Query 045379
Match_columns 352
No_of_seqs 347 out of 2911
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-47 2.9E-52 378.4 33.8 284 62-345 471-781 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.7E-47 1.7E-51 373.0 35.4 285 63-347 437-748 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.5E-46 1.2E-50 362.4 25.0 275 62-344 157-488 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.6E-43 3.4E-48 352.8 27.4 294 40-345 206-652 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.9E-43 8.5E-48 342.4 24.0 288 60-351 120-466 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.5E-42 5.5E-47 344.1 26.3 276 63-346 121-452 (857)
7 PRK11788 tetratricopeptide rep 99.8 1.8E-16 3.9E-21 145.2 30.8 268 70-342 42-342 (389)
8 PRK11788 tetratricopeptide rep 99.8 2.4E-17 5.1E-22 151.0 24.4 270 59-339 65-368 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 2E-15 4.4E-20 152.1 33.4 219 65-288 569-799 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 3.9E-15 8.4E-20 150.0 32.7 271 66-342 502-794 (899)
11 PRK15174 Vi polysaccharide exp 99.6 2E-12 4.3E-17 125.3 32.8 277 59-342 72-376 (656)
12 KOG4422 Uncharacterized conser 99.6 1.6E-12 3.5E-17 112.8 25.2 256 84-344 198-548 (625)
13 KOG4422 Uncharacterized conser 99.5 1.7E-11 3.7E-16 106.6 25.5 222 121-346 209-461 (625)
14 PRK15174 Vi polysaccharide exp 99.5 4.1E-11 8.9E-16 116.2 30.8 270 67-342 46-342 (656)
15 TIGR00990 3a0801s09 mitochondr 99.5 2.7E-10 5.9E-15 110.4 32.5 272 67-342 131-491 (615)
16 PF13429 TPR_15: Tetratricopep 99.5 6.4E-13 1.4E-17 116.0 12.7 245 68-342 13-272 (280)
17 TIGR00990 3a0801s09 mitochondr 99.4 8.5E-10 1.8E-14 107.0 34.0 217 121-342 333-566 (615)
18 PF13041 PPR_2: PPR repeat fam 99.4 3.2E-13 6.9E-18 84.6 6.6 49 222-270 1-49 (50)
19 PF13041 PPR_2: PPR repeat fam 99.4 4.7E-13 1E-17 83.9 6.8 49 152-200 1-49 (50)
20 KOG4626 O-linked N-acetylgluco 99.3 6.5E-10 1.4E-14 101.1 23.3 276 59-342 112-480 (966)
21 PRK11447 cellulose synthase su 99.3 3.3E-09 7.1E-14 109.8 31.7 280 60-345 382-738 (1157)
22 TIGR02521 type_IV_pilW type IV 99.3 2.1E-09 4.5E-14 90.5 24.5 199 63-287 31-231 (234)
23 PF13429 TPR_15: Tetratricopep 99.3 2.3E-11 5.1E-16 106.1 12.4 224 60-287 41-276 (280)
24 TIGR02521 type_IV_pilW type IV 99.3 4.1E-09 9E-14 88.6 25.7 194 121-342 33-227 (234)
25 PRK09782 bacteriophage N4 rece 99.3 5.9E-09 1.3E-13 104.3 30.2 182 130-342 520-701 (987)
26 PRK10747 putative protoheme IX 99.3 3.3E-09 7.1E-14 97.2 26.4 258 76-342 97-385 (398)
27 PRK11447 cellulose synthase su 99.3 3.5E-09 7.5E-14 109.6 29.1 216 66-288 464-700 (1157)
28 KOG1126 DNA-binding cell divis 99.3 4E-10 8.6E-15 103.2 18.8 196 121-349 423-622 (638)
29 PRK10049 pgaA outer membrane p 99.2 5E-08 1.1E-12 96.8 32.8 281 60-342 46-417 (765)
30 KOG1840 Kinesin light chain [C 99.2 2.2E-09 4.8E-14 98.8 21.4 232 55-286 191-477 (508)
31 PRK10049 pgaA outer membrane p 99.2 6.8E-08 1.5E-12 95.8 31.5 278 62-342 82-451 (765)
32 PRK10747 putative protoheme IX 99.2 3.7E-08 8.1E-13 90.2 26.7 215 122-342 121-352 (398)
33 KOG4318 Bicoid mRNA stability 99.2 1.7E-10 3.7E-15 108.5 11.2 196 141-340 12-293 (1088)
34 TIGR00540 hemY_coli hemY prote 99.2 2.8E-08 6.1E-13 91.5 25.9 263 75-342 96-394 (409)
35 PRK09782 bacteriophage N4 rece 99.2 2.2E-08 4.7E-13 100.3 26.7 219 62-288 476-706 (987)
36 PRK14574 hmsH outer membrane p 99.1 4.4E-07 9.5E-12 89.4 33.4 147 196-342 299-474 (822)
37 KOG4626 O-linked N-acetylgluco 99.1 3.6E-09 7.8E-14 96.4 17.2 162 121-288 322-485 (966)
38 KOG1840 Kinesin light chain [C 99.1 6.3E-08 1.4E-12 89.3 24.6 222 121-342 201-474 (508)
39 COG2956 Predicted N-acetylgluc 99.1 9.6E-08 2.1E-12 80.8 23.2 249 60-331 66-328 (389)
40 PRK12370 invasion protein regu 99.1 9.6E-08 2.1E-12 91.3 25.7 152 132-288 317-470 (553)
41 COG2956 Predicted N-acetylgluc 99.1 2.9E-07 6.2E-12 78.0 24.6 238 77-341 49-305 (389)
42 COG3071 HemY Uncharacterized e 99.1 3.2E-07 6.9E-12 79.8 25.5 239 76-342 97-385 (400)
43 PRK14574 hmsH outer membrane p 99.0 6.7E-07 1.5E-11 88.1 30.2 272 70-345 41-394 (822)
44 KOG1155 Anaphase-promoting com 99.0 9.7E-08 2.1E-12 84.4 21.1 279 55-342 254-548 (559)
45 TIGR00540 hemY_coli hemY prote 99.0 2.7E-07 5.9E-12 84.9 25.0 217 122-342 121-359 (409)
46 KOG1129 TPR repeat-containing 99.0 4.7E-08 1E-12 82.8 17.0 217 123-344 227-455 (478)
47 PRK12370 invasion protein regu 99.0 4.8E-07 1E-11 86.5 24.9 206 77-288 275-502 (553)
48 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-06 3.1E-11 76.5 25.6 206 134-345 41-263 (296)
49 KOG4318 Bicoid mRNA stability 98.9 4.3E-07 9.3E-12 86.2 21.9 201 65-274 27-286 (1088)
50 KOG1129 TPR repeat-containing 98.9 1.1E-07 2.3E-12 80.7 14.1 219 67-288 227-458 (478)
51 KOG2003 TPR repeat-containing 98.8 2.6E-07 5.6E-12 81.6 16.7 211 127-342 427-684 (840)
52 PF12854 PPR_1: PPR repeat 98.8 5E-09 1.1E-13 59.2 4.1 32 254-285 2-33 (34)
53 PF12854 PPR_1: PPR repeat 98.8 4.8E-09 1E-13 59.3 4.1 32 219-250 2-33 (34)
54 COG3071 HemY Uncharacterized e 98.8 2.2E-06 4.8E-11 74.7 21.9 212 70-288 125-390 (400)
55 COG3063 PilF Tfp pilus assembl 98.8 6.6E-06 1.4E-10 66.7 21.8 178 121-302 37-215 (250)
56 KOG2076 RNA polymerase III tra 98.8 9.8E-06 2.1E-10 77.4 26.4 270 71-342 147-507 (895)
57 KOG2003 TPR repeat-containing 98.8 1.9E-06 4.2E-11 76.2 20.3 197 131-333 502-709 (840)
58 COG3063 PilF Tfp pilus assembl 98.8 8E-06 1.7E-10 66.3 22.1 198 65-288 37-236 (250)
59 KOG2002 TPR-containing nuclear 98.8 4E-06 8.7E-11 80.6 23.3 279 55-342 444-793 (1018)
60 KOG1126 DNA-binding cell divis 98.8 6E-07 1.3E-11 82.8 17.0 241 43-292 334-624 (638)
61 PRK11189 lipoprotein NlpI; Pro 98.7 8.1E-06 1.8E-10 71.7 22.7 192 65-289 66-266 (296)
62 PF12569 NARP1: NMDA receptor- 98.7 2.2E-05 4.9E-10 73.4 25.7 238 71-342 12-286 (517)
63 KOG1155 Anaphase-promoting com 98.7 6.1E-06 1.3E-10 73.3 19.6 210 127-342 235-456 (559)
64 TIGR03302 OM_YfiO outer membra 98.7 6.9E-06 1.5E-10 69.7 19.8 166 121-288 35-232 (235)
65 KOG1173 Anaphase-promoting com 98.6 4.9E-05 1.1E-09 69.3 24.1 246 65-342 246-513 (611)
66 PF04733 Coatomer_E: Coatomer 98.6 4.4E-06 9.4E-11 72.7 17.0 151 127-288 110-265 (290)
67 KOG0985 Vesicle coat protein c 98.6 2E-05 4.3E-10 76.3 21.8 242 68-342 1053-1303(1666)
68 KOG0547 Translocase of outer m 98.6 3E-05 6.4E-10 69.6 21.3 207 132-342 339-561 (606)
69 cd05804 StaR_like StaR_like; a 98.6 0.00014 3E-09 65.8 26.3 255 70-342 50-331 (355)
70 cd05804 StaR_like StaR_like; a 98.5 0.00018 3.9E-09 65.0 26.6 212 127-342 51-288 (355)
71 KOG0495 HAT repeat protein [RN 98.5 0.00068 1.5E-08 63.2 29.4 273 65-342 408-777 (913)
72 KOG1173 Anaphase-promoting com 98.5 6.3E-05 1.4E-09 68.6 22.5 237 60-304 275-532 (611)
73 KOG2076 RNA polymerase III tra 98.5 0.00014 3E-09 69.9 25.7 236 106-343 152-439 (895)
74 PF12569 NARP1: NMDA receptor- 98.5 0.00036 7.9E-09 65.4 27.5 261 59-342 34-329 (517)
75 KOG1070 rRNA processing protei 98.5 6.3E-05 1.4E-09 75.2 22.3 197 90-293 1455-1668(1710)
76 KOG2002 TPR-containing nuclear 98.4 0.00029 6.3E-09 68.3 25.9 181 69-252 348-558 (1018)
77 KOG4340 Uncharacterized conser 98.4 0.00015 3.2E-09 61.3 20.4 267 67-342 14-334 (459)
78 KOG1174 Anaphase-promoting com 98.4 0.00028 6.1E-09 62.2 22.6 254 58-342 227-495 (564)
79 TIGR00756 PPR pentatricopeptid 98.4 6E-07 1.3E-11 51.1 4.3 33 121-153 2-34 (35)
80 PRK10370 formate-dependent nit 98.3 0.00034 7.3E-09 57.5 21.3 168 126-310 23-193 (198)
81 TIGR00756 PPR pentatricopeptid 98.3 9.5E-07 2.1E-11 50.2 4.4 33 226-258 2-34 (35)
82 PF04733 Coatomer_E: Coatomer 98.3 1.9E-05 4.2E-10 68.7 14.4 208 121-342 37-260 (290)
83 TIGR03302 OM_YfiO outer membra 98.3 0.00011 2.5E-09 62.2 18.2 169 61-253 31-232 (235)
84 KOG1070 rRNA processing protei 98.3 0.00021 4.6E-09 71.6 21.5 219 60-282 1455-1694(1710)
85 PRK15179 Vi polysaccharide bio 98.3 0.0003 6.6E-09 68.4 22.5 155 152-310 84-242 (694)
86 PF10037 MRP-S27: Mitochondria 98.3 2E-05 4.3E-10 71.4 13.4 125 148-272 60-186 (429)
87 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4.2E-11 48.7 4.5 32 156-187 3-34 (34)
88 COG5010 TadD Flp pilus assembl 98.3 0.00033 7.1E-09 58.2 19.1 157 126-286 73-229 (257)
89 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4E-11 48.7 4.4 32 121-152 3-34 (34)
90 KOG0495 HAT repeat protein [RN 98.3 0.0019 4.1E-08 60.4 25.6 220 65-288 518-782 (913)
91 COG5010 TadD Flp pilus assembl 98.2 0.00019 4.1E-09 59.6 17.3 182 66-251 40-229 (257)
92 PRK10370 formate-dependent nit 98.2 0.00016 3.5E-09 59.4 16.6 127 131-261 51-180 (198)
93 PRK15359 type III secretion sy 98.2 0.00026 5.7E-09 55.0 16.9 94 157-252 27-120 (144)
94 KOG0547 Translocase of outer m 98.2 0.00014 3.1E-09 65.3 16.4 225 72-305 335-578 (606)
95 KOG1128 Uncharacterized conser 98.2 0.00036 7.9E-09 65.7 19.6 262 65-342 400-674 (777)
96 PRK15359 type III secretion sy 98.2 0.00025 5.3E-09 55.1 16.0 100 191-294 26-125 (144)
97 PRK14720 transcript cleavage f 98.1 0.0016 3.4E-08 64.5 24.1 223 55-305 23-268 (906)
98 KOG2047 mRNA splicing factor [ 98.1 0.0043 9.3E-08 58.0 25.1 40 65-104 250-292 (835)
99 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00037 8.1E-09 63.0 18.1 124 156-286 171-295 (395)
100 TIGR02552 LcrH_SycD type III s 98.1 0.00029 6.2E-09 54.0 15.0 94 192-287 20-113 (135)
101 KOG3081 Vesicle coat complex C 98.1 0.00038 8.2E-09 58.0 15.9 148 128-286 117-269 (299)
102 PF08579 RPM2: Mitochondrial r 98.1 7.1E-05 1.5E-09 53.9 10.1 76 229-304 30-114 (120)
103 PF08579 RPM2: Mitochondrial r 98.1 8.4E-05 1.8E-09 53.5 10.5 81 121-201 27-116 (120)
104 KOG3081 Vesicle coat complex C 98.1 0.0015 3.3E-08 54.4 18.9 140 140-289 94-237 (299)
105 TIGR02552 LcrH_SycD type III s 98.1 0.00039 8.5E-09 53.2 15.0 104 154-261 17-120 (135)
106 PF01535 PPR: PPR repeat; Int 98.1 6.3E-06 1.4E-10 45.4 3.6 30 121-150 2-31 (31)
107 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.6E-09 64.0 15.3 124 121-251 171-295 (395)
108 PF10037 MRP-S27: Mitochondria 98.0 0.0001 2.2E-09 66.9 12.7 123 183-305 60-184 (429)
109 PF09976 TPR_21: Tetratricopep 98.0 0.00059 1.3E-08 53.1 15.6 125 121-248 14-142 (145)
110 PRK15179 Vi polysaccharide bio 98.0 0.00084 1.8E-08 65.4 19.7 141 121-266 88-229 (694)
111 KOG3785 Uncharacterized conser 98.0 0.00066 1.4E-08 58.8 16.6 244 65-333 287-536 (557)
112 PF09976 TPR_21: Tetratricopep 98.0 0.00087 1.9E-08 52.1 16.1 126 156-285 14-144 (145)
113 PF01535 PPR: PPR repeat; Int 98.0 1.1E-05 2.4E-10 44.3 3.6 27 227-253 3-29 (31)
114 KOG3616 Selective LIM binding 98.0 0.00047 1E-08 65.1 15.9 113 160-285 738-850 (1636)
115 PLN02789 farnesyltranstransfer 97.9 0.0074 1.6E-07 53.4 22.6 212 66-305 40-266 (320)
116 PRK14720 transcript cleavage f 97.9 0.0033 7.2E-08 62.3 21.5 194 121-342 33-247 (906)
117 KOG3617 WD40 and TPR repeat-co 97.9 0.0037 8E-08 60.0 20.7 204 64-285 758-993 (1416)
118 PRK04841 transcriptional regul 97.9 0.0048 1E-07 63.2 23.9 24 319-342 732-755 (903)
119 KOG1125 TPR repeat-containing 97.9 0.0016 3.5E-08 59.9 17.9 185 129-342 295-522 (579)
120 COG4783 Putative Zn-dependent 97.9 0.0035 7.7E-08 56.7 19.6 138 129-288 316-454 (484)
121 KOG3785 Uncharacterized conser 97.9 0.01 2.2E-07 51.7 21.5 116 66-183 60-214 (557)
122 KOG3060 Uncharacterized conser 97.9 0.0069 1.5E-07 50.3 19.3 84 167-252 99-182 (289)
123 KOG2376 Signal recognition par 97.8 0.011 2.4E-07 54.8 22.2 113 68-184 17-140 (652)
124 PRK04841 transcriptional regul 97.8 0.014 3E-07 59.9 26.0 224 64-287 342-601 (903)
125 PF06239 ECSIT: Evolutionarily 97.8 0.00047 1E-08 56.0 11.8 88 152-239 45-153 (228)
126 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0013 2.8E-08 48.8 13.8 97 122-218 5-105 (119)
127 KOG2047 mRNA splicing factor [ 97.8 0.024 5.3E-07 53.2 23.4 275 50-342 69-411 (835)
128 PF06239 ECSIT: Evolutionarily 97.8 0.00071 1.5E-08 54.9 11.8 50 187-236 45-99 (228)
129 cd00189 TPR Tetratricopeptide 97.8 0.00079 1.7E-08 47.0 11.3 91 194-286 5-95 (100)
130 KOG4162 Predicted calmodulin-b 97.8 0.042 9.1E-07 52.6 24.9 114 226-342 652-778 (799)
131 KOG1125 TPR repeat-containing 97.7 0.00087 1.9E-08 61.6 13.4 211 71-286 293-525 (579)
132 KOG1128 Uncharacterized conser 97.7 0.0059 1.3E-07 57.9 18.8 113 202-342 498-611 (777)
133 KOG4340 Uncharacterized conser 97.7 0.0062 1.3E-07 51.8 17.2 165 122-291 13-210 (459)
134 KOG3617 WD40 and TPR repeat-co 97.7 0.0012 2.6E-08 63.2 14.4 130 72-214 737-883 (1416)
135 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0025 5.3E-08 47.3 13.9 94 195-288 8-105 (119)
136 COG4783 Putative Zn-dependent 97.7 0.0023 5E-08 57.8 15.4 118 166-287 318-436 (484)
137 cd00189 TPR Tetratricopeptide 97.7 0.0011 2.4E-08 46.2 11.1 93 122-216 3-95 (100)
138 KOG1174 Anaphase-promoting com 97.7 0.038 8.1E-07 49.3 24.1 273 65-341 99-391 (564)
139 KOG3060 Uncharacterized conser 97.7 0.024 5.3E-07 47.2 20.8 162 131-297 24-190 (289)
140 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.6E-08 56.5 13.6 130 121-253 3-136 (280)
141 PF04840 Vps16_C: Vps16, C-ter 97.6 0.033 7.1E-07 49.3 21.5 106 191-340 179-284 (319)
142 PF12895 Apc3: Anaphase-promot 97.5 0.00017 3.7E-09 50.3 5.0 79 133-213 3-82 (84)
143 KOG1915 Cell cycle control pro 97.5 0.066 1.4E-06 48.7 23.1 160 121-287 75-235 (677)
144 PRK02603 photosystem I assembl 97.5 0.0071 1.5E-07 48.5 14.8 88 121-209 37-126 (172)
145 PF12895 Apc3: Anaphase-promot 97.5 0.00036 7.7E-09 48.6 6.2 80 202-284 2-83 (84)
146 KOG3616 Selective LIM binding 97.5 0.0017 3.7E-08 61.5 11.8 160 75-248 744-906 (1636)
147 CHL00033 ycf3 photosystem I as 97.5 0.0035 7.6E-08 50.0 12.4 81 154-235 35-117 (168)
148 PF05843 Suf: Suppressor of fo 97.5 0.0085 1.8E-07 52.2 15.7 145 155-305 2-151 (280)
149 PLN02789 farnesyltranstransfer 97.4 0.073 1.6E-06 47.2 25.5 206 121-331 39-268 (320)
150 PRK10866 outer membrane biogen 97.4 0.04 8.7E-07 46.8 19.0 160 126-287 39-240 (243)
151 KOG2053 Mitochondrial inherita 97.4 0.033 7.2E-07 54.2 19.7 135 130-271 20-156 (932)
152 PRK02603 photosystem I assembl 97.4 0.015 3.2E-07 46.6 15.3 89 153-242 34-124 (172)
153 KOG1915 Cell cycle control pro 97.4 0.099 2.2E-06 47.6 26.4 136 75-214 85-232 (677)
154 KOG1914 mRNA cleavage and poly 97.4 0.09 2E-06 48.6 21.2 168 135-305 347-521 (656)
155 PF14938 SNAP: Soluble NSF att 97.4 0.013 2.9E-07 51.1 16.0 206 63-286 35-264 (282)
156 PF12688 TPR_5: Tetratrico pep 97.4 0.018 4E-07 42.8 14.4 90 127-216 9-102 (120)
157 CHL00033 ycf3 photosystem I as 97.4 0.0065 1.4E-07 48.5 12.9 92 121-213 37-137 (168)
158 PLN03088 SGT1, suppressor of 97.4 0.0072 1.6E-07 54.6 14.3 90 162-253 10-99 (356)
159 PLN03088 SGT1, suppressor of 97.3 0.0099 2.1E-07 53.7 15.0 101 126-230 9-109 (356)
160 KOG1914 mRNA cleavage and poly 97.3 0.13 2.8E-06 47.6 22.4 45 44-89 35-79 (656)
161 PF14938 SNAP: Soluble NSF att 97.3 0.017 3.7E-07 50.4 15.5 184 121-305 37-246 (282)
162 PRK15363 pathogenicity island 97.3 0.015 3.2E-07 45.1 13.1 94 123-218 39-132 (157)
163 PRK10153 DNA-binding transcrip 97.3 0.033 7.1E-07 52.8 18.1 138 148-288 331-482 (517)
164 KOG2376 Signal recognition par 97.3 0.027 5.8E-07 52.3 16.6 170 161-342 19-199 (652)
165 PF12688 TPR_5: Tetratrico pep 97.2 0.024 5.2E-07 42.2 13.6 88 162-251 9-102 (120)
166 PRK15363 pathogenicity island 97.2 0.024 5.3E-07 44.0 13.8 92 195-288 41-132 (157)
167 KOG0985 Vesicle coat protein c 97.2 0.28 6.2E-06 48.9 24.8 200 121-342 986-1218(1666)
168 PRK10153 DNA-binding transcrip 97.2 0.083 1.8E-06 50.1 19.8 171 65-262 309-489 (517)
169 PF04840 Vps16_C: Vps16, C-ter 97.2 0.044 9.6E-07 48.4 16.9 112 154-285 177-288 (319)
170 PF03704 BTAD: Bacterial trans 97.2 0.017 3.7E-07 44.8 12.8 72 226-298 64-140 (146)
171 KOG2796 Uncharacterized conser 97.1 0.036 7.7E-07 46.5 14.6 131 121-252 179-314 (366)
172 PF14559 TPR_19: Tetratricopep 97.1 0.0027 6E-08 41.9 7.0 22 229-250 30-51 (68)
173 KOG1156 N-terminal acetyltrans 97.1 0.13 2.7E-06 48.6 19.3 174 121-300 77-258 (700)
174 PF14559 TPR_19: Tetratricopep 97.1 0.003 6.5E-08 41.7 6.9 52 166-218 3-54 (68)
175 PF03704 BTAD: Bacterial trans 96.9 0.007 1.5E-07 47.0 8.8 74 190-264 63-141 (146)
176 PF12921 ATP13: Mitochondrial 96.9 0.02 4.4E-07 43.1 10.8 47 255-301 48-95 (126)
177 PF13432 TPR_16: Tetratricopep 96.9 0.0072 1.6E-07 39.5 7.1 51 129-180 7-57 (65)
178 PF13432 TPR_16: Tetratricopep 96.8 0.0088 1.9E-07 39.1 7.1 58 160-218 3-60 (65)
179 KOG1156 N-terminal acetyltrans 96.8 0.49 1.1E-05 44.8 24.7 185 65-252 77-282 (700)
180 PRK10803 tol-pal system protei 96.8 0.049 1.1E-06 46.8 13.3 98 121-218 145-246 (263)
181 PF12921 ATP13: Mitochondrial 96.8 0.033 7.2E-07 41.9 10.7 51 219-269 47-98 (126)
182 PF13424 TPR_12: Tetratricopep 96.7 0.0089 1.9E-07 40.7 6.7 74 59-147 1-74 (78)
183 PRK10803 tol-pal system protei 96.7 0.052 1.1E-06 46.6 12.5 98 189-288 143-246 (263)
184 KOG2280 Vacuolar assembly/sort 96.6 0.34 7.3E-06 46.7 17.8 19 323-341 775-793 (829)
185 PF13414 TPR_11: TPR repeat; P 96.5 0.019 4.1E-07 37.9 7.3 17 198-214 12-28 (69)
186 PF13414 TPR_11: TPR repeat; P 96.5 0.018 3.8E-07 38.1 7.1 64 223-287 2-66 (69)
187 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.31 6.6E-06 44.3 16.1 129 121-252 399-530 (660)
188 KOG1127 TPR repeat-containing 96.4 0.18 3.8E-06 50.1 15.7 160 121-286 494-657 (1238)
189 KOG4162 Predicted calmodulin-b 96.4 0.81 1.8E-05 44.3 19.3 196 92-288 322-542 (799)
190 KOG0548 Molecular co-chaperone 96.4 0.79 1.7E-05 42.5 18.6 155 121-288 300-455 (539)
191 KOG3941 Intermediate in Toll s 96.4 0.045 9.8E-07 46.4 9.9 46 206-251 140-186 (406)
192 KOG3941 Intermediate in Toll s 96.3 0.052 1.1E-06 46.0 10.1 120 221-349 64-190 (406)
193 PF13170 DUF4003: Protein of u 96.3 0.19 4E-06 44.0 14.1 152 135-288 78-250 (297)
194 smart00299 CLH Clathrin heavy 96.3 0.34 7.4E-06 37.1 15.1 84 159-250 12-95 (140)
195 PF13424 TPR_12: Tetratricopep 96.2 0.014 3.1E-07 39.7 5.6 62 225-286 6-73 (78)
196 KOG0553 TPR repeat-containing 96.2 0.083 1.8E-06 45.2 11.0 101 163-267 90-190 (304)
197 PF13525 YfiO: Outer membrane 96.2 0.58 1.3E-05 38.5 17.3 58 126-183 12-71 (203)
198 KOG1127 TPR repeat-containing 96.2 0.78 1.7E-05 45.8 18.3 236 94-334 493-752 (1238)
199 COG4235 Cytochrome c biogenesi 96.1 0.52 1.1E-05 40.5 15.3 100 187-288 154-256 (287)
200 PF13371 TPR_9: Tetratricopept 96.1 0.054 1.2E-06 36.1 7.8 51 200-251 6-56 (73)
201 KOG0553 TPR repeat-containing 96.1 0.079 1.7E-06 45.3 10.1 100 127-230 89-188 (304)
202 PF13371 TPR_9: Tetratricopept 96.1 0.062 1.3E-06 35.8 8.0 63 231-296 2-64 (73)
203 COG4700 Uncharacterized protei 96.0 0.62 1.3E-05 37.3 18.4 134 150-285 85-219 (251)
204 KOG1538 Uncharacterized conser 95.9 0.052 1.1E-06 51.1 8.9 113 161-288 723-846 (1081)
205 KOG2053 Mitochondrial inherita 95.8 2.3 5E-05 42.1 25.9 166 121-289 79-256 (932)
206 COG4700 Uncharacterized protei 95.7 0.81 1.8E-05 36.6 17.7 102 185-288 85-189 (251)
207 KOG0624 dsRNA-activated protei 95.7 1.4 3E-05 38.9 20.0 220 72-304 115-351 (504)
208 smart00299 CLH Clathrin heavy 95.6 0.73 1.6E-05 35.3 15.3 126 123-271 11-137 (140)
209 KOG0548 Molecular co-chaperone 95.6 1 2.2E-05 41.8 15.5 164 121-288 226-421 (539)
210 KOG1585 Protein required for f 95.5 1.3 2.7E-05 37.2 15.6 201 63-283 31-251 (308)
211 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.3 6.6E-06 44.6 11.9 64 153-218 74-141 (453)
212 PF04053 Coatomer_WDAD: Coatom 95.4 0.54 1.2E-05 43.7 13.8 130 122-284 298-427 (443)
213 PRK10866 outer membrane biogen 95.4 1.5 3.2E-05 37.3 19.8 165 153-342 31-236 (243)
214 PF13525 YfiO: Outer membrane 95.3 1.3 2.9E-05 36.4 16.1 178 68-279 10-198 (203)
215 KOG2280 Vacuolar assembly/sort 95.3 0.98 2.1E-05 43.6 14.9 82 256-342 681-768 (829)
216 COG5107 RNA14 Pre-mRNA 3'-end 95.2 2.4 5.3E-05 38.8 19.0 147 153-305 396-546 (660)
217 PF10300 DUF3808: Protein of u 95.2 1.5 3.2E-05 41.3 16.0 184 49-252 174-375 (468)
218 PF07035 Mic1: Colon cancer-as 95.1 1.3 2.8E-05 35.0 15.8 136 139-288 14-149 (167)
219 PRK15331 chaperone protein Sic 95.1 1.2 2.6E-05 34.9 12.6 87 199-287 47-133 (165)
220 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.17 3.7E-06 46.2 9.1 99 186-290 72-176 (453)
221 COG4235 Cytochrome c biogenesi 95.0 0.52 1.1E-05 40.5 11.4 99 153-253 155-256 (287)
222 PF09205 DUF1955: Domain of un 95.0 1.1 2.4E-05 33.7 14.2 66 224-290 86-151 (161)
223 PF04053 Coatomer_WDAD: Coatom 94.9 0.78 1.7E-05 42.7 13.2 131 96-250 298-428 (443)
224 PF10602 RPN7: 26S proteasome 94.9 0.47 1E-05 38.1 10.5 62 121-182 38-101 (177)
225 PF13170 DUF4003: Protein of u 94.8 1.2 2.7E-05 39.0 13.4 128 170-299 78-222 (297)
226 KOG2041 WD40 repeat protein [G 94.7 4.3 9.4E-05 39.3 19.8 30 313-342 1052-1081(1189)
227 PRK15331 chaperone protein Sic 94.6 0.96 2.1E-05 35.5 11.0 90 126-217 44-133 (165)
228 PF10300 DUF3808: Protein of u 94.5 4.2 9.2E-05 38.3 17.7 163 121-286 190-374 (468)
229 KOG2796 Uncharacterized conser 94.4 2.8 6.1E-05 35.6 20.9 146 156-304 179-329 (366)
230 KOG1920 IkappaB kinase complex 94.4 3 6.4E-05 42.7 16.2 160 78-252 852-1027(1265)
231 KOG0624 dsRNA-activated protei 94.2 3.8 8.2E-05 36.2 24.1 266 73-342 48-365 (504)
232 COG1729 Uncharacterized protei 94.1 1.3 2.8E-05 37.7 11.6 96 122-218 145-244 (262)
233 KOG0543 FKBP-type peptidyl-pro 94.0 2.1 4.4E-05 38.6 13.1 94 190-286 258-353 (397)
234 COG3629 DnrI DNA-binding trans 93.9 0.96 2.1E-05 39.0 10.6 79 224-303 153-236 (280)
235 PF08631 SPO22: Meiosis protei 93.8 4.1 9E-05 35.4 26.6 168 73-260 3-193 (278)
236 COG3898 Uncharacterized membra 93.6 5.3 0.00012 36.0 21.8 146 75-222 132-296 (531)
237 KOG2610 Uncharacterized conser 93.6 2.7 5.9E-05 36.9 12.7 152 131-284 115-272 (491)
238 PF13512 TPR_18: Tetratricopep 93.5 1.3 2.7E-05 34.0 9.5 73 129-201 20-94 (142)
239 PF04184 ST7: ST7 protein; In 93.4 2.9 6.2E-05 38.8 13.1 83 190-273 260-345 (539)
240 KOG0543 FKBP-type peptidyl-pro 93.3 2.3 4.9E-05 38.3 12.1 105 198-305 217-335 (397)
241 PF13281 DUF4071: Domain of un 93.1 6.4 0.00014 35.6 21.0 184 123-310 145-354 (374)
242 KOG2114 Vacuolar assembly/sort 93.1 5.2 0.00011 39.5 15.0 145 123-285 372-516 (933)
243 COG3629 DnrI DNA-binding trans 93.1 1.6 3.5E-05 37.6 10.7 78 190-268 154-236 (280)
244 KOG2041 WD40 repeat protein [G 93.0 9.3 0.0002 37.2 16.5 224 65-302 798-1065(1189)
245 PF10602 RPN7: 26S proteasome 92.9 2.1 4.5E-05 34.4 10.7 97 190-286 37-140 (177)
246 KOG2114 Vacuolar assembly/sort 92.8 4.5 9.7E-05 39.9 14.1 118 121-250 336-457 (933)
247 KOG4555 TPR repeat-containing 92.7 3.4 7.3E-05 31.1 11.6 92 127-219 51-145 (175)
248 PF13176 TPR_7: Tetratricopept 92.6 0.29 6.3E-06 27.5 3.9 24 122-145 2-25 (36)
249 PF13428 TPR_14: Tetratricopep 92.2 0.66 1.4E-05 27.4 5.4 29 121-149 3-31 (44)
250 PF07079 DUF1347: Protein of u 92.2 9.5 0.00021 35.1 22.5 32 311-342 488-519 (549)
251 PF13281 DUF4071: Domain of un 92.2 8.8 0.00019 34.7 17.9 160 92-253 137-334 (374)
252 KOG4555 TPR repeat-containing 91.9 4.3 9.4E-05 30.6 11.7 91 163-254 52-145 (175)
253 COG3118 Thioredoxin domain-con 91.8 8.1 0.00017 33.5 14.9 121 128-251 143-263 (304)
254 KOG1538 Uncharacterized conser 91.7 8.7 0.00019 37.0 14.2 54 195-252 722-775 (1081)
255 KOG4570 Uncharacterized conser 91.7 2.6 5.6E-05 36.7 10.1 103 148-252 58-163 (418)
256 COG1729 Uncharacterized protei 91.6 5.1 0.00011 34.2 11.6 58 230-287 184-243 (262)
257 PF13176 TPR_7: Tetratricopept 91.5 0.55 1.2E-05 26.4 4.2 26 261-286 1-26 (36)
258 PF09205 DUF1955: Domain of un 91.4 4.2 9E-05 30.7 9.6 62 157-219 89-150 (161)
259 PF04184 ST7: ST7 protein; In 91.2 13 0.00028 34.8 15.3 74 228-301 263-338 (539)
260 PF13428 TPR_14: Tetratricopep 91.2 1 2.3E-05 26.5 5.5 27 192-218 4-30 (44)
261 COG4105 ComL DNA uptake lipopr 91.1 8.6 0.00019 32.6 18.6 159 128-288 43-233 (254)
262 PF13512 TPR_18: Tetratricopep 90.2 6.9 0.00015 30.0 12.0 58 161-218 17-76 (142)
263 KOG0276 Vesicle coat complex C 89.7 4.7 0.0001 38.3 10.5 98 166-284 649-746 (794)
264 PF13374 TPR_10: Tetratricopep 89.6 1.1 2.3E-05 25.7 4.6 29 259-287 2-30 (42)
265 KOG1130 Predicted G-alpha GTPa 89.5 1.4 3E-05 39.8 6.8 132 156-287 197-343 (639)
266 PF07035 Mic1: Colon cancer-as 89.3 9.5 0.00021 30.2 14.1 103 174-286 14-116 (167)
267 KOG4570 Uncharacterized conser 89.3 7.1 0.00015 34.1 10.6 104 183-288 58-164 (418)
268 PF13374 TPR_10: Tetratricopep 88.9 1.2 2.6E-05 25.5 4.4 25 191-215 4-28 (42)
269 COG0457 NrfG FOG: TPR repeat [ 88.5 11 0.00025 30.2 23.7 167 121-288 61-231 (291)
270 PF04097 Nic96: Nup93/Nic96; 88.4 27 0.00058 34.3 18.0 143 196-343 265-439 (613)
271 KOG0276 Vesicle coat complex C 88.4 8.9 0.00019 36.6 11.4 81 153-248 665-745 (794)
272 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 4.2 9.1E-05 28.7 7.2 37 214-250 32-68 (103)
273 PF07079 DUF1347: Protein of u 88.2 21 0.00047 33.0 17.9 25 318-342 298-322 (549)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 5 0.00011 28.4 7.4 47 135-181 23-69 (103)
275 PF13762 MNE1: Mitochondrial s 88.0 11 0.00023 29.1 11.6 81 121-201 41-127 (145)
276 COG4455 ImpE Protein of avirul 87.9 9.3 0.0002 31.6 9.9 84 226-310 3-88 (273)
277 COG4649 Uncharacterized protei 87.4 13 0.00029 29.6 14.6 132 156-288 61-196 (221)
278 PF11207 DUF2989: Protein of u 87.1 8.9 0.00019 31.3 9.4 73 206-279 123-198 (203)
279 PF00637 Clathrin: Region in C 86.9 0.17 3.7E-06 38.9 -0.3 51 198-248 16-66 (143)
280 PF00637 Clathrin: Region in C 86.7 0.2 4.3E-06 38.6 0.0 53 161-213 14-66 (143)
281 KOG0550 Molecular chaperone (D 86.6 25 0.00055 32.1 15.6 85 165-253 260-350 (486)
282 PF02284 COX5A: Cytochrome c o 86.2 5.2 0.00011 28.6 6.7 46 137-182 28-73 (108)
283 PF13929 mRNA_stabil: mRNA sta 86.1 22 0.00047 30.9 17.9 132 169-300 143-284 (292)
284 KOG1920 IkappaB kinase complex 86.0 47 0.001 34.6 15.7 21 322-342 1030-1050(1265)
285 KOG0550 Molecular chaperone (D 85.6 29 0.00062 31.8 12.7 152 129-289 179-351 (486)
286 PF09613 HrpB1_HrpK: Bacterial 85.3 16 0.00035 28.6 13.7 55 162-218 18-73 (160)
287 COG3118 Thioredoxin domain-con 84.9 25 0.00055 30.5 16.2 140 162-305 142-283 (304)
288 PF08631 SPO22: Meiosis protei 83.9 28 0.0006 30.2 22.0 163 121-286 86-273 (278)
289 PF11207 DUF2989: Protein of u 83.8 22 0.00048 29.0 10.5 75 169-244 121-198 (203)
290 COG4649 Uncharacterized protei 83.5 21 0.00045 28.5 14.3 136 121-257 61-200 (221)
291 COG0457 NrfG FOG: TPR repeat [ 83.4 21 0.00046 28.5 23.3 165 121-288 97-265 (291)
292 PF02259 FAT: FAT domain; Int 83.3 33 0.00071 30.6 14.8 26 317-342 145-170 (352)
293 PF00515 TPR_1: Tetratricopept 83.0 4.6 9.9E-05 21.8 4.6 28 260-287 2-29 (34)
294 PF07163 Pex26: Pex26 protein; 82.9 22 0.00048 30.6 10.3 91 122-212 86-181 (309)
295 PF13762 MNE1: Mitochondrial s 82.4 21 0.00045 27.6 11.0 92 146-237 29-128 (145)
296 PF00515 TPR_1: Tetratricopept 82.3 5.1 0.00011 21.6 4.6 24 157-180 4-27 (34)
297 PF07721 TPR_4: Tetratricopept 81.5 3.1 6.8E-05 21.2 3.2 24 65-88 3-26 (26)
298 PF13431 TPR_17: Tetratricopep 81.4 3.1 6.7E-05 23.0 3.4 21 223-243 12-32 (34)
299 PF04910 Tcf25: Transcriptiona 81.2 42 0.00092 30.4 19.1 168 59-234 36-234 (360)
300 PF07575 Nucleopor_Nup85: Nup8 81.1 8.4 0.00018 37.3 8.4 168 121-309 374-545 (566)
301 PF13431 TPR_17: Tetratricopep 81.0 1.8 3.9E-05 23.9 2.3 25 315-339 10-34 (34)
302 PF13929 mRNA_stabil: mRNA sta 80.7 37 0.00081 29.5 14.2 141 131-271 140-290 (292)
303 PF02284 COX5A: Cytochrome c o 80.0 20 0.00042 25.8 9.6 62 242-305 28-90 (108)
304 PF07163 Pex26: Pex26 protein; 79.9 31 0.00068 29.8 10.1 89 157-247 86-181 (309)
305 KOG2610 Uncharacterized conser 79.1 47 0.001 29.6 15.1 120 165-286 114-236 (491)
306 COG4105 ComL DNA uptake lipopr 79.0 40 0.00086 28.7 19.6 167 152-341 33-227 (254)
307 PF10366 Vps39_1: Vacuolar sor 78.8 23 0.00049 25.8 8.7 27 121-147 41-67 (108)
308 COG2909 MalT ATP-dependent tra 78.3 81 0.0017 31.9 20.3 179 164-342 425-642 (894)
309 KOG1586 Protein required for f 78.1 40 0.00088 28.4 11.0 29 232-260 162-190 (288)
310 PF07719 TPR_2: Tetratricopept 78.0 8.3 0.00018 20.6 4.6 27 261-287 3-29 (34)
311 PF13181 TPR_8: Tetratricopept 78.0 6.3 0.00014 21.2 4.0 27 121-147 3-29 (34)
312 COG1747 Uncharacterized N-term 77.8 65 0.0014 30.5 20.7 161 121-288 68-234 (711)
313 PF07719 TPR_2: Tetratricopept 77.3 8.8 0.00019 20.5 4.5 15 199-213 11-25 (34)
314 PF09613 HrpB1_HrpK: Bacterial 76.9 34 0.00074 26.9 13.5 70 198-271 19-89 (160)
315 KOG1941 Acetylcholine receptor 76.5 59 0.0013 29.4 12.5 128 123-250 126-272 (518)
316 cd08819 CARD_MDA5_2 Caspase ac 76.5 23 0.00049 24.6 7.0 65 138-208 21-85 (88)
317 COG4455 ImpE Protein of avirul 75.8 20 0.00044 29.7 7.6 77 156-233 3-81 (273)
318 KOG2297 Predicted translation 75.4 39 0.00085 29.6 9.6 16 226-241 323-338 (412)
319 PF11848 DUF3368: Domain of un 75.3 14 0.00031 22.3 5.3 31 166-196 14-44 (48)
320 TIGR02508 type_III_yscG type I 75.3 27 0.00059 25.0 9.2 53 231-289 46-98 (115)
321 PRK11906 transcriptional regul 74.8 74 0.0016 29.7 18.3 145 134-284 273-432 (458)
322 TIGR03504 FimV_Cterm FimV C-te 74.8 7.2 0.00016 23.1 3.7 20 197-216 7-26 (44)
323 TIGR03504 FimV_Cterm FimV C-te 74.2 8.7 0.00019 22.8 4.0 23 265-287 5-27 (44)
324 TIGR02561 HrpB1_HrpK type III 74.0 39 0.00085 26.2 12.5 51 166-218 22-73 (153)
325 COG3947 Response regulator con 73.4 62 0.0014 28.3 12.9 59 226-285 281-339 (361)
326 PF11848 DUF3368: Domain of un 73.4 17 0.00036 22.0 5.2 33 270-302 13-45 (48)
327 KOG2063 Vacuolar assembly/sort 72.9 1.2E+02 0.0025 31.1 16.6 185 121-305 506-743 (877)
328 PF13181 TPR_8: Tetratricopept 72.6 13 0.00028 19.9 4.5 27 261-287 3-29 (34)
329 TIGR02508 type_III_yscG type I 72.1 34 0.00073 24.6 8.1 52 162-219 47-98 (115)
330 PF13174 TPR_6: Tetratricopept 72.1 7.6 0.00016 20.5 3.3 23 265-287 6-28 (33)
331 PHA02875 ankyrin repeat protei 71.8 20 0.00043 33.1 8.0 13 306-318 217-230 (413)
332 PF10579 Rapsyn_N: Rapsyn N-te 70.5 19 0.00041 24.5 5.3 46 131-176 18-65 (80)
333 COG3898 Uncharacterized membra 70.4 87 0.0019 28.6 20.9 156 132-293 133-297 (531)
334 PF11663 Toxin_YhaV: Toxin wit 70.1 4.6 0.0001 30.4 2.6 30 202-233 108-137 (140)
335 PF02847 MA3: MA3 domain; Int 69.2 41 0.00088 24.3 8.1 66 228-295 6-73 (113)
336 TIGR01503 MthylAspMut_E methyl 69.2 21 0.00045 33.1 7.0 156 133-301 28-218 (480)
337 KOG4077 Cytochrome c oxidase, 68.4 42 0.00091 25.2 7.2 43 209-251 69-111 (149)
338 KOG4077 Cytochrome c oxidase, 68.1 47 0.001 24.9 7.4 47 137-183 67-113 (149)
339 KOG3807 Predicted membrane pro 67.8 70 0.0015 28.5 9.6 61 193-255 279-342 (556)
340 PF02259 FAT: FAT domain; Int 67.5 90 0.002 27.7 20.1 64 189-252 146-212 (352)
341 PRK10564 maltose regulon perip 67.3 17 0.00037 31.7 5.8 30 227-256 260-289 (303)
342 PF14669 Asp_Glu_race_2: Putat 66.7 69 0.0015 26.1 12.5 57 228-284 136-206 (233)
343 COG0735 Fur Fe2+/Zn2+ uptake r 66.7 42 0.00091 25.9 7.5 47 178-225 10-56 (145)
344 PF10366 Vps39_1: Vacuolar sor 66.5 47 0.001 24.1 8.9 26 157-182 42-67 (108)
345 COG3947 Response regulator con 66.4 91 0.002 27.3 15.6 44 261-305 281-324 (361)
346 KOG1941 Acetylcholine receptor 65.7 1.1E+02 0.0023 27.8 11.7 166 121-286 85-273 (518)
347 PF11846 DUF3366: Domain of un 64.5 45 0.00098 27.0 7.8 32 186-217 141-172 (193)
348 PRK11906 transcriptional regul 63.7 1.3E+02 0.0028 28.2 13.9 114 132-250 317-433 (458)
349 PF11846 DUF3366: Domain of un 63.5 40 0.00086 27.3 7.3 33 221-253 141-173 (193)
350 PF11663 Toxin_YhaV: Toxin wit 63.4 7.1 0.00015 29.5 2.5 31 237-269 108-138 (140)
351 KOG1464 COP9 signalosome, subu 63.1 1E+02 0.0022 26.7 17.0 215 121-341 67-326 (440)
352 PRK15180 Vi polysaccharide bio 63.1 95 0.0021 29.2 9.9 118 131-252 301-419 (831)
353 PF14689 SPOB_a: Sensor_kinase 61.4 24 0.00052 22.6 4.5 24 263-286 27-50 (62)
354 KOG4648 Uncharacterized conser 60.7 60 0.0013 29.0 7.9 78 127-214 105-183 (536)
355 COG1747 Uncharacterized N-term 60.6 1.6E+02 0.0034 28.1 19.5 151 187-342 64-229 (711)
356 KOG2063 Vacuolar assembly/sort 60.2 2.1E+02 0.0045 29.4 12.5 116 156-271 506-638 (877)
357 cd08819 CARD_MDA5_2 Caspase ac 59.5 57 0.0012 22.7 6.9 64 174-243 22-85 (88)
358 COG4785 NlpI Lipoprotein NlpI, 59.3 1.1E+02 0.0023 25.7 15.7 29 318-346 237-265 (297)
359 PF12816 Vps8: Golgi CORVET co 59.1 6.2 0.00013 32.3 1.7 49 59-107 17-66 (196)
360 smart00028 TPR Tetratricopepti 59.1 21 0.00046 17.7 3.6 27 121-147 3-29 (34)
361 KOG1839 Uncharacterized protei 58.5 1.5E+02 0.0033 31.5 11.4 155 129-283 942-1123(1236)
362 PF04034 DUF367: Domain of unk 58.2 77 0.0017 23.8 7.4 77 44-145 45-125 (127)
363 PF07064 RIC1: RIC1; InterPro 58.1 90 0.002 26.8 8.6 145 65-218 84-249 (258)
364 COG0735 Fur Fe2+/Zn2+ uptake r 58.0 72 0.0016 24.6 7.4 63 210-273 7-69 (145)
365 KOG1130 Predicted G-alpha GTPa 57.9 36 0.00077 31.2 6.2 132 121-252 197-343 (639)
366 PF11768 DUF3312: Protein of u 57.7 1.8E+02 0.0039 27.9 11.8 62 67-148 412-473 (545)
367 PF14689 SPOB_a: Sensor_kinase 57.4 34 0.00073 22.0 4.6 23 229-251 28-50 (62)
368 KOG4648 Uncharacterized conser 57.1 38 0.00082 30.2 6.1 53 162-216 105-158 (536)
369 PF10579 Rapsyn_N: Rapsyn N-te 56.5 48 0.001 22.6 5.3 44 202-245 19-64 (80)
370 PF12862 Apc5: Anaphase-promot 55.5 69 0.0015 22.4 6.8 54 129-182 8-69 (94)
371 KOG0687 26S proteasome regulat 55.4 1.5E+02 0.0033 26.4 13.7 82 261-342 106-205 (393)
