ++ + P+V Y+
Sbjct: 111 SLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEV-FVYMGVMLKCCSPNVVTYSTW 169
Query: 301 MEAYRLISRMHMGCE-----------PDRASYNIMVDAYGRAG 332
++ + + + + P+ ++ ++D Y +AG
Sbjct: 170 IDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAG 212
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTAL 265
++A++ R+++ P T I+ ++ ++LK + S P+ ++ ++
Sbjct: 3 REALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSV 62
Query: 266 VNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--------------RLISRMH 311
V+ + G + AE+I + G EPDV +YN+L++ + L +
Sbjct: 63 VSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHG 122
Query: 312 MGCEPDRASYNIMVDAYGR 330
C+PD S+N + + + +
Sbjct: 123 FICKPDIVSFNSLFNGFSK 141
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY ++L +C+ KA V +EM + G+ P+ YN+ + G + G + A E F M
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
K+ C+ TYT +++ +G A + A +F+EM P++ TY A++ ++
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 316
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRASYNIM 324
E A +FE++ G EP+V YN L+ L+ RM + GCEP+ +YN+M
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 376
Query: 325 VDAY 328
+ Y
Sbjct: 377 IRYY 380
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 117/253 (46%), Gaps = 17/253 (6%)
Query: 63 SPTAQQILR-FVQREVDSN-----TIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIV 116
+P A ++L+ V+R ++ N T+ F W+ L + K+ I
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFF------LEMKKRDCEID 264
Query: 117 LMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAV 176
+++ ++ + +G K+A + E++ +P+ TY +++ C +E A +
Sbjct: 265 VVTYTTV--VHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 177 FREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK 236
F EM + G P+ YN I GL G + E+ QRM+ + C+P+ +TY +MI Y +
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 237 ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEE---AEEIFEQLQGAGIEPD 293
S+ AL LF +M S C PN+ TY L++ E+ A ++ ++ G P
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPR 442
Query: 294 VYAYNALMEAYRL 306
+ +N ++ L
Sbjct: 443 KFTFNRVLNGLLL 455
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 94 ATWDDLINVSVQLRLNKK-WDPIVLMSCVSI--------LLIEAYGQKSLHKKAEFTYLE 144
+++D I+++ +L L+ W I M + I ++ E Y KA +L
Sbjct: 92 SSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLN 151
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
+ + C ++ +L C S +EKA +FR +R V YN ++G
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKR 210
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
KA+E+ + M P+ TY M+ + +A + A + F EM+ C+ ++ TYT
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTT 270
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-HMG 313
+V+ F G + A +F+++ G+ P V YNA+++ A + M G
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRG 330
Query: 314 CEPDRASYNIMVDAYGRAG 332
EP+ +YN+++ AG
Sbjct: 331 YEPNVTTYNVLIRGLFHAG 349
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E+++ P TY +LK + +G + A F EM+K V Y + + G G
Sbjct: 220 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 279
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
++A +F M R+ PS TY MI + K A+ +F EM +PN+ TY
Sbjct: 280 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMG 313
L+ G EE+ ++++ G EP+ YN ++ Y L +M G
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399
Query: 314 -CEPDRASYNIMVDA 327
C P+ +YNI++
Sbjct: 400 DCLPNLDTYNILISG 414
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEK---AEAVFREM 180
++I Y + S +KA + ++ C+P DTY +L+ + E A + EM
Sbjct: 375 MMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEM 434
Query: 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213
+ G P +N ++GLL GN A EI +
Sbjct: 435 VERGFIPRKFTFNRVLNGLLLTGNQAFAKEILR 467
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 30/289 (10%)
Query: 63 SPTAQQILRFVQREVDSNTI-----WDAF---DSLPPTHATWDDLINVSVQLRLNKKWDP 114
S +Q + ++++++ N + DAF +DD+I S+ DP
Sbjct: 312 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI--------DP 363
Query: 115 IVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAE 174
+ L+ + KA+ + ++ C P TY L+K +C S +E
Sbjct: 364 DIFTYNS---LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 175 AVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234
+FREM GL V Y + I GL G+ A ++F++M D P TY+++++
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
Query: 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294
K AL++F+ M+ + K +I YT ++ + G ++ ++F L G++P+V
Sbjct: 481 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNV 540
Query: 295 YAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
YN ++ EAY L+ +M G P+ +YN ++ A+ R G
Sbjct: 541 VTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 134 LHKKA-EFTYL--ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190
LH KA E L ++ C P TY +++ C G + A + +M + V
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261
Query: 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL---YGKASKSFMALKLF 247
++N+ ID L K + A+ +F+ M+ +P+ TY+ +I+ YG+ S A +L
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD---ASQLL 318
Query: 248 NEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLI 307
++M K PN+ T+ AL++AF +EG EAE++++ + I+PD++ YN+L+ + +
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378
Query: 308 SRMHMG-----------CEPDRASYNIMVDAYGRA 331
R+ C PD +YN ++ + ++
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 413
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P+ T + LL YC + A A+ +M + G P + + + I GL +AV +
Sbjct: 153 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 212
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM + CQP+ TY +++N K + +AL L N+M + K + ++ + ++++ +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
++A +F++++ GI P+V Y++L+ +A +L+S M P+ +
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332
Query: 321 YNIMVDAYGRAG 332
+N ++DA+ + G
Sbjct: 333 FNALIDAFVKEG 344
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 8/224 (3%)
Query: 80 NTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAE 139
NTI D+ + DD +N+ ++ K P V+ I + +YG+ S A
Sbjct: 264 NTIIDSL----CKYRHVDDALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWS---DAS 315
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
++++ + P T+ L+ A+ G +AE ++ +M K + P YNS ++G
Sbjct: 316 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259
KA ++F+ M C P TY +I + K+ + +LF EM +
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435
Query: 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
TYT L+ +G C+ A+++F+Q+ G+ PD+ Y+ L++
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY +L+ +C + A A+ +M K G PS V +S ++G G AV + +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 216 KRDCCQPSTETYTLMIN---LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+P T T+T +I+ L+ KAS+ A+ L + M C+PN+ TY +VN +
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASE---AVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASY 321
G + A + +++ A IE DV +N ++ +A L M G P+ +Y
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 298
Query: 322 NIMVD---AYGR 330
+ ++ +YGR
Sbjct: 299 SSLISCLCSYGR 310
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
+ ++ + C ++ A +F+EM G+ P+ V Y+S I L G A ++ M
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
P+ T+ +I+ + K K A KL+++M P+I TY +LVN F +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEPDRASYNIMV 325
+A+++FE + PDV YN L++ + L M H G D +Y ++
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 326 DAYGRAGLHEGKC 338