372 KOG1550 Extracellular protein 55.3 2.1E+02 0.0045 27.8 18.4 155 129-290 259-428 (552)
373 cd00280 TRFH Telomeric Repeat 55.2 79 0.0017 25.5 7.1 43 123-168 115-157 (200)
374 KOG1464 COP9 signalosome, subu 55.1 1.4E+02 0.0031 25.8 15.9 185 121-329 107-330 (440)
375 PRK11639 zinc uptake transcrip 54.1 87 0.0019 24.9 7.5 36 203-238 39-74 (169)
376 PF09670 Cas_Cas02710: CRISPR- 53.4 1.8E+02 0.0039 26.6 11.0 60 122-183 135-198 (379)
377 PRK11639 zinc uptake transcrip 53.3 89 0.0019 24.8 7.4 62 214-276 16-77 (169)
378 COG5159 RPN6 26S proteasome re 52.7 1.6E+02 0.0035 25.8 11.2 23 263-285 129-151 (421)
379 COG5108 RPO41 Mitochondrial DN 52.3 2.5E+02 0.0054 27.8 11.2 47 159-205 33-81 (1117)
380 KOG1498 26S proteasome regulat 52.0 1.1E+02 0.0023 28.0 8.2 42 56-99 122-165 (439)
381 PF04190 DUF410: Protein of un 51.7 1.6E+02 0.0034 25.4 15.4 133 65-218 32-170 (260)
382 KOG1258 mRNA processing protei 51.5 2.4E+02 0.0051 27.3 17.6 174 93-273 297-489 (577)
383 PF09477 Type_III_YscG: Bacter 51.3 93 0.002 22.7 9.2 77 204-287 21-97 (116)
384 PRK10564 maltose regulon perip 51.3 34 0.00074 29.9 5.0 37 190-226 258-294 (303)
385 PF10475 DUF2450: Protein of u 50.3 1.7E+02 0.0038 25.5 9.8 109 159-279 103-217 (291)
386 TIGR02561 HrpB1_HrpK type III 50.1 1.2E+02 0.0026 23.6 11.8 51 200-254 21-74 (153)
387 KOG3807 Predicted membrane pro 49.8 1.9E+02 0.0042 25.8 9.5 107 168-289 230-341 (556)
388 PF11817 Foie-gras_1: Foie gra 49.2 1.1E+02 0.0025 25.9 8.0 59 228-286 182-245 (247)
389 KOG4234 TPR repeat-containing 48.3 1.6E+02 0.0034 24.4 10.0 91 127-218 103-197 (271)
390 PF11817 Foie-gras_1: Foie gra 47.9 1.1E+02 0.0024 25.9 7.7 57 194-250 183-244 (247)
391 KOG0890 Protein kinase of the 47.7 2.1E+02 0.0046 32.7 10.9 115 124-245 1388-1504(2382)
392 PF06552 TOM20_plant: Plant sp 47.1 1.5E+02 0.0033 23.9 7.8 77 135-219 51-137 (186)
393 KOG2659 LisH motif-containing 46.6 1.8E+02 0.0038 24.5 9.3 64 221-286 23-91 (228)
394 COG5159 RPN6 26S proteasome re 46.0 2.1E+02 0.0045 25.1 14.8 159 126-284 10-190 (421)
395 KOG0890 Protein kinase of the 45.2 5.5E+02 0.012 29.8 14.1 145 68-213 1388-1542(2382)
396 PF11838 ERAP1_C: ERAP1-like C 45.2 2.1E+02 0.0046 25.0 17.3 187 78-284 55-262 (324)
397 PF13934 ELYS: Nuclear pore co 44.7 1.9E+02 0.0041 24.3 11.5 54 195-251 114-167 (226)
398 cd07153 Fur_like Ferric uptake 44.7 62 0.0013 23.5 5.0 45 125-169 6-50 (116)
399 PF07575 Nucleopor_Nup85: Nup8 44.3 43 0.00094 32.5 5.2 55 125-181 411-465 (566)
400 PF02847 MA3: MA3 domain; Int 44.3 78 0.0017 22.8 5.5 61 123-185 6-68 (113)
401 KOG0991 Replication factor C, 44.3 2E+02 0.0044 24.5 13.4 93 199-294 169-273 (333)
402 PF09670 Cas_Cas02710: CRISPR- 44.1 2.6E+02 0.0055 25.7 12.5 57 161-218 138-198 (379)
403 PF12926 MOZART2: Mitotic-spin 44.1 1.1E+02 0.0023 21.3 8.1 43 175-217 29-71 (88)
404 PRK15180 Vi polysaccharide bio 43.6 2.9E+02 0.0063 26.2 11.2 124 160-287 295-419 (831)
405 KOG2066 Vacuolar assembly/sort 43.2 3.7E+02 0.0079 27.2 14.4 161 164-342 366-529 (846)
406 PRK14700 recombination factor 42.9 2.4E+02 0.0051 24.9 9.9 143 61-212 65-224 (300)
407 KOG0686 COP9 signalosome, subu 42.5 2.8E+02 0.0061 25.6 18.4 177 121-305 152-355 (466)
408 PF10475 DUF2450: Protein of u 42.4 2.3E+02 0.0051 24.7 11.2 53 194-252 103-155 (291)
409 smart00544 MA3 Domain in DAP-5 42.4 1.3E+02 0.0028 21.7 12.2 59 229-289 7-67 (113)
410 PRK09462 fur ferric uptake reg 42.4 1.6E+02 0.0034 22.7 7.6 34 205-238 33-66 (148)
411 PF11768 DUF3312: Protein of u 41.8 3.3E+02 0.0071 26.2 10.8 63 121-183 410-473 (545)
412 COG2909 MalT ATP-dependent tra 41.6 4.1E+02 0.0088 27.3 18.4 30 263-292 622-651 (894)
413 PRK09462 fur ferric uptake reg 41.5 1.6E+02 0.0035 22.6 7.4 61 214-275 7-68 (148)
414 COG5187 RPN7 26S proteasome re 40.9 2.5E+02 0.0055 24.7 9.5 117 171-289 55-185 (412)
415 KOG4234 TPR repeat-containing 40.8 2.1E+02 0.0046 23.7 9.8 88 164-253 105-197 (271)
416 PF09477 Type_III_YscG: Bacter 40.6 1.4E+02 0.0031 21.7 8.4 80 133-219 20-99 (116)
417 KOG2422 Uncharacterized conser 40.6 3.5E+02 0.0077 26.3 14.0 92 122-214 345-444 (665)
418 PRK09857 putative transposase; 40.5 2.3E+02 0.0051 24.8 8.7 28 231-258 247-274 (292)
419 PRK09857 putative transposase; 40.3 2.6E+02 0.0056 24.6 9.8 66 227-293 209-274 (292)
420 COG2976 Uncharacterized protei 40.2 2.1E+02 0.0045 23.5 14.7 89 196-289 96-189 (207)
421 COG5108 RPO41 Mitochondrial DN 40.2 2.8E+02 0.0061 27.5 9.4 48 124-171 33-82 (1117)
422 KOG2066 Vacuolar assembly/sort 39.7 4.1E+02 0.009 26.8 20.0 141 70-217 363-533 (846)
423 PF10345 Cohesin_load: Cohesin 39.7 3.8E+02 0.0082 26.4 21.4 195 91-286 28-252 (608)
424 cd07153 Fur_like Ferric uptake 39.4 79 0.0017 22.9 4.9 44 196-239 7-50 (116)
425 cd00280 TRFH Telomeric Repeat 39.3 2.1E+02 0.0045 23.2 7.9 23 230-252 117-139 (200)
426 PF00244 14-3-3: 14-3-3 protei 39.0 2.4E+02 0.0052 23.8 9.5 59 124-182 6-65 (236)
427 KOG1585 Protein required for f 38.9 2.5E+02 0.0055 24.1 14.3 104 202-305 123-239 (308)
428 PF01475 FUR: Ferric uptake re 38.7 59 0.0013 23.9 4.2 44 125-168 13-56 (120)
429 KOG1550 Extracellular protein 37.9 3.9E+02 0.0084 26.0 16.0 149 135-289 228-394 (552)
430 PF12862 Apc5: Anaphase-promot 37.9 1.4E+02 0.003 20.8 7.2 23 265-287 47-69 (94)
431 COG4785 NlpI Lipoprotein NlpI, 37.7 2.5E+02 0.0054 23.6 17.2 213 77-310 60-282 (297)
432 KOG2297 Predicted translation 37.2 3E+02 0.0065 24.4 10.5 77 199-285 265-347 (412)
433 PF03745 DUF309: Domain of unk 36.5 1.2E+02 0.0025 19.5 5.7 48 129-176 9-61 (62)
434 KOG0889 Histone acetyltransfer 36.3 5.4E+02 0.012 31.2 12.0 155 125-288 2488-2661(3550)
435 KOG0991 Replication factor C, 35.7 2.8E+02 0.006 23.7 13.6 139 121-269 132-282 (333)
436 KOG4567 GTPase-activating prot 35.6 2.6E+02 0.0057 24.8 7.8 43 210-252 264-306 (370)
437 KOG2168 Cullins [Cell cycle co 35.4 5E+02 0.011 26.5 11.1 25 68-92 330-354 (835)
438 PRK02287 hypothetical protein; 35.4 2.3E+02 0.005 22.6 7.6 65 58-147 102-168 (171)
439 PRK08691 DNA polymerase III su 33.9 5.1E+02 0.011 26.1 11.3 88 206-296 182-282 (709)
440 PF01475 FUR: Ferric uptake re 33.3 74 0.0016 23.3 3.9 44 230-273 13-56 (120)
441 PRK14958 DNA polymerase III su 30.6 5E+02 0.011 25.0 12.5 35 181-217 192-226 (509)
442 PF09454 Vps23_core: Vps23 cor 30.3 1.1E+02 0.0023 19.9 3.7 9 241-249 25-33 (65)
443 PF14669 Asp_Glu_race_2: Putat 30.3 3.1E+02 0.0067 22.5 10.3 59 191-249 134-206 (233)
444 KOG4507 Uncharacterized conser 30.2 4.5E+02 0.0098 25.7 9.0 86 132-218 620-705 (886)
445 PF13934 ELYS: Nuclear pore co 30.2 3.3E+02 0.0071 22.8 10.8 107 121-238 78-186 (226)
446 PF15297 CKAP2_C: Cytoskeleton 29.6 3.8E+02 0.0082 24.2 8.0 62 241-304 120-185 (353)
447 PF07678 A2M_comp: A-macroglob 29.5 3.5E+02 0.0076 22.9 8.3 27 261-287 194-220 (246)
448 cd08326 CARD_CASP9 Caspase act 29.4 1.9E+02 0.0042 19.9 7.7 32 204-239 45-76 (84)
449 PF04090 RNA_pol_I_TF: RNA pol 29.3 3.2E+02 0.007 22.4 10.8 28 121-148 43-70 (199)
450 PF02607 B12-binding_2: B12 bi 29.2 1.3E+02 0.0028 20.0 4.3 33 132-164 14-46 (79)
451 KOG1258 mRNA processing protei 29.2 5.4E+02 0.012 25.0 19.9 177 121-305 299-486 (577)
452 PF04124 Dor1: Dor1-like famil 28.8 3.2E+02 0.007 24.5 7.9 38 228-265 110-148 (338)
453 PF11838 ERAP1_C: ERAP1-like C 28.6 4E+02 0.0087 23.3 15.4 81 205-288 146-230 (324)
454 PHA02875 ankyrin repeat protei 28.6 1.1E+02 0.0024 28.1 5.1 165 161-341 6-188 (413)
455 COG2178 Predicted RNA-binding 28.5 3.3E+02 0.0072 22.3 9.1 20 162-181 37-56 (204)
456 COG2405 Predicted nucleic acid 28.5 1.4E+02 0.0029 23.0 4.4 21 70-90 9-29 (157)
457 COG4003 Uncharacterized protei 28.4 1.2E+02 0.0025 20.8 3.6 27 159-185 36-62 (98)
458 PF09868 DUF2095: Uncharacteri 28.2 2.5E+02 0.0053 20.7 5.5 25 195-219 67-91 (128)
459 KOG0687 26S proteasome regulat 28.1 4.4E+02 0.0096 23.6 15.3 134 150-287 66-209 (393)
460 COG2137 OraA Uncharacterized p 28.1 3.2E+02 0.0068 21.9 13.3 127 138-286 37-165 (174)
461 PF09868 DUF2095: Uncharacteri 27.9 2.5E+02 0.0054 20.7 5.6 25 160-184 67-91 (128)
462 TIGR03581 EF_0839 conserved hy 27.6 2.3E+02 0.005 23.6 5.9 83 134-216 136-235 (236)
463 PF14853 Fis1_TPR_C: Fis1 C-te 27.2 1.6E+02 0.0034 18.2 5.0 21 198-218 10-30 (53)
464 COG4003 Uncharacterized protei 26.9 1.1E+02 0.0024 20.9 3.3 27 124-150 36-62 (98)
465 PRK14958 DNA polymerase III su 26.7 5.8E+02 0.013 24.5 12.6 84 137-223 182-279 (509)
466 PF08542 Rep_fac_C: Replicatio 26.0 2.2E+02 0.0047 19.4 6.1 33 153-186 4-36 (89)
467 PF10516 SHNi-TPR: SHNi-TPR; 25.7 1.2E+02 0.0025 17.3 2.9 34 319-352 2-37 (38)
468 PRK13342 recombination factor 25.4 5.4E+02 0.012 23.8 18.4 44 136-181 154-201 (413)
469 PF07720 TPR_3: Tetratricopept 24.7 1.4E+02 0.003 16.7 3.5 22 321-342 4-25 (36)
470 PF06957 COPI_C: Coatomer (COP 23.9 1.8E+02 0.004 27.0 5.4 105 75-184 216-330 (422)
471 KOG4567 GTPase-activating prot 23.8 5.2E+02 0.011 23.0 10.2 58 243-305 262-319 (370)
472 PF10155 DUF2363: Uncharacteri 23.1 3.3E+02 0.0072 20.5 11.1 94 157-250 21-124 (126)
473 COG0790 FOG: TPR repeat, SEL1 23.1 4.9E+02 0.011 22.4 20.2 162 127-298 85-276 (292)
474 PRK14963 DNA polymerase III su 23.0 6.8E+02 0.015 24.0 11.4 84 217-304 190-285 (504)
475 KOG4507 Uncharacterized conser 22.8 7.2E+02 0.016 24.5 8.9 54 234-288 652-705 (886)
476 PF02184 HAT: HAT (Half-A-TPR) 22.4 1.4E+02 0.003 16.3 2.6 21 205-227 3-23 (32)
477 cd00245 Glm_e Coenzyme B12-dep 22.4 1.4E+02 0.003 27.8 4.3 152 168-333 25-198 (428)
478 KOG1586 Protein required for f 22.2 5E+02 0.011 22.2 13.7 29 265-293 160-188 (288)
479 PF06552 TOM20_plant: Plant sp 22.1 4.3E+02 0.0093 21.4 8.2 41 241-289 97-137 (186)
480 PRK13342 recombination factor 21.9 6.4E+02 0.014 23.3 14.8 34 133-166 244-277 (413)
481 KOG2582 COP9 signalosome, subu 21.6 6.3E+02 0.014 23.1 8.5 148 73-254 193-346 (422)
482 cd07229 Pat_TGL3_like Triacylg 21.5 4.2E+02 0.0091 24.4 7.1 103 175-282 100-209 (391)
483 PF08897 DUF1841: Domain of un 21.2 3.8E+02 0.0083 20.5 8.2 59 266-325 74-134 (137)
484 COG2405 Predicted nucleic acid 21.2 2.2E+02 0.0047 21.9 4.3 33 270-302 120-152 (157)
485 COG2178 Predicted RNA-binding 21.0 4.7E+02 0.01 21.4 9.4 96 191-287 31-149 (204)
486 PF04124 Dor1: Dor1-like famil 20.9 4.3E+02 0.0092 23.7 7.1 24 123-146 110-133 (338)
487 cd07229 Pat_TGL3_like Triacylg 20.9 4.4E+02 0.0095 24.3 7.1 132 140-276 100-254 (391)
488 PRK06645 DNA polymerase III su 20.7 7.6E+02 0.017 23.7 11.3 34 181-216 201-234 (507)
489 PRK14956 DNA polymerase III su 20.7 7.5E+02 0.016 23.6 12.0 42 138-181 185-227 (484)
490 cd02680 MIT_calpain7_2 MIT: do 20.6 2.4E+02 0.0053 18.9 4.1 15 272-286 19-33 (75)
491 KOG3154 Uncharacterized conser 20.1 4.4E+02 0.0095 22.0 6.1 82 43-147 125-208 (263)
492 cd08790 DED_DEDD Death Effecto 20.1 1.6E+02 0.0035 20.9 3.2 42 131-173 36-77 (97)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-47 Score=378.40 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=220.0
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHhcCCC-----CchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHH
Q 045379 62 LSPTAQQILRFVQREVDSNTIWDAFDSLP-----PTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIE 127 (352)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~ 127 (352)
...++++|+.+|+++|+++.|+++|++|. ||..+|+.++.+|++.|+.+.+.+++..+. +||.||.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44467777777777777777777777764 677777777777777777777766666654 7777777
Q ss_pred HHHccCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 128 AYGQKSLHKKAEFTYLELLD--SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 77777777777777777765 5677777777777777777777777777777777777777777788888888887888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88888888887777777877888888888888888888888888877777788888888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHHh
Q 045379 286 QGAGIEPDVYAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345 (352)
Q Consensus 286 ~~~~~~p~~~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~ 345 (352)
.+.|+.||..+||.||.+|+ +|++| ..|+.||..||+++|.+|++.|++++|.++|..+.
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777788888888887776 77777 77778888888888888888888888887776443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-47 Score=373.02 Aligned_cols=285 Identities=17% Similarity=0.229 Sum_probs=264.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC-----CchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP-----PTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEA 128 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~ 128 (352)
..+|+.|+..|++.|+++.|.++|+.|. ||..+|++++++|++.|+.+.+.++++.+. +||+||++
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999998774 789999999999999999888888887766 99999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK--YGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999976 678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|.++|++|.+.|+.|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHHhhc
Q 045379 287 GAGIEPDVYAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSV 347 (352)
Q Consensus 287 ~~~~~p~~~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~~~ 347 (352)
+.|+.||..+|+.+|.+|+ +|+.| ..++.||..+|++||.+|++.|++++|.++|..|...
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999998 89999 7889999999999999999999999999999866544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-46 Score=362.43 Aligned_cols=275 Identities=20% Similarity=0.296 Sum_probs=236.0
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhH--------------------
Q 045379 62 LSPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSC-------------------- 120 (352)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------- 120 (352)
...++|.|+.+|+++|++++|.++|++|+ ||.++||+++++|++.|+.+++..++..+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 34589999999999999999999999998 899999999999999998888877776652
Q ss_pred ------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045379 121 ------------------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAV 176 (352)
Q Consensus 121 ------------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 176 (352)
+||+||++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 568888888888888888888888865 6888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 045379 177 FREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK 256 (352)
Q Consensus 177 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 256 (352)
|++|.+.|+.||..||++++.+|++.|++++|.+++++|.+.|+.||..++|.||.+|++.|++++|.++|++|. +
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888885 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHH--hcCCCCCHHHHHHH
Q 045379 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRM--HMGCEPDRASYNIM 324 (352)
Q Consensus 257 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m--~~~~~p~~~~~~~l 324 (352)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+ +|+.| ..++.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 6888888888888888888888888888888888888888888888887 78888 35888888888888
Q ss_pred HHHHHHcCCcchhHHHHHHH
Q 045379 325 VDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 325 i~a~~~~g~~~~A~~~~~~~ 344 (352)
|++|++.|++++|.+++..+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC
Confidence 88888888888888887644
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-43 Score=352.77 Aligned_cols=294 Identities=20% Similarity=0.277 Sum_probs=201.3
Q ss_pred ccccccCccccccccccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHH
Q 045379 40 CGSLRGKGWKYGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLM 118 (352)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (352)
+.++|+.+.+.+ +.....++|+|+.+|+++|+++.|.++|++|+ +|.++||+++.+|.+.|+.+++..++..
T Consensus 206 ~~~~~~~~~~~g-------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 206 GREVHAHVVRFG-------FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred HHHHHHHHHHcC-------CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 457777777665 22233488999999999999999999999998 8999999999999888777666665554
Q ss_pred hH---------------------------------------------------------------------------HHH
Q 045379 119 SC---------------------------------------------------------------------------VSI 123 (352)
Q Consensus 119 ~~---------------------------------------------------------------------------~~~ 123 (352)
+. +||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 42 444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 203 (352)
++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------------------------
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC---------------------------- 255 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~---------------------------- 255 (352)
++++|.++|++|.+ +|..+||.+|.+|++.|+.++|+++|++|.. ++
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 55555555555542 2344444444444444444444444544432 23
Q ss_pred -------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045379 256 -------------------------------------KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYN 298 (352)
Q Consensus 256 -------------------------------------~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~ 298 (352)
+||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 3455667788888888999999999999999999999999999
Q ss_pred HHHHHHH----------HHHHH--hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHHh
Q 045379 299 ALMEAYR----------LISRM--HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345 (352)
Q Consensus 299 ~li~a~~----------~~~~m--~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~ 345 (352)
.+|.+|+ +|+.| ..|+.|+..+|++++++|++.|++++|.+++.-||
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9998887 88888 57899999999999999999999999999987554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=342.43 Aligned_cols=288 Identities=16% Similarity=0.223 Sum_probs=203.1
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCC-----CchhhHHHHHHHHHHHhhccCcchhhHHhH-----HHHHHHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLP-----PTHATWDDLINVSVQLRLNKKWDPIVLMSC-----VSILLIEAY 129 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~li~~~ 129 (352)
.....++++++.+|.+.|+++.|.+++..|. ||..+||.+++.|.+.|+.+.+.++++.+. +||++|.+|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 3345588999999999999999999997663 899999999999999998888888877665 999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--------------------
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA-------------------- 189 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------------------- 189 (352)
++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998888888777766655555555555555555555555544444
Q ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 045379 190 -----------VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258 (352)
Q Consensus 190 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 258 (352)
.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHHH
Q 045379 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVDA 327 (352)
Q Consensus 259 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~a 327 (352)
..+|+.||.+|++.|++++|.++|++|. .||..+||+||.+|+ +|++| ..|+.||..||+++|.+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5555555555555555555555555553 355566666665555 89999 88999999999999999
Q ss_pred HHHcCCcchhHHHHHHH-------hhccCCC
Q 045379 328 YGRAGLHEGKCSYSLVE-------LSVKHYP 351 (352)
Q Consensus 328 ~~~~g~~~~A~~~~~~~-------~~~~~y~ 351 (352)
|++.|++++|.++|..| |+..||.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999744 5555664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-42 Score=344.10 Aligned_cols=276 Identities=15% Similarity=0.184 Sum_probs=232.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhH---------------------
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------------------- 120 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 120 (352)
..++|+|+.+|+++|+++.|+++|++|+ ||..+||+++++|.+.|+.+.+..++..+.
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 3477999999999999999999999998 899999999999999888777766665542
Q ss_pred -----------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045379 121 -----------------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVF 177 (352)
Q Consensus 121 -----------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 177 (352)
+||+||.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 567888888888888888888888864 77888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045379 178 REMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257 (352)
Q Consensus 178 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 257 (352)
++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++|. .|
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~ 352 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TK 352 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888885 46
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHH
Q 045379 258 NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVD 326 (352)
Q Consensus 258 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~ 326 (352)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+ +++.| ..|+.|+..+|++||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 788888888888888888888888888888888888888888888876 77777 7788888888888888
Q ss_pred HHHHcCCcchhHHHHHHHhh
Q 045379 327 AYGRAGLHEGKCSYSLVELS 346 (352)
Q Consensus 327 a~~~~g~~~~A~~~~~~~~~ 346 (352)
+|++.|++++|.++|..++.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC
Confidence 88888888888888875543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1.8e-16 Score=145.17 Aligned_cols=268 Identities=16% Similarity=0.062 Sum_probs=210.7
Q ss_pred HHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHh------------HHHHHHHHHHHccC
Q 045379 70 LRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMS------------CVSILLIEAYGQKS 133 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~li~~~~~~g 133 (352)
...+...|++++|...|+++. .+..++..+...+...++.+.+..+++.. ..+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344567789999999998764 45667888888888777766655544332 26788899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCCHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS----AVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~ 209 (352)
++++|.++|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998753 34677999999999999999999999999988653332 224566778889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998763 33567888899999999999999999999987642223467889999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHH---cCCcchhHHHHH
Q 045379 290 IEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGR---AGLHEGKCSYSL 342 (352)
Q Consensus 290 ~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~---~g~~~~A~~~~~ 342 (352)
.|+...+..+...+. +++.+.. ..|+..++..++..+.. .|+.+++..+|.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLR-RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 466666666666554 5555511 26888899988888775 568999998886
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=2.4e-17 Score=150.97 Aligned_cols=270 Identities=14% Similarity=0.115 Sum_probs=216.6
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC--Cc------hhhHHHHHHHHHHHhhccCcchhhHHhH--------HH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLP--PT------HATWDDLINVSVQLRLNKKWDPIVLMSC--------VS 122 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~ 122 (352)
.|....++..+...|...|++++|..+++.+. ++ ...+..+...+...|+.+.+..++.... ++
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 34555678999999999999999999998764 11 2467788888888888777766665543 89
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTE----DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
+.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...++++.+.. +.+...+..+...
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 223 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHH
Confidence 99999999999999999999999886644322 245677788899999999999999998764 3456788889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|...++++.+. .|+...+..+...+.+.|++++|
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999987642223467889999999999999999999999876 46777778999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAYR-------------LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCS 339 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~~-------------~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~ 339 (352)
..+++++.+. .|+..+++.++..+. +++.| ..++.|++. ..|.++|..-+.+.
T Consensus 302 ~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~~~~ 368 (389)
T PRK11788 302 QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTARTLY 368 (389)
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCccce
Confidence 9999998876 689988887775432 57777 666666665 44777776665543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=2e-15 Score=152.06 Aligned_cols=219 Identities=13% Similarity=0.110 Sum_probs=125.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHcc
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQK 132 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~ 132 (352)
.+..++..|.+.|++++|..+++.+ +.+...|..+..++...++.+.+...+.... .+..+...+.+.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4455566666666666666665544 2445566666666666555554444443322 555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (352)
|++++|...|+++.+... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|
T Consensus 649 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655331 235556666666666666666666666665543 344455555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 213 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+++.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++.+.
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 6665542 333455555556666666666666665555432 334555555666666666666666666666544
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=3.9e-15 Score=150.03 Aligned_cols=271 Identities=15% Similarity=0.096 Sum_probs=159.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccC
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKS 133 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g 133 (352)
...++..+...|++++|.+.|+++ |.+..++..+...+...++.+.+...+.... .+..++..|.+.|
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 334444444444444444444433 1234444444444444444433333332221 4555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665432 3455667777777777777777777777766543 3345566666677777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|.++.+.+ |+
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~ 735 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS 735 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC
Confidence 766542 3345666677777777777777777777766553 3455566667777777777777777777776553 33
Q ss_pred HHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 294 VYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 294 ~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..++..+..++. .++.+....+.+...+..+...|...|++++|.+.|.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 344444444443 3444423345566677777777777777777777764
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.63 E-value=2e-12 Score=125.31 Aligned_cols=277 Identities=12% Similarity=0.001 Sum_probs=209.2
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLI 126 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li 126 (352)
.|........++......|+++.|...|+++ |.+...|..+...+...|+.+.+...+.... .+..+.
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la 151 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL 151 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3444456667777777899999999999876 3567788888888888887776666554443 788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
..+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+.+..-.++......+...+.+.|+++
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 99999999999999999887655433 3333333 347889999999999999877643344555666778889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM----ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
+|...+++..+.. +.+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+.+.|++++|...+
T Consensus 230 eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 4467888899999999999986 899999988753 345678999999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHH----------HHHHHhcCCCCCH-HHHHHHHHHHHHcCCcchhHHHHH
Q 045379 283 EQLQGAGIEPDV-YAYNALMEAYR----------LISRMHMGCEPDR-ASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 283 ~~m~~~~~~p~~-~~~~~li~a~~----------~~~~m~~~~~p~~-~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
++..+. .|+. ..+..+..++. .++.+... .|+. ..+..+..++...|+.++|.+.|.
T Consensus 308 ~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 308 QQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999875 3443 33444444443 55555211 3443 344456778999999999999986
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-12 Score=112.78 Aligned_cols=256 Identities=17% Similarity=0.148 Sum_probs=158.6
Q ss_pred HHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 045379 84 DAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTE 154 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 154 (352)
-+|+..|++..|+.+||.+.++....+++.+++.... +||.+|.+-.-..+ .++..+|....++||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 4556667777788888888777766666666655444 77777766443322 6788888888888888
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH----cCCCC---
Q 045379 155 DTYALLLKAYCMSGLLEK----AEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK-AVEIFQRMKR----DCCQP--- 222 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~~--- 222 (352)
.|+|.++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ |..++.+... +.++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 888888888888887765 45677788888888888888888888888777644 4444433322 22222
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------------------------HhCCCCCCH
Q 045379 223 -STETYTLMINLYGKASKSFMALKLFNEM------------------------------------------RSHKCKPNI 259 (352)
Q Consensus 223 -~~~~~~~li~~~~~~g~~~~a~~l~~~m------------------------------------------~~~g~~p~~ 259 (352)
|..-|...++.|.+..+.+-|.++-.-+ .-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 3344555566666665555555543333 222223555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------------------HH--H-------HH
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA----------------------YR--L-------IS 308 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a----------------------~~--~-------~~ 308 (352)
.+...++++..-.|+++-.-+++.++...|..-....-..++.- |. . -.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55666666666666666666666666554422211111111111 11 1 11
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 045379 309 RMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 309 ~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~ 344 (352)
+| ..........+.+.-.+.+.|..++|.++|..-
T Consensus 514 R~-r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 514 RQ-RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HH-HhccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 11 133456667788888999999999999998643
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.7e-11 Score=106.56 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=175.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|.+||.+.++--..+.|.++|++-.....+.+..+||.+|.+-.-... .+++.+|....+.||..|+|+++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 9999999999999999999999999988889999999999987654333 789999999999999999999999999
Q ss_pred cCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----HhCCCCC----CHHHHHHHHH
Q 045379 201 KGGNPQK----AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM-ALKLFNEM----RSHKCKP----NICTYTALVN 267 (352)
Q Consensus 201 ~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~l~~~m----~~~g~~p----~~~t~~~li~ 267 (352)
+.|+++. |.+++.+|++-|+.|+..+|..+|.-+++.++..+ |..++.++ ..+..+| |..-|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 56778899999999999999999999999999854 44444443 3333333 3445778889
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---C-CCCCH---HHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHHHHH
Q 045379 268 AFAREGLCEEAEEIFEQLQGA---G-IEPDV---YAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVDAYG 329 (352)
Q Consensus 268 ~~~~~g~~~~a~~l~~~m~~~---~-~~p~~---~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~a~~ 329 (352)
.|.+..+.+.|.++..-+... . +.|+. .-|..+..+.+ .++.| ..-.-|+..+...+++|..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 999999999999998877643 1 23332 12333333333 55566 5666789999999999999
Q ss_pred HcCCcchhHHHHHHHhh
Q 045379 330 RAGLHEGKCSYSLVELS 346 (352)
Q Consensus 330 ~~g~~~~A~~~~~~~~~ 346 (352)
..|+++-.-+++..+..
T Consensus 445 v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKE 461 (625)
T ss_pred hcCcchhHHHHHHHHHH
Confidence 99999988888764443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=4.1e-11 Score=116.23 Aligned_cols=270 Identities=10% Similarity=-0.017 Sum_probs=206.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCC
Q 045379 67 QQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSL 134 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~ 134 (352)
..++....+.|++++|..+++.. |.+...+..++.+....|+.+.+...++... .|..+...+.+.|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 45566677899999998887654 3455566666666666777766666655544 78889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
+++|...+++..+... .+...+..+...+...|++++|...++.+....-. +...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999987532 35668889999999999999999999988765432 33334333 347889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 045379 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEE----AEEIFEQLQGAGI 290 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----a~~l~~~m~~~~~ 290 (352)
+.+..-.++......+..++...|++++|+..+++..... +.+...+..+...+...|++++ |...|++..+.
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 8876433445556667788999999999999999998764 4457788889999999999986 89999998865
Q ss_pred CCC-HHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 291 EPD-VYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 291 ~p~-~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.|+ ...+..+...+. .++.....-+.+...+..+..+|.+.|++++|.+.|.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344 455555554444 5555522334567788889999999999999999986
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=2.7e-10 Score=110.38 Aligned_cols=272 Identities=12% Similarity=-0.005 Sum_probs=200.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCH
Q 045379 67 QQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLH 135 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~ 135 (352)
......|.+.|++++|+..|++.. |+...|..+..++...++.+.+........ +|..+..+|...|++
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 466778889999999999998643 778888888888888877655544433322 888899999999999
Q ss_pred HHHHHHHHHHHhCCC----------------------------C----CCHHHHHHHH----------------------
Q 045379 136 KKAEFTYLELLDSRC----------------------------I----PTEDTYALLL---------------------- 161 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~----------------------------~----p~~~~~~~li---------------------- 161 (352)
++|+.-|......+. . |.........
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 999876654332110 0 1111110000
Q ss_pred -----HHH------HHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045379 162 -----KAY------CMSGLLEKAEAVFREMRKYG-L-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT 228 (352)
Q Consensus 162 -----~~~------~~~g~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 228 (352)
..+ ...+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+.. +-+..+|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 000 12357889999999988765 2 3345678888889999999999999999998763 22466888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD-VYAYNALMEAYR-- 305 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~a~~-- 305 (352)
.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|++..+. .|+ ...+..+..++.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 99999999999999999999997763 345788999999999999999999999999875 343 344444333332
Q ss_pred --------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 306 --------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 306 --------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++......+-+...++.+..++...|++++|.+.|.
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555533445578899999999999999999999986
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=6.4e-13 Score=116.00 Aligned_cols=245 Identities=16% Similarity=0.104 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCHHHHHHHhcC-C----C-CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccC
Q 045379 68 QILRFVQREVDSNTIWDAFDS-L----P-PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKS 133 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~-~----~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g 133 (352)
.+...+.+.|++++|++++++ . + .|..-|..+...+...++.+.+..+++... .+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 557788899999999999953 2 2 345556666666666777766666655444 56666666 6889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (352)
++++|.+++....+.. +++..+...+..+.+.++++++.++++.+.+. ..+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999888776543 56677888888899999999999999987753 24567788888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 213 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
++..+.. +-|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc---
Confidence 9988862 2357788889999999999999888888876653 4455678888999999999999999999987541
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 293 DVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 293 ~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.|..+...+.+++...|+.++|.++..
T Consensus 245 ----------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 245 ----------------------PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp ----------------------TT-HHHHHHHHHHHT-------------
T ss_pred ----------------------cccccccccccccccccccccccccccc
Confidence 3488888999999999999999998864
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=8.5e-10 Score=106.98 Aligned_cols=217 Identities=13% Similarity=-0.011 Sum_probs=170.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
.|+.+...+...|++++|+..|++..+.. |+ ..+|..+...+...|++++|...|++..+.. +.+..++..+...+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 67777888889999999999999998754 44 6688899999999999999999999988763 45678899999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999998864 3467788889999999999999999999988652 345778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHH-------------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVY---AYNALM-------------EAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~---~~~~li-------------~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..|++..+..-..+.. ....+. .|...+++....-+.+...+..+...+.+.|++++|.++|.
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999987653211111 111111 11223444311223455678899999999999999999986
No 18
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.2e-13 Score=84.64 Aligned_cols=49 Identities=43% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 19
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=4.7e-13 Score=83.88 Aligned_cols=49 Identities=41% Similarity=0.775 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
||..+||++|++|++.|++++|.++|++|++.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=6.5e-10 Score=101.07 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=183.9
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHhH--------------
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMSC-------------- 120 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------- 120 (352)
.|.-...|..+...+-..|++++|+..+..+- ..+..|..+..++...|+...+-..+....
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 34445577888888888999999988876542 345566666666655554443333221111
Q ss_pred ----------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---
Q 045379 121 ----------------------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYALLLKAYCMSG--- 168 (352)
Q Consensus 121 ----------------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g--- 168 (352)
.|+.|...+-.+|+...|+.-|++..+-. |+ ...|-.|-..|...+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 66666666667777777777776665532 33 234555555555444
Q ss_pred -------------------------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 169 -------------------------------LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 169 -------------------------------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
+.|.|+..|++..+.. +--...|+.|..++-..|++.+|++.|.+.+.
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 4455555554444431 22357888999999999999999999988877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV-Y 295 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~ 295 (352)
.. +-...+.+.|-+.|...|.+++|..+|....+- .|. ...++.|...|-++|++++|...|++..+ +.|+- .
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 53 335678889999999999999999999877653 444 34688999999999999999999998874 45653 2
Q ss_pred HHHHHHHHHHHHHHH---------hcCCCCC-HHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 296 AYNALMEAYRLISRM---------HMGCEPD-RASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 296 ~~~~li~a~~~~~~m---------~~~~~p~-~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.|+.+-..|.....| .-.+.|. ...++.|...|-..|++.+|..-+.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 333333333311111 1234443 5678999999999999999998875
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=3.3e-09 Score=109.77 Aligned_cols=280 Identities=12% Similarity=0.016 Sum_probs=183.8
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHH-----------------
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLM----------------- 118 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------- 118 (352)
|.....+..+...|...|++++|++.|++.. .+...+..+...+.. ++.+++...+..
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 3444567788999999999999999998753 445556656555532 222222222211
Q ss_pred hHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 119 SCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
...+..+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 114555677788899999999999999876532 56678888899999999999999999987643 2233333333333
Q ss_pred HHcCCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHHHHHHHHHHHhcCC
Q 045379 199 LLKGGNPQKAVEIFQRMKRD---------------------------------------CCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~~~g~ 239 (352)
+...++.++|...++.+... ..+.+...+..+...+.+.|+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 44455555555544432111 124455666778888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----------HHH
Q 045379 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD-VYAYNALMEAYR----------LIS 308 (352)
Q Consensus 240 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~a~~----------~~~ 308 (352)
+++|++.|++..+.. +.+...+..+...|...|++++|.+.++.+.+. .|+ ......+..++. +++
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888887753 345778888888888889999999888877654 333 233333333332 566
Q ss_pred HH-hcC--CCC---CHHHHHHHHHHHHHcCCcchhHHHHHHHh
Q 045379 309 RM-HMG--CEP---DRASYNIMVDAYGRAGLHEGKCSYSLVEL 345 (352)
Q Consensus 309 ~m-~~~--~~p---~~~~~~~li~a~~~~g~~~~A~~~~~~~~ 345 (352)
.+ ... .+| +...+..+...+...|++++|++.|....
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65 221 122 33566677888888899999998887664
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.1e-09 Score=90.47 Aligned_cols=199 Identities=17% Similarity=0.055 Sum_probs=158.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 141 (352)
...+..+...|...|++++|...|++.. .++.. ...+..+...+...|++++|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----------------------~~~~~~la~~~~~~~~~~~A~~~ 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----------------------YLAYLALALYYQQLGELEKAEDS 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4467888899999999999998887642 11110 11566677888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 045379 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC 220 (352)
Q Consensus 142 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 220 (352)
+++..+... .+...+..+...+...|++++|.+.+++..+... +.....+..+...+...|++++|...+++..+..
T Consensus 88 ~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 165 (234)
T TIGR02521 88 FRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID- 165 (234)
T ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999987653 3567888888999999999999999999887532 2344567778888999999999999999988763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 335678888999999999999999999998776 345667777888888899999999998887764
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=2.3e-11 Score=106.15 Aligned_cols=224 Identities=15% Similarity=0.103 Sum_probs=115.6
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHh-------HHHHHHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMS-------CVSILLIEA 128 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~ 128 (352)
|.....+..+...+...|+.+.|...++++. .++..+..++.. ...++.+.+..+.+.. ..+..++..
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHH
Confidence 3333455667778888999999999999886 244556666666 4556666555544322 167788889
Q ss_pred HHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSR-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
+.+.|+++++.++++.+.... .+++...|..+...+.+.|++++|.+.+++..+.. |.+....+.++..+...|+.++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHH
Confidence 999999999999999987533 45678889999999999999999999999998863 3467888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+..+++...+.. +.|...+..+..+|...|+.++|...|++..... +.|......+..++...|+.++|.++..++.+
T Consensus 199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 199 AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 999999888764 4566778899999999999999999999988752 45788889999999999999999999887653
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=4.1e-09 Score=88.64 Aligned_cols=194 Identities=19% Similarity=0.116 Sum_probs=160.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 67778889999999999999999998754 2356788889999999999999999999998764 445678888899999
Q ss_pred cCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCC-QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
..|++++|...+++..+... +.....+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999987532 2245577778889999999999999999988753 335667888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+++..+. . +.+...+..+...+...|+.++|..+..
T Consensus 190 ~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 190 AYLERYQQT--Y-----------------------NQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHh--C-----------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999998764 1 2355556677788888899999988765
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=5.9e-09 Score=104.30 Aligned_cols=182 Identities=14% Similarity=0.058 Sum_probs=94.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.....+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 3455555555555554332 2233333444444555555555555555554432 122222222222333345555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
..+++..+. .|+...+..+..++.+.|++++|+..+++..... +-+...++.+..++...|+.++|...+++..+.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l- 672 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG- 672 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 555555443 2344455555555555555555555555554432 223334444444555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 290 IEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 290 ~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+-+...+..+..++...|++++|+..|.
T Consensus 673 ------------------------~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 ------------------------LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred ------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 23477788899999999999999998886
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=3.3e-09 Score=97.16 Aligned_cols=258 Identities=11% Similarity=0.058 Sum_probs=157.4
Q ss_pred cCCHHHHHHHhcCCCC---chh-hHHHHHHHHHHHhhccCcchhhHHhH-------HHH--HHHHHHHccCCHHHHHHHH
Q 045379 76 EVDSNTIWDAFDSLPP---THA-TWDDLINVSVQLRLNKKWDPIVLMSC-------VSI--LLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 76 ~g~~~~A~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~--~li~~~~~~g~~~~a~~l~ 142 (352)
.|+++.|.+.+...+. ++. .+........+.|+.+.+...+.... .+- .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4777777777766542 122 22222333345555555555544433 111 2245677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA-------VVYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 143 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
+++.+..+ -++..+..+...|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 88877653 25667778888888888888888888888876544322 23334444444444555566666655
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045379 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVY 295 (352)
Q Consensus 216 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 295 (352)
.+. .+.+......+...+...|+.++|.+++++..+. .|+.. -.++.+....++.+++++..++..+. .|+..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~ 328 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTP 328 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCH
Confidence 432 2345666667777777777777777777766653 34442 11233334457777777777766654 33333
Q ss_pred H-HHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 296 A-YNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 296 ~-~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
. ...+-..+. .|+..- ...|+..++..+..++.+.|+.++|.+++.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 323333332 444441 237899999999999999999999999986
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=3.5e-09 Score=109.60 Aligned_cols=216 Identities=14% Similarity=0.022 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccC
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKS 133 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g 133 (352)
+..+...+...|++++|+..|++. |.++..+..+...+...|+.+.+...++... .+..+...+.+.|
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 445677788899999999998865 3456677778888888888777776665543 4444555677889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 045379 134 LHKKAEFTYLELLDSRCIPTED---------TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 204 (352)
+.++|...++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 9999999998876433222221 233456778889999999999872 35566778889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
+++|...|++..+.. +.+...+..+...|...|++++|++.++...+.. +.+..++..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999998863 4468899999999999999999999999887642 23455677788889999999999999999
Q ss_pred HHHC
Q 045379 285 LQGA 288 (352)
Q Consensus 285 m~~~ 288 (352)
+...
T Consensus 697 al~~ 700 (1157)
T PRK11447 697 LIPQ 700 (1157)
T ss_pred Hhhh
Confidence 9865
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4e-10 Score=103.20 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=96.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS---YI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---li 196 (352)
+|.++.+.|.-+++.+.|++.|++..+.+ | ...+|+.+-.=+.....+|.|...|+.... .+...||+ +-
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLG 496 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhh
Confidence 44444444444455555544444444321 2 333444444444444444444444444322 22233332 23
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
-.|.++++++.|+-.|++..+.+ +-+.+....+...+-+.|+.++|++++++.....- -|+..--.....+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchH
Confidence 33444444444544444444432 12333333444444444444455544444433321 12222222233333444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHHhhccC
Q 045379 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVELSVKH 349 (352)
Q Consensus 277 ~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~~~~~ 349 (352)
+|++.+++++ .-++-+..+|..+...|.+.|+.+.|+.-|.++.+++.
T Consensus 575 eal~~LEeLk-------------------------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 575 EALQELEELK-------------------------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHH-------------------------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 4444444444 33455778888899999999999999999987766553
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.24 E-value=5e-08 Score=96.77 Aligned_cols=281 Identities=11% Similarity=0.004 Sum_probs=177.1
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH-------HHHHHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC-------VSILLIEA 128 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~ 128 (352)
|...+.+..+..++.+.|++++|..+|++. |.+...+..+...+...++...+...+.... .+..+...
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~ 125 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYV 125 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334446788888899999999998888873 3456667777777777777766665555433 26677778
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFR------------------------------ 178 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~------------------------------ 178 (352)
+...|+.++|+..+++..+..+. +...+..+..++...|+.+.|.+.++
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 88889999999999888875532 44455555666655566554443333
Q ss_pred ----------------HHHHC-CCCCCHH-HHH----HHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 045379 179 ----------------EMRKY-GLPPSAV-VYN----SYIDGLLKGGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYG 235 (352)
Q Consensus 179 ----------------~m~~~-g~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 235 (352)
.+.+. ...|+.. .+. ..+..+...|++++|...|+++.+.+-+ |+. .--.+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 33322 1112111 111 1123445668888899999888876532 322 2222466888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHH---HHH
Q 045379 236 KASKSFMALKLFNEMRSHKCKP---NICTYTALVNAFAREGLCEEAEEIFEQLQGAG-----------IEPDVY---AYN 298 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~-----------~~p~~~---~~~ 298 (352)
..|++++|+..|+++....-.. .......+..++...|++++|.++++.+.+.. -.|+.. .+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 8889999999888876542111 13456667777888889999988888887642 112321 111
Q ss_pred HHH----------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 299 ALM----------EAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 299 ~li----------~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+. .|..+++++....+.+...+..+...+...|+.++|++.+.
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122 12225555544445667777788888888888888888775
No 30
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2.2e-09 Score=98.79 Aligned_cols=232 Identities=17% Similarity=0.075 Sum_probs=167.8
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC-----------Cchh-hHHHHHHHHHHHhhccCcchhhHHhH--
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP-----------PTHA-TWDDLINVSVQLRLNKKWDPIVLMSC-- 120 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-- 120 (352)
.+..+|....+...|..+|...|+++.|..++.... +.+. ..+.+...|...++..++..+++...
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345566666677789999999999999988886432 1111 12223344444454444444333322
Q ss_pred --------------HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 045379 121 --------------VSILLIEAYGQKSLHKKAEFTYLELLDS-----RCI-PTED-TYALLLKAYCMSGLLEKAEAVFRE 179 (352)
Q Consensus 121 --------------~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~~-p~~~-~~~~li~~~~~~g~~~~a~~~~~~ 179 (352)
+++.|...|.+.|++++|...++...+- |.. |.+. .++.+...|...+++++|..++..
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 8888999999999999998888776541 222 3333 567788889999999999999887
Q ss_pred HHHC-----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 180 MRKY-----G--LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC-------CQPSTETYTLMINLYGKASKSFMALK 245 (352)
Q Consensus 180 m~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (352)
..+. | .+....+++.|-..|...|++++|+.+|++..+.. ..-....++.|-..|.+.+++++|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 6542 1 11235789999999999999999999999876531 22234578889999999999999999
Q ss_pred HHHHHHh----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 246 LFNEMRS----HKC--KPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 246 l~~~m~~----~g~--~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|.+-.. .|. +-...+|..|...|.+.|++++|.++...+.
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9987543 222 2234689999999999999999999998876
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.20 E-value=6.8e-08 Score=95.83 Aligned_cols=278 Identities=11% Similarity=-0.041 Sum_probs=181.6
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHH
Q 045379 62 LSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAY 129 (352)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~ 129 (352)
.......++..+...|++++|...+++. |.+.. |..+..++...++...+...+.... .+..+...+
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3345566777777778888877777654 23455 6666666666666555554444333 334444445
Q ss_pred HccCCHH----------------------------------------------HHHHHHHHHHhC-CCCCCHH-HH----
Q 045379 130 GQKSLHK----------------------------------------------KAEFTYLELLDS-RCIPTED-TY---- 157 (352)
Q Consensus 130 ~~~g~~~----------------------------------------------~a~~l~~~m~~~-~~~p~~~-~~---- 157 (352)
...|..+ +|++.++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 161 RNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred HHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 4444444 444455555432 1122221 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 045379 158 ALLLKAYCMSGLLEKAEAVFREMRKYGLP-PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP---STETYTLMINL 233 (352)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~ 233 (352)
...+.++...|++++|...|+.+.+.+-+ |+. .-..+...|...|++++|+..|+++.+..-.. .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 11134456779999999999999987632 332 22235778999999999999999987653111 13456677778
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHK-----------CKPN---ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNA 299 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g-----------~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 299 (352)
+...|++++|.++++.+.... -.|+ ...+..+...+...|+.++|.++++++.... .-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 899999999999999997652 1133 2345677788999999999999999998652 223445555
Q ss_pred HHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 300 LMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 300 li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+...+. .++....-.+.+...+..+...+.+.|++++|..++.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 554443 5555533334467888888889999999999999985
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.18 E-value=3.7e-08 Score=90.22 Aligned_cols=215 Identities=8% Similarity=0.009 Sum_probs=161.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYA--LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
|-....+..+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|...++++.+.. +-+......+...|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~ 197 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3333455588999999999999998743 5544333 34678889999999999999998875 55678899999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPST-------ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 272 (352)
.+.|+|++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+..++...
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHC
Confidence 9999999999999999988655322 23344455455556667777777776543 245778889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH--------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALM--------EAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 273 g~~~~a~~l~~~m~~~~~~p~~~~~~~li--------~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
|+.++|.+++.+..+. .|+........ .+....+...+..+-|...+.++...|.+.|++++|.+.|.
T Consensus 277 g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 277 DDHDTAQQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999874 45553222111 12225555555556788889999999999999999999996
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=1.7e-10 Score=108.45 Aligned_cols=196 Identities=19% Similarity=0.172 Sum_probs=129.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------------------------CCCCHHHHHHHH
Q 045379 141 TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG------------------------LPPSAVVYNSYI 196 (352)
Q Consensus 141 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~~~~~~~~~li 196 (352)
++..+...|+.|+.+||..+|.-||..|+.+.|- +|..|+-+. -.|...||..|+
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 3445555666666666666666666666666655 555554221 146789999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHH-------cCC-----------------CCCHHHHHHHHHHHHhcCCHHHHHHHH-----
Q 045379 197 DGLLKGGNPQKAVEIFQRMKR-------DCC-----------------QPSTETYTLMINLYGKASKSFMALKLF----- 247 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~-------~~~-----------------~~~~~~~~~li~~~~~~g~~~~a~~l~----- 247 (352)
.+|...|++..-..+=+.|.. .|+ -||.. +.+.-....|.|+.+++++
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999997652222222321 221 12221 1122222223333333333
Q ss_pred -----------HH-------------HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 248 -----------NE-------------MRSHKC-KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302 (352)
Q Consensus 248 -----------~~-------------m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 302 (352)
++ |.+.++ .|++.+|..++..-..+|+++.|..++.+|.+.|+..+.+-|..++-
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 11 111122 48999999999999999999999999999999999999999999884
Q ss_pred HHH-------HHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHHH
Q 045379 303 AYR-------LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSY 340 (352)
Q Consensus 303 a~~-------~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~~ 340 (352)
+-. +.+.| +.|+.|+.+|+..-+-.+..+|....+.+.
T Consensus 248 g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 248 GINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred cCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 422 77778 999999999999999998887776655544
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.18 E-value=2.8e-08 Score=91.45 Aligned_cols=263 Identities=12% Similarity=0.017 Sum_probs=168.8
Q ss_pred hcCCHHHHHHHhcCCC---Cch-hhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHHHHccCCHHHHHHH
Q 045379 75 REVDSNTIWDAFDSLP---PTH-ATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~a~~l 141 (352)
..|+++.|.+.+.+.. |++ ..+-....++.+.|+.+.+...+.... .--.....+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 5689999988887665 332 233333445556666666666555432 222246677778999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHc
Q 045379 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL---LKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 142 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~ 218 (352)
++.+.+..+ -++..+..+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+++.+.+..+.+.
T Consensus 176 l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999988763 256688889999999999999999999999887543322212112222 2222333333444444443
Q ss_pred C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 219 C---CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT---YTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 219 ~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.+++..+. .|
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 1 1137788888888999999999999999988875 344332 122222233457788888888777654 34
Q ss_pred CHH--HH-HHHHHHH----------HHHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 293 DVY--AY-NALMEAY----------RLISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 293 ~~~--~~-~~li~a~----------~~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.. .+ .++-..+ ..|+.. .....|+...+..+...+.+.|+.++|.+++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 433 22 2222222 255542 33347888889999999999999999999886
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.18 E-value=2.2e-08 Score=100.31 Aligned_cols=219 Identities=8% Similarity=-0.058 Sum_probs=168.6
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHH--HHHHhhccCcchhhHHhH-------HHHHHHHHH
Q 045379 62 LSPTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINV--SVQLRLNKKWDPIVLMSC-------VSILLIEAY 129 (352)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~-------~~~~li~~~ 129 (352)
....+..+...+.. |+.++|...|.+.. |+ .++.+..+ +...|+.+.+...++... .+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd--~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD--AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 44567777777776 78888988665432 44 33433333 345566555555444322 466677888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
.+.|++++|.+.+++..+... ++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987652 23334444445555679999999999999875 457889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..|++..+.. +.+...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++..+.
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998874 4467788888899999999999999999998763 346678999999999999999999999999865
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=4.4e-07 Score=89.36 Aligned_cols=147 Identities=7% Similarity=0.043 Sum_probs=105.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-----CKPNICTYTALVNAFA 270 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~t~~~li~~~~ 270 (352)
+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+.... ..++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34566778888888888888887766556677888899999999999999999886532 1234444678889999
Q ss_pred hcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHH-HHH----------HHHHHHhcCCCCCHHHHHHHHH
Q 045379 271 REGLCEEAEEIFEQLQGAG-------------IEPDVYAYNALM-EAY----------RLISRMHMGCEPDRASYNIMVD 326 (352)
Q Consensus 271 ~~g~~~~a~~l~~~m~~~~-------------~~p~~~~~~~li-~a~----------~~~~~m~~~~~p~~~~~~~li~ 326 (352)
.++++++|..+++++.+.. ..||-..+..+. ..+ ..++.+....+-|......+.+
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999988631 123333333222 111 1666665555668888888888
Q ss_pred HHHHcCCcchhHHHHH
Q 045379 327 AYGRAGLHEGKCSYSL 342 (352)
Q Consensus 327 a~~~~g~~~~A~~~~~ 342 (352)
.+...|+..+|++.+.
T Consensus 459 v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 459 IYLARDLPRKAEQELK 474 (822)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 8888888888888875
No 37
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.14 E-value=3.6e-09 Score=96.36 Aligned_cols=162 Identities=18% Similarity=0.173 Sum_probs=107.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.||.|..++-..|++.+|.+.|.+...... --..+.+.|..++..+|.+++|..+|....+- .+--...+|.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHH
Confidence 677777777777777777777776665321 13446677777777777777777777666553 1222455677777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a 278 (352)
.+|++++|...|++.+.- .|+ ..+++.+-+.|-..|+.+.|.+.+.+.... .|. ...++.|.+.|-.+|++.+|
T Consensus 400 qqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 777777777777776653 444 356777777777777777777777766654 343 34577777777777777777
Q ss_pred HHHHHHHHHC
Q 045379 279 EEIFEQLQGA 288 (352)
Q Consensus 279 ~~l~~~m~~~ 288 (352)
.+-|++..+.
T Consensus 476 I~sY~~aLkl 485 (966)
T KOG4626|consen 476 IQSYRTALKL 485 (966)
T ss_pred HHHHHHHHcc
Confidence 7777776653
No 38
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=6.3e-08 Score=89.32 Aligned_cols=222 Identities=18% Similarity=0.140 Sum_probs=161.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS-----RC-IPTEDT-YALLLKAYCMSGLLEKAEAVFREMRKY-------GLP 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~ 186 (352)
+...|...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... ..+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 6666999999999999999999988764 21 244443 344778899999999999999998652 233
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR---D--CC-QPST-ETYTLMINLYGKASKSFMALKLFNEMRSH---KCK 256 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--~~-~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~ 256 (352)
-...+++.|..+|.+.|++++|...+++..+ . |. .|.+ ..++.+...|+..+++++|..+++...+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 3467788888899999999999888877543 1 11 2222 34677888999999999999999876442 111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHH-----------------HHH
Q 045379 257 PN----ICTYTALVNAFAREGLCEEAEEIFEQLQGA----GI--EPD-VYAYNALMEAYR-----------------LIS 308 (352)
Q Consensus 257 p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~----~~--~p~-~~~~~~li~a~~-----------------~~~ 308 (352)
++ ..+++.|-..|-+.|++++|.++|++.... +- .+. ...++.+-.+|. +..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 347999999999999999999999988643 12 222 233444444443 221
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 309 RMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 309 ~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
....+.+-...+|..|..+|.+.|++|+|.++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1133444567889999999999999999999875
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=9.6e-08 Score=80.79 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=173.1
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLPP-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (352)
|.+....-+|-+.|.+.|.+++|+++-+.+.. ...|++-=+. ..-.|..=|...|-++.|
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l-------------------Al~qL~~Dym~aGl~DRA 126 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL-------------------ALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH-------------------HHHHHHHHHHHhhhhhHH
Confidence 34444555666666666666666666665531 1123322111 334455668888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS----AVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
..+|..+.+.+. --.....-|+..|-...+|+.|.++-+++.+.+-.+. ..-|-.+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887543 2455788889999999999999999998887765443 34466777888888899999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
..+.+ +-++..--.+-..+...|+++.|.+.++...+.+...-..+...|..+|.+.|+.++....+.++.+....++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 87764 22455555677888899999999999999988866666677888999999999999999999988876444443
Q ss_pred HH--HHHHHHHHH-------HHHHHhcCCCCCHHHHHHHHHHHHHc
Q 045379 295 YA--YNALMEAYR-------LISRMHMGCEPDRASYNIMVDAYGRA 331 (352)
Q Consensus 295 ~~--~~~li~a~~-------~~~~m~~~~~p~~~~~~~li~a~~~~ 331 (352)
.. +..+..--+ +.+++ .-+|+...+..||+.-...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql--~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQL--RRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHH--hhCCcHHHHHHHHHhhhcc
Confidence 32 222211111 33333 2378999999998875443
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=9.6e-08 Score=91.32 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=109.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
.+++++|...+++..+.+. -+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3557888888888887553 256677777778888888888888888887764 44566777788888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 212 FQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 212 ~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+++..+.. |+ ...+..++..+...|++++|+..+++..... .| +...+..+..++...|+.++|.+.+.++...
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 88887763 33 2333344445666788888888888876543 23 3445666777788888888888888876544
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.9e-07 Score=78.00 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=172.5
Q ss_pred CCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--
Q 045379 77 VDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-- 153 (352)
Q Consensus 77 g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-- 153 (352)
...++|.+.|-.|. .|+.|+. +--+|.+-|.+.|..+.|+++...+.++---+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e-----------------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q 105 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFE-----------------------AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ 105 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhH-----------------------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH
Confidence 45677887777665 4555554 556677889999999999999999987621111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHH
Q 045379 154 -EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS----TETYT 228 (352)
Q Consensus 154 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~ 228 (352)
....-.|..-|...|-+|.|+.+|..+.+.+. .-......|+..|-...+|++|.++-+++.+.+-.+. ..-|.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 12455677788999999999999999988653 3446788899999999999999999999988654443 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR--- 305 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~--- 305 (352)
-|...+....+.+.|..++.+..+.. +-.+..--.+-+.....|+++.|.+.++...+.+..--..+...|..+|.
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 78888888899999999999988763 22233344556788899999999999999998876666778888888887
Q ss_pred -------HH-HHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHH
Q 045379 306 -------LI-SRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 306 -------~~-~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
.+ +.|+. .++...-..+-+.-....-.+.|..++
T Consensus 264 ~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 264 KPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred CHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHH
Confidence 22 23322 334444444444434444455665554
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=3.2e-07 Score=79.79 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=147.5
Q ss_pred cCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHHHHccCCHHHHHHHH
Q 045379 76 EVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 76 ~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~a~~l~ 142 (352)
.|++.+|++...+-. .....|..-..+..++|+.+.++..+.... ..-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 589999988886643 234455555666667777776666654433 5666667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA-------VVYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 143 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
+++.+.+.. .+........+|.+.|++..+..+...|.+.|.-.+. .+|+.++.=....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 888876653 5667788888888888888888888888877654332 33444444333333333322333332
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------------------------------HHHHHHH
Q 045379 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN------------------------------ICTYTAL 265 (352)
Q Consensus 216 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~------------------------------~~t~~~l 265 (352)
..+ .+-++..-..++.-+.+.|+.++|.++.++-.+++..|+ +..+.+|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 221 122233333444444555555555555554444433332 2344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 266 VNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 266 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
-..|.+++.|.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+.+.
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~--------------------------~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALK--------------------------LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--------------------------cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 5555555555555555554433 37899999999999999999999998875
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.05 E-value=6.7e-07 Score=88.09 Aligned_cols=272 Identities=13% Similarity=0.072 Sum_probs=190.7
Q ss_pred HHHHHhcCCHHHHHHHhcCCC---Cch-hhHHHHHHHHHHHhhccCcchhhHHhH------HHHHH--HHHHHccCCHHH
Q 045379 70 LRFVQREVDSNTIWDAFDSLP---PTH-ATWDDLINVSVQLRLNKKWDPIVLMSC------VSILL--IEAYGQKSLHKK 137 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~l--i~~~~~~g~~~~ 137 (352)
+-...+.|+++.|+..|++.. |+. .....++..+...|+...+....+.+. .+..+ ...|...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334468999999999998765 432 122377777777777766666555543 33333 568888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
|.++|+++.+.... ++..+..++..+...++.++|++.++.+.+. .|+...+-.++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999987643 4667778889999999999999999999876 45556665555555556777679999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------------------------------------------------
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNE------------------------------------------------ 249 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~------------------------------------------------ 249 (352)
.. +-+...+..++.+..+.|-...|.++..+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 73 33566666666666666655554444432
Q ss_pred HHh-CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHH-h-
Q 045379 250 MRS-HKCKPNI-----CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRM-H- 311 (352)
Q Consensus 250 m~~-~g~~p~~-----~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m-~- 311 (352)
+.. .+-.|.. ...--.+-++...|++.++.+.|+.|...+......+-.++.++|. +++.+ .
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 221 1111321 1122345567788999999999999998887656667788888877 77776 2
Q ss_pred cC----CCCCHHHHHHHHHHHHHcCCcchhHHHHHHHh
Q 045379 312 MG----CEPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345 (352)
Q Consensus 312 ~~----~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~ 345 (352)
.+ ..++......|.-+|..+|++++|..++.-+.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 21 23355556889999999999999999987443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.7e-08 Score=84.40 Aligned_cols=279 Identities=13% Similarity=0.048 Sum_probs=202.8
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC-------CchhhHHHHHHHHHHHhhcc-CcchhhHHhH----HH
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP-------PTHATWDDLINVSVQLRLNK-KWDPIVLMSC----VS 122 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~----~~ 122 (352)
.+-.+|...-+-+..........|++.|+.+|+.+. .|..+|..++-+-....+.. .+..+...-. |.
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETC 333 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETC 333 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccce
Confidence 344466555566777778888999999999999874 36667776665432211110 1111111111 88
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
.++.+.|+-.++.++|...|+...+-+.. ....|+.+-+-|....+...|.+-++...+-. +-|-..|-.|-.+|.-.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHh
Confidence 88899999999999999999999986542 56688889999999999999999999998873 56778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
+.+.-|+-.|++..+-. +-|...|.+|-.+|.+.++.++|++.|......|- .+...+..|...|-+.++.++|.+.|
T Consensus 412 ~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred cchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999988753 45889999999999999999999999999987763 36688999999999999999999999
Q ss_pred HHHHHC----CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 283 EQLQGA----GIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 283 ~~m~~~----~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+-.+. |. .+..|..+.+---..|..|. --.-...|.+....+ .-..+||..++.
T Consensus 490 ek~v~~~~~eg~-~~~~t~ka~~fLA~~f~k~~--~~~~As~Ya~~~~~~--~~e~eeak~LlR 548 (559)
T KOG1155|consen 490 EKYVEVSELEGE-IDDETIKARLFLAEYFKKMK--DFDEASYYATLVLKG--ETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHhhcc-cchHHHHHHHHHHHHHHhhc--chHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 887652 32 33344443333222333331 011233334433333 556677777764
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.02 E-value=2.7e-07 Score=84.93 Aligned_cols=217 Identities=12% Similarity=-0.001 Sum_probs=144.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|...++.+.+.. |-+..+...+...|..
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444456677889999999999888764432332344445777788899999999999988875 4566788888889999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH---HhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETY-TLMINLY---GKASKSFMALKLFNEMRSHK---CKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~---~~~g~~~~a~~l~~~m~~~g---~~p~~~t~~~li~~~~~~g~ 274 (352)
.|++++|.+.+..+.+.++.+ ...+ ..-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~ 278 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD 278 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 999999999999998886543 3323 1111222 22233333333444443321 12377888899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-----HHHHHHH--------HHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCcchhHH
Q 045379 275 CEEAEEIFEQLQGAGIEPDVY-----AYNALME--------AYRLISRMHMGCEPDR--ASYNIMVDAYGRAGLHEGKCS 339 (352)
Q Consensus 275 ~~~a~~l~~~m~~~~~~p~~~-----~~~~li~--------a~~~~~~m~~~~~p~~--~~~~~li~a~~~~g~~~~A~~ 339 (352)
.++|.+++++..+. .||.. .+..... +...++......+-|. ....++...|.+.|++++|.+
T Consensus 279 ~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 279 HDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred hHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 99999999999876 34433 1211111 1113333333333344 677899999999999999999
Q ss_pred HHH
Q 045379 340 YSL 342 (352)
Q Consensus 340 ~~~ 342 (352)
.|.
T Consensus 357 ~le 359 (409)
T TIGR00540 357 AFK 359 (409)
T ss_pred HHH
Confidence 987
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=4.7e-08 Score=82.76 Aligned_cols=217 Identities=15% Similarity=0.077 Sum_probs=167.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
+-+..+|.+.|.+.+|.+-++...++. |-+.||..|-..|.+..++..|+.++.+-.+. .+-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 567888999999999999998888754 67778888999999999999999999887765 334444445677788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
++.++|.++++...+.. +.++...-.+...|.-.++++-|+..++++.+.|+. +...|+.+--+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988763 456777888888899999999999999999998864 7778999999999999999999999
Q ss_pred HHHHHCCCCCCHH---HHHH---------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 045379 283 EQLQGAGIEPDVY---AYNA---------LMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 283 ~~m~~~~~~p~~~---~~~~---------li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~ 344 (352)
.+....--.|+.. =||. +.-|-..|+.-...-.-+.+.++.|.-.-.+.|++++|..++.-.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 8887543333321 1221 111112344333334557889999999999999999999999733
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=98.96 E-value=4.8e-07 Score=86.55 Aligned_cols=206 Identities=12% Similarity=-0.015 Sum_probs=147.1
Q ss_pred CCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccC------cchhhHHhH-----------HHHHHHHHHHccCCH
Q 045379 77 VDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKK------WDPIVLMSC-----------VSILLIEAYGQKSLH 135 (352)
Q Consensus 77 g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~-----------~~~~li~~~~~~g~~ 135 (352)
+++++|...|++.. .+...|..+..++...+..+. ..++..... +|..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 34567777776542 355667666666554443221 122222222 788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
++|...|++..+.+. .+...+..+..++...|++++|...+++..+..-. +...+..++..+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999998653 24668888899999999999999999999886422 2233334455567789999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 216 KRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC-TYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 216 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+...+-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...|...| ++|...++.+.+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87642335566788888999999999999999987654 34433 4555556677777 5888888877653
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.4e-06 Score=76.46 Aligned_cols=206 Identities=17% Similarity=0.067 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 134 LHKKAEFTYLELLDSR-CIPT--EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
..+.++.-+.++.... ..|+ ...|..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555554554321 1111 2345555555555566666666655555542 2344555555556666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
.|++..+.. +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 666555432 113445555555555566666666666555543 2222111111112233445566666554433221
Q ss_pred CCCHHHHHHHHHHHH-------HHHHHhcCC-------CCCHHHHHHHHHHHHHcCCcchhHHHHHHHh
Q 045379 291 EPDVYAYNALMEAYR-------LISRMHMGC-------EPDRASYNIMVDAYGRAGLHEGKCSYSLVEL 345 (352)
Q Consensus 291 ~p~~~~~~~li~a~~-------~~~~m~~~~-------~p~~~~~~~li~a~~~~g~~~~A~~~~~~~~ 345 (352)
.|+...+ .+...+. .++.+..++ +.....|..+...+.+.|++++|...|....
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred CccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1211111 1111100 222221111 1234678999999999999999999997443
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.92 E-value=4.3e-07 Score=86.21 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=124.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC-----CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP-----PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAE 139 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 139 (352)
+|.+++.-|+..|+++.|- +|.-|. -+...|+.++.+....++.+..++-.. ++|..|..+|...||...-.