H+G C
Sbjct: 443 QGL----FHDGDC 451
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
A+ + +++ P TY++LL C +G LEKA VF M+K + +Y + I+
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM--ALKLFNEMRSHKC 255
G+ K G ++F + +P+ TY MI+ G SK + A L +M+
Sbjct: 514 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS--GLCSKRLLQEAYALLKKMKEDGP 571
Query: 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286
PN TY L+ A R+G + E+ +++
Sbjct: 572 LPNSGTYNTLIRAHLRDGDKAASAELIREMR 602
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y +++ C +G ++ +F + G+ P+ V YN+ I GL Q+A + ++MK
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252
D P++ TY +I + + + +L EMRS
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 83/194 (42%), Gaps = 11/194 (5%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
++ SR +P+ + LL A + ++ +M++ + YN I+ +
Sbjct: 76 MVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQ 135
Query: 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTA 264
A+ + +M + +PS T + ++N Y + A+ L ++M +P+ T+T
Sbjct: 136 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 195
Query: 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHMG- 313
L++ EA + +++ G +P++ Y ++ A L+++M
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 255
Query: 314 CEPDRASYNIMVDA 327
E D +N ++D+
Sbjct: 256 IEADVVIFNTIIDS 269
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
A+ +F M + PS + +++ K K + + L +M+ + + TY L+N
Sbjct: 69 AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILIN 128
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM-HMGCEP 316
F R A + ++ G EP + ++L+ Y L+ +M MG P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 317 DRASYNIMV 325
D ++ ++
Sbjct: 189 DTITFTTLI 197
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 136 KKAEFTYL--ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN 193
K+AE L ++++ C P TY +L C SG A + R+M + + AV Y+
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253
IDGL K G+ A +F M+ + TY ++I + A + KL +M
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 254 KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--------- 304
K PN+ T++ L+++F +EG EAEE+ +++ GI PD Y +L++ +
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387
Query: 305 -RLISRM-HMGCEPDRASYNIMVDAYGRA 331
+++ M GC+P+ ++NI+++ Y +A
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKA 416
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 96 WDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED 155
WDD + ++ + +K +P V+ V LI+++ ++ ++AE + E++ P
Sbjct: 314 WDDGAKL-LRDMIKRKINPNVVTFSV---LIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L+ +C L+KA + M G P+ +N I+G K +E+F++M
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
T TY +I + + K +A +LF EM S K PNI TY L++ G
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASYNIM 324
E+A EIFE+++ + +E D+ YN ++ +A+ L + + G +P +YNIM
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 325 VDAYGRAG 332
+ + G
Sbjct: 550 IGGLCKKG 557
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L++ +C G L A+ +F+EM +PP+ V Y +DGL G +KA+EIF+++
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ + Y ++I+ ASK A LF + KP + TY ++ ++G
Sbjct: 500 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 559
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
EAE +F +++ G PD + YN L+ A+
Sbjct: 560 SEAELLFRKMEEDGHAPDGWTYNILIRAH 588
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY +L+ +C +G + + R+M K + P+ V ++ ID +K G ++A E+ + M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
P T TYT +I+ + K + A ++ + M S C PNI T+ L+N + +
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRASYNIM 324
++ E+F ++ G+ D YN L++ + + ++++ E P+ +Y I+
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKIL 479
Query: 325 VDAYGRAGLHE 335
+D G E
Sbjct: 480 LDGLCDNGESE 490
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 11/187 (5%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y++++ C G L+ A +F EM G+ + + YN I G G ++ + M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
+ P+ T++++I+ + K K A +L EM P+ TYT+L++ F +E +
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRASYNIMV 325
+A ++ + + G +P++ +N L+ Y +R+ G E D +YN ++
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 326 DAYGRAG 332
+ G
Sbjct: 446 QGFCELG 452
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T++ L+ C+ G + +A + M + G P + N+ ++GL G +A+ +
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+M CQP+ TY ++N+ K+ ++ +A++L +M K + Y+ +++ +
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRAS 320
G + A +F +++ GI ++ YN L+ + R G + P+ +
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335
Query: 321 YNIMVDAYGRAG 332
+++++D++ + G
Sbjct: 336 FSVLIDSFVKEG 347
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
T ++++ +C L A + ++ K G P+ + +++ I+GL G +A+E+ RM
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+P T ++N + K A+ L ++M + C+PN TY ++N + G
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMHM-GCEPDRASYNIM 324
A E+ +++ I+ D Y+ +++ A+ L + M M G + +YNI+
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 304
Query: 325 VDAYGRAG 332
+ + AG
Sbjct: 305 IGGFCNAG 312
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 171 EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230
+ A +FR+M P+ + ++ + K + + ++M+ + T ++M
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129
Query: 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290
IN + + K +A ++ +PN T++ L+N EG EA E+ +++ G
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189
Query: 291 EPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+PD+ N L+ EA LI +M GC+P+ +Y +++ ++G
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY +++ C G L +AE +FR+M + G P YN I L G+ K+V++
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600
Query: 212 FQRMKRDCCQPSTETYTLMINLY--GKASKSFMAL 244
+ +KR T ++I++ G+ KSF+ +
Sbjct: 601 IEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDM 635
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 16/244 (6%)
Query: 97 DDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDT 156
DD +N+ V+L +++ P + + +L+ + A+ + E+LD +P
Sbjct: 432 DDAVNMKVKL-IDRGVSP---DAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYV 487
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
YA L+ + SG ++A VF + G+ V +N+ I G + G +A+ RM
Sbjct: 488 YATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMN 547
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
+ P TY+ +I+ Y K A+K+F M +KCKPN+ TYT+L+N F +G +
Sbjct: 548 EEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFK 607
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEA------------YRLISRMHMGCEPDRASYNIM 324
AEE F+++Q + P+V Y L+ + Y M C P+ ++N +
Sbjct: 608 MAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCL 667
Query: 325 VDAY 328
+ +
Sbjct: 668 LQGF 671
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 151 IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210
IP +YA L++AYC S + A + +M + G P V Y I GL+ G+ AV
Sbjct: 377 IPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVN 436
Query: 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270
+ ++ P Y ++++ K + A LF+EM P+ Y L++ F
Sbjct: 437 MKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFI 496
Query: 271 REGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDRA 319
R G +EA ++F G++ DV +NA++ EA ++RM+ PD+
Sbjct: 497 RSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKF 556
Query: 320 SYNIMVDAY 328
+Y+ ++D Y
Sbjct: 557 TYSTIIDGY 565
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
+I Y + + A + EL +PT +T+ ++ +C G ++ + E+++ G
Sbjct: 246 IIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG 305
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L S N+ ID + G E + + C+P TY ++IN K K +A+
Sbjct: 306 LRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAV 365
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+E PN +Y L+ A+ + + A ++ Q+ G +PD+ Y L+
Sbjct: 366 GFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHG- 424
Query: 305 RLISRMHM-------------GCEPDRASYNIMVDAYGRAG 332
L+ HM G PD A YN+++ + G
Sbjct: 425 -LVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTG 464
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+AY + + A L++ + C P TY +L+ +SG ++ A + ++ G
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P A +YN + GL K G A +F M P Y +I+ + ++ A
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR 505
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
K+F+ K ++ + A++ F R G+ +EA ++ + PD + Y+ +++ Y
Sbjct: 506 KVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGY 565
Query: 305 RLISRMHMG-----------CEPDRASYNIMVDAY 328
M C+P+ +Y +++ +
Sbjct: 566 VKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGF 600
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 11/194 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
CIP Y ++ YC G +E A VF+E++ G P+ + + I+G K G+ +
Sbjct: 236 CIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASD 295
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+ +K + S +I+ + + + ++ CKP++ TY L+N
Sbjct: 296 RLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRL 355
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-----------RLISRMHMGCEPDR 318
+EG E A ++ G+ P+ +Y L++AY L+ GC+PD
Sbjct: 356 CKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDI 415
Query: 319 ASYNIMVDAYGRAG 332
+Y I++ +G
Sbjct: 416 VTYGILIHGLVVSG 429
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 50/192 (26%)
Query: 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219
++K +C SG+L++A A M + L P Y++ IDG +K + A++IF+ M+++
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585
Query: 220 CQPSTETYTLMINLYGKASKSFMALKLFNEMR---------------------------- 251
C+P+ TYT +IN + MA + F EM+
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKA 645
Query: 252 --------SHKCKPNICTYTALVNAFARE--------------GLCEEAEEIFEQLQGAG 289
++KC PN T+ L+ F ++ G E F +++ G
Sbjct: 646 VYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDG 705
Query: 290 IEPDVYAYNALM 301
AYN+ +
Sbjct: 706 WSDHAAAYNSAL 717
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 155 DTYA--LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212
D Y+ +L+K C G +E + G P+ V YN+ I G K G+ + A +F
Sbjct: 204 DNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVF 263
Query: 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+ +K P+ ET+ MIN + K + +L +E++ + ++ +++A R
Sbjct: 264 KELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRH 323
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM-----EAYRLISRMHM------GCEPDRASY 321
G + E + +PDV YN L+ E + ++ + G P+ SY
Sbjct: 324 GYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSY 383
Query: 322 NIMVDAYGRA 331
++ AY ++
Sbjct: 384 APLIQAYCKS 393
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 125 LIEAYGQKSLHKKAEFTY---LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181
++ AY + KA Y +EL DS +P LL S L A V+ EM
Sbjct: 140 VLHAYAESGSLSKAVEIYDYVVELYDS--VPDVIACNSLLSLLVKSRRLGDARKVYDEMC 197
Query: 182 KYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR----DCCQPSTETYTLMINLYGKA 237
G S Y++ I L+KG + VE+ +++ C P+ Y +I Y K
Sbjct: 198 DRG--DSVDNYSTCI--LVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKL 253
Query: 238 SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAY 297
A +F E++ P + T+ ++N F +EG ++ + +++ G+ V+
Sbjct: 254 GDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFL 313
Query: 298 NALMEA-----YRLISRMHMG------CEPDRASYNIMVDAYGRAGLHE 335
N +++A Y++ +G C+PD A+YNI+++ + G E
Sbjct: 314 NNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKE 362
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 11/202 (5%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
Y+E+LD+ + +L+ +C G + A+ VF E+ K L P+ V +N+ I+G K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK 287
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
GN + + +M++ +P TY+ +IN K +K A LF+EM PN
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVI 347
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRM- 310
+T L++ +R G + +E ++++ G++PD+ YN L+ + ++ M
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 311 HMGCEPDRASYNIMVDAYGRAG 332
G PD+ +Y ++D + R G
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGG 429
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
SR P TY+ L+ A C ++ A +F EM K GL P+ V++ + I G + G
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDL 363
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
E +Q+M QP Y ++N + K A + + M +P+ TYT L++
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL----------MEAYRLISRM-HMGCEP 316
F R G E A EI +++ GIE D ++AL ++A R + M G +P
Sbjct: 424 GFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP 483
Query: 317 DRASYNIMVDAYGRAG 332
D +Y +M+DA+ + G
Sbjct: 484 DDVTYTMMMDAFCKKG 499
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P + TY L+ +C G +E A + +EM + G+ V +++ + G+ K G A
Sbjct: 413 PDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERA 472
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ M R +P TYT+M++ + K + KL EM+S P++ TY L+N +
Sbjct: 473 LREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCK 532
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--------RLISRMHMGCEPDRASYNI 323
G + A+ + + + G+ PD YN L+E + R I + +G D ASY
Sbjct: 533 LGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKS 592
Query: 324 MVDAYGRA 331
+V+ RA
Sbjct: 593 IVNELDRA 600
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 136/316 (43%), Gaps = 31/316 (9%)
Query: 45 GKGWKYGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFD-----SLPPTHATWDDL 99
G W + +D FP+ ++ +E + + FD SL PT +++ L
Sbjct: 222 GTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL 281
Query: 100 IN-------VSVQLRLNKKWD-----PIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLD 147
IN + RL + + P V LI A +++ A + E+
Sbjct: 282 INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA---LINALCKENKMDGAHGLFDEMCK 338
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
IP + + L+ + +G ++ + +++M GL P V+YN+ ++G K G+
Sbjct: 339 RGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVA 398
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
A I M R +P TYT +I+ + + AL++ EM + + + ++ALV
Sbjct: 399 ARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVC 458
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA----------YRLISRMHM-GCEP 316
+EG +AE ++ AGI+PD Y +M+A ++L+ M G P
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Query: 317 DRASYNIMVDAYGRAG 332
+YN++++ + G
Sbjct: 519 SVVTYNVLLNGLCKLG 534
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 141 TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200
+Y ++L P Y L+ +C +G L A + M + GL P + Y + IDG
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC 426
Query: 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260
+GG+ + A+EI + M ++ + ++ ++ K + A + EM KP+
Sbjct: 427 RGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDV 486
Query: 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM---------- 310