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~a--Dtyt~Ll~ayr~hGDli~fe 103 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLA--DTYTNLLKAYRIHGDLILFE 103 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCch--hHHHHHHHHHHhccchHHHH
Confidence 7899999999999999998 887665 356778888888777777777664433 39999999999999876522
Q ss_pred HHHHHHHh-------CCC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Q 045379 140 FTYLELLD-------SRC-----------------IPTEDTYALLLKAYCMSGLLEKAEAVFREM--------------- 180 (352)
Q Consensus 140 ~l~~~m~~-------~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--------------- 180 (352)
.+=+.|.. .|+ .||..+ ++....-.|.|+.+.+++..+
T Consensus 104 ~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrq 180 (1088)
T KOG4318|consen 104 VVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQ 180 (1088)
T ss_pred HHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHH
Confidence 21111211 121 122221 111122233344443333221
Q ss_pred -H-------------HCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 181 -R-------------KYGL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALK 245 (352)
Q Consensus 181 -~-------------~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (352)
. +.+. .|+..+|..++++-..+|+.+.|..++.+|++.|++.+..-|..|+-+ .++..-++.
T Consensus 181 nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~ 257 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEF 257 (1088)
T ss_pred hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHH
Confidence 1 1111 356666666666666667777777777777777766666666666555 566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 246 LFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 246 l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
++..|.+.|+.|+..|+..-+-.+..+|+
T Consensus 258 vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 258 VLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666777777666666665555444
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.1e-07 Score=80.66 Aligned_cols=219 Identities=14% Similarity=0.037 Sum_probs=156.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhH-------HH-HHHHHHHHccCCH
Q 045379 67 QQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSC-------VS-ILLIEAYGQKSLH 135 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~-~~li~~~~~~g~~ 135 (352)
+.+...|-+.|.+.+|.+-|+... |.+.||-.+-++|.+..+...+..++..-. || .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 777888888888888888887543 677788777777777666655444332211 22 2344556667788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
++|.++|+...+... .++.+..++...|.-.++++.|+..|+++.+.|+ .+...|+.+--+|.-.+++|-++.-|++.
T Consensus 307 ~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 888888888776542 3566777777778888888888888888888876 45677777777777888888888888877
Q ss_pred HHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 216 KRDCCQPS--TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 216 ~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
...-..|+ ..+|-.|-...+..|++..|.+.|+-..... .-+...+|.|.-.-.+.|++++|..+++.....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66443343 3457777777777888888888888776553 335667888888788889999999888887654
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.6e-07 Score=81.60 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=132.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH------------------------------------HHcCCH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAY------------------------------------CMSGLL 170 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~------------------------------------~~~g~~ 170 (352)
..+.++|+++.|.++++-+.+..-+.-...-+.|-..+ ...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 34778999999999998877654322111111111111 234678
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 171 EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 171 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
+.|.+.|++.....-.-+...||.=+ .+-..|++++|+..|-++..- +.-+..+.-.+.+.|-...+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888877655433444455433 356788899999888776542 1225666677777888888888888887766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHH
Q 045379 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRAS 320 (352)
Q Consensus 251 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~ 320 (352)
... ++-|+...+-|...|-+.|+-..|.+.+-+--+ -+..+..|...|-.-|. +|++ ..-+.|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHH
Confidence 543 455667777788888888887777776644322 13345555555444333 2222 2345788888
Q ss_pred HHHHHHH-HHHcCCcchhHHHHH
Q 045379 321 YNIMVDA-YGRAGLHEGKCSYSL 342 (352)
Q Consensus 321 ~~~li~a-~~~~g~~~~A~~~~~ 342 (352)
|..+|.. +.+.|++.+|++++.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHH
Confidence 8777664 456788888888775
No 52
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=5e-09 Score=59.21 Aligned_cols=32 Identities=31% Similarity=0.872 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 254 KCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 254 g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
|++||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 53
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=4.8e-09 Score=59.25 Aligned_cols=32 Identities=41% Similarity=0.679 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
|+.||..|||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=2.2e-06 Score=74.69 Aligned_cols=212 Identities=16% Similarity=0.072 Sum_probs=125.6
Q ss_pred HHHHHhcCCHHHHHHHhcCCC-----CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHH
Q 045379 70 LRFVQREVDSNTIWDAFDSLP-----PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHK 136 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~ 136 (352)
+.+....||.+.+-..+.+.. ++....-+........++...+..-+.... +-.....+|.+.|++.
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHH
Confidence 344556677777766665442 122233333333333333332222222111 5566667777777777
Q ss_pred HHHHHHHHHHhCCCCCCH-------HHHHHHH----------------------------------HHHHHcCCHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTE-------DTYALLL----------------------------------KAYCMSGLLEKAEA 175 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~-------~~~~~li----------------------------------~~~~~~g~~~~a~~ 175 (352)
++..++..|.+.|.--++ .+|..++ .-+.+.|+.++|.+
T Consensus 205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 777777777666543222 1344444 44445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 045379 176 VFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255 (352)
Q Consensus 176 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 255 (352)
+..+..+++..|+...+ -.+.+-++.+.-.+..++-.+. ++-++-.+.+|-.-|.+++.|.+|...|+...+.
T Consensus 285 ~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-- 357 (400)
T COG3071 285 IIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-- 357 (400)
T ss_pred HHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--
Confidence 55555555444431111 1223334444444443332221 2334466788899999999999999999977665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 256 ~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.|+..+|+.+..++.+.|+.++|.+++++....
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 799999999999999999999999999987643
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=6.6e-06 Score=66.75 Aligned_cols=178 Identities=17% Similarity=0.071 Sum_probs=146.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+..-|.-+|.+.|++..|.+-+++.++.... +..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 6667788899999999999999999986632 55699999999999999999999999988763 446678888888999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQP-STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
.+|++++|.+.|++......-+ -..+|.++.-+..+.|+.+.|...|++-.+.. +-...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988764333 34689999999999999999999999988764 223456778888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALME 302 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~ 302 (352)
..++.....+. ++..+....|+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHH
Confidence 99999887765 66666555553
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.79 E-value=9.8e-06 Score=77.43 Aligned_cols=270 Identities=13% Similarity=0.076 Sum_probs=164.2
Q ss_pred HHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHh--------HHHHHHHHHHHccCCHHHH
Q 045379 71 RFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMS--------CVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a 138 (352)
....-.|++++|.+++.++ |.+...|-+|..+|.+.|+.+++....-.. .-|-.+.+...+.|.++.|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3334459999999888765 468889999999999988665433322111 1677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------------
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL--------------------------------- 185 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------------------------- 185 (352)
.-.|.+..+..+ ++...+-.-+..|-+.|+...|...|.++.+..-
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776543 3444555556666677777777766666655421
Q ss_pred -------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHH
Q 045379 186 -------PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC---------------------------CQPSTETYTLMI 231 (352)
Q Consensus 186 -------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~~~~~~~~~li 231 (352)
..+...++.++..|.+..+++.|......+.... ..++...+ -++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 1223334455555555555555555544444311 11122221 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKC--KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR---- 305 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~---- 305 (352)
-++......+....+...+.+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+-+.|-
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 222333333333333333343332 23344677888899999999999999999987754555666666666665
Q ss_pred ------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 306 ------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 306 ------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++..-.-.+-+...-..|-..+-+.|+.|+|.+.+.
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 3333322234466667778888999999999999876
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.9e-06 Score=76.21 Aligned_cols=197 Identities=19% Similarity=0.187 Sum_probs=129.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
-.|++++|.+.|++.+...-.-+...||+ --.+-..|++++|+++|-.+... +..+..+.-.+.+.|-...+...|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 35788888888888876443333333333 33456678888888887666443 22345555666667777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
++.+.... ++.|+....-|...|-+.|+-..|.+..-+-... .+-+..|..+|...|....-++++.++|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 77665543 3446667777777777777777776655443322 355666777777777777777777777776542 4
Q ss_pred CCCHHHHHHHHHHHH-----------HHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 045379 291 EPDVYAYNALMEAYR-----------LISRMHMGCEPDRASYNIMVDAYGRAGL 333 (352)
Q Consensus 291 ~p~~~~~~~li~a~~-----------~~~~m~~~~~p~~~~~~~li~a~~~~g~ 333 (352)
.|+..-|..+|..|. +++..+..++-|.....-|++.+...|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 677777777775554 5555566777788888888888877774
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=8e-06 Score=66.30 Aligned_cols=198 Identities=14% Similarity=0.015 Sum_probs=163.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
+.-.|.-.|-..|+...|..-+++.. .|+..+. +|..+...|-+.|..+.|.+.|+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~-----------------------a~~~~A~~Yq~~Ge~~~A~e~Yr 93 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL-----------------------AHLVRAHYYQKLGENDLADESYR 93 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-----------------------HHHHHHHHHHHcCChhhHHHHHH
Confidence 44677888999999999999888754 4544443 78888899999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
+....... +....|+--.-+|.+|++++|...|++.... ...--..+|..+.-+..+.|+.+.|...|++-.+.. +-
T Consensus 94 kAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~ 171 (250)
T COG3063 94 KALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQ 171 (250)
T ss_pred HHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cC
Confidence 99875532 5668889999999999999999999998775 233335788899999999999999999999988763 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
...+.-.+.....+.|++-.|...++.....+. ++..+.-..|..--..|+-+.+-+.=.++.+.
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345677788888999999999999999887765 89999988999989999999988888887754
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.77 E-value=4e-06 Score=80.61 Aligned_cols=279 Identities=12% Similarity=0.058 Sum_probs=168.0
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC--------Cchh-------hHHHHHHHHHHHhhccCcchhhHHh
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP--------PTHA-------TWDDLINVSVQLRLNKKWDPIVLMS 119 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~ 119 (352)
.....+.-+.+.|++.......|+++.|...|+... ++.. -|| +..+....++...+++++...
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHH
Confidence 445555444588999999999999999998886432 2221 232 333444455555555555443
Q ss_pred H-HHHHHHHHHHcc-------CCHHHHHHHHHHHHhCC-----------------------------------CCCCHHH
Q 045379 120 C-VSILLIEAYGQK-------SLHKKAEFTYLELLDSR-----------------------------------CIPTEDT 156 (352)
Q Consensus 120 ~-~~~~li~~~~~~-------g~~~~a~~l~~~m~~~~-----------------------------------~~p~~~~ 156 (352)
. -+-..|++|.+. +...+|...++...+.. ..+|+.+
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 3 222233333333 34455555555544321 1234444
Q ss_pred HHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 045379 157 YALLLKAYCM------------SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST 224 (352)
Q Consensus 157 ~~~li~~~~~------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 224 (352)
...|-+.|.+ .+..+.|+++|.+..+.. +-|...-|-+--.++..|++++|..+|.++.+... -..
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCC
Confidence 4444444432 234566777777766653 45666667777777888888888888888887643 244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRSH-KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a 303 (352)
.+|-.+..+|..+|++..|+++|+...+. .-+-+....+.|.+++-+.|.+.+|.+...........-...-||..+-.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 57778888888888888888888876543 33456667788888888888888888888777766544455566665544
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 304 YRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 304 ~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+-......-+++..-.... .+..++|.++|.
T Consensus 761 kkla~s~lr~~k~t~eev~~a------~~~le~a~r~F~ 793 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEA------VKELEEARRLFT 793 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHH------HHHHHHHHHHHH
Confidence 443333322223333322222 234566666665
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=6e-07 Score=82.82 Aligned_cols=241 Identities=13% Similarity=0.028 Sum_probs=188.3
Q ss_pred cccCccccccccccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCC---------------------------------
Q 045379 43 LRGKGWKYGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSL--------------------------------- 89 (352)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------------------------- 89 (352)
.+..++..... ....++.+..+...+..+|.+.+++++|.++|+.+
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444434 45566777778899999999999999999999744
Q ss_pred -----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-
Q 045379 90 -----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED- 155 (352)
Q Consensus 90 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~- 155 (352)
+..+.+|-.+.++|...++.+.+-+.++... +|+.+.+-+.....+|.|...|+.... +|+.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchh
Confidence 2367888888888888888776666655444 888888889999999999999998876 4444
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 156 --TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 156 --~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
.|-.+...|.++++++.|+-.|+...+.+ +-+.+....+...+-+.|+.|+|++++++.....-+ |+-+--.-...
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 55567888999999999999999998864 345667777888899999999999999998765433 44444455667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
+...+++++|+..++++++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+...++
T Consensus 567 l~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 77889999999999999875 455 4567888899999999999999888887654333
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=8.1e-06 Score=71.73 Aligned_cols=192 Identities=13% Similarity=-0.002 Sum_probs=128.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 141 (352)
.+..+...|.+.|+.+.|...|++.. |+. ...|+.+...+...|++++|.+.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-------------------------~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDM-------------------------ADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555666666677777766655431 111 11678888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 045379 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 142 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 221 (352)
|+...+.... +..+|..+..++...|++++|.+.++...+.. |+..........+...+++++|...|++..... .
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 9999875422 46688888899999999999999999988753 433222222333456778999999997755432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSH---KC--K-PNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~--~-p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
|+...+ .+ .....|+..++ +.+..+.+. .. . .....|..+...+.+.|++++|...|++..+.+
T Consensus 197 ~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 332222 22 23335555444 344444421 11 1 123578999999999999999999999998765
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=2.2e-05 Score=73.41 Aligned_cols=238 Identities=17% Similarity=0.125 Sum_probs=119.6
Q ss_pred HHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 71 RFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
..+...|++++|++.+++.. .|..+ ........+.+.|+.++|..+|..+.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~-------------------------~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLA-------------------------VLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578899999999998654 23333 345556778888999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHH-Hc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCC
Q 045379 148 SRCIPTEDTYALLLKAYC-MS-----GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP-QKAVEIFQRMKRDCC 220 (352)
Q Consensus 148 ~~~~p~~~~~~~li~~~~-~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~ 220 (352)
.+ |+...|...+..+. -. .+.+...++++++.+.- |.......+.-.+.....+ ..+..++..+..+|+
T Consensus 67 rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 67 RN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 76 55555544444443 22 24666777777775542 2222221111111111111 123333344444444
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSH----K----------CKPNIC--TYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
++ +|+.|-..|....+.+-..+++...... + -.|+.. ++..+...|-..|++++|++++++
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 3444444444333333333333333211 0 112222 223333444445555555555555
Q ss_pred HHHCCCCCCH-HHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 285 LQGAGIEPDV-YAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 285 m~~~~~~p~~-~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+. .|+. ..|..-.+.+. .++....--.-|...=+-.+..+.++|++++|.+++.
T Consensus 220 aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 220 AIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4443 2331 11211111111 1111111113366666777888999999999999875
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.1e-06 Score=73.32 Aligned_cols=210 Identities=16% Similarity=0.133 Sum_probs=119.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL--PPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~ 204 (352)
.++-...+.+++..=.......|++-+...-+-...+.-.+.++|+|+.+|++..+... -.|..+|..++- .+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 33444456666666666666666654444444444555567788888888888877621 124555655543 22222
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
-..+.-...-..-. +--+.|+.++.+-|+-.++.++|...|+...+.+ +-....|+.+-+-|....+...|.+-++.
T Consensus 313 skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11111111111111 2234455666666777777777777777776653 22344566666777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 285 LQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 285 m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++-. +.|-..|--+-++|. .|++...--+-|+..|.+|.+.|.+.++.++|.+.|.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76532 234455555555555 3444432234467777777777777777777777764
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=6.9e-06 Score=69.67 Aligned_cols=166 Identities=18% Similarity=0.105 Sum_probs=124.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PT-EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-PS-AVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~li 196 (352)
.+-.+...+.+.|++++|...|+++...... |. ..++..+..++...|++++|...++++.+..-. |. ..++..+-
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 5666777889999999999999999875421 11 247788889999999999999999999875321 11 12444455
Q ss_pred HHHHcC--------CCHHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHHH
Q 045379 197 DGLLKG--------GNPQKAVEIFQRMKRDCCQPS-TETY-----------------TLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 197 ~~~~~~--------g~~~~a~~~~~~m~~~~~~~~-~~~~-----------------~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.++... |++++|.+.|+++.+.. |+ ...+ -.+...|.+.|++++|...+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555544 78899999999998763 33 2221 13456678899999999999998
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 251 RSHK--CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 251 ~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.... .+.....+..+..++.+.|++++|..+++.+...
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7652 1234578899999999999999999999988754
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.9e-05 Score=69.29 Aligned_cols=246 Identities=13% Similarity=-0.003 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHcc
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQK 132 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~ 132 (352)
+...-++-+..++++++..++++.+ |.+...+..=|.++...|+....-.+-..+. +|-++.-.|.-.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3445566677788999987776654 4555555555566666665433222211111 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C-CCCCHHHHHHHHHHHHcCCCHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRKY--G-LPPSAVVYNSYIDGLLKGGNPQKA 208 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~g~~~~a 208 (352)
|..++|.+.|.+....+ |+ ...|.....+++-.|..|+|...+...-+. | ..|. .|. --=|.+.++.+.|
T Consensus 326 ~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYl--gmey~~t~n~kLA 399 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYL--GMEYMRTNNLKLA 399 (611)
T ss_pred cCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHH--HHHHHHhccHHHH
Confidence 99999999998776532 43 348999999999999999999998877653 2 2332 222 2236778999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 209 VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH----K--CKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 209 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g--~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
.++|.+..... +.|+...+-+--.....+.+.+|..+|+..... + ..-...+++.|-.+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887652 557778888888888889999999999887521 1 1124457899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 283 EQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 283 ~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
++..... +-+..++.++.-.|...|+++.|.+.|+
T Consensus 479 q~aL~l~-------------------------~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 479 QKALLLS-------------------------PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHcC-------------------------CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 9887541 3366666666666666666666666665
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=4.4e-06 Score=72.72 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=113.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHcC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID----GLLKG 202 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~ 202 (352)
..+...|++++|++++..- .+.......+..+.+.+++|.|.+.++.|.+.+ .| .+...+.. .+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4566789999999887643 467788888999999999999999999998753 34 33333333 33345
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC-EEAEEI 281 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~l 281 (352)
+.+++|..+|+++.+. ..++..+.|.+..++...|++++|++++.+..... +-+..+...++-.....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 5799999999998765 56788999999999999999999999999976554 34566788888888888887 778888
Q ss_pred HHHHHHC
Q 045379 282 FEQLQGA 288 (352)
Q Consensus 282 ~~~m~~~ 288 (352)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 8888754
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2e-05 Score=76.26 Aligned_cols=242 Identities=14% Similarity=0.072 Sum_probs=187.4
Q ss_pred HHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH---HHHHHHHHHHccCCHHHHHHHHHH
Q 045379 68 QILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC---VSILLIEAYGQKSLHKKAEFTYLE 144 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~ 144 (352)
.+...+...+-+++|..+|++..-+....+.++.-.....+ +.+..+.+. +|+.+..+-.+.|.+.+|.+-|-+
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldR---A~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDR---AYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHH---HHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 34455566677888888888877666666666654433333 333333333 999999999999999999887754
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 045379 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST 224 (352)
Q Consensus 145 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 224 (352)
. -|+..|..+++.+.+.|.|++-.+.+...++..-.|.+ =+.||-+|++.+++.+.+.++. -|+.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence 3 47889999999999999999999999888888776754 4578999999999887766542 4788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~ 304 (352)
.-...+-.-|...|.++.|.-++... .-|..|...+...|++..|...-++. -+..||..+-.||
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 88888888899999999887777643 45888888899999999887765553 4778999999888
Q ss_pred H-----HHHHH-hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 305 R-----LISRM-HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 305 ~-----~~~~m-~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
. -+.+| .-++.....-..-||.-|-..|-++|-..++.
T Consensus 1260 vd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1260 VDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 7 44555 66667778888899999999999999888875
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3e-05 Score=69.55 Aligned_cols=207 Identities=13% Similarity=0.052 Sum_probs=147.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
.|+...|..-|+...+....++ ..|.-+..+|....+.++.++.|+...+.+ +-+..+|..--..+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 5667777777777766443322 227777778888888999999998887764 34566777777777777889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIE 291 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 291 (352)
|++.++.. +-+...|-.+-.+..+.+++++++..|++..+. .+--+..|+.....+..+++++.|.+.|+...+....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99888753 225566777777777889999999999999865 4555678999999999999999999999988754211
Q ss_pred -----CCHHH--HHHHH---------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 292 -----PDVYA--YNALM---------EAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 292 -----p~~~~--~~~li---------~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+..+ -.+++ .|..++++.-.--+-....|..|...-.+.|+.++|+++|.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11111 11111 22223333311223356679999999999999999999996
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=0.00014 Score=65.77 Aligned_cols=255 Identities=11% Similarity=-0.076 Sum_probs=142.8
Q ss_pred HHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhc-cCcchhhHHhH-----------HHHHHHHHHHccC
Q 045379 70 LRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLN-KKWDPIVLMSC-----------VSILLIEAYGQKS 133 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-----------~~~~li~~~~~~g 133 (352)
...+...|++++|...+++. |.+...+.. ...+...+.. +.......... ....+...+...|
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC
Confidence 44556789999998877653 445545443 2222222221 11111111111 3344556778889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHcCCCHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-PPSA--VVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~ 210 (352)
++++|.+.+++..+... .+...+..+..++...|++++|...+++..+..- .|+. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999988887653 3466778888888889999999998888766422 2232 345567788888899999999
Q ss_pred HHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 211 IFQRMKRDCC-QPSTETY-T--LMINLYGKASKSFMALKL---FNEMRSHKC-KPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 211 ~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~l---~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
++++...... .+..... + .++.-+...|....+.+. ...-..... ............++...|+.++|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9988754321 1222211 1 223333344433322222 111111100 111122235667777888888898888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 283 EQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 283 ~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+......++..-+ .......-....-++...|+.++|.+.+.
T Consensus 288 ~~l~~~~~~~~~~~~----------------~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 288 AALKGRASSADDNKQ----------------PARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHHHHhccCchhh----------------hHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888654222110000 00112222334445678899999988875
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=0.00018 Score=65.00 Aligned_cols=212 Identities=13% Similarity=-0.016 Sum_probs=136.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
..+...|++++|.+.+++..+..+ .+...+.. ...+.. .+..+.+.+.+.. .....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345678999999999999887542 23444442 223333 3455555555544 1122223344555667788899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC-KPNI--CTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~a~ 279 (352)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998874 44567888899999999999999999998876431 2333 24557888899999999999
Q ss_pred HHHHHHHHCCC-CCCHHHH-HH--HHHHHH---------HHHHH-hc--C-C--CCCHHHHHHHHHHHHHcCCcchhHHH
Q 045379 280 EIFEQLQGAGI-EPDVYAY-NA--LMEAYR---------LISRM-HM--G-C--EPDRASYNIMVDAYGRAGLHEGKCSY 340 (352)
Q Consensus 280 ~l~~~m~~~~~-~p~~~~~-~~--li~a~~---------~~~~m-~~--~-~--~p~~~~~~~li~a~~~~g~~~~A~~~ 340 (352)
.++++...... .+..... +. ++.-+. -++.+ .. . . ............++...|+.++|.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999864322 2222221 21 111111 22222 11 1 1 11122223677888999999999998
Q ss_pred HH
Q 045379 341 SL 342 (352)
Q Consensus 341 ~~ 342 (352)
+.
T Consensus 287 L~ 288 (355)
T cd05804 287 LA 288 (355)
T ss_pred HH
Confidence 85
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=0.00068 Score=63.24 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcC----CCCchhhHHHHHHHHHHHhhccCcchhhHHhH--------------------
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDS----LPPTHATWDDLINVSVQLRLNKKWDPIVLMSC-------------------- 120 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------- 120 (352)
....|..+|++.--++.|.+++.+ +|.+...|.+....=..+|+...+++++..-.
T Consensus 408 ~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 408 QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 334556666676777778777754 45677778766665555555555444432211
Q ss_pred ------------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 045379 121 ------------------------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLL 170 (352)
Q Consensus 121 ------------------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 170 (352)
+|+.-...|.+.+.++-|..+|....+--. .+...|......=-..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcH
Confidence 777777777777777777777776665321 1333444333333334444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 171 EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 171 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
+....++.+.... ++-....|-...+-+...|+...|..++.+..+.. +-+...|-+-+..-....++++|..+|.+.
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5555555444433 22222333333344444444444444444444332 113334444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------C--CCCCHHHHH
Q 045379 251 RSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA------------------------------G--IEPDVYAYN 298 (352)
Q Consensus 251 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~------------------------------~--~~p~~~~~~ 298 (352)
... .|+...|.--++.---.++.++|.+++++..+. | .-|+..-.-
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 332 334444433333333344444444444433322 0 112221111
Q ss_pred HH-----------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 299 AL-----------MEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 299 ~l-----------i~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+ +.|=.+++.-...-+-|...|-..|..=.+.|+.+.|..++.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 122225555533345688889999999999999999987764
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.3e-05 Score=68.63 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=181.0
Q ss_pred cCcchhHHHHHHHHHhcCCHHH----HHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNT----IWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIE 127 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~ 127 (352)
|-..+.+..=|..+.+.|+..+ +.++-+.-|..+.+|-++.--|...++..++...+.... .|-....
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 3344455455556667776655 355556667788999999888887787777777665554 8999999
Q ss_pred HHHccCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 045379 128 AYGQKSLHKKAEFTYLELLDS--R-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~~--~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 204 (352)
.|+-.|..++|...|...-+- | ..|. --+---|.+.+..+.|.++|.+.... .|.|+.+.+.+--.....+.
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEE 429 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhh
Confidence 999999999999988766542 2 1232 22334577889999999999998776 35677888888777778899
Q ss_pred HHHHHHHHHHHHHc--C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 205 PQKAVEIFQRMKRD--C----CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 205 ~~~a~~~~~~m~~~--~----~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
+.+|...|+..++. . ...-..+++.|-.+|.+.+.+++|+..+++..... +-+..++.++.-.|...|+++.|
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHH
Confidence 99999999887631 0 11134568999999999999999999999987653 56888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAY 304 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~ 304 (352)
...|.+.. .+.|+-.+...++..+
T Consensus 509 id~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 509 IDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHH--hcCCccHHHHHHHHHH
Confidence 99999876 4588887777777544
No 73
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.52 E-value=0.00014 Score=69.88 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=164.4
Q ss_pred HhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045379 106 LRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVF 177 (352)
Q Consensus 106 ~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 177 (352)
.|+.+.+.++..... .|.+|...|-+.|+.+++...+-..-.-+. -|..-|..+-....++|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 366666665554433 899999999999999988877654443332 35678888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 178 REMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST----ETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 178 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
.+..+.. +++...+-.-...|-+.|+...|..-|.++.+..-+.|. ...-..+..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9988874 455555555667788899999999999998876322222 22334566677778888888888887652
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHHH
Q 045379 254 -KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG---------------------------IEPDVYAYNALMEAYR 305 (352)
Q Consensus 254 -g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~---------------------------~~p~~~~~~~li~a~~ 305 (352)
+-..+...++.++..|.+..+++.|......+.... +.++...+..++.-..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 234556678899999999999999999988887622 2223333222221111
Q ss_pred ---------HHHHH-hcC--CCCCHHHHHHHHHHHHHcCCcchhHHHHHH
Q 045379 306 ---------LISRM-HMG--CEPDRASYNIMVDAYGRAGLHEGKCSYSLV 343 (352)
Q Consensus 306 ---------~~~~m-~~~--~~p~~~~~~~li~a~~~~g~~~~A~~~~~~ 343 (352)
+.... ... ..-+...|.-+.++|...|++++|+++|.-
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33333 334 333677788889999999999999999863
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.49 E-value=0.00036 Score=65.45 Aligned_cols=261 Identities=15% Similarity=0.076 Sum_probs=166.6
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC---C-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHcc--
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLP---P-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQK-- 132 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 132 (352)
.++...+....+..+.+.|+.++|..++..+- | |..-|..+..+......... +..-.....|..+..-|-++
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~-~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD-EDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc-ccHHHHHHHHHHHHHhCccccc
Confidence 44445577899999999999999988876653 3 43344444444322221000 01111111333333333221
Q ss_pred -----------CCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C----------CC
Q 045379 133 -----------SLHK-KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY----G----------LP 186 (352)
Q Consensus 133 -----------g~~~-~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~ 186 (352)
..+. .+...+..+...|++ .+|+.|-..|....+.+-..+++...... + -+
T Consensus 113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~ 189 (517)
T PF12569_consen 113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEP 189 (517)
T ss_pred hhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCC
Confidence 2222 344455566677764 34666666666666666666666665432 1 23
Q ss_pred CCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 045379 187 PSA--VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263 (352)
Q Consensus 187 ~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 263 (352)
|+. .++..+...|-..|++++|..++++.++. .|+ +..|..-...+-..|++++|.+.++...... .-|...-+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 444 45567788889999999999999998886 565 5678888899999999999999999988764 34667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 264 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
-....+.++|++++|.+++....+.+..|- ..|.++=+.| -......+|.+.|++..|++.|+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~----~~L~~mQc~W------------f~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPL----SNLNDMQCMW------------FETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcc----cCHHHHHHHH------------HHHHHHHHHHHHhhHHHHHHHHH
Confidence 788889999999999999999987665331 1111111100 01244678888899999988875
No 75
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=6.3e-05 Score=75.20 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=154.9
Q ss_pred CCchhhHHHHHHHHHHHhhccCcchhhHHhH-------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HH
Q 045379 90 PPTHATWDDLINVSVQLRLNKKWDPIVLMSC-------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-ED 155 (352)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~ 155 (352)
|.....|-..+....+....+.+.++.+... .|.++++.-..-|.-+...++|++..+. .| -.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 3445667777777766666665555544332 8888888777778889999999998875 34 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP---STETYTLMIN 232 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~ 232 (352)
.|..|...|.+.+++++|.++++.|.+. +.-...+|...+..+.++.+-+.|..++.+..+. -| ......-.+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7888999999999999999999999876 3367789999999999999999999999987764 23 2444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 233 LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
.-.+.|+.+++..+|+.....- +--...|+..|+.=.++|+.+.+..+|++....++.|-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 6678999999999999987652 33556899999999999999999999999998877663
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.44 E-value=0.00029 Score=68.28 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=93.8
Q ss_pred HHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHh-hccCcchhhHHhH-----------HHHHHHHHHHcc
Q 045379 69 ILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLR-LNKKWDPIVLMSC-----------VSILLIEAYGQK 132 (352)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-----------~~~~li~~~~~~ 132 (352)
|..+|.+.|+++.+...|+++ |.+..+...+...|+..+ .....+.+...+. .|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 444455555555554444433 234556666666666552 2222222222111 555555555444
Q ss_pred CCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHH
Q 045379 133 SLHKKAEFTYLEL----LDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY---GLP------PSAVVYNSYIDGL 199 (352)
Q Consensus 133 g~~~~a~~l~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~------~~~~~~~~li~~~ 199 (352)
.-+. ++..|... ...+..+.+...|.+.......|.+..|...|+..... ... +++.+--.+...+
T Consensus 428 d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3333 35555433 34455577788888888888888888888888877654 111 2222222344445
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTE-TYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
-..++.+.|...|....+. .|.-. .|--+....-..+...+|...+.+...
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 5556777777777776654 23322 222222222233445555555555443
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00015 Score=61.27 Aligned_cols=267 Identities=15% Similarity=0.058 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH----------HHHHHHHHHHcc
Q 045379 67 QQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC----------VSILLIEAYGQK 132 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~ 132 (352)
++.+-.+.+..++++|++++..- |++..-.+.+..+|-...+...+-..++... .|. ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~--AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ--AQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH--HHHHHHh
Confidence 45666667888899998888543 3466677777777777666655544444332 222 3456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC--MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
+.+.+|+++...|.+. |+...-..=+.+.. +.+++..+..++++....| +..+.+..-....+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8899999999888763 33333333333333 4677778888888765433 34455555555678899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCHH--------HHHHHHHH-
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK-------------PNIC--------TYTALVNA- 268 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-------------p~~~--------t~~~li~~- 268 (352)
-|+...+-+---....||..+. ..+.|+.+.|++...++.+.|++ ||.. .-+.++.+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9998877443334667877664 45668999999999999887653 3322 12333333
Q ss_pred ------HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH--HH-------HHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 045379 269 ------FAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALM--EA-------YRLISRMHMGCEPDRASYNIMVDAYGRAG 332 (352)
Q Consensus 269 ------~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li--~a-------~~~~~~m~~~~~p~~~~~~~li~a~~~~g 332 (352)
+.+.|+++.|.+.+.+|--+ ....|+.|.+.+. ++ +.-+.-+..--+-..+||..++-.||++.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 45788999999999888533 3456777766544 21 11222221112346789999999999999
Q ss_pred CcchhHHHHH
Q 045379 333 LHEGKCSYSL 342 (352)
Q Consensus 333 ~~~~A~~~~~ 342 (352)
-++-|.+++.
T Consensus 325 yf~lAADvLA 334 (459)
T KOG4340|consen 325 YFDLAADVLA 334 (459)
T ss_pred HHhHHHHHHh
Confidence 9999998874
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00028 Score=62.23 Aligned_cols=254 Identities=13% Similarity=0.019 Sum_probs=150.5
Q ss_pred cCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhH-----------HHHHH
Q 045379 58 IFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSC-----------VSILL 125 (352)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~l 125 (352)
-+|+.......+...+...|+.++|...|++.. -|+.+...|-.-..-.++.+..+..-..+. -|-.-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 355666688899999999999999999999876 444444433222222222222222211111 23333
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
.......++++.|+.+-++..+... .+...|..=-..+...|++++|.-.|+..+.-. +-+...|.-|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 3444456677777777776665432 234455444556667788888887777766542 34567888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMI-NLYGKASK-SFMALKLFNEMRSHKCKPNI-CTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~-~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
.+|...-++..+. ++-+..+.+.+- ..|..... -++|.++++.-... .|+- ...+.+...|...|..+++..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 8877766654432 123444444441 22222222 25666666654433 4442 34556666777778888888777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 283 EQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 283 ~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+..... .||....+.|.+.+...+.+.+|.+.|.
T Consensus 462 e~~L~~--------------------------~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 462 EKHLII--------------------------FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHhh--------------------------ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 776543 4556666666666666666666666665
No 79
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=6e-07 Score=51.11 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT 153 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 153 (352)
+||++|++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=0.00034 Score=57.50 Aligned_cols=168 Identities=12% Similarity=0.169 Sum_probs=111.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+-.|...|+++.+......+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788888776555433322 11 01112555666666666665553 56778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINL-YGKASK--SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
++|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.. +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887764 3366777777765 356676 488888888888764 335667788888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q 045379 283 EQLQGAGIEPDVYAYNALMEAYRLISRM 310 (352)
Q Consensus 283 ~~m~~~~~~p~~~~~~~li~a~~~~~~m 310 (352)
+++.+.. .|+..-+ .+|+.....+.|
T Consensus 168 ~~aL~l~-~~~~~r~-~~i~~i~~a~~~ 193 (198)
T PRK10370 168 QKVLDLN-SPRVNRT-QLVESINMAKLL 193 (198)
T ss_pred HHHHhhC-CCCccHH-HHHHHHHHHHHH
Confidence 8887653 3333333 333544444443
No 81
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.34 E-value=9.5e-07 Score=50.24 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 258 (352)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555544444444
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=1.9e-05 Score=68.71 Aligned_cols=208 Identities=17% Similarity=0.120 Sum_probs=114.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP-SAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 199 (352)
.---+.+++.-.|+++.++ .++.... .|.......+...+...++-+.+..-+++.......+ +....-.....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4455667777777766543 3333332 5666665555444443344444444443333333222 222333333455
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR----EGLC 275 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~ 275 (352)
...|++++|++++.+- .+....-..+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+++
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 6678888888877653 256677777888888888888888888887652 33 344445554443 3367
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCc-chhHHHHH
Q 045379 276 EEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLH-EGKCSYSL 342 (352)
Q Consensus 276 ~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~-~~A~~~~~ 342 (352)
.+|..+|+++.+. ..+++.+.+.+..+.. ++.+.-..-+-+..+...+|-+....|+. +.+.+++.
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8888888887654 4456666665543333 33333112234566777777777777777 34445554
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=0.00011 Score=62.18 Aligned_cols=169 Identities=14% Similarity=0.018 Sum_probs=122.2
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCCC---Cc-hhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHH
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSLP---PT-HATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHK 136 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 136 (352)
......-.+...+.+.|+++.|...|+++. |+ ..... ++..+...+.+.|+++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-----------------------a~~~la~~~~~~~~~~ 87 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQ-----------------------AQLDLAYAYYKSGDYA 87 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHH-----------------------HHHHHHHHHHhcCCHH
Confidence 334466777888889999999999887653 22 11111 4566678889999999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHH--------------
Q 045379 137 KAEFTYLELLDSRCIPTE--DTYALLLKAYCMS--------GLLEKAEAVFREMRKYGLPPSAVVY-------------- 192 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~-------------- 192 (352)
+|...++++.+....... .++..+-.++... |++++|.+.++.+.+..- -+...+
T Consensus 88 ~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 88 EAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred HHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHHHHHHHH
Confidence 999999999875532121 2455555556554 788999999999887532 121111
Q ss_pred ---HHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 193 ---NSYIDGLLKGGNPQKAVEIFQRMKRDC--CQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 193 ---~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
-.+...|.+.|++++|...+++..+.. .+.....+..+..++...|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 134567888999999999999998762 1234578999999999999999999999988754
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=0.00021 Score=71.62 Aligned_cols=219 Identities=12% Similarity=0.134 Sum_probs=165.4
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCCC---------chhhHHHHHHHHHHHhhccCcchhhHHhH-------HHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLPP---------THATWDDLINVSVQLRLNKKWDPIVLMSC-------VSI 123 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~ 123 (352)
|-.+-.+-.-|......++++.|++++++..+ -...|.++++.-...|..+...++++... +|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 33333445557777788999999999987642 34578888888777776655555555444 888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS---AVVYNSYIDGLL 200 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~ 200 (352)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.++.+-+.|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 9999999999999999999999964 2257779999999999999999999999998764 222 233444555566
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI--CTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a 278 (352)
+.|+.+.+..+|+.+...- +--...|+..|..-.++|+.+.+..+|++....++.|-- ..|..-+..=-..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8899999999999988763 335778999999999999999999999999998776654 2455555544455665444
Q ss_pred HHHH
Q 045379 279 EEIF 282 (352)
Q Consensus 279 ~~l~ 282 (352)
..+=
T Consensus 1691 E~VK 1694 (1710)
T KOG1070|consen 1691 EYVK 1694 (1710)
T ss_pred HHHH
Confidence 4443
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.0003 Score=68.43 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
.++..+..|.....+.|+.++|+.+++...+.. +.+......+...+.+.+++++|...+++..... +-+....+.+-
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 457777777777778888888888887777752 3345566677777777888888888888777763 33455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHH
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM----EAYRLI 307 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li----~a~~~~ 307 (352)
.++.+.|++++|..+|++.... .+-+..++..+-.++-..|+.++|...|++..+.. .|....|+..+ .-|..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLVDLNADLAAL 239 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHHHHHHHHHHH
Confidence 7777788888888888887763 23346677777777777888888888887776542 23334444443 233355
Q ss_pred HHH
Q 045379 308 SRM 310 (352)
Q Consensus 308 ~~m 310 (352)
+.+
T Consensus 240 ~~~ 242 (694)
T PRK15179 240 RRL 242 (694)
T ss_pred HHc
Confidence 555
No 86
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=2e-05 Score=71.41 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 045379 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE 225 (352)
Q Consensus 148 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 225 (352)
.+.+.+......+++.+.+..+.|++..++...+.. ....-..|..++++.|.+.|..+++..+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556667777777777777777777777777654 222223455678888888888888888888777788888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 272 (352)
++|.||..+.+.|++..|.++..+|...+.-.+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887777666666666666666666554
No 87
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.9e-06 Score=48.66 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPP 187 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 187 (352)
+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00033 Score=58.18 Aligned_cols=157 Identities=13% Similarity=-0.033 Sum_probs=107.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
-..+...|+-+....+........ +-|....+..+....+.|++.+|...+++.... -++|..+|+.+--+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 344555666666666665544322 235556666777777888888888888777665 356777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
+.|..-|.+..+-- .-+....|+|.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++|..+..+-
T Consensus 151 ~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88888887777642 2245667777777777788888888887776653 235666677777777788888887776654
Q ss_pred H
Q 045379 286 Q 286 (352)
Q Consensus 286 ~ 286 (352)
.