TYT +++AF ++G + ++ +++Q G P V YN L+ + +M
Sbjct: 487 TYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546
Query: 311 -HMGCEPDRASYNIMVDAYGR 330
++G PD +YN +++ + R
Sbjct: 547 LNIGVVPDDITYNTLLEGHHR 567
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
AE E+L + P + TY +++ A+C G + + +EM+ G PS V YN ++
Sbjct: 469 AERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLN 528
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
GL K G + A + M P TY ++ + + + S K + +
Sbjct: 529 GLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSS---KRYIQKPEIGIVA 585
Query: 258 NICTYTALVNAFAR 271
++ +Y ++VN R
Sbjct: 586 DLASYKSIVNELDR 599
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 134 LHKKAEFTYL-ELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS 188
L KK + T + +L+D+ C+P E TY L+ C+ G L+KA ++ M P+
Sbjct: 267 LCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPN 326
Query: 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFN 248
V Y + I+GL+K AV + M+ + Y+++I+ K K+ A+ L+
Sbjct: 327 DVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWR 386
Query: 249 EMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM------- 301
+M CKPNI Y+ LV+ REG EA+EI ++ +G P+ Y Y++LM
Sbjct: 387 KMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTG 446
Query: 302 ---EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
EA ++ M GC ++ Y++++D G
Sbjct: 447 LCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVG 481
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183
L+I+A + +A + + + +C+P TY L+ C +++A + EM+
Sbjct: 192 LVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE 251
Query: 184 GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN---LYGKASKS 240
G PS V+YN IDGL K G+ + ++ M C P+ TY +I+ L GK K
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDK- 310
Query: 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300
A+ L M S KC PN TY L+N ++ +A + ++ G + + Y+ L
Sbjct: 311 --AVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVL 368
Query: 301 M----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+ EA L +M GC+P+ Y+++VD R G
Sbjct: 369 ISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREG 411
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 16/235 (6%)
Query: 107 RLNKKWDPIVLMSCVSI-----LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLL 161
R+ K D + L CV LI K KA ++ S+CIP + TY L+
Sbjct: 275 RVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLI 334
Query: 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221
A + M + G + +Y+ I GL K G ++A+ ++++M C+
Sbjct: 335 NGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394
Query: 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEI 281
P+ Y+++++ + K A ++ N M + C PN TY++L+ F + GLCEEA ++
Sbjct: 395 PNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454
Query: 282 FEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMV 325
++++ G + + Y+ L+ EA + S+M +G +PD +Y+ ++
Sbjct: 455 WKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 120/262 (45%), Gaps = 27/262 (10%)
Query: 91 PTHATWDDLINVSVQLRLNKKWDPIVLMSC-----------VSILLIEAYGQKSLHKKAE 139
P T+ LIN V+ R + D + L+S + +LI ++ ++A
Sbjct: 325 PNDVTYGTLINGLVKQR--RATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAM 382
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
+ ++ + C P Y++L+ C G +A+ + M G P+A Y+S + G
Sbjct: 383 SLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGF 442
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259
K G ++AV++++ M + C + Y+++I+ + A+ ++++M + KP+
Sbjct: 443 FKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDT 502
Query: 260 CTYTALVNAFAREGLCEEAEEIFEQL---QGAGIEPDVYAYNALMEAYRL---ISR---- 309
Y++++ G + A +++ ++ + +PDV YN L++ + ISR
Sbjct: 503 VAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDL 562
Query: 310 ----MHMGCEPDRASYNIMVDA 327
+ GC+PD + N ++
Sbjct: 563 LNSMLDRGCDPDVITCNTFLNT 584
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P ++ L++KA C +++A VFR M + P Y + +DGL K +AV +
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M+ + C PS Y ++I+ K KL + M C PN TY L++
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
+G ++A + E++ + P+ Y L+ +A RL+S M G ++
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364
Query: 321 YNIMVDAYGRAGLHE 335
Y++++ + G E
Sbjct: 365 YSVLISGLFKEGKAE 379
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%)
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDS-RCIPTEDTYALLLKAYCMSGL----LEKAEAVF 177
I++ AYG+ L KA + ++D RC + ++ +L GL LE + V
Sbjct: 116 IVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVV 175
Query: 178 REMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA 237
+ P+ + +N I L K +A+E+F+ M C P TY +++ K
Sbjct: 176 NSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKE 235
Query: 238 SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAY 297
+ A+ L +EM+S C P+ Y L++ ++G ++ + + G P+ Y
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTY 295
Query: 298 NALM----------EAYRLISRM-HMGCEPDRASYNIMVDA 327
N L+ +A L+ RM C P+ +Y +++
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLING 336
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 173 AEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231
+E +F+ K G +S I+ G+ ++ R++ + ++ ++
Sbjct: 60 SEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVF 119
Query: 232 NLYGKASKSFMALKLFNEMRSH-KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290
YGKA A+ LF+ M +CK ++ ++ +++N EGL E ++
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYD------- 172
Query: 291 EPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDA 327
Y + S M+M P+ S+N+++ A
Sbjct: 173 -------------YVVNSNMNMNISPNGLSFNLVIKA 196
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 11/200 (5%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
+++ C P TY L+ C +E+A + R + G+ P +NS I GL
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263
N + A+E+F+ M+ C+P TY ++I+ K AL + +M C ++ TY
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM- 312
L++ F + EAEEIF++++ G+ + YN L+ +A +L+ +M M
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 313 GCEPDRASYNIMVDAYGRAG 332
G +PD+ +YN ++ + R G
Sbjct: 535 GQKPDKYTYNSLLTHFCRGG 554
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 159 LLLKAYCMSGLLEKAEAVFREM-RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217
+++ +C G +E A +EM + G P +N+ ++GL K G+ + A+EI M +
Sbjct: 264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEE 277
+ P TY +I+ K + A+++ ++M + C PN TY L++ +E EE
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 278 AEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRMH-MGCEPDRASYNIMVD 326
A E+ L GI PDV +N+L++ A L M GCEPD +YN+++D
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443
Query: 327 AYGRAG 332
+ G
Sbjct: 444 SLCSKG 449
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P + T+ L+ C +G ++ A + M + G P YNS I GL K G ++AVE+
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+M C P+T TY +I+ K ++ A +L + S P++CT+ +L+
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI----- 407
Query: 272 EGLC-----EEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHM-GCE 315
+GLC A E+FE+++ G EPD + YN L+ EA ++ +M + GC
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 316 PDRASYNIMVDAYGRA 331
+YN ++D + +A
Sbjct: 468 RSVITYNTLIDGFCKA 483
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%)
Query: 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS 194
H+ A + E+ C P E TY +L+ + C G L++A + ++M G S + YN+
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475
Query: 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK 254
IDG K ++A EIF M+ ++ TY +I+ K+ + A +L ++M
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301
KP+ TY +L+ F R G ++A +I + + G EPD+ Y L+
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207
S C + TY L+ +C + +AE +F EM +G+ ++V YN+ IDGL K +
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVN 267
A ++ +M + +P TY ++ + + A + M S+ C+P+I TY L++
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583
Query: 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMHMGCE-- 315
+ G E A ++ +Q GI +AYN ++ EA L M E
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP 643
Query: 316 PDRASYNIMVDAYGRAGLHEGKCSYSLVELSVKHY 350
PD SY I+ G + LVEL K +
Sbjct: 644 PDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ +L+KA C + L A + +M YGL P + + + G ++ G+ A+ I
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFA 270
++M C S + ++++ + K + AL EM + P+ T+ LVN
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 271 REGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRA 319
+ G + A EI + + G +PDVY YN+++ EA ++ +M C P+
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 320 SYNIMV 325
+YN ++
Sbjct: 367 TYNTLI 372
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 13/223 (5%)
Query: 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMR 181
++LIE+Y Q L + ++D + P Y +L L+ E +M
Sbjct: 122 LILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMS 181
Query: 182 KYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241
+G+ P +N I L + + A+ + + M P +T+T ++ Y +
Sbjct: 182 VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLD 241
Query: 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYAYNAL 300
AL++ +M C + + +V+ F +EG E+A +++ G PD Y +N L
Sbjct: 242 GALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTL 301
Query: 301 M----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+ A ++ M G +PD +YN ++ + G
Sbjct: 302 VNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLG 344
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 183 YGLPPSAVVYNS---YIDGLLKGGNPQKAVEIFQRM-KRDCCQPSTETYTLMINLYGKAS 238
+ P SA + ++ +D L + A+ +F K+ P Y ++ G++
Sbjct: 38 FASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSG 97
Query: 239 KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE-QLQGAGIEPDVYAY 297
K+ +M+S +C+ T+ L+ ++A+ L +E + + + G++PD + Y
Sbjct: 98 SFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFY 157
Query: 298 NALM------EAYRLISRMHM-----GCEPDRASYNIMVDAYGRA 331
N ++ + +L+ H G +PD +++N+++ A RA
Sbjct: 158 NRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRA 202
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195
KKA + + C P TY L+ C +G +E A + R ++ G+ + YN
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPV 616
Query: 196 IDGLLKGGNPQKAVEIFQRM 215
I GL + +A+ +F+ M
Sbjct: 617 IQGLFRKRKTTEAINLFREM 636
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ + C G + A V + M+K G+ P V YNS I L G + I
Sbjct: 182 PNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARI 241
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M R P T++ +I++YGK + A K +NEM PNI TY +L+N
Sbjct: 242 LSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCI 301
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRAS 320
GL +EA+++ L G P+ YN L+ Y R+ M + G + D +
Sbjct: 302 HGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFT 361
Query: 321 YNIMVDAYGRAG 332
YN + Y +AG
Sbjct: 362 YNTLYQGYCQAG 373
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ YG++ +A+ Y E++ P TY L+ C+ GLL++A+ V + G
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+AV YN+ I+G K ++I M RD T TY + Y +A K A
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA- 303
K+ M S P++ T+ L++ G +A E LQ + + YN +++
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGL 439
Query: 304 ----------YRLISRMHMGCEPDRASYNIMVDAYGRAGL 333
Y S G PD +Y M+ R L
Sbjct: 440 CKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRL 479
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 106/219 (48%), Gaps = 13/219 (5%)
Query: 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201
+ ++ +S +P+ ++ LL A E ++FR + G+ + + ID +
Sbjct: 67 FCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCR 126
Query: 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261
A+ +M + +PS T+ ++N + ++ + A+ L +++ +PN+
Sbjct: 127 CARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVI 186
Query: 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLIS-RM 310
Y ++++ +G A ++ + ++ GI PDV YN+L+ + R++S M
Sbjct: 187 YNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMM 246
Query: 311 HMGCEPDRASYNIMVDAYGRAG-LHEGKCSYS-LVELSV 347
MG PD +++ ++D YG+ G L E K Y+ +++ SV
Sbjct: 247 RMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T++ L+ Y G L +A+ + EM + + P+ V YNS I+GL G +A ++
Sbjct: 252 PDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKV 311
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ P+ TY +IN Y KA + +K+ M + TY L + +
Sbjct: 312 LNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQ 371
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303
G AE++ ++ G+ PD+Y +N L++
Sbjct: 372 AGKFSAAEKVLGRMVSCGVHPDMYTFNILLDG 403
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 140 FTYLELLDSRCIPTEDTYAL--LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
F +LE+L + D Y+ L+ +C L A + +M K G PS V + S ++
Sbjct: 102 FRHLEMLG----ISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVN 157
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
G +A+ + ++ +P+ Y +I+ + + AL + M+ +P
Sbjct: 158 GFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRP 217
Query: 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
++ TY +L+ G + I + GI PDV ++AL++ Y
Sbjct: 218 DVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202
L + +SR Y L++ S A +F +M + PS V ++ + + K
Sbjct: 33 LRICNSRAFSGRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKL 92
Query: 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262
+ + +F+ ++ ++T +I+ + + ++ +AL +M +P+I T+
Sbjct: 93 NKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTF 152
Query: 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME----------AYRLISRM-H 311
+LVN F EA + +Q+ G G EP+V YN +++ A ++ M
Sbjct: 153 GSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKK 212
Query: 312 MGCEPDRASYNIMVDAYGRAG 332
MG PD +YN ++ +G
Sbjct: 213 MGIRPDVVTYNSLITRLFHSG 233
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L + YC +G AE V M G+ P +N +DGL G KA+ + +
Sbjct: 361 TYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDL 420
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ TY ++I KA K A LF + P++ TY ++ R+ L
Sbjct: 421 QKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLW 480
Query: 276 EEAEEIFEQLQ 286
EA E++ ++Q
Sbjct: 481 REAHELYRKMQ 491
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y ++ + C +G + A ++F +M YG+ P V+Y S ++GL G + A +
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSL 234
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ M + +P T+ +I+ + K K A +L+NEM PNI TYT+L+N F
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM 294
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
EG +EA ++F ++ G PDV AY +L+ +A ++ M G + +
Sbjct: 295 EGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTIT 354
Query: 321 YNIMVDAYGRAG 332
Y ++ +G+ G
Sbjct: 355 YTTLIQGFGQVG 366
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 35/292 (11%)
Query: 67 QQILRFVQREVDSNTIWDAF----DSLP-PTHATWDDLINVSVQLRLNKKWDPIV----- 116