T Consensus 229 ~ 229 (257)
T COG5010 229 L 229 (257)
T ss_pred c
Confidence 4
No 89
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.9e-06 Score=48.74 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=31.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP 152 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 152 (352)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999987
No 90
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.26 E-value=0.0019 Score=60.39 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHcc
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQK 132 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~ 132 (352)
....-...|.+.+.++-|+.+|... |.+...|......=-..|..+..+.++.... .|-....-+-..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 6677788888999898888877543 3456667655554434444333333333222 677777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (352)
|+...|..++....+.... +...|..-+..-....+++.|..+|.+.... .|+..+|.--++.-.-.+..++|.+++
T Consensus 598 gdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 9999999999888876543 6678888888888889999999998887664 567777776666667778888888888
Q ss_pred HHHHHc---------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 045379 213 QRMKRD---------------------------------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259 (352)
Q Consensus 213 ~~m~~~---------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 259 (352)
++-++. .++-.+..|-.|...--+.|++-+|..+++.-.-.+ +-+.
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~ 753 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA 753 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc
Confidence 766543 122233344444444445556666666666655443 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..|-..|..=.+.|+.+.|..+..+..+.
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777777888888887777766543
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00019 Score=59.59 Aligned_cols=182 Identities=12% Similarity=-0.000 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHH
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKK 137 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~ 137 (352)
...++.+....+-....-..+..-|.|... ...-..+...|+.+..-.+..... .-+..+....+.|++.+
T Consensus 40 ~~~~~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~ 118 (257)
T COG5010 40 PESSLAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGE 118 (257)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHH
Confidence 455555555554333334444444444444 333334444444433333332211 44557778888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
|...+.+...-. ++|...|+.+--+|-+.|++++|..-|.+..+-. +-+....|.+.-.|.-.|+++.|..++.....
T Consensus 119 A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 119 AVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998887643 3678899999999999999999999988888753 23456778888888888999999999888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
.+ .-|...-..+.-.....|++++|.++...-.
T Consensus 197 ~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 SP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 64 2367777888888889999999988776544
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.00016 Score=59.41 Aligned_cols=127 Identities=11% Similarity=0.128 Sum_probs=101.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCC--HHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG-LLKGGN--PQK 207 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~ 207 (352)
..++.+++...+....+... .|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 35667788888877776553 478899999999999999999999999988864 4467777777776 467777 599
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 261 (352)
|.+++++..+.. +-+..++..+...+.+.|++++|+..|+++.+.. +|+..-
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 999999998875 3377889999999999999999999999998764 444433
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=0.00026 Score=54.98 Aligned_cols=94 Identities=11% Similarity=-0.120 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK 236 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 236 (352)
+......+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3334445555555555555555554442 2344555555555555555555555555555432 2344555555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 045379 237 ASKSFMALKLFNEMRS 252 (352)
Q Consensus 237 ~g~~~~a~~l~~~m~~ 252 (352)
.|++++|+..|+....
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 94
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00014 Score=65.29 Aligned_cols=225 Identities=16% Similarity=0.077 Sum_probs=153.7
Q ss_pred HHHhcCCHHHHHHHhcCCC---C-chhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHH
Q 045379 72 FVQREVDSNTIWDAFDSLP---P-THATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAE 139 (352)
Q Consensus 72 ~~~~~g~~~~A~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~ 139 (352)
++.-+|+.-.|..-|+..- | +...|--+...|....+....-..+.... +|.--...+.-.+++++|.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 3344677777766666432 2 22225555555555544433333332222 7777777788888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 140 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
.=|++...-... +...|.-+--+.-++++++++...|++.+++ ++.-+.+|+.....+..++++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988874421 4557777777777899999999999998876 66677899999999999999999999999876631
Q ss_pred -----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 220 -----C--QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 220 -----~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
+ .+.+.+.-.++..- -.+++..|++++++..+.. +-....|..|...-.+.|++++|.++|++-...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l---- 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL---- 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 1 11122222333222 3388999999999888753 223457889999999999999999999987532
Q ss_pred CHHHHHHHHHHHH
Q 045379 293 DVYAYNALMEAYR 305 (352)
Q Consensus 293 ~~~~~~~li~a~~ 305 (352)
..|-.-++.+|.
T Consensus 567 -Art~~E~~~a~s 578 (606)
T KOG0547|consen 567 -ARTESEMVHAYS 578 (606)
T ss_pred -HHhHHHHHHHHH
Confidence 234455555655
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00036 Score=65.68 Aligned_cols=262 Identities=13% Similarity=0.047 Sum_probs=145.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH-------HHHHHHHHHHccCCHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC-------VSILLIEAYGQKSLHKK 137 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~ 137 (352)
....+...+.+.|...+|..+|+++ ..|.-.+-+|...|+.++++.+..... .|..+.+.....-.+++
T Consensus 400 ~q~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 4467777888888888888888865 334444444444444333333332211 33333333333333444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
|.++.+....+ .-..+-....++++++++.+.|+.-.+.. +.-..+|-.+-.++.+.++++.|.+.|..-..
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 44443333221 00000000111344444444444433321 12345566666667777888888888887665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYA 296 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~ 296 (352)
-. +-+...||++-.+|.+.++-.+|...+.+..+.+ .-+...|.+.+....+.|.+++|.+.+.++.+. ....|...
T Consensus 548 L~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 548 LE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred cC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 41 3356788999999999999999999888888766 444556777788888889999999888888653 11225455
Q ss_pred HHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 297 YNALMEAYRLISRM-----HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 297 ~~~li~a~~~~~~m-----~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
...++... .+.+ +....|....-..+.....+.++-.+..+++.
T Consensus 626 l~~iv~~~--~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a 674 (777)
T KOG1128|consen 626 LLIIVRTV--LEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYA 674 (777)
T ss_pred hHHHHHHH--HhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHh
Confidence 44444333 2333 11111111222445555666666556555543
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=0.00025 Score=55.12 Aligned_cols=100 Identities=10% Similarity=-0.074 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
.+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35566778899999999999999998874 4578899999999999999999999999999764 557788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 271 REGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 271 ~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
..|+.++|...|....+. .|+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCC
Confidence 999999999999999865 4543
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.0016 Score=64.50 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=154.6
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC---Cchh-hHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHH
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP---PTHA-TWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYG 130 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (352)
.+...|.-......|+..|...+++++|.++.+... |+.. -|-.+...+.+.++...+. .. .+++...
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~-------lv-~~l~~~~ 94 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSN-------LL-NLIDSFS 94 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhh-------hh-hhhhhcc
Confidence 455566666688999999999999999998886432 4433 3333333444444422221 11 6777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
...++.-+.-+...|.+.+ -+...+-.+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|+.. ++++|.+
T Consensus 95 ~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 7888866666667776643 345588889999999999999999999999887 67888999999999999 9999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHh
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH-------------------KCKPNICTYTALVNAFAR 271 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------------------g~~p~~~t~~~li~~~~~ 271 (352)
++.+..+. |...+++..+.+++.++... |..--..++-.+-..|-.
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 99887764 33333444444444444332 223334456666678888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
.++|+++.++++.+.+..- -|.....-++..|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 8899999999999987642 24555666666665
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.14 E-value=0.0043 Score=58.01 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCC---chhhHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPP---THATWDDLINVSV 104 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~l~~~~~ 104 (352)
...+|++.|.+.|.+++|..+|++--. ++.-|+.+.++|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence 569999999999999999999986542 3333444445444
No 99
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00037 Score=62.95 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
....++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44566777777889999999999998875 44 44457888888888889999998887652 346667777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 236 KASKSFMALKLFNEMRSHKCKPNI-CTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+.++++.|+++.++.... .|+. .+|..|..+|.+.|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999998875 4555 489999999999999999999888774
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=0.00029 Score=53.98 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
...+...+...|++++|...|+...+.+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2344555555555555555555555555554432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQLQG 287 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~ 287 (352)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00038 Score=57.96 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=73.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cCC
Q 045379 128 AYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL----KGG 203 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g 203 (352)
.|...|++++|++..... -+......=.....+..++|.|.+.+++|.+.. +..|.+-|..++. ..+
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 355566666666555541 122222222333445556666666666665532 3344443333333 234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC-EEAEEIF 282 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~l~ 282 (352)
.+.+|.-+|++|.++ .+|+..+.|....++...|++++|+.++++......+ +..|...+|-.-...|.- +-..+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 466666666666553 2556666666666666666666666666666554322 334444444333333332 3334444
Q ss_pred HHHH
Q 045379 283 EQLQ 286 (352)
Q Consensus 283 ~~m~ 286 (352)
.+++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4444
No 102
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=7.1e-05 Score=53.88 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHKC-KPNICTYTALVNAFAREG--------LCEEAEEIFEQLQGAGIEPDVYAYNA 299 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~l~~~m~~~~~~p~~~~~~~ 299 (352)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555555777777777777777777 677777777777766532 23345666666666666666666666
Q ss_pred HHHHH
Q 045379 300 LMEAY 304 (352)
Q Consensus 300 li~a~ 304 (352)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 66543
No 103
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=8.4e-05 Score=53.50 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=63.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHCCCCCCHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRC-IPTEDTYALLLKAYCMSGL--------LEKAEAVFREMRKYGLPPSAVV 191 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~~~ 191 (352)
+-...|..+...+++.....+|..++..|+ .|+..+|+.++.+.++..- .-..+.+|++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999998 8999999999998887542 3456677788887788888888
Q ss_pred HHHHHHHHHc
Q 045379 192 YNSYIDGLLK 201 (352)
Q Consensus 192 ~~~li~~~~~ 201 (352)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0015 Score=54.45 Aligned_cols=140 Identities=19% Similarity=0.114 Sum_probs=107.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 140 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
++.+.+.......+......-...|+..|++++|++..+.. -+......=+..+.+..+.+.|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 34445555544445455555567788999999999998772 13345555555677888999999999999975
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 220 CQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 220 ~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
.+..|.+.|.++|.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++...+..
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 256677777777664 46689999999999864 57999999999999999999999999999998764
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.00039 Score=53.23 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
......+...+...|++++|...++...+.+ +.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3456666677777888888888888877654 4466777777888888888888888888776653 4456677777778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPNICT 261 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t 261 (352)
|...|++++|...|+...+. .|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 88888888888888877764 344433
No 106
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=6.3e-06 Score=45.35 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRC 150 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 150 (352)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776653
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00026 Score=63.99 Aligned_cols=124 Identities=20% Similarity=0.132 Sum_probs=104.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.-.+|+..+...++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++++..+. .+-+..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 44566777888899999999999999865 55 4455788888889999999999998865 3456777888888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
+.++++.|..+.++..+. .|+ -.+|..|..+|...|++++|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999986 454 5699999999999999999999998875
No 108
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=0.0001 Score=66.89 Aligned_cols=123 Identities=9% Similarity=0.129 Sum_probs=106.3
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 045379 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD--CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260 (352)
Q Consensus 183 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 260 (352)
.+.+.+......+++.+....+++.+..++.+++.. ....-..|..++|..|.+.|..++++.++..=...|+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 355667788888999999999999999999998875 222234566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
++|.||..+.+.|++..|.++...|...+.-.+..|+...+.+|.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 999999999999999999999999988877777788877776665
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00059 Score=53.07 Aligned_cols=125 Identities=17% Similarity=0.086 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP--TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA--VVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li 196 (352)
.|..++..+ ..++...+.+.++.+.+....- .....-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 2555555555555555433211 0122223334555555666666655555554422211 1222344
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFN 248 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 248 (352)
..+...|++++|...++..... ......+...-..|.+.|++++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4555555555555555443222 1223344445555555555555555554
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.02 E-value=0.00084 Score=65.43 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=117.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
.+-.|.....+.|++++|..+++...+.. |+ ......+..++.+.+++++|....++..... +-+......+..++
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l 164 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 77888899999999999999999998843 65 4478889999999999999999999998874 45667788888899
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 266 (352)
.+.|++++|..+|++.... .+-+..++..+-.++-..|+.++|...|+...+.- .|...-|+..+
T Consensus 165 ~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 9999999999999999984 34458899999999999999999999999987642 34445555443
No 111
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00066 Score=58.83 Aligned_cols=244 Identities=13% Similarity=0.100 Sum_probs=154.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCc-hhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPT-HATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
..-.|+-.|-+++++++|..+...+.|. +.-| ++.+. ++.++..-.+.....+-|.+.|.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Ey--ilKgv-----------------v~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEY--ILKGV-----------------VFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChHHH--HHHHH-----------------HHHHhhhhcCcHHHHHHHHHHHH
Confidence 3456777888999999999999988753 3333 34432 22222233333444556667676
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 144 ELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 144 ~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
..-+++..-|.. --.++.+++.-..++|+++-.++..+..=...|..-+ .+..+++..|.+.+|+++|-+.....++-
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn 426 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKN 426 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhh
Confidence 555555443332 3344555566667788888888777765433343433 46778888999999999998876655443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY-TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALM 301 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 301 (352)
+..-...|..+|.++++++.|++++-.+.. +.+..+. ..+.+-|-+.+++--|.+.|+.+... .|+++.|.-=-
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKR 501 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKR 501 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCcc
Confidence 333345567888999999999887766643 2233333 34456788888888888888888754 67777777666
Q ss_pred HHHH-HHHHH--hcCCCCCHHHHHHHHHHHHHcCC
Q 045379 302 EAYR-LISRM--HMGCEPDRASYNIMVDAYGRAGL 333 (352)
Q Consensus 302 ~a~~-~~~~m--~~~~~p~~~~~~~li~a~~~~g~ 333 (352)
-||+ +|..+ ...-+.......-++..+...++
T Consensus 502 GACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 502 GACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred chHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 6666 67766 22222234445555555555444
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00087 Score=52.13 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS---AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST--ETYTLM 230 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l 230 (352)
.|..++..+ ..++.+.+...++.+.+.. +.+ ....-.+...+...|++++|...|+...+....|+. ...-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 445555555 4899999999999998863 223 223334557888999999999999999987633332 244557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
...+...|++++|+..++..... ......+...-..|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88899999999999999775443 234456777888999999999999999864
No 113
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1.1e-05 Score=44.35 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
||.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.96 E-value=0.00047 Score=65.06 Aligned_cols=113 Identities=23% Similarity=0.303 Sum_probs=74.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045379 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 239 (352)
.+.+.....+|..|+.+++.++.+.. -..-|..+...|+..|+++.|+++|-+-- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 45666777788888888887776643 22456677777888888888888775432 35566777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 240 SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 240 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
|+.|.++-++... -+.....|-+-..-.-++|++.+|.++|-.+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 8888877766542 2334445555555556667777766666433
No 115
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=0.0074 Score=53.42 Aligned_cols=212 Identities=8% Similarity=-0.030 Sum_probs=133.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccC-CHHHHHHHHH
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKS-LHKKAEFTYL 143 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~ 143 (352)
+.-+-..+...+..++|+.+.+++- .++..++ +|+.--..+...| ++++++..++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yt-----------------------aW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYT-----------------------VWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH-----------------------HHHHHHHHHHHcchhHHHHHHHHH
Confidence 3455556666777788877776543 1222221 3333333444455 5788999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 045379 144 ELLDSRCIPTEDTYALLLKAYCMSGLL--EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 221 (352)
++.+...+ +..+|+..-..+.+.|+. +.+..+++.+.+.. +-|..+|+.....+...|+++++++.++++++.+..
T Consensus 97 ~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 97 DVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 88876543 455676655555566653 67788888887764 456788888888888889999999999999887643
Q ss_pred CCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCC
Q 045379 222 PSTETYTLMINLYGKA---SKS----FMALKLFNEMRSHKCKPNICTYTALVNAFARE----GLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~---g~~----~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~l~~~m~~~~~ 290 (352)
+..+|+.....+.+. |.. +++++...+..... +-|...|+.+...+... ++..+|...+.+..+.+
T Consensus 175 -N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~- 251 (320)
T PLN02789 175 -NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD- 251 (320)
T ss_pred -chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-
Confidence 667777766555544 222 35566665555442 34566777777777663 34456777777765532
Q ss_pred CCCHHHHHHHHHHHH
Q 045379 291 EPDVYAYNALMEAYR 305 (352)
Q Consensus 291 ~p~~~~~~~li~a~~ 305 (352)
..+......|++.|+
T Consensus 252 ~~s~~al~~l~d~~~ 266 (320)
T PLN02789 252 SNHVFALSDLLDLLC 266 (320)
T ss_pred CCcHHHHHHHHHHHH
Confidence 234444555555554
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0033 Score=62.33 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHH------------------HHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAV------------------FREMR 181 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~------------------~~~m~ 181 (352)
.|..|+..+...+++++|.++.+.-.+.. |+.. .|-.+...+.+.++.+++..+ ...|.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHH
Confidence 77889999999999999999998766643 4433 333333356666665555444 11111
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045379 182 KYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261 (352)
Q Consensus 182 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 261 (352)
+. .-+...+-.+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 111 ~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 111 LY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred hh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 11 1122344455556666666666666666666654 33556666666666666 666666665555432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHcCCcchhHH
Q 045379 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM--HMGCEPDRASYNIMVDAYGRAGLHEGKCS 339 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m--~~~~~p~~~~~~~li~a~~~~g~~~~A~~ 339 (352)
|...+++..+.+++.++... .|+...+ ++. +.+.+ ..++.--..++.-+-..|...++|+++..
T Consensus 179 -------~i~~kq~~~~~e~W~k~~~~--~~~d~d~--f~~---i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 -------FIKKKQYVGIEEIWSKLVHY--NSDDFDF--FLR---IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred -------HHhhhcchHHHHHHHHHHhc--CcccchH--HHH---HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 44445555555655555543 1221111 110 22333 22445566677777778888888888888
Q ss_pred HHH
Q 045379 340 YSL 342 (352)
Q Consensus 340 ~~~ 342 (352)
+|.
T Consensus 245 iLK 247 (906)
T PRK14720 245 ILK 247 (906)
T ss_pred HHH
Confidence 875
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0037 Score=60.03 Aligned_cols=204 Identities=12% Similarity=0.050 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC------------Cch-hhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHH
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP------------PTH-ATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYG 130 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (352)
.+...++.+|.+..+++-|.-.+..|. .|. .+-.-..-...+.|..+++..++..+.-|..|=..|-
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQ 837 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQ 837 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555542 111 1111112223345566666666666666666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------CC---------CCCCHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK----------YG---------LPPSAVV 191 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~g---------~~~~~~~ 191 (352)
..|.|++|.++-+.=-.-. -..||..-..-+-..++.+.|++.|+.... .. -..+...
T Consensus 838 s~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred hcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 6777777776654322211 122444444444445666666665554211 00 0122334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
|...-...-..|..+.|+.+|...++ |-.++...|-+|+.++|-++-++- -|....-.|.+.|..
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhh
Confidence 44444444456666666666655442 223333334444444444433321 244445555666666
Q ss_pred cCCHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQL 285 (352)
Q Consensus 272 ~g~~~~a~~l~~~m 285 (352)
.|++.+|...|.+.
T Consensus 980 ~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666666554
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.90 E-value=0.0048 Score=63.17 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCcchhHHHHH
Q 045379 319 ASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 319 ~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+...+..++.+.|+.++|.+.+.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566677888888888888764
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0016 Score=59.90 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=108.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 208 (352)
+.+.|++.+|.-.|+...+..+. +...|.-|-.+-+..++-..|+..+.+..+.. +-|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34455666666666555554321 34455555555555555555555555555432 22334444444444444444444
Q ss_pred HHHHHHHH------------------------------------------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045379 209 VEIFQRMK------------------------------------------RDCCQPSTETYTLMINLYGKASKSFMALKL 246 (352)
Q Consensus 209 ~~~~~~m~------------------------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 246 (352)
.+.++.-+ +.+..+|......|--.|--.|++++|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 44443332 233335556666666666677777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 045379 247 FNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMV 325 (352)
Q Consensus 247 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li 325 (352)
|+..... +| |...||.|-.+++...+.++|...|.+..+. .|+ =..+...|.
T Consensus 453 f~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~-----------------------yVR~RyNlg 505 (579)
T KOG1125|consen 453 FEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG-----------------------YVRVRYNLG 505 (579)
T ss_pred HHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC-----------------------eeeeehhhh
Confidence 7766653 33 4456777777777777777777777777653 222 244556777
Q ss_pred HHHHHcCCcchhHHHHH
Q 045379 326 DAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 326 ~a~~~~g~~~~A~~~~~ 342 (352)
-+|...|.++||.+.|.
T Consensus 506 IS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLL 522 (579)
T ss_pred hhhhhhhhHHHHHHHHH
Confidence 78888888888888885
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=0.0035 Score=56.68 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS-AVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 207 (352)
+...|++++|+..++.+.... +-|+.-+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334555555666555555432 123334444445555566666666666555553 222 3444455555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
|..+++...... +-|...|..|-.+|...|+..++..-..+ .|...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 666655554432 33555566666666665555555443332 23345566666666655554
Q ss_pred C
Q 045379 288 A 288 (352)
Q Consensus 288 ~ 288 (352)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.01 Score=51.73 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHhH---------------------
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------------------- 120 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 120 (352)
.-=+...|.+.|++++|...+.-+. ++...|-.+.-+..-.|...++..+...+.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 3445566668889999888776442 344444444333333333333333222111
Q ss_pred -------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHC
Q 045379 121 -------------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLK-AYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 121 -------------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~ 183 (352)
---+|.+...-.-.+++|+++|......+ |.-...|.-+. +|.+..-++-+.++++...+.
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 12233344334456888999998888644 55556665444 455666677777777665543
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0069 Score=50.30 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045379 167 SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKL 246 (352)
Q Consensus 167 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 246 (352)
.|++++|.++++.+.+.+ +.|.+++---+...-.+|+--+|++-+....+. +..|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444443 233333433333333344444444444444333 233455555555555555555555555
Q ss_pred HHHHHh
Q 045379 247 FNEMRS 252 (352)
Q Consensus 247 ~~~m~~ 252 (352)
++++.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 555543
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.011 Score=54.79 Aligned_cols=113 Identities=10% Similarity=-0.023 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH---HHHHH----HHHHHccCCHH
Q 045379 68 QILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC---VSILL----IEAYGQKSLHK 136 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~l----i~~~~~~g~~~ 136 (352)
+=++.+.+.|++++|.+.-.++ |.+...+..=+-+..+.++.+.+..+.+... +++.. .-+..+.+..+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 3356667888888887666554 3333333333333334444433333222211 23333 23345678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG 184 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 184 (352)
+|+..++-... .|..+...-...|.+.|++++|.++|..+.+.+
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888872222 234466667778888999999999998886554
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.84 E-value=0.014 Score=59.87 Aligned_cols=224 Identities=8% Similarity=-0.142 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHH---HhhccCcchhhHHhH---------HHHHHHHHHHc
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQ---LRLNKKWDPIVLMSC---------VSILLIEAYGQ 131 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~---------~~~~li~~~~~ 131 (352)
..+......+...|++.+|.......+........+...... .++.......+.... ........+..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 355666777888899888887777665332222222221111 111111111111110 11233344556
Q ss_pred cCCHHHHHHHHHHHHhCCC------CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRC------IPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS----AVVYNSYIDGL 199 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~------~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~ 199 (352)
.|+++++..++....+.-- .|... ....+-..+...|++++|...+++..+.--..+ ....+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 7889999888887654210 11111 222233455678899999998888765311111 13345566667
Q ss_pred HcCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRD----CC-QPSTETYTLMINLYGKASKSFMALKLFNEMRS----HKCK--P-NICTYTALVN 267 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~--p-~~~t~~~li~ 267 (352)
...|++++|...+++.... |- .+...+...+...+...|++++|...+++... .+.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7889999999888877642 11 11123455667778888999999888877644 2211 1 2233445556
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 045379 268 AFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 268 ~~~~~g~~~~a~~l~~~m~~ 287 (352)
.+...|++++|...+.+...
T Consensus 582 ~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHH
Confidence 66778999999988887754
No 125
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00047 Score=55.97 Aligned_cols=88 Identities=22% Similarity=0.462 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----------------CCHHHHHH
Q 045379 152 PTEDTYALLLKAYCM-----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG----------------GNPQKAVE 210 (352)
Q Consensus 152 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~a~~ 210 (352)
.|..+|..+++.+.+ .|..+-....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455666666666653 356666666777777777777777777777765542 12345666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 239 (352)
++++|...|+.||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666666555
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.0013 Score=48.82 Aligned_cols=97 Identities=15% Similarity=0.021 Sum_probs=53.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCI--PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG--LPPSAVVYNSYID 197 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~ 197 (352)
+..+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|++++|...++.+.... .+.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455566666666666666666543211 113345556666666666666666666665431 1112344555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 045379 198 GLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~ 218 (352)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666554
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.78 E-value=0.024 Score=53.19 Aligned_cols=275 Identities=11% Similarity=0.089 Sum_probs=158.4
Q ss_pred cccccccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhh----------HHh
Q 045379 50 YGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIV----------LMS 119 (352)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~ 119 (352)
.+..-+.+. +.+.|++.++=+. ++++...+.+|| ..|-..+......++..+....+ ...
T Consensus 69 ~R~~~vk~~-~~T~~~~~~vn~c------~er~lv~mHkmp---RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~ 138 (835)
T KOG2047|consen 69 ARRAQVKHL-CPTDPAYESVNNC------FERCLVFMHKMP---RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD 138 (835)
T ss_pred HHHHHhhcc-CCCChHHHHHHHH------HHHHHHHHhcCC---HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc
Confidence 343333333 3456666554333 466666777775 33444444443333332222222 222
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHH
Q 045379 120 CVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY------GLPPSAVVYN 193 (352)
Q Consensus 120 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~ 193 (352)
.+|...+......|-++-+.++|++.++ .++..-..-|..++..+++++|-+.+...... ..+.+-..|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 2888888888888888999999998887 45666788888889999999998888776532 2344556666
Q ss_pred HHHHHHHcCCCHHH---HHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045379 194 SYIDGLLKGGNPQK---AVEIFQRMKRDCCQPST--ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268 (352)
Q Consensus 194 ~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 268 (352)
.+.+..++..+.-. ...+++.+... -+|. ..|+.|..-|.+.|.+++|..++++-... ..+..-|..+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence 66666665544322 33444444433 3333 46788888888888888888888876654 2344445555555
Q ss_pred HHhcCC----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHH--------HH
Q 045379 269 FAREGL----------------------CEEAEEIFEQLQGAG-----------IEPDVYAYNALMEAYR--------LI 307 (352)
Q Consensus 269 ~~~~g~----------------------~~~a~~l~~~m~~~~-----------~~p~~~~~~~li~a~~--------~~ 307 (352)
|+.-.. ++-.+.-|+.+.+.+ -.-++.+|..-+..+. .+
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 543211 222333333333221 0112233333222211 33
Q ss_pred HHHhcCCCC------CHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 308 SRMHMGCEP------DRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 308 ~~m~~~~~p------~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+.-..+.| -...|..+.+-|-.+|+++.|..+|.
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333222222 23458888999999999999999986
No 128
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.00071 Score=54.95 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045379 187 PSAVVYNSYIDGLLKG-----GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK 236 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 236 (352)
.|..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|+..+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4556666666666543 4455555566666666666666666666665543
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00079 Score=46.98 Aligned_cols=91 Identities=22% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555566666666666555432 2223445555555666666666666666555432 223345555556666666
Q ss_pred CHHHHHHHHHHHH
Q 045379 274 LCEEAEEIFEQLQ 286 (352)
Q Consensus 274 ~~~~a~~l~~~m~ 286 (352)
++++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666665554
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.75 E-value=0.042 Score=52.65 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV-YAYNALMEAY 304 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~a~ 304 (352)
.|......+.+.+..++|...+.+.... .......|...-..+...|++++|.+.|...... .|+. ...+++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 3567788888999999999888887654 2445566777778888999999999999988754 3332 3344444444
Q ss_pred H------------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 305 R------------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 305 ~------------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
. ++..+-+--+.+...|..+...+-+.|+.++|.+.|.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 3 4444433336689999999999999999999999996
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00087 Score=61.57 Aligned_cols=211 Identities=15% Similarity=0.091 Sum_probs=154.8
Q ss_pred HHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHH
Q 045379 71 RFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a 138 (352)
.-+-+.|++.+|.-.|+.- |.+...|--|.-.-....+...+..++..|. +.-+|.-.|...|.-.+|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3345788999998888753 3577889888888777776666666666555 777888889999999999
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 139 EFTYLELLDSRCI--------PTEDTYALLLKAYCMSGLLEKAEAVFREM-RKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 139 ~~l~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
++.++.-....++ ++...-.. ........+....++|-++ .+.+..+|..+...|--.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999877653321 00000000 1111222334455555554 44555678888888888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+.|+..+... +-|...||-|-.+++...+.++|+..+.+..+. +|+ ++....|.-+|...|.+++|...|-...
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999988763 447789999999999999999999999999876 565 3466677778999999999999887764
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0059 Score=57.86 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 280 (352)
.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|...... .|| ...||++-.+|.+.|+..+|..
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 344555555554433322 223445555555555555566555555555432 233 3346666666666666666655
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 281 IFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 281 l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+++..+-+ .-+...|.+-+....+-|.+++|.+.+.
T Consensus 575 ~l~EAlKcn-------------------------~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 575 KLKEALKCN-------------------------YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHhhcC-------------------------CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 555554332 3356667777788888899999888876
No 133
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0062 Score=51.79 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS-YIDGLL 200 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 200 (352)
+.+.+..+.+-.++.+|++++..-.++.. .+....+.+-.+|-...++..|-..++++... -|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 34455556666777777777766665542 25566666777777777777777777776553 233333321 122333
Q ss_pred cCCCHHHHHHHHHHHHHc------------------C-C------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRD------------------C-C------------QPSTETYTLMINLYGKASKSFMALKLFNE 249 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~------------------~-~------------~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 249 (352)
+.+.+.+|.++...|.+. + + .-+..+.+..-....+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 445555555555444321 0 0 11333444444455678999999999998
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045379 250 MRSH-KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIE 291 (352)
Q Consensus 250 m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 291 (352)
..+- |.. ....||..+..| +.|+++.|++...++.++|++
T Consensus 170 AlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 170 ALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 8764 444 445677766655 568999999999999888764
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0012 Score=63.17 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH-----------------HHHHHHHHHHccCC
Q 045379 72 FVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC-----------------VSILLIEAYGQKSL 134 (352)
Q Consensus 72 ~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~li~~~~~~g~ 134 (352)
+|..-|+.+.|.+-.+.+ ++-..|..|.+.|.+.++.+-+.-.+..+. .=..+.-.-...|.
T Consensus 737 fyvtiG~MD~AfksI~~I-kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI-KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEEeccHHHHHHHHHHH-hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 345567777766655544 344567777776666554432222211111 11111112234455
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
.++|+.+|.+... |..+=..|...|.|++|.++-+.--...++ .||-.-...+-..++.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHh
Confidence 5666666655544 223334455566666666654432222222 3344444444445556666555543
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.0025 Score=47.29 Aligned_cols=94 Identities=17% Similarity=0.071 Sum_probs=38.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCC--QPSTETYTLMINLYGKASKSFMALKLFNEMRSHK--CKPNICTYTALVNAFA 270 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~li~~~~ 270 (352)
+...+.+.|++++|...|+++.+..- +.....+..+..++.+.|++++|.+.|+.+.... .......+..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344444444444444444443210 0012233334444444445555555444444321 0111233444444444
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 045379 271 REGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 271 ~~g~~~~a~~l~~~m~~~ 288 (352)
+.|+.++|...++++.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HhCChHHHHHHHHHHHHH
Confidence 455555555555544443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.0023 Score=57.83 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 045379 166 MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 244 (352)
..|+++.|+..++.+.+. .+-|..-.......+.+.++..+|.+.++.+... .|+ ....-.+-.++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 456667777777776554 3445555556666777777777777777777765 344 445556667777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 245 KLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 245 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.+++..... .+-|+..|..|..+|...|+..++..-..+...
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 777776644 255666777777777777777777777666543
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.0011 Score=46.19 Aligned_cols=93 Identities=22% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
|..+...+...|++++|...+.+..+... .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 34444555555555555555555544321 122344444455555555555555555544432 1222344444444444
Q ss_pred CCCHHHHHHHHHHHH
Q 045379 202 GGNPQKAVEIFQRMK 216 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~ 216 (352)
.|+++.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 455555554444443
No 138
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.038 Score=49.32 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=137.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCchhh--HHHHHHHHHHHhhccCcchhhHHhH------HHHHHHHHHHccCCHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHAT--WDDLINVSVQLRLNKKWDPIVLMSC------VSILLIEAYGQKSLHK 136 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~ 136 (352)
.-...+..|.-.|+-++|..++.+.|+...+ -|.|+.-+-+.|-.. .++++..+. .--..|.+..+.+ +.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~-~~~vl~ykevvrecp~aL~~i~~ll~l~-v~ 176 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRH-KEAVLAYKEVIRECPMALQVIEALLELG-VN 176 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccc-cHHHHhhhHHHHhcchHHHHHHHHHHHh-hc
Confidence 3456788888889999999999999865433 233333333333222 243333222 0011111111110 00
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCM--SGLLEKAEAVFREMRK-YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
.+..-=..|-...+.|...+...-+.+++. .++...+...+-.+.. .-++.|+.....+.+.+...|+.++|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 011111122222233433344444444433 3444444444433332 2356677778888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG--IE 291 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~ 291 (352)
+....+ +.++.....-.-.+.+.|+++....+...+.... +-+...|-.-.......++++.|+.+-.+..+.. ..
T Consensus 257 ~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 257 STLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 877542 1122222222333456677777777776665431 1233334433444445667777777776665431 11
Q ss_pred CCHHH-HHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHH
Q 045379 292 PDVYA-YNALME------AYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 292 p~~~~-~~~li~------a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
|-... -+.|+. |-.-|+....--+.+..+|.-|+..|...|+++||.-+-
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 11111 111111 111333332223457788888888888888888887553
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.024 Score=47.17 Aligned_cols=162 Identities=20% Similarity=0.123 Sum_probs=119.8
Q ss_pred ccCCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 131 QKSLHKKAEFTYLELLD---SR-CIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~---~~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
...+.++..+++.++.. .| ..|+.. .|-.++-+....|+.+.|..+++++..+- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 45677888888888873 34 556666 56677778888999999999999988763 33333322222234457899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
++|+++++.+.+.. +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998876 556667766666777778888888888887765 4568899999999999999999999999998
Q ss_pred HHCCCCCCHHHH
Q 045379 286 QGAGIEPDVYAY 297 (352)
Q Consensus 286 ~~~~~~p~~~~~ 297 (352)
.-. .|....|
T Consensus 181 ll~--~P~n~l~ 190 (289)
T KOG3060|consen 181 LLI--QPFNPLY 190 (289)
T ss_pred HHc--CCCcHHH
Confidence 754 4544333
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0017 Score=56.55 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKA-YCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
+|..++...-+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|.++|+...+. ++.+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 577788888888888899999988885432 233444444333 22356677789999888775 556777888888888
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPS---TETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999888765 2222 247888888888888888888888887664
No 141
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.033 Score=49.27 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
+.+..|.-+...|+...|.++-.+.+ .|+..-|..-+.+++..++|++-.++... +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555556666666666655554 45666666667777777777666554321 123355666666676
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHH
Q 045379 271 REGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSY 340 (352)
Q Consensus 271 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~ 340 (352)
+.|+..+|..+..++. +..-+..|.++|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------------------------------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------------------------------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCC----------------------------------hHHHHHHHHHCCCHHHHHHH
Confidence 7777666666665521 14556677777777777665
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00017 Score=50.25 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543321 1233333345555555555555555554 11111 1112222334455555555555555
Q ss_pred HH
Q 045379 212 FQ 213 (352)
Q Consensus 212 ~~ 213 (352)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 143
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.066 Score=48.69 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA-VVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~ 199 (352)
.|-.....=..++++..|..+|+..++... .+...|.--+.+=.++..+..|..+++..... -|-+ ..|--.+.+=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 444444444455666677777776665442 35556666666666666666666666666543 1211 2222233333
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
-..|++..|.++|++-.+- .|+..+|++.|+.-.+.+.++.|..+++...-. .|+..+|-....-=.+.|++..|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 3456666666666665554 566666666666666666666666666665532 366666655555555556665555
Q ss_pred HHHHHHHH
Q 045379 280 EIFEQLQG 287 (352)
Q Consensus 280 ~l~~~m~~ 287 (352)
.+|....+
T Consensus 228 ~VyerAie 235 (677)
T KOG1915|consen 228 SVYERAIE 235 (677)
T ss_pred HHHHHHHH
Confidence 55555543
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0071 Score=48.49 Aligned_cols=88 Identities=16% Similarity=0.033 Sum_probs=61.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT--EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 566677778888888888888888876543332 3577778888888888888888888877652 2345566666667
Q ss_pred HHcCCCHHHHH
Q 045379 199 LLKGGNPQKAV 209 (352)
Q Consensus 199 ~~~~g~~~~a~ 209 (352)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 77766654443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00036 Score=48.63 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~ 279 (352)
+|+++.|..+++++.+..-. ++...+-.+..+|.+.|++++|+.+++. .+. .|+ ....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666554211 1233344456666666666666666655 211 121 223333355566666666666
Q ss_pred HHHHH
Q 045379 280 EIFEQ 284 (352)
Q Consensus 280 ~l~~~ 284 (352)
+++.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.48 E-value=0.0017 Score=61.50 Aligned_cols=160 Identities=12% Similarity=0.053 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHhcCCC-Cc--hhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 045379 75 REVDSNTIWDAFDSLP-PT--HATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCI 151 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 151 (352)
....|.+|+.+++.++ ++ ..-|.-+...|+..|+.+.+++++.....++-.|.+|.+.|+|..|.++-.+.. |..
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~--~~e 821 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH--GPE 821 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc--Cch
Confidence 3445556666666554 22 223555555666666666666666666667777777777777777777655443 333
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
.+...|..-..-.-..|++.+|+++|-.... |+ ..|.+|-+.|..++..++.++-.... -..|.-.+.
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~ 889 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFA 889 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHH
Confidence 4444555555555566666666665533211 21 23445555565555555554432211 112333444
Q ss_pred HHHHhcCCHHHHHHHHH
Q 045379 232 NLYGKASKSFMALKLFN 248 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~ 248 (352)
.-|-..|++..|+.-|-
T Consensus 890 ~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHhccChhHHHHHHH
Confidence 45555555555555443
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0035 Score=50.05 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP--SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
...|..+...+...|++++|...|++.......+ ...++..+...|...|++++|...+++..+.. +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3345555556666666666666666665442111 22456666666666666666666666665431 22234444555
Q ss_pred HHHH
Q 045379 232 NLYG 235 (352)
Q Consensus 232 ~~~~ 235 (352)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4554
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0085 Score=52.16 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG-LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
.+|..+|...-+.+..+.|..+|.+.++.+. .+..+|-..... |...++.+.|.++|+...+. ++.+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788899999999999999999999986532 233444444444 44467788899999998875 56678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPNI----CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
+...|+.+.|..+|+..... .|.. ..|...+..=.+.|+++.+..+.+++.+. .|+......+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhh
Confidence 99999999999999999865 3333 48999999999999999999999998864 555555555554443
No 149
>PLN02789 farnesyltranstransferase
Probab=97.45 E-value=0.073 Score=47.19 Aligned_cols=206 Identities=8% Similarity=-0.025 Sum_probs=137.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG-LLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
++..+-..+...++.++|+.++.++.+.... +..+|+.--.++...| ++++++..++++.+.. +.+..+|+..-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4555556677889999999999999985422 3446666666666777 6799999999998764 34445677655555
Q ss_pred HcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 045379 200 LKGGN--PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE---GL 274 (352)
Q Consensus 200 ~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~ 274 (352)
.+.|+ .+++..+++++.+.. +-+..+|+...-++...|+++++++.++++.+.+. -|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 66665 367888998888765 34788999999999999999999999999988764 3556677666555544 22
Q ss_pred H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------HHHHHhcCCCCCHHHHHHHHHHHHHc
Q 045379 275 C----EEAEEIFEQLQGAGIEPDVYAYNALMEAYR--------------LISRMHMGCEPDRASYNIMVDAYGRA 331 (352)
Q Consensus 275 ~----~~a~~l~~~m~~~~~~p~~~~~~~li~a~~--------------~~~~m~~~~~p~~~~~~~li~a~~~~ 331 (352)
. ++......++.... .-|...|+.+-..+. .+......-+.+......|++.|+..