++ILR + N D F +S P P+ + L+NV ++ KK+D ++
Sbjct: 41 REILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKM---KKFDVVINLCDH 97
Query: 117 ---------LMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS 167
L +C LL+ + Q S A +++ P T+ L+ +C+
Sbjct: 98 LQIMGVSHDLYTCN--LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLG 155
Query: 168 GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY 227
+E+A ++ +M + G+ P V+Y + ID L K G+ A+ +F +M+ +P Y
Sbjct: 156 NRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMY 215
Query: 228 TLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287
T ++N + + A L M K KP++ T+ AL++AF +EG +AEE++ ++
Sbjct: 216 TSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR 275
Query: 288 AGIEPDVYAYNALM----------EAYRLISRMHM-GCEPDRASYNIMVDAY 328
I P+++ Y +L+ EA ++ M GC PD +Y +++ +
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 3/182 (1%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+A+ ++ AE Y E++ P TY L+ +CM G +++A +F M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P V Y S I+G K A++IF M + +T TYT +I +G+ K +A
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA---GIEPDVYAYNALM 301
++F+ M S PNI TY L++ G ++A IFE +Q G+ P+++ YN L+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432
Query: 302 EA 303
Sbjct: 433 HG 434
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T+ L+ A+ G AE ++ EM + + P+ Y S I+G G +A ++
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F M+ C P YT +IN + K K A+K+F EM N TYT L+ F +
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQ 364
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
G A+E+F + G+ P++ YN L+
Sbjct: 365 VGKPNVAQEVFSHMVSRGVPPNIRTYNVLLH 395
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y L+ C SG A+++ R M K + P + +N+ ID +K G A E+
Sbjct: 210 PDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEEL 269
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+ M R P+ TYT +IN + A ++F M + C P++ YT+L+N F +
Sbjct: 270 YNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCK 329
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR--------MHM---GCEPDRAS 320
++A +IF ++ G+ + Y L++ + + + HM G P+ +
Sbjct: 330 CKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRT 389
Query: 321 YNIMV 325
YN+++
Sbjct: 390 YNVLL 394
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY- 183
LI+ +GQ A+ + ++ P TY +LL C +G ++KA +F +M+K
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 184 --GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241
G+ P+ YN + GL G +KA+ +F+ M++ TYT++I KA K
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290
A+ LF + S KPN+ TYT +++ REGL EA +F +++ G+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 116/272 (42%), Gaps = 24/272 (8%)
Query: 89 LPPTHATWDDLINVSVQ----LRLNKKWDPIVLMSCVSIL-----LIEAYGQKSLHKKAE 139
+ P T++ LI+ V+ L + ++ ++ MS + LI + + +A
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEAR 302
Query: 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199
+ + C P Y L+ +C ++ A +F EM + GL + + Y + I G
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362
Query: 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK---CK 256
+ G P A E+F M P+ TY ++++ K AL +F +M+ +
Sbjct: 363 GQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVA 422
Query: 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIE----PDVYAYNALMEAYRLISRMHM 312
PNI TY L++ G E+A +FE ++ ++ + +A ++ + +++
Sbjct: 423 PNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNL 482
Query: 313 GC-------EPDRASYNIMVDAYGRAGL-HEG 336
C +P+ +Y M+ R GL HE
Sbjct: 483 FCSLPSKGVKPNVVTYTTMISGLFREGLKHEA 514
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 16/224 (7%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++++ + L ++A E+ Y L+ AY S +E+ E +F EMR G
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKG 409
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK-SFMA 243
L PSA YN +D + P + + M+ +P+ ++YT +I+ YG+ K S MA
Sbjct: 410 LKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMA 469
Query: 244 LKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA---- 299
F M+ KP+ +YTAL++A++ G E+A FE++ GI+P V Y +
Sbjct: 470 ADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDA 529
Query: 300 ---------LMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLH 334
LME ++L+ R + + R +YN ++D + + GL+
Sbjct: 530 FRRSGDTGKLMEIWKLMLREKI--KGTRITYNTLLDGFAKQGLY 571
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212
++D + L+K++C GL E+A + EM K G+ + +VYN+ +D K + ++ +F
Sbjct: 343 SQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLF 402
Query: 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR- 271
M+ +PS TY ++++ Y + + + L EM +PN+ +YT L++A+ R
Sbjct: 403 TEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRT 462
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH------------MGCEPDRA 319
+ + + A + F +++ G++P ++Y AL+ AY +S H G +P
Sbjct: 463 KKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYS-VSGWHEKAYASFEEMCKEGIKPSVE 521
Query: 320 SYNIMVDAYGRAG 332
+Y ++DA+ R+G
Sbjct: 522 TYTSVLDAFRRSG 534
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 12/219 (5%)
Query: 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS-GLLEKAEAVFREMRK 182
+L++AY ++ E E+ D P +Y L+ AY + + + A F M+K
Sbjct: 419 ILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKK 478
Query: 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242
GL PS+ Y + I G +KA F+ M ++ +PS ETYT +++ + ++ +
Sbjct: 479 VGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGK 538
Query: 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302
++++ M K K TY L++ FA++GL EA ++ + G++P V YN LM
Sbjct: 539 LMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMN 598
Query: 303 AY----------RLISRM-HMGCEPDRASYNIMVDAYGR 330
AY +L+ M + +PD +Y+ M+ A+ R
Sbjct: 599 AYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 176 VFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235
+F +M + G+ S V+ + G ++A+ I M++ + +T Y +++ Y
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390
Query: 236 KASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVY 295
K++ LF EMR KP+ TY L++A+AR + E + +++ G+EP+V
Sbjct: 391 KSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450
Query: 296 AYNALMEAYRLISRM------------HMGCEPDRASYNIMVDAYGRAGLHE 335
+Y L+ AY +M +G +P SY ++ AY +G HE
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHE 502
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y LLL +S L +K E FR++R +YN+ I GL A E+++ M
Sbjct: 256 YILLL----LSNLPDKEE--FRDVR---------LYNAAISGLSASQRYDDAWEVYEAMD 300
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMAL-KLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
+ P T ++I KA +S + ++F +M K + + LV +F EGL
Sbjct: 301 KINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLK 360
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMH-MGCEPDRASYNIM 324
EEA I +++ GI + YN LM+AY L + M G +P A+YNI+
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNIL 420
Query: 325 VDAYGR 330
+DAY R
Sbjct: 421 MDAYAR 426
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 11/219 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ Y + K AE E+ P E TY+LL+ AY +G E A V +EM
Sbjct: 345 LLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGD 404
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P++ V++ + G G QK ++ + MK +P + Y ++I+ +GK + A+
Sbjct: 405 VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 464
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
F+ M S +P+ T+ L++ + G AEE+FE ++ G P YN ++ +Y
Sbjct: 465 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524
Query: 305 ----------RLISRMH-MGCEPDRASYNIMVDAYGRAG 332
RL+ +M G P+ ++ +VD YG++G
Sbjct: 525 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSG 563
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P Y +++ + L+ A F M G+ P V +N+ ID K G A E+
Sbjct: 442 PDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEM 501
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F+ M+R C P TY +MIN YG + +L +M+S PN+ T+T LV+ + +
Sbjct: 502 FEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGK 561
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--RLISRMHM---------GCEPDRAS 320
G +A E E+++ G++P YNAL+ AY R +S + G +P +
Sbjct: 562 SGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621
Query: 321 YNIMVDAYG 329
N +++A+G
Sbjct: 622 LNSLINAFG 630
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 19/225 (8%)
Query: 119 SCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFR 178
+ VSI+ A ++L +A F EL S P Y LLK Y +G L+ AE++
Sbjct: 306 TLVSIISALADSGRTLEAEALFE--ELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVS 363
Query: 179 EMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY---G 235
EM K G+ P Y+ ID + G + A + + M+ QP++ ++ ++ + G
Sbjct: 364 EMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRG 423
Query: 236 KASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVY 295
+ K+F LK EM+S KP+ Y +++ F + + A F+++ GIEPD
Sbjct: 424 EWQKTFQVLK---EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 480
Query: 296 AYNALMEAY----RLISRMHM-------GCEPDRASYNIMVDAYG 329
+N L++ + R I M GC P +YNIM+++YG
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYG 525
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
T ++ A SG +AEA+F E+R+ G+ P YN+ + G +K G + A + M
Sbjct: 306 TLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ P TY+L+I+ Y A + A + EM + +PN ++ L+ F G
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 425
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAY--------------RLISRMHMGCEPDRASY 321
++ ++ ++++ G++PD YN +++ + R++S G EPDR ++
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE---GIEPDRVTW 482
Query: 322 NIMVDAYGRAGLH 334
N ++D + + G H
Sbjct: 483 NTLIDCHCKHGRH 495
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 11/214 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + + H AE + + C+P TY +++ +Y + + + +M+ G
Sbjct: 485 LIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
+ P+ V + + +D K G A+E + MK +PS+ Y +IN Y + S A+
Sbjct: 545 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
F M S KP++ +L+NAF + EA + + ++ G++PDV Y LM+A
Sbjct: 605 NAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKAL 664
Query: 305 RLISRMHM-----------GCEPDRASYNIMVDA 327
+ + GC+PDR + +++ A
Sbjct: 665 IRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 9/228 (3%)
Query: 87 DSLPPTHATWDDLINVSVQ----LRLNKKWDPIVLMSCVSI-----LLIEAYGQKSLHKK 137
+ + P TW+ LI+ + + + ++ + C+ ++I +YG +
Sbjct: 473 EGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDD 532
Query: 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197
+ ++ +P T+ L+ Y SG A EM+ GL PS+ +YN+ I+
Sbjct: 533 MKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALIN 592
Query: 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257
+ G ++AV F+ M D +PS +IN +G+ + A + M+ + KP
Sbjct: 593 AYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKP 652
Query: 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305
++ TYT L+ A R ++ ++E++ +G +PD A + L A R
Sbjct: 653 DVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALR 700
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204
LL + T TY L+ A + +EKA + +MR+ G V Y+ I L +
Sbjct: 188 LLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNK 247
Query: 205 PQKA--VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262
+ +++ ++RD + + +I + K+ AL+L ++ T
Sbjct: 248 IDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATL 307
Query: 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLISRMH- 311
++++A A G EAE +FE+L+ +GI+P AYNAL++ Y ++S M
Sbjct: 308 VSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK 367
Query: 312 MGCEPDRASYNIMVDAYGRAGLHE 335
G PD +Y++++DAY AG E
Sbjct: 368 RGVSPDEHTYSLLIDAYVNAGRWE 391
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219
++ + SG KA + + GL S I L G +A +F+ +++
Sbjct: 275 IIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSG 334
Query: 220 CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279
+P T Y ++ Y K A + +EM P+ TY+ L++A+ G E A
Sbjct: 335 IKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESAR 394
Query: 280 EIFEQLQGAGIEPDVYAYNALMEAYR-----------LISRMHMGCEPDRASYNIMVDAY 328
+ ++++ ++P+ + ++ L+ +R L +G +PDR YN+++D +
Sbjct: 395 IVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTF 454
Query: 329 GR 330
G+
Sbjct: 455 GK 456
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P E TY +LK C SG A + R+M + + AV Y+ IDGL K G+ A +
Sbjct: 210 PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNL 269
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
F M+ + YT +I + A + KL +M K P++ ++AL++ F +
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----RLISRMHM-------GCEPDRAS 320
EG EAEE+ +++ GI PD Y +L++ + +L HM GC P+ +
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT 389
Query: 321 YNIMVDAYGRAGL 333
+NI+++ Y +A L
Sbjct: 390 FNILINGYCKANL 402
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 11/219 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + ++ ++AE + E++ P TY L+ +C L+KA + M G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
P+ +N I+G K +E+F++M T TY +I + + K +A
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--- 301
+LF EM S + +P+I +Y L++ G E+A EIFE+++ + +E D+ YN ++
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 302 -------EAYRLISRMHM-GCEPDRASYNIMVDAYGRAG 332
+A+ L + + G +PD +YNIM+ + G
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216
Y L++ +C +G + + R+M K + P V +++ ID +K G ++A E+ + M
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344
Query: 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276
+ P T TYT +I+ + K ++ A + + M S C PNI T+ L+N + + L +
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404
Query: 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRASYNIMV 325
+ E+F ++ G+ D YN L++ + + ++ + E PD SY I++
Sbjct: 405 DGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464
Query: 326 DA 327
D
Sbjct: 465 DG 466
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 8/188 (4%)
Query: 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215
TY L++ +C G LE A+ +F+EM + P V Y +DGL G P+KA+EIF+++
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483
Query: 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275
++ + Y ++I+ ASK A LF + KP++ TY ++ ++G
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543
Query: 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHE 335
EA+ +F +++ G P+ YN L+ R H+G E D +++ R G
Sbjct: 544 SEADLLFRKMEEDGHSPNGCTYNILI-------RAHLG-EGDATKSAKLIEEIKRCGFSV 595
Query: 336 GKCSYSLV 343
+ +V
Sbjct: 596 DASTVKMV 603
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P T++ L+ C+ G + +A + M + G P+ + N+ ++GL G AV +
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
RM QP+ TY ++ + K+ ++ +A++L +M K K + Y+ +++ +
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-----------PDRAS 320
+G + A +F +++ G + D+ Y L+ + R G + PD +
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319
Query: 321 YNIMVDAYGRAG 332
++ ++D + + G
Sbjct: 320 FSALIDCFVKEG 331