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 2 45666665655431 122333333322222 22222112234666778888888864
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.04 Score=46.82 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=108.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK-- 201 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 201 (352)
...+.+.|++++|.+.|+.+...-..+... ..-.+..++.+.+++++|...+++..+..-.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 444667899999999999998755433222 2345678889999999999999999876322222344444444331
Q ss_pred C---------------CC---HHHHHHHHHHHHHcCCCCCHHHH------------------HHHHHHHHhcCCHHHHHH
Q 045379 202 G---------------GN---PQKAVEIFQRMKRDCCQPSTETY------------------TLMINLYGKASKSFMALK 245 (352)
Q Consensus 202 ~---------------g~---~~~a~~~~~~m~~~~~~~~~~~~------------------~~li~~~~~~g~~~~a~~ 245 (352)
. .+ ..+|...|+++.+. -|+..-. -.+..-|.+.|.+..|..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 1 11 34577778887765 3332110 123455788899999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 246 LFNEMRSH--KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 246 l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
-|+.+.+. +.+........++.+|.+.|..++|..+...+..
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99988764 3344556778888999999999999888776643
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.033 Score=54.18 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=91.3
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAY--CMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
...+++..|+.....+.+.. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34578888888888877643 332 344444443 5788888888888777666544 77888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
|..+|++..+. .|+......+..+|++.+.+.+-.+.--+|.+. .+-+...+-++++.+.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 88888888776 567777778888888888876655544444432 23344445555555443
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.015 Score=46.62 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS--AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677788888889999999999998876533222 4678888888999999999999999887753 2356667777
Q ss_pred HHHHHhcCCHHH
Q 045379 231 INLYGKASKSFM 242 (352)
Q Consensus 231 i~~~~~~g~~~~ 242 (352)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 777777776433
No 153
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.099 Score=47.58 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=80.9
Q ss_pred hcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHH
Q 045379 75 REVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~ 142 (352)
.++++..|..+|++.. .++..|--.+..=.++.....+..+..... .|-..+.+=-..|++..|.++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3566777888887654 445555555444444333333222222111 5555555556667778888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 143 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
+.-.+ ..|+...|++.|.-=.+...++.|..+++...-- .|++.+|--....=-+.|+...|..+|+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 76665 4578888888887777777777777777776553 25555555555554555555555555543
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.09 Score=48.57 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP-SAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
.+.....++++...-..--.-+|...|...-+..-+..|..+|.+..+.+..+ .+.+++++|..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677776643322233478888888888888999999999999988777 78888999997765 57899999999
Q ss_pred H-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 045379 214 R-MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI--CTYTALVNAFAREGLCEEAEEIFEQLQGA-- 288 (352)
Q Consensus 214 ~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~l~~~m~~~-- 288 (352)
- |++.| -+..--...+.-+...|+-..+..+|+.....++.|+. ..|..+|..=..-|++..+.++-+++...
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6 44432 23444466788888899999999999999988666554 58999999999999999999998887643
Q ss_pred -CCCCCHHHHHHHHHHHH
Q 045379 289 -GIEPDVYAYNALMEAYR 305 (352)
Q Consensus 289 -~~~p~~~~~~~li~a~~ 305 (352)
...+...+-..+++.|.
T Consensus 504 ~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYG 521 (656)
T ss_pred hhhcCCCChHHHHHHHHh
Confidence 13333344555666665
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.013 Score=51.08 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~ 142 (352)
...|......|...|++++|...|.+.. .++.+.+. -......|......|.+. ++++|.+.+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa----------~~~~~~~~------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAA----------DCYEKLGD------KFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHH----------HHHHHTT-------HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHH----------HHHHHcCC------HHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 3466777788888888888877776431 11111110 000111233333333222 444444444
Q ss_pred HHHHh----CCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 045379 143 LELLD----SRCIPT--EDTYALLLKAYCMS-GLLEKAEAVFREMRK----YGLPP-SAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 143 ~~m~~----~~~~p~--~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
++..+ .|- |+ ...+..+...|-.. |++++|.+.|++..+ .|.+- -...+..+...+.+.|++++|..
T Consensus 98 ~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44332 111 11 11333344455555 677777777776643 22110 12345566667777788888888
Q ss_pred HHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--cCCHHHH
Q 045379 211 IFQRMKRDCCQ-----PSTE-TYTLMINLYGKASKSFMALKLFNEMRSH--KCKPN--ICTYTALVNAFAR--EGLCEEA 278 (352)
Q Consensus 211 ~~~~m~~~~~~-----~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~--~~t~~~li~~~~~--~g~~~~a 278 (352)
+|++....... .+.. .+-..+-++...|++..|.+.+++.... +...+ ......||.+|-. ...++++
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88776653221 1222 2223344555667777777777776543 22222 2345566666644 2345555
Q ss_pred HHHHHHHH
Q 045379 279 EEIFEQLQ 286 (352)
Q Consensus 279 ~~l~~~m~ 286 (352)
..-|+.+.
T Consensus 257 v~~~d~~~ 264 (282)
T PF14938_consen 257 VAEYDSIS 264 (282)
T ss_dssp CHHHTTSS
T ss_pred HHHHcccC
Confidence 55555544
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.018 Score=42.84 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=48.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPT--EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP--PSAVVYNSYIDGLLKG 202 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~ 202 (352)
.++-..|+.++|+.+|++....|...+ ...+..+-+++...|++++|..++++.....-. .+......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 345556666666666666666665433 224555556666666666666666665543110 0112222223345556
Q ss_pred CCHHHHHHHHHHHH
Q 045379 203 GNPQKAVEIFQRMK 216 (352)
Q Consensus 203 g~~~~a~~~~~~m~ 216 (352)
|+.++|...+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666655444
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0065 Score=48.49 Aligned_cols=92 Identities=13% Similarity=-0.040 Sum_probs=69.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP--TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
.|..+...+...|++++|...|++.......| ...++..+-.++...|++++|.+.++...+.. +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 67778888889999999999999998654332 24588999999999999999999999988752 3344556666666
Q ss_pred HH-------cCCCHHHHHHHHH
Q 045379 199 LL-------KGGNPQKAVEIFQ 213 (352)
Q Consensus 199 ~~-------~~g~~~~a~~~~~ 213 (352)
+. +.|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 66 5666665444444
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.36 E-value=0.0072 Score=54.58 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=50.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 241 (352)
..+...|+++.|.+.|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665542 2344555555556666666666666666655542 224445555555666666666
Q ss_pred HHHHHHHHHHhC
Q 045379 242 MALKLFNEMRSH 253 (352)
Q Consensus 242 ~a~~l~~~m~~~ 253 (352)
+|+..|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0099 Score=53.68 Aligned_cols=101 Identities=17% Similarity=0.051 Sum_probs=76.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
...+...|++++|++.|++..+... -+...|..+..++...|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4556677889999999988887554 256688888888888899999999888887763 34567788888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
++|...|++..+. .|+.......
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999888875 3444433333
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.33 E-value=0.13 Score=47.55 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=30.6
Q ss_pred ccCccccccccccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCC
Q 045379 44 RGKGWKYGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSL 89 (352)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (352)
|.++-..... .-+.+|.+++....-+..--...+++.+.++|.++
T Consensus 35 ~~~~R~~YEq-~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 35 IDKVRETYEQ-LVNVFPSSPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333333 24567888888777777777788888888888765
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.017 Score=50.41 Aligned_cols=184 Identities=15% Similarity=0.149 Sum_probs=111.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS----RCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRK----YGLPPS-AV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~ 190 (352)
.|......|...|++++|.+.|.+.-+. +-+.. ...|.....+|.+ .++++|...+++..+ .|-... ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4555556666777777777777655321 11111 1244444444443 478888777777653 332111 34
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCH
Q 045379 191 VYNSYIDGLLKG-GNPQKAVEIFQRMKR----DCCQP-STETYTLMINLYGKASKSFMALKLFNEMRSHKCK-----PNI 259 (352)
Q Consensus 191 ~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----p~~ 259 (352)
.+..+...|... |++++|.+.|++..+ .+.+. -..++..+...+.+.|++++|.++|++....... ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 566777778888 899999999988654 23111 1345677889999999999999999998764322 222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 045379 260 C-TYTALVNAFAREGLCEEAEEIFEQLQGA--GIEPD--VYAYNALMEAYR 305 (352)
Q Consensus 260 ~-t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~--~~~~~~li~a~~ 305 (352)
. .+-..+-.+...|+...|.+.+++.... ++..+ ......||+++.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 2 2334455677789999999999998754 34333 345556666665
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.28 E-value=0.015 Score=45.13 Aligned_cols=94 Identities=10% Similarity=-0.104 Sum_probs=67.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
-.+..-+...|++++|.++|+.+....+ -+..-|-.|--+|-..|++++|...|....... +.+...+-.+-.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3444556677888888888887776543 245566677777777888888888888877765 35667777777788888
Q ss_pred CCHHHHHHHHHHHHHc
Q 045379 203 GNPQKAVEIFQRMKRD 218 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~ 218 (352)
|+.+.|.+-|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888776653
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.033 Score=52.78 Aligned_cols=138 Identities=12% Similarity=0.016 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHH
Q 045379 148 SRCIPTEDTYALLLKAYCMSG-----LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG--------NPQKAVEIFQR 214 (352)
Q Consensus 148 ~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 214 (352)
.+.+.+...|...+.+..... ..+.|..+|++..+.. +-....+..+..+|.... ++..+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 445678899999998865432 3678999999998863 233455555444443321 23344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 215 MKRD-CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 215 m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.... ..+.+...|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+.+....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3332 234456788888777778899999999999998874 78889999999999999999999999998765
No 164
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.027 Score=52.34 Aligned_cols=170 Identities=12% Similarity=0.032 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHH--Hh
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL--MINLY--GK 236 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~--~~ 236 (352)
++.+...|++++|.+..+++...+ +.+...+..-+-+..+.+++++|..+.+.-.. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 344555666777777666666654 44555566666666667777777644433221 011111 22333 35
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH--HH-h
Q 045379 237 ASKSFMALKLFNEMRSHKCKPNI-CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP-DVYAYNALMEAYRLIS--RM-H 311 (352)
Q Consensus 237 ~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~a~~~~~--~m-~ 311 (352)
.++.++|+..++ |..++. .+...-...+-+.|++++|+.+|..+.+++..- +...-..++.+-.... .+ .
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 677777777766 222222 244444556667777888888887776554321 1222222222222111 23 2
Q ss_pred cCCCC--CHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 312 MGCEP--DRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 312 ~~~~p--~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
....| +-..+....-.+...|++.+|++++.
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22333 22333344456778899999999986
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.024 Score=42.22 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=41.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPS--AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS----TETYTLMINLYG 235 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~ 235 (352)
.++-..|+.++|..+|++....|.... ...+-.+-..+...|++++|..++++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344445555555555555555554333 223334444555555555555555555443 122 111122223444
Q ss_pred hcCCHHHHHHHHHHHH
Q 045379 236 KASKSFMALKLFNEMR 251 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~ 251 (352)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.23 E-value=0.024 Score=43.98 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=61.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+..-+...|++++|.++|+-+.... +-+..-|-.|-.++-..|++++|+..|....... +-|...+-.+-.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3344556777777777777766543 2245556667777777777777777777776655 3456667777777777777
Q ss_pred HHHHHHHHHHHHHC
Q 045379 275 CEEAEEIFEQLQGA 288 (352)
Q Consensus 275 ~~~a~~l~~~m~~~ 288 (352)
.+.|.+.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766544
No 167
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.28 Score=48.87 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=125.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHH---------------------------HHcCCHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR--CIPTEDTYALLLKAY---------------------------CMSGLLE 171 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~---------------------------~~~g~~~ 171 (352)
--+....++...+-..+..+++++..-.. +.-+...-|.+|-.. ...+-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 33455666777777777777777765321 111222222333332 3333344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 172 KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 172 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
+|..+|+.. ..+....+.||.- .+.++.|.++-++.. ....|..+..+-.+.|...+|++-|-+..
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC
Confidence 444444432 2233333444332 334444444444332 45678888888888888888888775443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HHHHH-hcCCCCCHHHHHHHHHH
Q 045379 252 SHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR---LISRM-HMGCEPDRASYNIMVDA 327 (352)
Q Consensus 252 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~---~~~~m-~~~~~p~~~~~~~li~a 327 (352)
|+..|..++....+.|.|++-.+.+...++..-.|.+.+ .||-||+ -+.++ +.-.-||......+.+-
T Consensus 1132 ------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1132 ------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDR 1203 (1666)
T ss_pred ------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHH
Confidence 667899999999999999999999988888877776654 6777777 33344 44556788888888888
Q ss_pred HHHcCCcchhHHHHH
Q 045379 328 YGRAGLHEGKCSYSL 342 (352)
Q Consensus 328 ~~~~g~~~~A~~~~~ 342 (352)
|...|.++.|.=+|.
T Consensus 1204 cf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HhhhhhhHHHHHHHH
Confidence 888888887776654
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.083 Score=50.11 Aligned_cols=171 Identities=16% Similarity=0.094 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLE 144 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 144 (352)
+...++.+..-.=...+....-...+.|...|...+++.....+ ...++...|.++|++
T Consensus 309 i~~~Ia~aL~~~l~~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~---------------------~~~~~~~~A~~lle~ 367 (517)
T PRK10153 309 LSNSLSRALNQPWPERMQERLQQGLPHQGAALTLFYQAHHYLNS---------------------GDAKSLNKASDLLEE 367 (517)
T ss_pred HHHHHHHHhCccccHHHHHHHhccCCCCHHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHH
Confidence 34445555432222222333334445677777766665432111 012347789999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 145 LLDSRCIPT-EDTYALLLKAYCMSG--------LLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 145 m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
..+.. |+ ...|..+..++.... ++..+.+...+.... ..+.+...|..+.-.....|++++|...+++
T Consensus 368 Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~r 445 (517)
T PRK10153 368 ILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINK 445 (517)
T ss_pred HHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 98855 54 345555444443321 122333333333232 2344557787777777778999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045379 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTY 262 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 262 (352)
..+.+ |+...|..+...+...|+.++|.+.+++.... .|...||
T Consensus 446 Al~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 446 AIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 99874 68889999999999999999999999998765 4444444
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.044 Score=48.44 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
..+.+..|.-|...|+...|.++-.+. + .|+..-|-..+.+++..++|++-+++-.. + -++..|-.++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 346777788888899988888886664 2 37888899999999999999988876432 1 245788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
|.+.|+..+|......+ ++..-+..|.+.|++.+|.+.-.+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999998888762 2355677888888888887764443
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.017 Score=44.85 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG-----AGIEPDVYAYN 298 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~~~ 298 (352)
+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|.++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45556666666677777777766665542 44556666777777777777777777666532 36666665543
No 171
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.036 Score=46.51 Aligned_cols=131 Identities=14% Similarity=-0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----H
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS-----Y 195 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-----l 195 (352)
+.+.++....-.|.+.-...++++..+...+-++.....+++...+.|+.+.|...|++..+..-+.+..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44444444444555555555555555544444555555555555555555555555554443322222222222 2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
...|..++++..|...|.+..... +.|+...|.=.-+..-.|+...|++..+.|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222333444555555554444332 11233333322233333455555555555544
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0027 Score=41.94 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 045379 229 LMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+..+|.+.|++++|.++++.+
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333333
No 173
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.10 E-value=0.13 Score=48.59 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=106.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|+.+.-.+..-.++++|++.|.....-+. -|...|.-+--.-++.|+++.......++.+.. +.....|.....++.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQH 154 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 677777777777888888888887776432 245566666666667777777777766665542 233456666777777
Q ss_pred cCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc
Q 045379 201 KGGNPQKAVEIFQRMKRDC-CQPSTETYTLMI------NLYGKASKSFMALKLFNEMRSHKCKPNICT-YTALVNAFARE 272 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~~~ 272 (352)
-.|++..|..+.++..+.. -.|+...+.... ....+.|..++|.+.+..-... ..|-.. -..-...+.+.
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHH
Confidence 7788888888887776654 245555544332 2334556666666655544322 112222 23334556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045379 273 GLCEEAEEIFEQLQGAGIEPDVYAYNAL 300 (352)
Q Consensus 273 g~~~~a~~l~~~m~~~~~~p~~~~~~~l 300 (352)
+++++|..++..+... .||-.-|...
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 7777777777777765 4555554443
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.003 Score=41.75 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=27.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 166 MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
..|++++|.++|+++.+.. +-+....-.+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555442 224445555555555555555555555555554
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.007 Score=47.01 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR-----SHKCKPNICTYTA 264 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~t~~~ 264 (352)
.....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+-..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 556677778889999999999999998874 5688899999999999999999999999874 3599999876543
No 176
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.94 E-value=0.02 Score=43.07 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 045379 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALM 301 (352)
Q Consensus 255 ~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li 301 (352)
..|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4466666666666666666666666666666543 5544455555544
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.88 E-value=0.0072 Score=39.52 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=20.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREM 180 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (352)
+.+.|++++|.+.|++..+... -+...+..+..++...|++++|...|+++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444443331 12333444444444444444444444443
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.80 E-value=0.0088 Score=39.10 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
+...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999986 557888999999999999999999999999875
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.79 E-value=0.49 Score=44.82 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC----CchhhHHHHHHHHHHHhhccCcch----hhH----HhHHHHHHHHHHHcc
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP----PTHATWDDLINVSVQLRLNKKWDP----IVL----MSCVSILLIEAYGQK 132 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~----~~~----~~~~~~~li~~~~~~ 132 (352)
.+..+.-.+....++++|++.|.... .|...|..+--.=.++++.+..-. .++ ....|...+-++.-.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44666667777788888888886532 344555544333334444332111 111 111888888999999
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 133 SLHKKAEFTYLELLDSR-CIPTEDTYALLLK------AYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
|++..|..+.++..+.. -.|+...|.-... .....|.++.|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 99999999999998654 3466665543332 334577778887776654432 212222333556678889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHh
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTL-MINLYGKASKSFMAL-KLFNEMRS 252 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~-~l~~~m~~ 252 (352)
++|..++..++.. .||...|.- +..++.+..+.-++. .+|....+
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999987 466665554 445554343433444 56665544
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.78 E-value=0.049 Score=46.77 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=44.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT--EDTYALLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li 196 (352)
.|...+..+.+.|++++|...|+.+.+..+... ...+--+..+|...|++++|...|+.+.+. +.+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444444555555555555554332110 234444555555555555555555555432 1111222233333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 181
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.033 Score=41.91 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 045379 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-HKCKPNICTYTALVNAF 269 (352)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~t~~~li~~~ 269 (352)
...|+..+..+++.+|+..|++..|+++.+...+ .+++.+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456666666666666666666666666665543 34555555666665543
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.69 E-value=0.0089 Score=40.72 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=51.6
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (352)
||.+..+++.+...|...|++++|+..|++.. ......+ +.......+++.+...|...|++++|
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al----------~~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A 65 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKAL----------DIEEQLG-----DDHPDTANTLNNLGECYYRLGDYEEA 65 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------HHHHHTT-----THHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHC-----CCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45667789999999999999999999888641 1111111 11122233788888999999999999
Q ss_pred HHHHHHHHh
Q 045379 139 EFTYLELLD 147 (352)
Q Consensus 139 ~~l~~~m~~ 147 (352)
++.+++..+
T Consensus 66 ~~~~~~al~ 74 (78)
T PF13424_consen 66 LEYYQKALD 74 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887653
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.052 Score=46.61 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHH
Q 045379 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS----TETYTLMINLYGKASKSFMALKLFNEMRSH--KCKPNICTY 262 (352)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~t~ 262 (352)
...|...+..+.+.|++++|...|+.+.+. .|+ ..++-.+...|...|++++|...|+.+.+. +.+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 455666666667778899999999988876 333 246677888888899999999999888753 112234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 263 TALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
-.+...+...|+.++|..+|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55667777889999999999988765
No 184
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.34 Score=46.66 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCcchhHHHH
Q 045379 323 IMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 323 ~li~a~~~~g~~~~A~~~~ 341 (352)
-...+|.+.|++.+|.++-
T Consensus 775 ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 775 EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 5778888888888888764
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.019 Score=37.95 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=6.3
Q ss_pred HHHcCCCHHHHHHHHHH
Q 045379 198 GLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~ 214 (352)
.+...|++++|+..|++
T Consensus 12 ~~~~~~~~~~A~~~~~~ 28 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEK 28 (69)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.50 E-value=0.018 Score=38.10 Aligned_cols=64 Identities=23% Similarity=0.215 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG-LCEEAEEIFEQLQG 287 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~~ 287 (352)
+..+|..+-..+...|++++|+..|++..+.. +-+...|..+-.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999998864 346678999999999999 79999999998865
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.46 E-value=0.31 Score=44.28 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR-CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
+|...|++..+..-.+.|..+|-+..+.+ ..+++..+++.|.-++ .|+..-|..+|+-=... ++.+..-.+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 55555555555555666666666666555 3455555555555444 34555555555442222 111222223444455
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPS--TETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+.++-..|..+|+...++ +..+ ...|..+|.--...|++..+..+-+.|.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5555555666666533321 0111 23555556555556666555555555543
No 188
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.44 E-value=0.18 Score=50.08 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=96.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN--SYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~ 198 (352)
.|..|...|....+...|.+.|....+-+. .+......+.+.|++...++.|..+.-..-+.. +.-...+| ..--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 677777777777777777777777666432 245566777777777777777777722221110 01111111 23334
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV--NAFAREGLCE 276 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li--~~~~~~g~~~ 276 (352)
|.+.++...|..-|+.-.... +-|...|..+..+|.+.|.+..|.++|.+.... .|+. +|...- -.-+..|.++
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 556667777777777665543 336677788888888888888888888776553 3433 232222 2234567788
Q ss_pred HHHHHHHHHH
Q 045379 277 EAEEIFEQLQ 286 (352)
Q Consensus 277 ~a~~l~~~m~ 286 (352)
+|+..+....
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 8877777665
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.39 E-value=0.81 Score=44.31 Aligned_cols=196 Identities=12% Similarity=-0.023 Sum_probs=128.6
Q ss_pred chhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 045379 92 THATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYALLLK 162 (352)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~ 162 (352)
+...|..+--+....|+.....+.++... .|+.+-..|.-.|.-..|..+++.-......|+ ...+-..-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 56666666666666777666555555443 888898999999999999999887765443343 334444444
Q ss_pred HHHH-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHHcCCCCCHHH
Q 045379 163 AYCM-SGLLEKAEAVFREMRKY--GL--PPSAVVYNSYIDGLLKGG-----------NPQKAVEIFQRMKRDCCQPSTET 226 (352)
Q Consensus 163 ~~~~-~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~ 226 (352)
.|.+ .+..++++..-.+.... +. ......|-.+--+|...- ...++.+.+++..+.+.. |..+
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~ 480 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLV 480 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchH
Confidence 4544 45666666665555441 10 112234444444444321 244677777777665422 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.-.+---|+..++++.|.+..++..+.+-.-+...|..+...+..++++.+|+.+.+...+.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33444467788899999999999988866778889999999999999999999998876543
No 190
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.79 Score=42.50 Aligned_cols=155 Identities=17% Similarity=0.030 Sum_probs=78.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA-VVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~ 199 (352)
+...+..+|.+.++++.+...|.+.......|+.. .+....+++.+..+...-. .|.. .-...--+.+
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEA 368 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHH
Confidence 33334456666778888888887766543333321 1122223333322222211 1111 1111224455
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|++-.+...+.. ++....|..=..++....++++|.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777766664 4456667777777777777776666655555441 222223333333333444566666
Q ss_pred HHHHHHHHC
Q 045379 280 EIFEQLQGA 288 (352)
Q Consensus 280 ~l~~~m~~~ 288 (352)
+.|.+.++.
T Consensus 447 eay~eale~ 455 (539)
T KOG0548|consen 447 EAYQEALEL 455 (539)
T ss_pred HHHHHHHhc
Confidence 666655543
No 191
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.36 E-value=0.045 Score=46.37 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS-FMALKLFNEMR 251 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~l~~~m~ 251 (352)
+-+.+++++|...|+.||..+-..|++++++.+.. .+..++.-.|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 45788888888888888888888888888887764 33444444443
No 192
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.34 E-value=0.052 Score=46.02 Aligned_cols=120 Identities=16% Similarity=0.297 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045379 221 QPSTETYTLMINLYGKA-----SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVY 295 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 295 (352)
..|..+|-..+..+... +.++=....++.|.+.|+.-|..+|+.||+.+-+..-+-. .+|+..--. .|-..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F~H--YP~QQ 139 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVFLH--YPQQQ 139 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHHhh--Cchhh
Confidence 34666777777766543 4556666667777777888888888887777654322110 001100000 00000
Q ss_pred HHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHcCCc-chhHHHHHHHhhccC
Q 045379 296 AYNALMEAYRLISRM-HMGCEPDRASYNIMVDAYGRAGLH-EGKCSYSLVELSVKH 349 (352)
Q Consensus 296 ~~~~li~a~~~~~~m-~~~~~p~~~~~~~li~a~~~~g~~-~~A~~~~~~~~~~~~ 349 (352)
+ .+..++++| ..|+.||.++-..|+.++.+.|.. .+..+++.-||..++
T Consensus 140 --~---C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfkn 190 (406)
T KOG3941|consen 140 --N---CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFKN 190 (406)
T ss_pred --h---HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhhcc
Confidence 0 011166777 667777777777777777776643 334444444454444
No 193
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.32 E-value=0.19 Score=44.04 Aligned_cols=152 Identities=14% Similarity=0.253 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCC-
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCM--SG----LLEKAEAVFREMRKYGL---PPSAVVYNSYIDGLLKGGN- 204 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 204 (352)
+++...+++.|.+.|++-+..+|.+....... .. ....|.++|+.|++... .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56778899999999999888877764444443 22 35678999999998742 3445667776654 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--
Q 045379 205 ---PQKAVEIFQRMKRDCCQPST--ETYTLMINLYGKASK--SFMALKLFNEMRSHKCKPNICTYTALVNA-FAREGL-- 274 (352)
Q Consensus 205 ---~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~-- 274 (352)
.+.++.+|+.+.+.|+..+- .....++..+..... ..++.++++.+.+.|+++....|..+--. +...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 46788889999998876543 344444444433333 45889999999999999998888776443 333333
Q ss_pred -HHHHHHHHHHHHHC
Q 045379 275 -CEEAEEIFEQLQGA 288 (352)
Q Consensus 275 -~~~a~~l~~~m~~~ 288 (352)
.+...++.+.+.+.
T Consensus 236 ~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHhhC
Confidence 44455555555543
No 194
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.31 E-value=0.34 Score=37.14 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
.++..+.+.+.+.....+++.+.+.+ ..+...++.++..|++.+ .++....++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444445555555555554444 234445555555555432 2222222221 012222333455555555
Q ss_pred CHHHHHHHHHHH
Q 045379 239 KSFMALKLFNEM 250 (352)
Q Consensus 239 ~~~~a~~l~~~m 250 (352)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.014 Score=39.68 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRSH----KC-KPN-ICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
.+++.+-..|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666655432 11 122 3456666666666677777766666654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.083 Score=45.19 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=73.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045379 163 AYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM 242 (352)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 242 (352)
-..+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|.+-.+.-+... +-...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3667788888888888888752 3456667777888888888888888877776642 2235678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 045379 243 ALKLFNEMRSHKCKPNICTYTALVN 267 (352)
Q Consensus 243 a~~l~~~m~~~g~~p~~~t~~~li~ 267 (352)
|++.|++..+. .|+-.+|..=+.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHH
Confidence 88888877653 677666655443
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.17 E-value=0.58 Score=38.54 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=42.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCI--PTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (352)
...+...|++.+|.+.|+.+...... --....-.+..++.+.|+++.|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566789999999999999865322 23446777888899999999999999998765
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.17 E-value=0.78 Score=45.83 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 045379 94 ATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAY 164 (352)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~ 164 (352)
..|..|...|....+..++.+.+.... .+....+.|++..++++|..+.-..-+.... .-...|.-+--.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 356666666655544444444333222 7788888888988998888883222221110 0111233334445
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHH
Q 045379 165 CMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL--MINLYGKASKSFM 242 (352)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~ 242 (352)
.+.++...+..-|+...... +-|...|..+..+|.++|++..|.++|.+...- .|+. +|.. ....-+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 66677777777777766653 456678888899999999999999999877654 3322 2222 2233466788888
Q ss_pred HHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q 045379 243 ALKLFNEMRSH------KCKPNICTYTALVNAFAREGLCEE-------AEEIFEQLQGAGIEPDVYAYNALMEAYRLISR 309 (352)
Q Consensus 243 a~~l~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~-------a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~ 309 (352)
|...+...... +..--..++-.+...+...|-..+ +.+.|.-.......-+...|-.+=++|.+|-.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 88888776442 111122334444444444444333 44444433334445566667777777877777
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc
Q 045379 310 MHMGCEPDRASYNIMVDAYGRAGLH 334 (352)
Q Consensus 310 m~~~~~p~~~~~~~li~a~~~~g~~ 334 (352)
.+.. .|+.....++..-+...|..
T Consensus 729 ~e~~-~vn~h~l~il~~q~e~~~~l 752 (1238)
T KOG1127|consen 729 EEPS-IVNMHYLIILSKQLEKTGAL 752 (1238)
T ss_pred hccc-chHHHHHHHHHHHHHhcccC
Confidence 7522 55555554444434444433
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.52 Score=40.53 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHH
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS---KSFMALKLFNEMRSHKCKPNICTYT 263 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~t~~ 263 (352)
-|...|-.|-..|...|+.+.|..-|.+-.+.- .++...+..+..++.... ...++..+|+++.... +-|..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 344555555555555555555555555444321 223333333333332221 2244555555554432 12333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 264 ALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 264 ~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.|...+..+|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4444455555555555555555543
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.054 Score=36.14 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=19.4
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
.+.+++++|.++++.+.+.+ +.+...+...-.++.+.|++++|.+.|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444433331 1133333333334444444444444444433
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.079 Score=45.33 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=82.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
+-..+.+++++|+..|.+..+-.. -|.+-|..-..+|++.|.++.|++=-+.....+ +-...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 446678999999999999998654 378888999999999999999998877776653 234678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
+|.+.|++.++. .|+-.+|-.=
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~n 188 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSN 188 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHH
Confidence 999999998875 6766666443
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.07 E-value=0.062 Score=35.85 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYA 296 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 296 (352)
-..|.+.+++++|.+.++.+...+ +.+...+......+.+.|++++|.+.++...+. .|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 357889999999999999998874 446667888899999999999999999999876 444433
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.00 E-value=0.62 Score=37.29 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHH
Q 045379 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPSTETYT 228 (352)
Q Consensus 150 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~ 228 (352)
.-|++..-..|..+..+.|+..+|...|.+...--+-.|....-.+.++....+++..|...++++.+.+- .-+..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 44777777788888888888888888888877655566777777788888888888888888888877531 01223445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
.+..++...|.+..|+.-|+...+. -|+...-...-..+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5677788888888888888888765 455544444445556777766665544444
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.90 E-value=0.052 Score=51.10 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 240 (352)
+..+..+|-.|.+.++-+++... +..+...+...+.+...+..|-++|..|-+. ..++..+...++|
T Consensus 723 i~i~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W 789 (1081)
T KOG1538|consen 723 IEICGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRW 789 (1081)
T ss_pred hhhhhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccc
Confidence 34455556556555555544332 2244444444455556666666666666531 2345556666677
Q ss_pred HHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 241 FMALKLFNEMRSHKCKPNIC-----------TYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 241 ~~a~~l~~~m~~~g~~p~~~-----------t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+|..+-+...+. .||.. -|.-.=.+|.++|+-.+|.++++++...
T Consensus 790 ~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 790 DEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 7776666655442 22221 1333445666777777777777777544
No 205
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.77 E-value=2.3 Score=42.09 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=92.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
|..++-..|...|+.++|..+|++..... |+......+..+|.+-+.+.+-.++-=+|-+ ..+-+...+-++++.+.
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 55666666777777777777777766543 5566666666666666665544333333322 13333444444444443
Q ss_pred cCCC----------HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHH
Q 045379 201 KGGN----------PQKAVEIFQRMKRDC-CQPSTETYTLMINLYGKASKSFMALKLF-NEMRSHKCKPNICTYTALVNA 268 (352)
Q Consensus 201 ~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~-~~m~~~g~~p~~~t~~~li~~ 268 (352)
..-. ..-|.+.++.+.+.+ -.-+..-.-.-....-..|++++|.+++ ....+.-...+...-+.-+..
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl 235 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL 235 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3211 234555666665543 1112222222233445667788888877 333333333444445566777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 045379 269 FAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 269 ~~~~g~~~~a~~l~~~m~~~~ 289 (352)
+...++|.+..++-.++...|
T Consensus 236 lk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 236 LKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcChHHHHHHHHHHHHhC
Confidence 777888888888888887764
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.74 E-value=0.81 Score=36.65 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHH
Q 045379 185 LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK---CKPNICT 261 (352)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~t 261 (352)
.-|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4678777778999999999999999999999876666788888899999999999999999999998753 2344 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 262 YTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.-.+.+.+...|+.++|..-|+.....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 666778999999999999999998765
No 207
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.69 E-value=1.4 Score=38.86 Aligned_cols=220 Identities=12% Similarity=0.098 Sum_probs=136.0
Q ss_pred HHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 045379 72 FVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCI 151 (352)
Q Consensus 72 ~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 151 (352)
..-++|.++.|..=|+.+.....+-+....+..+.-.. ......-..+..+...|+...|+.....+.+..+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~- 186 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP- 186 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-
Confidence 34578888888887776642111111122222111110 0011223345556778999999999999998543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH-H---
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTET-Y--- 227 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~--- 227 (352)
-|...|..-..+|...|.+..|+.=++...+..- .+..++--+-..+...|+.+.++...++-++. .||-.. |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 5888888889999999999999887777666533 34455555666777888988888888887764 344322 1
Q ss_pred HH-------H--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 045379 228 TL-------M--INLYGKASKSFMALKLFNEMRSHKCKPNICT---YTALVNAFAREGLCEEAEEIFEQLQGAGIEPD-V 294 (352)
Q Consensus 228 ~~-------l--i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~ 294 (352)
-. | +......++|-++++-.+...+..-+..... +..+-.++...|++.+|++.-.+..+- .|| +
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHH
Confidence 11 1 2334456777777777777766532212222 344556667788899999888888753 444 4
Q ss_pred HHHHHHHHHH
Q 045379 295 YAYNALMEAY 304 (352)
Q Consensus 295 ~~~~~li~a~ 304 (352)
.++---.+||
T Consensus 342 ~~l~dRAeA~ 351 (504)
T KOG0624|consen 342 QVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.73 Score=35.28 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=88.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
..++..+.+.+....+..+++.+...+. .+....+.++..|++.+ .+...+.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4567778888899999999999998774 68889999999999864 3444444442 12334455688888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA-SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
+.++++.-++.++.. ....... +... ++++.|.+.+.+- .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~----~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVT----LIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHH----HHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 889999988888753 2223333 3334 7888888877752 256678888877654
No 209
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=1 Score=41.82 Aligned_cols=164 Identities=14% Similarity=0.042 Sum_probs=116.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH------
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS------ 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~------ 194 (352)
-...+.++..+..++..|.+-+....+.. -+..-++..-.++...|.+.+....-+...+.|-. ...-|+.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 56678888888899999999999888755 45556677778888888888777766666555421 1122222
Q ss_pred -HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHH
Q 045379 195 -YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY-------------------------TLMINLYGKASKSFMALKLFN 248 (352)
Q Consensus 195 -li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~l~~ 248 (352)
+-.+|.+.++++.+...|++.......|+..+- ..=-+.+.+.|++..|++.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 333566677888888888876654434433221 112456678899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 249 EMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 249 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
++.... +-|...|..-..+|.+.|++..|+.=.+...+.
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 988775 557788999999999999999988876666544
No 210
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=1.3 Score=37.15 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHh----hccCcchhhHHhHHHHHHHHHHHccCCH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLR----LNKKWDPIVLMSCVSILLIEAYGQKSLH 135 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~li~~~~~~g~~ 135 (352)
...|..-..+|....++++|...+.+-- .+-.+|-....++.+.+ ....+.++.. .|+.-...|..+|..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvd---l~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVD---LYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhCCc
Confidence 3366667778888888998877665432 23333333333333322 2222222222 556666666777766
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY---G--LPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
+.|--.+++.-+ .....++++|+++|.+...- + ...-...+..+-+.+.+..++++|-.
T Consensus 108 dtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 108 DTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred chHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 666555544332 22345566666666664321 1 01112334555566777777777766
Q ss_pred HHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 211 IFQRMKRD----CCQPST-ETYTLMINLYGKASKSFMALKLFNEMRSHK---CKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 211 ~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
.|.+-... .-.++. ..|-..|-.|.-..++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++..+.
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 66543321 112222 346667777888889999999999855432 234567888899888 567878776665
Q ss_pred H
Q 045379 283 E 283 (352)
Q Consensus 283 ~ 283 (352)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.3 Score=44.64 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSA----VVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
+...++.+..+|...|++++|...|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777664 3442 34777777777777777777777777664
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.54 Score=43.71 Aligned_cols=130 Identities=17% Similarity=0.096 Sum_probs=78.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
.+.++..+-+.|..+.|+++-..-. .-.+...+.|+++.|.++.++ .++...|..|-+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 4556666777777777765543322 123445566777777766443 2355677777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEI 281 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 281 (352)
+|+++-|++.|++.. -|..|+--|.-.|+.+...++.+.....|- ++....++.-.|++++..++
T Consensus 360 ~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 777777777777765 255666666777777776666666665542 55555555666777766666
Q ss_pred HHH
Q 045379 282 FEQ 284 (352)
Q Consensus 282 ~~~ 284 (352)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.39 E-value=1.5 Score=37.31 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVY---NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 229 (352)
++..+-.....+...|++++|.+.|+++...-- -+.... -.+..+|.+.+++++|...+++..+..-.-...-+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 444444455556778999999999999988532 222332 3466788999999999999999987632111223333
Q ss_pred HHHHHHh--c---------------CC---HHHHHHHHHHHHhCCCCCCHH------HH------------HHHHHHHHh
Q 045379 230 MINLYGK--A---------------SK---SFMALKLFNEMRSHKCKPNIC------TY------------TALVNAFAR 271 (352)
Q Consensus 230 li~~~~~--~---------------g~---~~~a~~l~~~m~~~g~~p~~~------t~------------~~li~~~~~ 271 (352)
.+.+.+. . .+ ..+|++.|+++.+. =|++. .. -.+...|.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221 1 12 24566777777654 23332 11 122233555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.|.+..|..-++.+.+. -| +-+........++.+|...|..++|.+...
T Consensus 188 ~~~y~AA~~r~~~v~~~--Yp--------------------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRD--YP--------------------DTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred cCchHHHHHHHHHHHHH--CC--------------------CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56665555555555543 11 123355666788899999999999988754
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.34 E-value=1.3 Score=36.44 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHhcCCC---Cc-hhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHH
Q 045379 68 QILRFVQREVDSNTIWDAFDSLP---PT-HATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
.....+...|++++|...|+.+. |+ ...=. +.-.++.++.+.|++++|...++
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~-----------------------A~l~la~a~y~~~~y~~A~~~~~ 66 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQ-----------------------AQLMLAYAYYKQGDYEEAIAAYE 66 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHH-----------------------HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHH-----------------------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455567899999999998763 21 11111 34456788999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 045379 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP---PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC 220 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 220 (352)
++.+.-+.-...-+...+.+.+......... ....... --...+..++.-|=...-..+|...+..+.+.
T Consensus 67 ~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-- 139 (203)
T PF13525_consen 67 RFIKLYPNSPKADYALYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-- 139 (203)
T ss_dssp HHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH--
Confidence 9987543322223333333332211111110 0000000 00134555555566666666666666655542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI----CTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~ 279 (352)
=..---.+..-|.+.|.+..|..-++.+.+. =|++ .....++.+|.+.|..+.+.
T Consensus 140 --la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 --LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0111123566788888888888888888764 2333 34577778888888777443
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.98 Score=43.65 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HHHHH---hcCCCCCHHHHHHHHHHHH
Q 045379 256 KPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR---LISRM---HMGCEPDRASYNIMVDAYG 329 (352)
Q Consensus 256 ~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~---~~~~m---~~~~~p~~~~~~~li~a~~ 329 (352)
....-+.+--+..+...|+..+|.++-.+.+ .||-..|..=+.+++ -|+++ .+. +-.+.-|.=.+.+|.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks-kksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS-KKSPIGYLPFVEACL 755 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc-cCCCCCchhHHHHHH
Confidence 3344456666667777777777777777765 677777777777776 22222 111 222556777888889
Q ss_pred HcCCcchhHHHHH
Q 045379 330 RAGLHEGKCSYSL 342 (352)
Q Consensus 330 ~~g~~~~A~~~~~ 342 (352)
+.|+.+||.+++.
T Consensus 756 ~~~n~~EA~KYip 768 (829)
T KOG2280|consen 756 KQGNKDEAKKYIP 768 (829)
T ss_pred hcccHHHHhhhhh
Confidence 9999999988864
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.21 E-value=2.4 Score=38.76 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY-TLM 230 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l 230 (352)
-...|...|.+-.+..-.+.|..+|-+..+.| +.+++.+++++|..++ .|+...|..+|+-=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 45577888888888888999999999999998 6788899999998665 56888999999864433 3454444 567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPN--ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
+.-+...++-+.|..+|+.-... +..+ ...|..+|..=..-|++..+..+-+.|.+. .|...+.......|+
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77788889999999999954332 1122 457999999999999999998888888764 666666666666665
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=1.5 Score=41.34 Aligned_cols=184 Identities=16% Similarity=0.152 Sum_probs=113.5
Q ss_pred ccccccccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCC--chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHH
Q 045379 49 KYGSGFVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLPP--THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLI 126 (352)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li 126 (352)
.++-++..=....++|....|+...+=.||=+.+++.+..... +...- +... ....|+..+
T Consensus 174 ~~G~G~f~L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~---la~L--------------~LL~y~~~~ 236 (468)
T PF10300_consen 174 YFGFGLFNLVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP---LAAL--------------VLLWYHLVV 236 (468)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH---HHHH--------------HHHHHHHHH
Confidence 3444444444445566667777777777777777776654321 11110 0000 001566666
Q ss_pred HHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHH
Q 045379 127 EAYGQ----KSLHKKAEFTYLELLDSRCIPTEDTYALLL-KAYCMSGLLEKAEAVFREMRKY--GL-PPSAVVYNSYIDG 198 (352)
Q Consensus 127 ~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~--g~-~~~~~~~~~li~~ 198 (352)
..+.- ....+.|.+++..+.++- |+...|...- +.+...|++++|.+.|+..... .. ......+--+...
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 55444 467889999999998754 7766665443 4566789999999999976532 11 1122334456666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHHh
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI-NLYGKASKS-------FMALKLFNEMRS 252 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~-------~~a~~l~~~m~~ 252 (352)
+.-..+|++|...|..+.+.. .-+...|.-+. .++...|+. ++|.++|.+...
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888899999999999998753 22344444433 334456766 888888888754
No 218
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.10 E-value=1.3 Score=35.03 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
.+.++.+.+.+++|+...+..+++.+.+.|++... .++.+.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566667788999999999999999999986654 445556666666666655544433 233344444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
=...+..++..+...|++-+|.++.+..... +......++.+-.+.++...-..+|+-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1114667788888999999999988875332 2223355677777777777666666666553
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=95.08 E-value=1.2 Score=34.93 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=54.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
+...|++++|+.+|.-+.-.++ -+..-|..|-.+|-..+++++|+..|......+ .-|...+-..-.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 4456777777777776655432 244555666666666777777777776654443 23444455556666777777777
Q ss_pred HHHHHHHHH
Q 045379 279 EEIFEQLQG 287 (352)
Q Consensus 279 ~~l~~~m~~ 287 (352)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777665
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.08 E-value=0.17 Score=46.23 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045379 186 PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST----ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT 261 (352)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 261 (352)
+.+...++.+-.+|.+.|++++|...|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456788999999999999999999999998886 4553 469999999999999999999999998752 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 045379 262 YTALVN--AFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 262 ~~~li~--~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
|..+.. .+..-.+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122344577788888887764
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.52 Score=40.54 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG---NPQKAVEIFQRMKRDCCQPSTETYTL 229 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ 229 (352)
|...|..|-.+|...|+.+.|..-|....+.. +++...+..+..++..+. .-.++..+|++..... +-++.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777776642 344455555544444332 2456777777777654 235666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 230 MINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
|-..+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777777778888888888777765
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.01 E-value=1.1 Score=33.71 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045379 224 TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
..-.+..+.....+|+-+.-.++..++.+. -++++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344566677777888888888888877653 367777777888888888888888888888887775
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.92 E-value=0.78 Score=42.67 Aligned_cols=131 Identities=11% Similarity=-0.024 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045379 96 WDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEA 175 (352)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 175 (352)
.+.+++-+.+.|..+.+..+... -..-.+...+.|+++.|.++-++. ++...|..|-+.+.++|+++.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---~~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~ 368 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---PDHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEE 368 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----HHHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---hHHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444443333332 133445667889999998665443 578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 176 VFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 176 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.|.+.. -+..|+-.|.-.|+.+.-.++-+.....| -+|....++.-.|+.++..+++.+-
T Consensus 369 c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 369 CYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 998853 46677778888999888888887777665 3666667777778888888877653
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.91 E-value=0.47 Score=38.11 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTE--DTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
.+..+.+.|.+.|+.++|.+.|.++.+....|.. ..+-.+|..+.-.+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788889999999999999999998876554443 3677888888889999988888777654
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.76 E-value=1.2 Score=38.95 Aligned_cols=128 Identities=13% Similarity=0.229 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCH
Q 045379 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK--GG----NPQKAVEIFQRMKRDCC---QPSTETYTLMINLYGKASKS 240 (352)
Q Consensus 170 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 240 (352)
+++...+++.|.+.|++-+..+|-+....... .. ...+|..+|+.|++... .++-.++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999998887777654333333 22 35679999999998642 2344556666554 44443
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 045379 241 ----FMALKLFNEMRSHKCKPNIC--TYTALVNAFAREGL--CEEAEEIFEQLQGAGIEPDVYAYNA 299 (352)
Q Consensus 241 ----~~a~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~ 299 (352)
+.++.+|+.+.+.|...+-. ..+.++..+..... +.++.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 66788888888878764433 33444443332222 5589999999999999887766654
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.74 E-value=4.3 Score=39.28 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 313 GCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 313 ~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+.|....|+.|..+-+....+...-+-|.
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfm 1081 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFM 1081 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 456777777777666666555555544443
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=94.62 E-value=0.96 Score=35.49 Aligned_cols=90 Identities=12% Similarity=-0.077 Sum_probs=60.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
..-+...|++++|..+|.-+.-.++- +..-|..|..+|-..++++.|...|...-..+. -|...+-..-.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33456778888888888877765432 445566666667777888888888777655432 3334444556677777888
Q ss_pred HHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKR 217 (352)
Q Consensus 206 ~~a~~~~~~m~~ 217 (352)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888777776
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.54 E-value=4.2 Score=38.29 Aligned_cols=163 Identities=21% Similarity=0.115 Sum_probs=110.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR-CIPT-----EDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~ 190 (352)
....+++..+=.||-+.+++++.+..+.+ +.-. .-.|+.++..++. ....+.+.++++.+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 66677788888999999999998877543 3311 1245555554444 34678899999999886 46655
Q ss_pred HHHH-HHHHHHcCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045379 191 VYNS-YIDGLLKGGNPQKAVEIFQRMKRDCC---QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266 (352)
Q Consensus 191 ~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 266 (352)
.|.. --+.+...|++++|.+.|++...... ......+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5553 34556678999999999997553110 1123344456667888899999999999998753 23344444443
Q ss_pred HH-HHhcCCH-------HHHHHHHHHHH
Q 045379 267 NA-FAREGLC-------EEAEEIFEQLQ 286 (352)
Q Consensus 267 ~~-~~~~g~~-------~~a~~l~~~m~ 286 (352)
.+ +...|+. ++|.++|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 3346766 88999998874
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=2.8 Score=35.57 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-----H
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL-----M 230 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-----l 230 (352)
..+.++....-.|.+.-...++++.++..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..++++ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666778888888999998877677788888999999999999999999998876433444444443 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~ 304 (352)
-..|.-++++.+|...+.+..... ..|+...|.=.-...-.|+..+|.+.+..|.+. .|...+-++++-.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHH
Confidence 455667788888998888876543 234444454444445578999999999999865 56666655555333
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.36 E-value=3 Score=42.70 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=80.8
Q ss_pred CHHHHHHHhcCCCCchhhHHHHHHHHHHH---hhccCcchhhHHhHHHHHHHHHHHccC--CHHHHHHHHHHHH--hCC-
Q 045379 78 DSNTIWDAFDSLPPTHATWDDLINVSVQL---RLNKKWDPIVLMSCVSILLIEAYGQKS--LHKKAEFTYLELL--DSR- 149 (352)
Q Consensus 78 ~~~~A~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~l~~~m~--~~~- 149 (352)
|++-|..+-++.+.|+.-|-.+++-+-++ .+.-+++..+. -|...+....+.| -++++..+.++=. ..+
T Consensus 852 Dl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~---ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 852 DLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLK---RYEDALSHLSECGETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred chHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHH---HHHHHHHHHHHcCccccHHHHHHHHhcccchhhh
Confidence 34444444444455555555555544321 11111222221 3444444444444 3444444332211 001
Q ss_pred --CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 045379 150 --CIPTEDTYALLLKAYC----MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS 223 (352)
Q Consensus 150 --~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 223 (352)
.+|+...+..+..+|+ +.+.+++|--.|+..-+ ..-.+.+|..+|+|++|..+..++... -+
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~d 996 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KD 996 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HH
Confidence 2467766666665554 34566666655554321 223456677777777777777776532 12
Q ss_pred HHH--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 224 TET--YTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 224 ~~~--~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
... -..|++-+...+++-+|-++..+..+
T Consensus 997 e~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 997 ELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 222 25577777777777777777766543
No 231
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.17 E-value=3.8 Score=36.22 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=166.8
Q ss_pred HHhcCCHHHHHHHhcCC-CCchhhHHHHHH---HHHHHhhccCcchhhHHhH-----HHHH---HHHHHHccCCHHHHHH
Q 045379 73 VQREVDSNTIWDAFDSL-PPTHATWDDLIN---VSVQLRLNKKWDPIVLMSC-----VSIL---LIEAYGQKSLHKKAEF 140 (352)
Q Consensus 73 ~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~-----~~~~---li~~~~~~g~~~~a~~ 140 (352)
+.-.|.+.+|+.-|... .-|+..|.++.+ .|..+|+...+..=+.... -+.+ -...+.++|.+++|..
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH
Confidence 33445566666555543 245555655544 3445554433222111111 1222 2245778999999999
Q ss_pred HHHHHHhCCCC------------CCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 141 TYLELLDSRCI------------PTEDT--YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 141 l~~~m~~~~~~------------p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
=|+.+.+.... +.... ....+..+...|+...|++....+.+. .+.+...|..-..+|...|.+.
T Consensus 128 DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 128 DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHH
Confidence 99999875431 11112 223445566678999999999998886 3567888888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHH-------H--HHHHHhcC
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT----YTA-------L--VNAFAREG 273 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t----~~~-------l--i~~~~~~g 273 (352)
.|+.=++...+.. ..++.++--+-..+...|+.+.++...++..+. .||-.. |.. | +......+
T Consensus 207 ~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 207 KAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998887766543 335666767778888999999999999888765 344321 211 1 12345678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHH
Q 045379 274 LCEEAEEIFEQLQGAGIEPDVYAYNALM---EAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSY 340 (352)
Q Consensus 274 ~~~~a~~l~~~m~~~~~~p~~~~~~~li---~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~ 340 (352)
+|.++++-.+...+.........|+..= ..+. .-++...--+.|..++.--.+||.-...+++|..-
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~d 363 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHD 363 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8888888888887664332333343322 1111 12222112233588888888899988889998887
Q ss_pred HH
Q 045379 341 SL 342 (352)
Q Consensus 341 ~~ 342 (352)
|.
T Consensus 364 ye 365 (504)
T KOG0624|consen 364 YE 365 (504)
T ss_pred HH
Confidence 75
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=1.3 Score=37.67 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=50.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCI--PTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPP-SAVVYNSYID 197 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~-~~~~~~~li~ 197 (352)
|+.-++.+ +.|++.+|...|....+.... -....+--|..++..+|++++|..+|..+.+. +-.| -...+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55544433 445566666666666654321 12234444566666666666666666665543 1111 1234444445
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 045379 198 GLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~ 218 (352)
...+.|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666666554
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=2.1 Score=38.56 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..+..+.-+|.+.+++..|++.-++.++.+ ++|....--=-.+|...|+++.|...|+.+.+. .|+-...+.=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 566677777888888888888888777664 446666555667777778888888888887764 45554444433333
Q ss_pred H-hcCC-HHHHHHHHHHHH
Q 045379 270 A-REGL-CEEAEEIFEQLQ 286 (352)
Q Consensus 270 ~-~~g~-~~~a~~l~~~m~ 286 (352)
. +... .+...++|..|.
T Consensus 335 ~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3 3222 233466666664
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.89 E-value=0.96 Score=38.98 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045379 224 TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG-----AGIEPDVYAYN 298 (352)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~~~ 298 (352)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|...|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466677777777777777777777776553 45666777777777777777777777777654 37777776666
Q ss_pred HHHHH
Q 045379 299 ALMEA 303 (352)
Q Consensus 299 ~li~a 303 (352)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.80 E-value=4.1 Score=35.38 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=102.4
Q ss_pred HHhcCCHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 73 VQREVDSNTIWDAFDSLPP-----THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
..+.|+.+.|...+.+.+. ++...-.+... .||.-.+.+.+..++++|..++++..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~------------------~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARV------------------CYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHH------------------HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3578999999999887752 22222111111 556656666555588888777776543
Q ss_pred C--------CCCCCH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 148 S--------RCIPTE-----DTYALLLKAYCMSGLLE---KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 148 ~--------~~~p~~-----~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
. ...|+. .++..++.++...+..+ .|..+++.+... .+-...++-.-++.+.+.++.+.+.++
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHH
Confidence 2 223443 35667777887777655 455566666444 222346666777777778999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGKA--SKSFMALKLFNEMRSHKCKPNIC 260 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~l~~~m~~~g~~p~~~ 260 (352)
+.+|...- ......+..++..+... .....|...++.+....+.|...
T Consensus 144 L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 144 LMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 99998762 21345566655555222 23356666676665554555543
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.60 E-value=5.3 Score=35.98 Aligned_cols=146 Identities=16% Similarity=0.039 Sum_probs=93.8
Q ss_pred hcCCHHHHHHHhcCCCCchhhHHHHHHHH-HHHhhccCcchhhHHhH-----------HHHHHHHHHHccCCHHHHHHHH
Q 045379 75 REVDSNTIWDAFDSLPPTHATWDDLINVS-VQLRLNKKWDPIVLMSC-----------VSILLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~l~ 142 (352)
-.|+.+.|.+-|+.|..|+.|--.=+.++ ....+.+..+-...... .+.+++...+..|+|+.|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 46999999999999998888765555543 33333332222221111 8899999999999999999999
Q ss_pred HHHHhCC-CCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHH
Q 045379 143 LELLDSR-CIPTED--TYALLLKAYCM---SGLLEKAEAVFREMRKYGLPPSAVVYN-SYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 143 ~~m~~~~-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m 215 (352)
+.-+... +.++.. .-..|+.+-+. ..+...|...-.+..+ +.|+...-. .-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 9887543 445544 33444443322 2345555555444433 345433322 3456788899999999999998
Q ss_pred HHcCCCC
Q 045379 216 KRDCCQP 222 (352)
Q Consensus 216 ~~~~~~~ 222 (352)
-+..-.|
T Consensus 290 WK~ePHP 296 (531)
T COG3898 290 WKAEPHP 296 (531)
T ss_pred HhcCCCh
Confidence 8874333
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=2.7 Score=36.94 Aligned_cols=152 Identities=14% Similarity=0.049 Sum_probs=108.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY---GLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
-.|.+.+|-..|+++.+. .+.|..++.-.=++|...|+.+.-...+++.... ++|....+-....-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457888888889988875 4457888888999999999999988888887654 343334444455556678899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN---ICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
|++.-++-.+.+ +.|.-+-.+....+-..|+..++.+...+-.+.--.-+ ..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998888764 34666777788888888999999887766543210111 11233344455667999999999975
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.46 E-value=1.3 Score=33.98 Aligned_cols=73 Identities=23% Similarity=0.103 Sum_probs=47.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 129 YGQKSLHKKAEFTYLELLDSRC--IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
..+.|++++|.+.|+.+..+-. +-....-..++.+|.+.+++++|...+++..+..-.....-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4467888888888888876532 124456777888888888888888888887775432223445555555443
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.36 E-value=2.9 Score=38.84 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDC-CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI--CTYTALV 266 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~li 266 (352)
.+-..+..++.+.|+.++|.+.|++|.+.. ..........|++++...+.+.++..++.+..+... |.. ..|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence 333457777888999999999999997653 222445778899999999999999999999865433 333 3566655
Q ss_pred HHHHhcC
Q 045379 267 NAFAREG 273 (352)
Q Consensus 267 ~~~~~~g 273 (352)
..+-..+
T Consensus 339 LkaRav~ 345 (539)
T PF04184_consen 339 LKARAVG 345 (539)
T ss_pred HHHHhhc
Confidence 4443333
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=2.3 Score=38.28 Aligned_cols=105 Identities=17% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHc-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 045379 198 GLLKGGNPQKAVEIFQRMKRD-----CC---------QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 263 (352)
.|.+.|++..|..-|++.... +. ..-..++++|.-+|.+.+++.+|++.-......+ ++|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 455666666666665553221 11 1124578899999999999999999999998775 56777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 264 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
.--.+|...|+++.|...|+++++. .|+-...+.=+..|.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 8889999999999999999999875 777776666665554
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.14 E-value=6.4 Score=35.58 Aligned_cols=184 Identities=15% Similarity=0.007 Sum_probs=114.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSR---CIPTEDTYALLLKAYCM---SGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
..++-+|....+++...++.+.+...- +.-+...--...-++.+ .|+.++|+.++..+....-.++..+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445999999999999999998641 11122222233445556 899999999999976666678888888877
Q ss_pred HHHHc---------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH---HH-HHhCCC---C
Q 045379 197 DGLLK---------GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK-S---FMALKLF---NE-MRSHKC---K 256 (352)
Q Consensus 197 ~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~---~~a~~l~---~~-m~~~g~---~ 256 (352)
..|-. ...+++|...|.+--+. .||..+=-++.......|. . .+..++- .. +.+.|. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 76643 22367777777765543 2444322222222223332 1 2223332 12 223332 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q 045379 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM 310 (352)
Q Consensus 257 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m 310 (352)
.+---+.+++.++.-.|+.++|.+..++|.+.. .|..+ ..+.++-+.+++..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~-l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE-LESTLENIKLIRHF 354 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh-HHHHHHHHHHHHHH
Confidence 344567889999999999999999999999762 44433 55666666666666
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=5.2 Score=39.51 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=92.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
....+.+.+.|++++|..-|-+-... +.|+ .+|.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHh
Confidence 33446677889999998888766542 2232 244555555666667777788888886 4557778889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
++.++-.++.+.-. .|.- ..-....+..+.+.+-.++|..+-..... +......++ -..|++++|++.+
T Consensus 445 kd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi 513 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYI 513 (933)
T ss_pred cchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHH
Confidence 98888777766554 2221 11234556666777777777766655432 233333333 3457788888777
Q ss_pred HHH
Q 045379 283 EQL 285 (352)
Q Consensus 283 ~~m 285 (352)
..+
T Consensus 514 ~sl 516 (933)
T KOG2114|consen 514 SSL 516 (933)
T ss_pred hcC
Confidence 766
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=1.6 Score=37.63 Aligned_cols=78 Identities=10% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-----HKCKPNICTYTA 264 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~t~~~ 264 (352)
.++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..++.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567778888889999999999999998864 55888999999999999999999999988754 688888887776
Q ss_pred HHHH
Q 045379 265 LVNA 268 (352)
Q Consensus 265 li~~ 268 (352)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.05 E-value=9.3 Score=37.16 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=129.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHh----HHHHHHHHHHHccCCHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMS----CVSILLIEAYGQKSLHKKAEF 140 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~ 140 (352)
..+.+...++..-.|++|.+.+...... ...+.++......+..+...... ...-.+.+++.+.|.-++|.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~----e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT----ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch----HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 6688999999999999999999876421 12334444444444433333222 255667788888999998888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHcCCCHHHHH
Q 045379 141 TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-----------PSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 141 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
.|-+.-. |. ..+.+|...++|.+|.++-+..+-..+. .+.. .-.-|..+.+.|+.=+|-
T Consensus 874 a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daa 943 (1189)
T KOG2041|consen 874 AYLRRSL----PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAA 943 (1189)
T ss_pred HHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHH
Confidence 7754432 22 3456777788888887776553221110 0001 122455678888877777
Q ss_pred HHHHHHHH----cCCCCCHH----HHHH-HHHHH----------HhcCCHHHHHHHHHHHHhC-------CCCCCHHHHH
Q 045379 210 EIFQRMKR----DCCQPSTE----TYTL-MINLY----------GKASKSFMALKLFNEMRSH-------KCKPNICTYT 263 (352)
Q Consensus 210 ~~~~~m~~----~~~~~~~~----~~~~-li~~~----------~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~ 263 (352)
+++.+|-+ ++++|-.. +..+ |+.-+ -.+|..++|..+++.-... +.-.....|.
T Consensus 944 rll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyH 1023 (1189)
T KOG2041|consen 944 RLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYH 1023 (1189)
T ss_pred HHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHH
Confidence 77777754 34433221 1111 12222 1346666777655543211 0111233455
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 045379 264 ALVNA--FAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALME 302 (352)
Q Consensus 264 ~li~~--~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~ 302 (352)
.+|.+ -...|.++.|++.--.+.+. .+-|..+.|+.+.-
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllAL 1065 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLAL 1065 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHH
Confidence 55544 44578899998887777654 56777788876653
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.92 E-value=2.1 Score=34.42 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS--TETYTLMINLYGKASKSFMALKLFNEMRSH---KCKPNICTYTA 264 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~t~~~ 264 (352)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677788888888888888888888887654433 234566778888888888888777766442 22222221111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 045379 265 LVN--AFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 265 li~--~~~~~g~~~~a~~l~~~m~ 286 (352)
+.. ++...+++.+|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2345789999999888764
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.5 Score=39.92 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAY----CMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
....-|+...+...++-|..+-+.- + .+..+...++..| .+.|++++|..-|-+-... +.| ..+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 3344555555565666555443321 1 2344444444433 3456666665555443332 111 1234
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.-|....++..-..+++.+.+.|+. +..--+.|+++|.+.++.++-.+..+..
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 4444455555555566666665543 3344455666666666665555544443
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.69 E-value=3.4 Score=31.15 Aligned_cols=92 Identities=13% Similarity=-0.055 Sum_probs=66.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHcCC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY---IDGLLKGG 203 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g 203 (352)
-+.+..|+.+.|++.|.+...--+ -....||.-..++--+|+.++|++=+++..+..-.-+...+.+. -..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 356778999999999988876432 36778999999999999999998888887764322343333332 33567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 045379 204 NPQKAVEIFQRMKRDC 219 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~ 219 (352)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887776655
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.62 E-value=0.29 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.005 Sum_probs=14.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLEL 145 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m 145 (352)
|+.|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.22 E-value=0.66 Score=27.39 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR 149 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 149 (352)
+|..+...|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555666666666666666666666543
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.17 E-value=9.5 Score=35.14 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=28.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 311 HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 311 ~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
-..+.|+..+|.-+.-.+....+++||+++|.
T Consensus 488 L~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 488 LTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45678999999999999999999999999997
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.16 E-value=8.8 Score=34.74 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=99.0
Q ss_pred chhhHHHHHHHHHHHhhccCcchhhHHhH---------------HHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCC
Q 045379 92 THATWDDLINVSVQLRLNKKWDPIVLMSC---------------VSILLIEAYGQ---KSLHKKAEFTYLELLDSRCIPT 153 (352)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~ 153 (352)
...+-.++++.+...++...++.++...+ +---..-++.+ .|+.++|++++..+......++
T Consensus 137 ~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 137 ELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred hhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 34455566666666666666666655544 11123344556 8999999999999776667788
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH----HHHHHHH---HH-HH
Q 045379 154 EDTYALLLKAYCMS---------GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP----QKAVEIF---QR-MK 216 (352)
Q Consensus 154 ~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~---~~-m~ 216 (352)
+.+|..+...|-+. ...++|...|.+--+. .|+..+--.++..+...|.. .+..++- .. +.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 99999888877431 2366777777665443 24433322233333333331 2233333 11 22
Q ss_pred HcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 217 RDCC---QPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 217 ~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
++|. ..+-..+..++.++.-.|+.++|.+..++|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3332 235566788999999999999999999999876
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.87 E-value=4.3 Score=30.58 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCC
Q 045379 163 AYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT---LMINLYGKASK 239 (352)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~ 239 (352)
+.+..|+.+.|++.|.+...- .+-....||.-..++.-+|+.++|..-+++..+..-.-+..... .--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677888888887776654 34456777877778877888888777777766532122222222 22344566677
Q ss_pred HHHHHHHHHHHHhCC
Q 045379 240 SFMALKLFNEMRSHK 254 (352)
Q Consensus 240 ~~~a~~l~~~m~~~g 254 (352)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=8.1 Score=33.47 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=62.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 128 AYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
.....|++.+|..+|+........ +...-..+..++...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566677777766666654322 3445555666666677777777776665433221122222223333444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
...+-.+.-.. +-|...--.+...+...|+.++|.+.+-.+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444332 2244445555566666666666665555544
No 254
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.71 E-value=8.7 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+..+..+|-.+.+.++-.++... +..+...+..-+-+...+.-|-++|..|-+
T Consensus 722 Ai~i~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 722 AIEICGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred hhhhhhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 344456666667777666665543 444555555555566667778888887743
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=2.6 Score=36.70 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 045379 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY---GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST 224 (352)
Q Consensus 148 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 224 (352)
.|.+.+..+...++..-....+++.++..+-.++.. ...|+. +-.+.++.+. .-++++++.++..-.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 344444555555555555556666666665555543 112221 1112222222 23555666666666666666777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+++.+|..+.+.+++.+|..+...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777776666666655543
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.57 E-value=5.1 Score=34.19 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 230 MINLYGKASKSFMALKLFNEMRSH-KCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
|..++...|++++|..+|..+.+. +-.|. +..+--|.....+.|+.++|..+|.++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444445555555555555444332 11111 13344444444445555555555555443
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.55 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888887743
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.38 E-value=4.2 Score=30.73 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
....++....+|+-|+-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444444444331 12333444444444444444444444444444443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.24 E-value=13 Score=34.77 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 045379 228 TLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI-EPDVYAYNALM 301 (352)
Q Consensus 228 ~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~~~~~li 301 (352)
..+..++.+.|+.++|++.|++|.+.. ..-+......|+.++...+.+.++..++.+..+... +.-...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 456777789999999999999998653 112344788999999999999999999999754332 22335566544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.21 E-value=1 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.12 E-value=8.6 Score=32.57 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=107.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcC--
Q 045379 128 AYGQKSLHKKAEFTYLELLDSRC--IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKG-- 202 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~-- 202 (352)
.-.+.|++++|.+.|+.+..+.+ +-...+...++.++-+.+++++|....++..+. +-.|| .-|..-|.+.+.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcc
Confidence 34578999999999999986542 235668888889999999999999999998765 33333 4455555555432
Q ss_pred -----CC---HHHHHHHHHHHHHc----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 045379 203 -----GN---PQKAVEIFQRMKRD----CCQPSTETY------------TLMINLYGKASKSFMALKLFNEMRSHKCKPN 258 (352)
Q Consensus 203 -----g~---~~~a~~~~~~m~~~----~~~~~~~~~------------~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 258 (352)
.+ ...|..-|+++.++ .-.||...- -.+..-|.+.|.+..|..-+++|.+. .+-+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t 200 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDT 200 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccc
Confidence 22 23455555555554 112232221 23557788899999999999999875 2222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 259 ---ICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 259 ---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
...+-.+..+|-+.|-.++|...-.-+..+
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 235677788899999999888877776654
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.23 E-value=6.9 Score=30.00 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=37.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYG--LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
.....+.|++++|.+.|+.+..+- -+-....--.++.+|.+.+++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455677777777777776651 1223344556677777777777777777777765
No 263
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=4.7 Score=38.34 Aligned_cols=98 Identities=21% Similarity=0.157 Sum_probs=44.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 166 MSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALK 245 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (352)
+.|+++.|.++..+. .+..-|..|-++....+++..|.+.|..... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 345555555544432 1224455555555555555555555544331 3334444444444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 246 LFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 246 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
+-....+.|. .|....+|...|+++++++++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444432 22223344445555555555443
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.61 E-value=1.1 Score=25.67 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 259 ICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 259 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..+++.|...|...|++++|..++.+..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888887753
No 265
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.53 E-value=1.4 Score=39.79 Aligned_cols=132 Identities=15% Similarity=0.057 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCC-CCCHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMR----KYGLP-PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR----DCC-QPSTE 225 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~~~~ 225 (352)
.|..|-..|.-.|+++.|....++=. +.|-+ .....+..+-+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666788999988766532 22322 2346678888999999999999999876432 221 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSH-----KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
++-.|-++|.-..++++|+..+.+-... ...-....+-+|-.+|...|..++|+.....-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667888888888899998877653221 1123456788899999999999999888766543
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.28 E-value=9.5 Score=30.22 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 174 EAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 174 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
.+..+.+.+.+++|+...+..+++.+.+.|++... .++...++-+|....-..+-.+.. ....+.++--+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 35556677889999999999999999999986554 455555666666655554433333 234444444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 254 KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 254 g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
=...+..++..+...|++-+|+++.++..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 00147778889999999999999998864
No 267
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=7.1 Score=34.15 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=77.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 045379 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC---CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI 259 (352)
Q Consensus 183 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 259 (352)
.|.+....+...++..-....+++.++..+-+++... ..|+.. -...+.-+ -.=++++++.++..=...|+=||-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 4666677777888877777888999999888876531 112111 11222222 334678999999988899999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+++.+|+.+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998877654
No 268
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.85 E-value=1.2 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.52 E-value=11 Score=30.16 Aligned_cols=167 Identities=16% Similarity=0.055 Sum_probs=111.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS-RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID-G 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~ 198 (352)
.+......+...+.+..+...+...... ........+......+...+....+.+.+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 4566667777788888888887777652 2334555677777777777888888888888776543331 22222222 6
Q ss_pred HHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCC--QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+-..+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 7788888888888888755211 12333444444456677888888888888876531113567777778888888888
Q ss_pred HHHHHHHHHHHC
Q 045379 277 EAEEIFEQLQGA 288 (352)
Q Consensus 277 ~a~~l~~~m~~~ 288 (352)
.|...+......
T Consensus 220 ~a~~~~~~~~~~ 231 (291)
T COG0457 220 EALEYYEKALEL 231 (291)
T ss_pred HHHHHHHHHHhh
Confidence 888888887754
No 270
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.42 E-value=27 Score=34.31 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=63.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh---
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFAR--- 271 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~--- 271 (352)
...+.-.|+++.|.+.+-+.. +...+.+.+-+.+.-| |-+......-..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 344555789999999887711 1122334333333333 32222211112222111 01222567888888887
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------------------HHHH-H-hcCCCC-CHHH---HHH
Q 045379 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------------------LISR-M-HMGCEP-DRAS---YNI 323 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------------------~~~~-m-~~~~~p-~~~~---~~~ 323 (352)
..+..+|++++--+....-......+...+.-+. ++++ . --++.. .... ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 4578888888887765433222333333333222 2222 1 111222 2222 333
Q ss_pred HHHHHHHcCCcchhHHHHHH
Q 045379 324 MVDAYGRAGLHEGKCSYSLV 343 (352)
Q Consensus 324 li~a~~~~g~~~~A~~~~~~ 343 (352)
...-+...|++++|..+|.+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45568889999999999863
No 271
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=8.9 Score=36.60 Aligned_cols=81 Identities=20% Similarity=0.101 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
+..-|..|-++..+.|++..|.+.|.... -|..|+-.+...|+-+....+-..-.+.|. .|....
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 33445555555555555555555554432 233344444444544433333333333331 222333
Q ss_pred HHHhcCCHHHHHHHHH
Q 045379 233 LYGKASKSFMALKLFN 248 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~ 248 (352)
+|...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444555555555443
No 272
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.32 E-value=4.2 Score=28.74 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=15.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+....+.|++....+.+.+|.+.+++..|.++|+-.
T Consensus 32 ~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 32 NLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333444444444444444444444444444433
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.19 E-value=21 Score=32.95 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 318 RASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 318 ~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+|..++....+.++.++|..++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567888888888888888888775
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.11 E-value=5 Score=28.37 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (352)
.=++.+-++.+....+.|++......+++|-+.+++..|..+++-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33555566666666666777777777777777777777777776655
No 275
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.96 E-value=11 Score=29.13 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRC-----IPTEDTYALLLKAYCMSGL-LEKAEAVFREMRKYGLPPSAVVYNS 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ 194 (352)
..|.++.-...-+.+...+.+++.+..-.. ..+..+|++++.+.++..- ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445555555555555555555555521100 1233344555555443333 2234444555554444555555555
Q ss_pred HHHHHHc
Q 045379 195 YIDGLLK 201 (352)
Q Consensus 195 li~~~~~ 201 (352)
+|.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 5554443
No 276
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.86 E-value=9.3 Score=31.64 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA--GIEPDVYAYNALMEA 303 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~~~~~li~a 303 (352)
|.+..++.+.+.+.+.+|+...++-.+.. +-|..+-..++..+|-.|+|++|..-++-.-.. ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566777778888888888887766652 334455667788888888888888777766543 455667888888877
Q ss_pred HHHHHHH
Q 045379 304 YRLISRM 310 (352)
Q Consensus 304 ~~~~~~m 310 (352)
-..-+..
T Consensus 82 ea~R~ev 88 (273)
T COG4455 82 EAARNEV 88 (273)
T ss_pred HHHHHHH
Confidence 6643333
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.37 E-value=13 Score=29.60 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH-
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN-SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE-TYTLMIN- 232 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~- 232 (352)
.|..-+. .++.+..++|+.-|.++.+.|...-...-. -........|+-..|...|++.-...-.|-.. -.--|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 234455666666666666655432211111 11222344566666666666665543333221 1111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 233 -LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 233 -~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+..+|.++......+-+...+-+.-...-..|--+-.+.|++.+|.+.|.++.+.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22345666666555555544432222233344444555666666666666666554
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.06 E-value=8.9 Score=31.30 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH---KCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
+.|.+.|-++...+.--++...-.|...| ...+.+++..++.+..+. +-.+|+..+..|.+.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56666666666665444444444443333 356677777777666542 23566777777777777777777664
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.93 E-value=0.17 Score=38.95 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFN 248 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 248 (352)
.+.+.+.++....+++.+...+...+....+.++..|++.++.++.+++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333444444444444444443333344444555555555544444444443
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.74 E-value=0.2 Score=38.57 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455556666666666655544555666666666666655555555555
No 281
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=25 Score=32.07 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcC
Q 045379 165 CMSGLLEKAEAVFREMRKY---GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE---TYTLMINLYGKAS 238 (352)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g 238 (352)
.+.|.+..|.+.|.+.... ...|+...|-.......+.|+.++|+.--+...+. |.. .+..-..++.-.+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766553 34455566666666666777777777666666543 222 2222334455556
Q ss_pred CHHHHHHHHHHHHhC
Q 045379 239 KSFMALKLFNEMRSH 253 (352)
Q Consensus 239 ~~~~a~~l~~~m~~~ 253 (352)
+|++|.+-|+...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777766666543
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.20 E-value=5.2 Score=28.61 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
+..+-++.+....+.|++......+.+|-+.+++..|..+++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666666554
No 283
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.13 E-value=22 Score=30.86 Aligned_cols=132 Identities=5% Similarity=0.066 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 169 LLEKAEAVFREMRK-YGLPPSAVVYNSYIDGLLKGG--NPQKAVEIFQRMKR-DCCQPSTETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 169 ~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (352)
.+-+|+.+|+...- ..+..|..+...+++...... ....-.++.+-+.. .|-.++..+.-.+|..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555553222 234455566666666555421 22223333333322 234556666666777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 045379 245 KLFNEMRSH-KCKPNICTYTALVNAFAREGLCEEAEEIFEQL-----QGAGIEPDVYAYNAL 300 (352)
Q Consensus 245 ~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m-----~~~~~~p~~~~~~~l 300 (352)
++++..... +..-|...|..+|......|+..-...+..+= .+.++..+...-.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 766665443 44456666777777777777766665555441 233555555444443
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.02 E-value=47 Score=34.63 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCcchhHHHHH
Q 045379 322 NIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 322 ~~li~a~~~~g~~~~A~~~~~ 342 (352)
.-.+..|++.-.|++|.++-.
T Consensus 1030 ~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHhhHhHHHHHHHHHH
Confidence 355667778888899988764
No 285
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.60 E-value=29 Score=31.75 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=97.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCH-------------HHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKA--YCMSGLLEKAEAVFREMRKYGLPPSA-------------VVYN 193 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~-------------~~~~ 193 (352)
+.-.|++++|...-...++... ...+...++. +-..++.+.+...|++....+ |+. ..+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 4445677777666655554321 1123333332 233556677777777665532 221 1222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHH
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKR---DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT---YTALVN 267 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~li~ 267 (352)
.--+-..+.|++.+|.+.|.+-+. .++.|+...|.....+..+.|+..+|+.--++.... |..- |..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 223345678999999999998776 345677788888888999999999999988877653 4332 333334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 045379 268 AFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 268 ~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
++...++|++|.+-+++..+..