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P TY +++ C G L +A+ +FR+M + G P+ YN I L G+ K+ ++
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
Query: 212 FQRMKRDCCQPSTETYTLMINLY--GKASKSFMAL 244
+ +KR T +++++ G+ KSF+ +
Sbjct: 585 IEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDM 619
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 171 EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230
+ A +F+EM + P + ++ + + +++ ++M+ + T ++M
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113
Query: 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290
IN + K +A ++ +P+ T++ L+N EG EA E+ +++ G
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173
Query: 291 EPDVYAYNALM----------EAYRLISRM-HMGCEPDRASYNIMVDAYGRAG 332
+P + NAL+ +A LI RM G +P+ +Y ++ ++G
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSG 226
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213
E TY L+K YC G +A + EM ++GL PS + Y S I + K GN +A+E
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369
Query: 214 RMKRDCCQPSTETYTLMINLYGKASKSFM--ALKLFNEMRSHKCKPNICTYTALVNAFAR 271
+M+ P+ TYT +++ G + K +M A ++ EM + P++ TY AL+N
Sbjct: 370 QMRVRGLCPNERTYTTLVD--GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRM-HMGCEPDRAS 320
G E+A + E ++ G+ PDV +Y+ ++ EA R+ M G +PD +
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487
Query: 321 YNIMVDAY 328
Y+ ++ +
Sbjct: 488 YSSLIQGF 495
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Query: 143 LELLDSRCI----PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198
+E LD + P E TY L+ + G + +A V REM G PS V YN+ I+G
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258
G + A+ + + MK P +Y+ +++ + ++ AL++ EM KP+
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Query: 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY----------RLIS 308
TY++L+ F + +EA +++E++ G+ PD + Y AL+ AY +L +
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544
Query: 309 RM-HMGCEPDRASYNIMVDAYGR 330
M G PD +Y+++++ +
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNK 567
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 110/213 (51%), Gaps = 11/213 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
L++ + QK +A E+ D+ P+ TY L+ +C++G +E A AV +M++ G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P V Y++ + G + + +A+ + + M +P T TY+ +I + + ++ A
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM--- 301
L+ EM P+ TYTAL+NA+ EG E+A ++ ++ G+ PDV Y+ L+
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Query: 302 -------EAYRLISRM-HMGCEPDRASYNIMVD 326
EA RL+ ++ + P +Y+ +++
Sbjct: 566 NKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 11/191 (5%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +Y +++ C G +++ V EM + G V YN+ I G K GN +A+ +
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
M R PS TYT +I+ KA A++ ++MR PN TYT LV+ F++
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM-----------HMGCEPDRAS 320
+G EA + ++ G P V YNAL+ + + +M G PD S
Sbjct: 393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452
Query: 321 YNIMVDAYGRA 331
Y+ ++ + R+
Sbjct: 453 YSTVLSGFCRS 463
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ Y ++ +A + E+L P+ TY L+ + C +G + +A +MR G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
L P+ Y + +DG + G +A + + M + PS TY +IN + K A+
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+ +M+ P++ +Y+ +++ F R +EA + ++ GI+PD Y++L++ +
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 305 RLISRMHMGCE-----------PDRASYNIMVDAYGRAG 332
R C+ PD +Y +++AY G
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 11/197 (5%)
Query: 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209
C+P TY L+ YC ++ + R M GL P+ + YN I+GL + G ++
Sbjct: 236 CLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVS 295
Query: 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269
+ M R TY +I Y K AL + EM H P++ TYT+L+++
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355
Query: 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----------EAYRLISRMH-MGCEPDR 318
+ G A E +Q++ G+ P+ Y L+ EAYR++ M+ G P
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Query: 319 ASYNIMVDAYGRAGLHE 335
+YN +++ + G E
Sbjct: 416 VTYNALINGHCVTGKME 432
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 14/251 (5%)
Query: 95 TWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSR-CIPT 153
T DD V L + +D S V L++++Y + SL KA + + L + +P
Sbjct: 110 TLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKA-LSIVHLAQAHGFMPG 168
Query: 154 EDTYALLLKAYCMSGL-LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212
+Y +L A S + AE VF+EM + + P+ YN I G GN A+ +F
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228
Query: 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272
+M+ C P+ TY +I+ Y K K KL M +PN+ +Y ++N RE
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288
Query: 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY--------RLISRMHM---GCEPDRASY 321
G +E + ++ G D YN L++ Y L+ M G P +Y
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348
Query: 322 NIMVDAYGRAG 332
++ + +AG
Sbjct: 349 TSLIHSMCKAG 359
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211
P +Y+ +L +C S +++A V REM + G+ P + Y+S I G + ++A ++
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271
++ M R P TYT +IN Y AL+L NEM P++ TY+ L+N +
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Query: 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALME---------AYRLI--------------- 307
+ EA+ + +L P Y+ L+E LI
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627
Query: 308 --SRMHMGCEPDRASYNIMVDAYGRAG 332
S + +PD +YNIM+ + RAG
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAG 654
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203
E+++ P TY+ L++ +C ++A ++ EM + GLPP Y + I+ G
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534
Query: 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY- 262
+ +KA+++ M P TY+++IN K S++ A +L ++ + P+ TY
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYH 594
Query: 263 --------------TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304
+L+ F +G+ EA+++FE + G +PD AYN ++ +
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 79/208 (37%), Gaps = 50/208 (24%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + ++ K+A Y E+L P E TY L+ AYCM G LEKA + EM + G
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 185 LPPSAVVYNSYIDGL--------------------------------------------- 199
+ P V Y+ I+GL
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVS 610
Query: 200 -LKG----GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK 254
+KG G +A ++F+ M +P Y +MI+ + +A A L+ EM
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 255 CKPNICTYTALVNAFAREGLCEEAEEIF 282
+ T ALV A +EG E +
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVI 698
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 55/134 (41%)
Query: 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184
LI+ + K + +A+ + +L P Y +++ +C +G + KA +++EM K G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244
V + + L K G + + + R C E +++ + + + L
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVL 730
Query: 245 KLFNEMRSHKCKPN 258
+ EM PN
Sbjct: 731 DVLAEMAKDGFLPN 744
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,052,979
Number of Sequences: 539616
Number of extensions: 5237685
Number of successful extensions: 17594
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 11564
Number of HSP's gapped (non-prelim): 3061
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)