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5666889999999999887653
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.30 E-value=16 Score=28.63 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
......++.+++..++.-+.--. -.|...++...+ +...|+|.+|.++|+++.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 33344556666666666655421 112223333333 34566666666666666554
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=25 Score=30.54 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=92.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 241 (352)
......|++.+|..+|+...+.. +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999988763 23356777899999999999999999999865422222222223344445555554
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 045379 242 MALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALMEAYR 305 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~a~~ 305 (352)
+...+-...-. .| |...-..+...+...|+.++|++.+-.+.+. .-.-|...-..+++.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444443 24 6666677788899999999999888777654 22334444455555444
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.93 E-value=28 Score=30.23 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=94.8
Q ss_pred HHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKK---AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~---a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 197 (352)
+...++.+|...+..+. |.++++.+..... -.+..+..-+..+.+.++.+.+.+++.+|...- ..+...+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 78888899988877664 5555556643332 235566666777777999999999999998862 223355555555
Q ss_pred HH---HcCCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HHHH---HHhcCC------HHHHHHHHHHHHh-CCCCCCHHHH
Q 045379 198 GL---LKGGNPQKAVEIFQRMKRDCCQPSTE-TYTL-MINL---YGKASK------SFMALKLFNEMRS-HKCKPNICTY 262 (352)
Q Consensus 198 ~~---~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~-li~~---~~~~g~------~~~a~~l~~~m~~-~g~~p~~~t~ 262 (352)
.+ ... ....|...+..+....+.|... .... ++.. ..+.++ .+...++++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 55 333 3456667777666555555553 1111 1111 112111 4445555554333 2334444433
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHHH
Q 045379 263 TAL-------VNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 263 ~~l-------i~~~~~~g~~~~a~~l~~~m~ 286 (352)
.++ ...+.+++++++|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 233557899999999998543
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.83 E-value=22 Score=29.04 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 169 LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR---DCCQPSTETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 169 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (352)
.-+.|...|-++...+.--++...-.|...|. ..+.+++.+++.+..+ .+-.+|+..+..|.+.|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777777777766666666666666555 4577788888777655 233567888888888888888887764
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.54 E-value=21 Score=28.52 Aligned_cols=136 Identities=13% Similarity=0.011 Sum_probs=95.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH-
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV-VYNSYID- 197 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~- 197 (352)
.|..-++ ..+.+..++|+.-|..+.+.|..--+. ...-......+.|+...|...|++.-...-.|-.. -..-|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444444 456788899999999999877653332 22333445677899999999999987765444332 2222222
Q ss_pred -HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045379 198 -GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP 257 (352)
Q Consensus 198 -~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 257 (352)
.+...|.++....-.+.+-..+-+.-...-..|--+-.+.|++..|.+.|..+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 345678999999988888777655556666778888889999999999999987643334
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.38 E-value=21 Score=28.48 Aligned_cols=165 Identities=19% Similarity=0.044 Sum_probs=117.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLK-AYCMSGLLEKAEAVFREMRKYGL--PPSAVVYNSYID 197 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~ 197 (352)
.+......+...+.+..+.+.+.........+. ........ .+...|+++.+...+.+...... ......+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 455566667777788999999998887554431 22222223 78899999999999999855221 123444455555
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 045379 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGLCE 276 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 276 (352)
.+...++.+.+...+.+..+.........+..+-..+...++++.|...+...... .|+ ...+..+...+...+..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHH
Confidence 57788999999999999887632214677888888999999999999999988765 333 445555555555777899
Q ss_pred HHHHHHHHHHHC
Q 045379 277 EAEEIFEQLQGA 288 (352)
Q Consensus 277 ~a~~l~~~m~~~ 288 (352)
.+...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 999888888765
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.30 E-value=33 Score=30.58 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 317 DRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 317 ~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
...++..+...+.++|+++.|...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~ 170 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALN 170 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 34455555555666666665555543
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.97 E-value=4.6 Score=21.84 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777778888888888888877764
No 294
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.91 E-value=22 Score=30.64 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
...=|.+++..++|.+++...-+--+.--+..+...-..|-.|.+.+.+..+.++-..=.+.--.-....|.+++..|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34457889999999999887766654333344556666677788999999888887665543222334457777776665
Q ss_pred -----CCCHHHHHHHH
Q 045379 202 -----GGNPQKAVEIF 212 (352)
Q Consensus 202 -----~g~~~~a~~~~ 212 (352)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 69999999887
No 295
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.35 E-value=21 Score=27.57 Aligned_cols=92 Identities=7% Similarity=0.096 Sum_probs=49.4
Q ss_pred HhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 045379 146 LDSRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYG-----LPPSAVVYNSYIDGLLKGGN-PQKAVEIFQRMKR 217 (352)
Q Consensus 146 ~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 217 (352)
.+.+..++.. ..++++.-....+.+.....+++.+..-. -..+..+|+.++++.+.... --.+..+|..|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3344444443 45666666666667777766666663210 01233456666666544444 3345555666665
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 045379 218 DCCQPSTETYTLMINLYGKA 237 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~ 237 (352)
.+.+++..-|..+|.++.+-
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 55556666666666655543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.26 E-value=5.1 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREM 180 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m 180 (352)
|..+..++...|++++|+..|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 333444444444444444444443
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.51 E-value=3.1 Score=21.24 Aligned_cols=24 Identities=8% Similarity=0.035 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcC
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDS 88 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~ 88 (352)
....+...+...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456788899999999999998863
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.36 E-value=3.1 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 045379 223 STETYTLMINLYGKASKSFMA 243 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a 243 (352)
+..+|+.+-..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444444
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.23 E-value=42 Score=30.43 Aligned_cols=168 Identities=11% Similarity=-0.034 Sum_probs=96.1
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHH-HHHHHHHH------HhhccCcchhhH---HhHHHHHHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWD-DLINVSVQ------LRLNKKWDPIVL---MSCVSILLIEA 128 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~l~~~~~~------~~~~~~~~~~~~---~~~~~~~li~~ 128 (352)
+|-..++.-.+...+..+|+.+.|-+++++.. .++. ++...+.. .|....--...+ .+.+.-.-|..
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL---f~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL---FAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 44455566677777778888887776666542 1111 11111110 000000000000 11144556778
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHc
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC-MSGLLEKAEAVFREMRKY------GLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~ 201 (352)
+.+.|.+..|+++-+-+..-+..-|+.....+|+.|+ +.++++-.+++.+..... ..-|+ ..|+..+..+..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA~~~l 191 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALAYFRL 191 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHHHHHh
Confidence 8999999999999999998777667887888888765 577888888888776552 12343 566655554443
Q ss_pred CCC--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 202 GGN--------------PQKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 202 ~g~--------------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
.+. .+.|...+.+.... -+.+...|+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l 234 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL 234 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh
Confidence 332 26676666665543 234444454444
No 300
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.14 E-value=8.4 Score=37.34 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..-+..+..+++.. ....+.+..+-+..+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 4554444444444322 44555555444446777778888889999988888888887755422 1245666666677
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH-KCKPNIC---TYTALVNAFAREGLCE 276 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~---t~~~li~~~~~~g~~~ 276 (352)
++|+...+..+-+.+.+ .|+..|... ..++.+.+... .+.+... +|.-.-.. .+.|++.
T Consensus 450 ra~d~~~v~~i~~~ll~---------------~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~-~~~~~~~ 512 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE---------------EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYEL-YDEGDFR 512 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHH---------------HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHH-HhhhhHH
Confidence 77776665555544443 222222211 11111111110 0111111 11111111 2458888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q 045379 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISR 309 (352)
Q Consensus 277 ~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~ 309 (352)
+|.+.+-.+.+.+..|...-...|.++.-+++.
T Consensus 513 ~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lplL~~ 545 (566)
T PF07575_consen 513 EAASLLVSLLKSPIAPKSFWPLLLCDALPLLES 545 (566)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHHHhCC
Confidence 998888888888888887777777777665544
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.05 E-value=1.8 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcchhHH
Q 045379 315 EPDRASYNIMVDAYGRAGLHEGKCS 339 (352)
Q Consensus 315 ~p~~~~~~~li~a~~~~g~~~~A~~ 339 (352)
+-|...|..+...|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4589999999999999999999963
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.67 E-value=37 Score=29.46 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=101.5
Q ss_pred ccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 131 QKSLHKKAEFTYLELLD-SRCIPTEDTYALLLKAYCMS--GLLEKAEAVFREMRK-YGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
+...+.+|+++|+...- ..+--|......+++..... .....-.++.+.+.. .|-.++..+...+|..+++.++|.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456778888874432 34556888888888877762 234444555555553 356788889999999999999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHHh
Q 045379 207 KAVEIFQRMKRD-CCQPSTETYTLMINLYGKASKSFMALKLFNE-----MRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 207 ~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~-----m~~~g~~p~~~t~~~li~~~~~ 271 (352)
+-.++++.-... +..-|...|..+|..-...|+..-..++.++ +...++..+...-..+-..+.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999887665 5566888999999999999999888888775 3455677666665555555443
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.97 E-value=20 Score=25.78 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 045379 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALMEAYR 305 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~a~~ 305 (352)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+ |..- ..|..+++-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHHHHh
Confidence 44444555555556666666666666666666666666666666543 2221 15555554443
No 304
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.86 E-value=31 Score=29.78 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
...=|.+++..++|.++....-+--+. .++| .+....|-.|.+.+.+..+.++-..-.+..-.-+...|..+...|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 334478899999999998765444332 3444 566777778999999999999988777643333445577766666
Q ss_pred H-----hcCCHHHHHHHH
Q 045379 235 G-----KASKSFMALKLF 247 (352)
Q Consensus 235 ~-----~~g~~~~a~~l~ 247 (352)
. -.|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 5 469999999887
No 305
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.07 E-value=47 Score=29.62 Aligned_cols=120 Identities=10% Similarity=0.003 Sum_probs=89.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHH
Q 045379 165 CMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD---CCQPSTETYTLMINLYGKASKSF 241 (352)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~ 241 (352)
...|...+|-..++++.+. .|.|...++-.=.+|.-.|+.+.....+++..-. +++-....-.+..-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567888888888888775 6778888888888999999999888888887654 22222333344555666889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|++.-++..+.+ +.|.-.-.++...+--.|++.++.+...+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999998877654 4566667777888888999999988876543
No 306
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=78.95 E-value=40 Score=28.72 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCH--HH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG--LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPST--ET 226 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~--~~ 226 (352)
|-...|+.-+. -.+.|++++|.+.|+.+..+. -+-...+.-.++-++-+.+++++|...+++.... +-.||. ..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33344444444 456799999999999998752 2334556667778889999999999999998764 333333 33
Q ss_pred HHHHHHHHHhc----CCH---HHHHHHHHHHHhC----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHH
Q 045379 227 YTLMINLYGKA----SKS---FMALKLFNEMRSH----KCKPNICTY------------TALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 227 ~~~li~~~~~~----g~~---~~a~~l~~~m~~~----g~~p~~~t~------------~~li~~~~~~g~~~~a~~l~~ 283 (352)
|-..++-+... .+. .+|..-|+++... ...||...- -.+.+.|.+.|.+..|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 43333333322 233 3445555555443 223444321 234567888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHH
Q 045379 284 QLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 284 ~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
+|.+. ..-+.. .....-.+..+|...|..++|.+.-
T Consensus 192 ~v~e~-y~~t~~---------------------~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 192 EVLEN-YPDTSA---------------------VREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHhc-cccccc---------------------hHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99876 222222 2333446666777777777776654
No 307
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.80 E-value=23 Score=25.81 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=21.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
-|..|+.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887776
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.33 E-value=81 Score=31.93 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=90.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHcCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 045379 164 YCMSGLLEKAEAVFREMRKYGLPPSA-------VVYNSYID-GLLKGGNPQKAVEIFQRMKRD----CCQPSTETYTLMI 231 (352)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li 231 (352)
.....++++|..+..++...-..|+. ..++.+-. .....|++++|+++-+...+. -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567788888887777654222221 12332222 223457777777776655442 2234556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHH--HHHHhcCCH--HHHHHHHHHHHHC--CCC----CCHHHHH
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNIC---TYTALV--NAFAREGLC--EEAEEIFEQLQGA--GIE----PDVYAYN 298 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~li--~~~~~~g~~--~~a~~l~~~m~~~--~~~----p~~~~~~ 298 (352)
.+..-.|++++|..+..+..+.--.-+.. .|..+. ..+..+|+. ++.+..|+..... +-+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888888888887776654432122332 223322 234556633 3333334333322 111 1223333
Q ss_pred HHHHHHHHHHHH----hc------CCCCC--HH--HHHHHHHHHHHcCCcchhHHHHH
Q 045379 299 ALMEAYRLISRM----HM------GCEPD--RA--SYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 299 ~li~a~~~~~~m----~~------~~~p~--~~--~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+..++.-++.- .. ...|. .. .+..|.......|+.++|...+.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333333311110 00 11121 12 22367888999999999988765
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.14 E-value=40 Score=28.38 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=20.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNIC 260 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 260 (352)
.--+..+++.+|+++|+++....+.-+..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 33456688899999999987765544443
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.03 E-value=8.3 Score=20.58 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777778888888888777664
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.99 E-value=6.3 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=19.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777777654
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.76 E-value=65 Score=30.52 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=113.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
..-+++..++.+..+.-+..+-.+|.+.| -+-..|..++.+|... ..++-..+|+++.+..+ +.....--+.-+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 45678888888888888888999998866 5778899999999888 77888889998888765 3344444444444
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQ-----PSTETYTLMINLYGKASKSFMALKLFNEMRS-HKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~ 274 (352)
..++.+.+..+|.+...+=++ .-...|.-|+..- -.+.+....+...+.. .|...-.+.+.-+-..|....+
T Consensus 143 Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 143 EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 448888888888887654221 1123455554322 2355666666666643 4555566677777888889999
Q ss_pred HHHHHHHHHHHHHC
Q 045379 275 CEEAEEIFEQLQGA 288 (352)
Q Consensus 275 ~~~a~~l~~~m~~~ 288 (352)
+.+|.++++.+.+.
T Consensus 221 ~~eai~Ilk~il~~ 234 (711)
T COG1747 221 WTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999977654
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.28 E-value=8.8 Score=20.49 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=5.2
Q ss_pred HHcCCCHHHHHHHHH
Q 045379 199 LLKGGNPQKAVEIFQ 213 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~ 213 (352)
|...|++++|.+.|+
T Consensus 11 ~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHTT-HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 333333333333333
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.94 E-value=34 Score=26.87 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL-MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
.-.+.++.+++..++.-+.-. .|....... -.-.+...|+|.+|+.+|+++.+.. |....-..|+..|..
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 345567888888888887664 444333222 2234567888888888888876652 343334444444443
No 315
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.47 E-value=59 Score=29.36 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=69.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSR-----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK----YGLPPSAVVYN 193 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~ 193 (352)
-++-.++.-.+.++++++.|+...+.- .......|..+-+.|.+..++++|.-+.....+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345566666677777777776665421 112334677777777777777777655544322 22222112222
Q ss_pred -----HHHHHHHcCCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 194 -----SYIDGLLKGGNPQKAVEIFQRMKR----DCCQP-STETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 194 -----~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+.-++...|.+.+|.+.-++..+ .|-.+ -......+...|...|+.+.|+.-+++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222345566776666666665432 23111 2334455667777777777776666553
No 316
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.46 E-value=23 Score=24.60 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 208 (352)
+.++++.+.+.|+ .+......+..+-...|+.+.|.++++.+. +|- ..|...+.++...|+-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3445555555553 233333333333334455566666665555 432 3455555555555554443
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.78 E-value=20 Score=29.74 Aligned_cols=77 Identities=17% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD--CCQPSTETYTLMINL 233 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~ 233 (352)
|.+..++.+.+.+..++++....+-.+.. +.+..+-..++..|+-.|+|++|..-++-.-+. ...+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566777788888999988887766653 445666778888999999999998877765543 123345567666653
No 318
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.43 E-value=39 Score=29.60 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHH
Q 045379 226 TYTLMINLYGKASKSF 241 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~ 241 (352)
+|.-|+.+++.+|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4555555555555544
No 319
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.31 E-value=14 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=13.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 166 MSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444333
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.31 E-value=27 Score=24.99 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
++.+.+.|++++|..+.+.+ ..||...|..|-.. +.|..++...-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34455556666665555544 24555555554433 4555555555555554443
No 321
>PRK11906 transcriptional regulator; Provisional
Probab=74.83 E-value=74 Score=29.72 Aligned_cols=145 Identities=11% Similarity=0.018 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 134 LHKKAEFTYLELL-DSRCIPT-EDTYALLLKAYCMS---------GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 134 ~~~~a~~l~~~m~-~~~~~p~-~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
..+.|+.+|.+.. .+.+.|+ ...|..+..++... ....+|.++-+...+.+ +.|......+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888888887 2234455 33555554444332 12345566666666654 34666666666666777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI---CTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a 278 (352)
++++.|...|++.... .|| ..+|-..--.+.-.|+.++|.+.+++..+. .|.. ......+..|+.. .++.|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 8899999999998876 344 445555555566789999999999986554 3433 3344445566655 45666
Q ss_pred HHHHHH
Q 045379 279 EEIFEQ 284 (352)
Q Consensus 279 ~~l~~~ 284 (352)
..+|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666644
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.82 E-value=7.2 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=8.9
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~ 216 (352)
.+|...|+.+.|..+++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.22 E-value=8.7 Score=22.77 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045379 265 LVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 265 li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.99 E-value=39 Score=26.18 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 166 MSGLLEKAEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
..++++++..+++-|.--- -.+...++...+ +...|+|++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 3556666666665554321 112233333333 34556666666666666554
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.43 E-value=62 Score=28.25 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
+++..-..|..+|.+.+|.++-+...... +.+...+..++..+...|+--.|..-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444455555566666655555554432 344555555555555555544444444443
No 326
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.42 E-value=17 Score=21.95 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 302 (352)
.+.|-+.++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777766666666554
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.87 E-value=1.2e+02 Score=31.15 Aligned_cols=185 Identities=18% Similarity=0.140 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHH---
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR---CIPTEDTYALLLKAYCMSGLL--EKAEAVFREMRKYGLPPSAVVY--- 192 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~--- 192 (352)
-|..|+.-|...|..++|+++|.+..+.. -.--...+-.+++..-..+.. +..++.-++..+..-.-...++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 89999999999999999999999998632 111122344466666666655 6666666666543211000111
Q ss_pred ---------HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHH--HHH---H
Q 045379 193 ---------NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK--------SFMALKL--FNE---M 250 (352)
Q Consensus 193 ---------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~l--~~~---m 250 (352)
...+-.|......+.+..+++.+....-.++..-.+.++.-|++.=+ .+++.+. -+. +
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 12333567778889999999999887777788888888888875322 2233333 111 1
Q ss_pred Hh--CCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHH
Q 045379 251 RS--HKCKPNI--------CTYTALVNAFAREGLCEEAEEIFEQLQGA-------------GIEPDVYAYNALMEAYR 305 (352)
Q Consensus 251 ~~--~g~~p~~--------~t~~~li~~~~~~g~~~~a~~l~~~m~~~-------------~~~p~~~~~~~li~a~~ 305 (352)
.+ ....|.. .-|.-..--+.+.|+.++|+.++-..... ...++...|..++..|.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYL 743 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHh
Confidence 11 1222222 22322222334889999999998776541 12336666666665554
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.56 E-value=13 Score=19.91 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777776653
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.12 E-value=34 Score=24.57 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=26.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
....++|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666666555443 3455555555443 34455555555555555444
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.10 E-value=7.6 Score=20.54 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045379 265 LVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 265 li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44455556666666666666654
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.78 E-value=20 Score=33.05 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.1
Q ss_pred HHHHH-hcCCCCCH
Q 045379 306 LISRM-HMGCEPDR 318 (352)
Q Consensus 306 ~~~~m-~~~~~p~~ 318 (352)
+.+.+ ..|..++.
T Consensus 217 iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHCCcCcch
Confidence 44444 55555543
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.55 E-value=19 Score=24.47 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPT-ED-TYALLLKAYCMSGLLEKAEAV 176 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~ 176 (352)
.....++|+..|....+.-..|. .. ++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888877776543332 22 666777777778877777665
No 333
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=70.44 E-value=87 Score=28.65 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
.|++++|.+-|+.|.+. |... -+..|.-..-+.|+.+.|...-+..-... +.-...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777652 2222 23344444455666666666655544331 122356677778888888888888
Q ss_pred HHHHHHHHcC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 045379 210 EIFQRMKRDC-CQPSTE--TYTLMINLYGK---ASKSFMALKLFNEMRSHKCKPNICTYT-ALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 210 ~~~~~m~~~~-~~~~~~--~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~l~ 282 (352)
++++.-++.. +.++.. .--.|+.+-.. .-+...|...-.+-.+ +.||...-. .-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8887655432 222221 11122221111 1223334333333322 345544322 2245677777777777777
Q ss_pred HHHHHCCCCCC
Q 045379 283 EQLQGAGIEPD 293 (352)
Q Consensus 283 ~~m~~~~~~p~ 293 (352)
+.+-+....|+
T Consensus 287 E~aWK~ePHP~ 297 (531)
T COG3898 287 ETAWKAEPHPD 297 (531)
T ss_pred HHHHhcCCChH
Confidence 77776643443
No 334
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.11 E-value=4.6 Score=30.44 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
.|.-.+|..+|.+|++.|.+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3455667777777777776665 45555543
No 335
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=69.18 E-value=41 Score=24.34 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH
Q 045379 228 TLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE--GLCEEAEEIFEQLQGAGIEPDVY 295 (352)
Q Consensus 228 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~l~~~m~~~~~~p~~~ 295 (352)
..++..|...|+.++|...+.++... .-.......++..+... ..-+.+..++..+.+.+..+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~ 73 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQ 73 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44555666667777777766665321 11112233333333333 22334556666666665544433
No 336
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.16 E-value=21 Score=33.08 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS-----------GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
=++++|.+..+.+. ....+...+....+. +.+++-.++++.+.+.|- +| ....-|+.|-+
T Consensus 28 vd~~eav~y~k~~p------~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR 98 (480)
T TIGR01503 28 VDLQDAVDYHKSIP------AHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTR 98 (480)
T ss_pred CCHHHHHHHHHhCC------ccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CC--ccceeeecccc
Confidence 36777777776663 333344444433332 347888888888888762 22 44456788999
Q ss_pred CCCHHHHHHHHHHHHHcC------CC---CCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDC------CQ---PSTETYTLMINLY-----GKASKSFMALKLFNEMRSHKCKPN---ICTYTA 264 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~------~~---~~~~~~~~li~~~-----~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~ 264 (352)
.+++++|...+++-.+.| .+ ....+...++... .++|- ..+..+++-+...|+.-. ..+||.
T Consensus 99 ~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl 177 (480)
T TIGR01503 99 QNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI 177 (480)
T ss_pred cccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCC-CcHHHHHHHHHHcCCCccCCCcceecc
Confidence 999999999999887642 22 1233444444433 12333 235666666666654321 223332
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 265 LVNAFAREGL-------CEEAEEIFEQLQGAGIEPDVYAYNALM 301 (352)
Q Consensus 265 li~~~~~~g~-------~~~a~~l~~~m~~~~~~p~~~~~~~li 301 (352)
-|++.=- |+.+.++.....+.|+..|.++|..|.
T Consensus 178 ---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLt 218 (480)
T TIGR01503 178 ---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLT 218 (480)
T ss_pred ---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCC
Confidence 1233223 334444444445667777777776544
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.41 E-value=42 Score=25.22 Aligned_cols=43 Identities=7% Similarity=0.103 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 209 VEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 209 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
.+.++.+....+.|+......-+.+|.+.+++..|.++|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555554
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.15 E-value=47 Score=24.95 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (352)
+..+-++.+...++.|++...-.-+++|-+.+++..|..+|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566667777778888888888888888888888888888877654
No 339
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.76 E-value=70 Score=28.46 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE---TYTLMINLYGKASKSFMALKLFNEMRSHKC 255 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 255 (352)
..|.-+..+.|+..+|.+.|+++.+. .|-.. ....||.++....-+.+...++-+..+...
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34555556789999999999887664 23222 335688888888777777777777665543
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.54 E-value=90 Score=27.72 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP---STETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..++..+.+.+.+.|+++.|...+.++.+.+..+ +....-.-.......|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666677777777777776666533111 223333344455556666666666665544
No 341
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.32 E-value=17 Score=31.69 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRSHKCK 256 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 256 (352)
||..|....+.||+++|+++++|.+..|.+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 342
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.75 E-value=69 Score=26.09 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 228 TLMINLYGKASKSFMALKLFNEMRSHKC--------------KPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 228 ~~li~~~~~~g~~~~a~~l~~~m~~~g~--------------~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
-+++..|.+..+|.++.++++.|.+..+ .+--..-|.....|.+.|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3567788899999999999999876432 23344678888999999999999999884
No 343
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.75 E-value=42 Score=25.89 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 045379 178 REMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE 225 (352)
Q Consensus 178 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 225 (352)
+.+++.|+++| ..-..++..+...+..-.|..+++++.+.+...+..
T Consensus 10 ~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 10 ERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 33444454444 222334444444444455555555555544433333
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.49 E-value=47 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
|..++.-|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666667777777777666655
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.37 E-value=91 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
+++.....|..+|.+.+|.++.+...... ..+...+..++..+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la 324 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLA 324 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 45566677888888888888888877543 345555666665555
No 346
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.73 E-value=1.1e+02 Score=27.83 Aligned_cols=166 Identities=13% Similarity=-0.014 Sum_probs=106.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD-SRCIP---TEDTYALLLKAYCMSGLLEKAEAVFREMRKYG-----LPPSAVV 191 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~ 191 (352)
+|-.+..++-+..++.+++.+-..-.. .|..| --....++-.+....+.++++++-|+...+.. -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 777778888777777777777665553 23333 11234456677777888999999988876531 1234567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-C
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKR----DCCQPSTETY-----TLMINLYGKASKSFMALKLFNEMRS----HKCK-P 257 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~----~g~~-p 257 (352)
|-.|-..|.+..++++|.-+..+..+ .++..=...| -.|.-++...|.+-.|.+.-++..+ .|-. .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88888999999999988766654332 2222111122 2345567777888777777776543 3311 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 258 NICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 258 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
.......+.+.|-..|+.|.|+.-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23345566677888999999888887653
No 347
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.54 E-value=45 Score=26.98 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 186 PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444
No 348
>PRK11906 transcriptional regulator; Provisional
Probab=63.68 E-value=1.3e+02 Score=28.17 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
.....+|.++-+...+.+. -|+.....+-.+..-.++++.|...|++....+ +....+|-..-....-.|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556677888877777664 478888888888888899999999999988753 22345555555556678999999999
Q ss_pred HHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 212 FQRMKRDCCQPST---ETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 212 ~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
+++-.+. .|.. ......+..|+.++ +++|++++-+-
T Consensus 395 i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 9996654 3433 33344455777655 57777777543
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.47 E-value=40 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
.|+..+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 688888888888888888888888888887664
No 350
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.38 E-value=7.1 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 237 ASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 237 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
.|.-..|..+|..|.+.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35556788899999999988885 77777654
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.12 E-value=1e+02 Score=26.70 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=127.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh---CCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD---SRCI--PTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-----GLPPSAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~ 190 (352)
+.-.+|..+.+.|++++..+.|.+|.. +.+. -+..+.|++++..+...+.+...++|+.-.+. +-..---
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 666778888888899888888888863 2222 35567888888887777887777777654321 1111112
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ----PS-------TETYTLMINLYGKASKSFMALKLFNEMRS-HKCKPN 258 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~ 258 (352)
|-.-|-..|...+.+.+..++++++.+..-. .| ...|..=|..|..+.+-.....++++... ..--|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345666777788888888888888764221 12 23455556677777777777777776543 222355
Q ss_pred HHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHH--hcCCC-------------
Q 045379 259 ICTYTALVNAF-----AREGLCEEAEEIFEQLQGA---GIEPDVYAYNALMEAYRLISRM--HMGCE------------- 315 (352)
Q Consensus 259 ~~t~~~li~~~-----~~~g~~~~a~~l~~~m~~~---~~~p~~~~~~~li~a~~~~~~m--~~~~~------------- 315 (352)
+.... +|+-| .+.|++++|..=|-+.-+. .-.|-..|.-- |.++..| ..++.
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK----YLVLANMLmkS~iNPFDsQEAKPyKNd 301 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK----YLVLANMLMKSGINPFDSQEAKPYKND 301 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH----HHHHHHHHHHcCCCCCcccccCCCCCC
Confidence 54433 34443 4578888876554444322 22444333221 1133333 55443
Q ss_pred CCHHHHHHHHHHHHHcCCcchhHHHH
Q 045379 316 PDRASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 316 p~~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
|.......|+.+|-. +++.+-.+++
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 445667888888865 4455555554
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.11 E-value=95 Score=29.19 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=77.7
Q ss_pred ccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 131 QKSLHKKAE-FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 131 ~~g~~~~a~-~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
..|+.-.|- +++.-++...-.|+.......| ....|+++.+...+....+. +..+..+-..+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 346655554 4555555544446666555544 45679999998888776554 3345578888899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..-+-|....+. +....+......-..|-++++.-.++++..
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 999888877655 333333333333445666777777776644
No 353
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.41 E-value=24 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 263 TALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.74 E-value=60 Score=29.03 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=52.6
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+.|.++|.+++|+..|..-... .| +++++..-..+|.+..++..|+.=-...... -...+.+|++.+.-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 5688999999999999877653 36 8889999999999999888776544443322 12345566655544
Q ss_pred HHHHHHHHH
Q 045379 206 QKAVEIFQR 214 (352)
Q Consensus 206 ~~a~~~~~~ 214 (352)
..++....+
T Consensus 175 R~~Lg~~~E 183 (536)
T KOG4648|consen 175 RESLGNNME 183 (536)
T ss_pred HHHHhhHHH
Confidence 444443333
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.55 E-value=1.6e+02 Score=28.11 Aligned_cols=151 Identities=11% Similarity=0.002 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 266 (352)
.|....-+++..+..+-.++-.+.+..+|.+.|- +...+-.++.+|... ..+.-..+++++.+... |......-+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHH
Confidence 3444555666666666666667777777666542 556666666666666 44556666666655432 222333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHH--------HHHHHHH--hcCCCCCHHHHHHHHHHHHHc
Q 045379 267 NAFAREGLCEEAEEIFEQLQGAGI-----EPDVYAYNALMEA--------YRLISRM--HMGCEPDRASYNIMVDAYGRA 331 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m~~~~~-----~p~~~~~~~li~a--------~~~~~~m--~~~~~p~~~~~~~li~a~~~~ 331 (352)
..+...++.+.+...|.+....=+ ..-...|.-++.- +.+...+ ..|...-...+.-+-.-|...
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 333333666666666666543211 1112334444431 1233333 344455566666777778888
Q ss_pred CCcchhHHHHH
Q 045379 332 GLHEGKCSYSL 342 (352)
Q Consensus 332 g~~~~A~~~~~ 342 (352)
.++++|++++.
T Consensus 219 eN~~eai~Ilk 229 (711)
T COG1747 219 ENWTEAIRILK 229 (711)
T ss_pred cCHHHHHHHHH
Confidence 88888888875
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.22 E-value=2.1e+02 Score=29.44 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCCCCHHHHH--
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYG---LPPSAVVYNSYIDGLLKGGNP--QKAVEIFQRMKRDCCQPSTETYT-- 228 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~-- 228 (352)
-|..|+..|...|+.++|+++|.+..+.. -..-...+..++....+.+.. +..+++-+...+..-.-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999987732 111123344466666666654 55666655555432111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 229 ----------LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 229 ----------~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
.-+-.|......+-++..++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1344566677788889999998876666778888888888765
No 357
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.51 E-value=57 Score=22.67 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 174 EAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243 (352)
Q Consensus 174 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (352)
.++++.+.++|+ .+..-...+-.+-...|+.+.|.+++..+. +| ...|..+++++...|+-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 345555555553 333333333332234466666666666666 42 33566666666666654444
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.33 E-value=1.1e+02 Score=25.72 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHhh
Q 045379 318 RASYNIMVDAYGRAGLHEGKCSYSLVELS 346 (352)
Q Consensus 318 ~~~~~~li~a~~~~g~~~~A~~~~~~~~~ 346 (352)
.+||--|..-+...|++++|..+|.+..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 46788888899999999999999975544
No 359
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=59.13 E-value=6.2 Score=32.29 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=39.1
Q ss_pred CcCcch-hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 045379 59 FPVLSP-TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLR 107 (352)
Q Consensus 59 ~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (352)
....+| +...++..|.+.|+.+.+.++.-.+.++.--.+.++..|.+.+
T Consensus 17 i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~ 66 (196)
T PF12816_consen 17 IKSLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHG 66 (196)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCC
Confidence 334444 7799999999999999999999998876666677777777666
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.08 E-value=21 Score=17.66 Aligned_cols=27 Identities=22% Similarity=0.018 Sum_probs=17.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
+|..+...+...|++++|...|....+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666667777777777766654
No 361
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.54 E-value=1.5e+02 Score=31.49 Aligned_cols=155 Identities=15% Similarity=0.022 Sum_probs=101.6
Q ss_pred HHccCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHH
Q 045379 129 YGQKSLHKKAEF------TYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREM-------RKYGLPPSAVVYNSY 195 (352)
Q Consensus 129 ~~~~g~~~~a~~------l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~g~~~~~~~~~~l 195 (352)
....|.+.++.+ ++......-.++....|..+-..+.+.|+.++|...-... .....+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 445566666666 6664444434456668888888999999999988765443 122333455667777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHH
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRD-------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC-------KPNICT 261 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-------~p~~~t 261 (352)
...+..+++...|...+.+.+.. .++|...+++.+=..+...++.+.|.+..+....... -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 77777777888888887776542 2455556666665556666888888888888765321 245567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 045379 262 YTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~ 283 (352)
+..+-+.+...+++..|++..+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7778777777777766555443
No 362
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=58.18 E-value=77 Score=23.77 Aligned_cols=77 Identities=12% Similarity=-0.040 Sum_probs=52.2
Q ss_pred ccCccccccc--cccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHh
Q 045379 44 RGKGWKYGSG--FVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMS 119 (352)
Q Consensus 44 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 119 (352)
|.+.+.+-.. .+.-..|.-.....+++.++.-.|..+.|.++++... ++....|
T Consensus 45 ~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN---------------------- 102 (127)
T PF04034_consen 45 NHRLLPYLVAANPVNYGKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELN---------------------- 102 (127)
T ss_pred CCccCchhhccCCcccCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHH----------------------
Confidence 4455543221 2334466666688999999999999999999999876 3333333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH
Q 045379 120 CVSILLIEAYGQKSLHKKAEFTYLEL 145 (352)
Q Consensus 120 ~~~~~li~~~~~~g~~~~a~~l~~~m 145 (352)
.-+++.|.++.+.++..++=++.
T Consensus 103 ---~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 103 ---KELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 44677888888777777665543
No 363
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=58.12 E-value=90 Score=26.82 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhcc-----C----cchhhHHh---HHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNK-----K----WDPIVLMS---CVSILLIEAY 129 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~-----~----~~~~~~~~---~~~~~li~~~ 129 (352)
..+.++..+-+.|....|+.+.+++. .=..+.-.++.......... . ...+.... ..|-.++..|
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C 163 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNC 163 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHH
Confidence 44778888888888888877665553 22334444444333222111 1 11111111 1455555556
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHcCC
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG-LPP-----SAVVYNSYIDGLLKGG 203 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~-----~~~~~~~li~~~~~~g 203 (352)
.|+=+...=..+|+.. | ++. .++.-|.+.|+.+.|-.++--+...+ ... +...-.-++......+
T Consensus 164 ~RKtE~~~W~~LF~~l---g---~P~---dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 164 ARKTEVRYWPYLFDYL---G---SPR---DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHhhHHHHHHHHHHhc---C---CHH---HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 6654443333333322 2 222 56777778888888877666665433 222 2344456778888889
Q ss_pred CHHHHHHHHHHHHHc
Q 045379 204 NPQKAVEIFQRMKRD 218 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~ 218 (352)
+|+-+.++.+-+..-
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999998877653
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.96 E-value=72 Score=24.58 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
++.+.+++.|.+++.. =..++..+.+.++.-.|.++++++.+.+...+..|--..+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444556666655443 23455555666666677777777776665555555555555555544
No 365
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=57.87 E-value=36 Score=31.20 Aligned_cols=132 Identities=14% Similarity=-0.094 Sum_probs=94.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELL----DSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMR----KYGL-PPSAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~~~~~ 190 (352)
.|..|-+.|.-.|+++.|+...+.-. +-|-+ .....+..+-.++.-.|+++.|.+.|+.-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 77778888888899999987665433 23322 234478889999999999999999887653 2221 22345
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD-----CCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+-+|-+.|.-...+++|+.++.+=... ...-...++..|-++|...|..++|+...+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888899999988653321 1123567888999999999999998887765543
No 366
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.66 E-value=1.8e+02 Score=27.88 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045379 67 QQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELL 146 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 146 (352)
..|+.-|.+.+.+++|..++..|. ||++...|.. +.+.+.+...+..--.+-...++...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn-----W~~~g~~C~~---------------~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN-----WNTMGEQCFH---------------CLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-----ccccHHHHHH---------------HHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 467788999999999999999885 3333322221 44555566666654455555555555
Q ss_pred hC
Q 045379 147 DS 148 (352)
Q Consensus 147 ~~ 148 (352)
..
T Consensus 472 gs 473 (545)
T PF11768_consen 472 GS 473 (545)
T ss_pred hh
Confidence 43
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.45 E-value=34 Score=21.95 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 045379 229 LMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
.+|.+|...|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35555556666666655555543
No 368
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.07 E-value=38 Score=30.23 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPP-SAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
..|.++|.+++|...|..-... .| |.+++..-..+|.+..++..|+.-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567777777777777765443 33 66777777777777777776665554443
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.48 E-value=48 Score=22.56 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPST--ETYTLMINLYGKASKSFMALK 245 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~ 245 (352)
..+.++|+..+....+.-..|.. .++..|+.+|+.-|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544443211111 234445555555555544443
No 370
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.46 E-value=69 Score=22.38 Aligned_cols=54 Identities=15% Similarity=-0.033 Sum_probs=28.4
Q ss_pred HHccCCHHHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLD----SRCIPT----EDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~----~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
..+.|++.+|.+.+.+..+ .+..+. ......+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777777555554443 222221 12222344445566777777777666543
No 371
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.38 E-value=1.5e+02 Score=26.37 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH-----------HHHHH-hcCCCCCHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQGA----GIEPDVYAYNALMEAYR-----------LISRM-HMGCEPDRASYNIM 324 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~~~~~~~li~a~~-----------~~~~m-~~~~~p~~~~~~~l 324 (352)
.+-.....||+.|+.+.|++.+.+..+. |.+.|+.-+.+=+.-+- ..+.+ ++|...+...-.-.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4555556666666666666666554332 55555544443332211 33333 55555543322222
Q ss_pred HHH--HHHcCCcchhHHHHH
Q 045379 325 VDA--YGRAGLHEGKCSYSL 342 (352)
Q Consensus 325 i~a--~~~~g~~~~A~~~~~ 342 (352)
-.+ |..-.++++|-.+|.
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfl 205 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFL 205 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 111 233456777777775
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.32 E-value=2.1e+02 Score=27.82 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=97.1
Q ss_pred HHccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLD-------SRCIPTEDTYALLLKAYCMSG-----LLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~-------~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
++...+.+.|...|....+ .| ++.....+-.+|.+.. +.+.|..++...-+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 6678899999999998877 55 3335666667776643 56779999998888875 3333332222
Q ss_pred HHHHc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 197 DGLLK-GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY--GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 197 ~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
..... -.+...|.++|...-+.|..+ ..-+-.++... ....+.+.|..++.+..+.| .|...--...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 245789999999999888542 22222222222 23456788999999988887 3333333333444444 6
Q ss_pred CHHHHHHHHHHHHHCCC
Q 045379 274 LCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 274 ~~~~a~~l~~~m~~~~~ 290 (352)
.++.+.-.+..+.+.|.
T Consensus 412 ~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGY 428 (552)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 77777776666665543
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.21 E-value=79 Score=25.55 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG 168 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 168 (352)
-..+-.|.+.|.+++|.+++++..+. |+......-+....+.+
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 34556788899999999999888874 55554455555444444
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.06 E-value=1.4e+02 Score=25.84 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=109.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR-CIPTED----TYALLLKAYCMSGLLEKAEAVFREMRKYGLP--------- 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------- 186 (352)
+.|++++.-..+.+.+-....|+.-.+.= -.-+.. |-..+-..|...|.+....++++++.+.--.
T Consensus 107 sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kK 186 (440)
T KOG1464|consen 107 SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKK 186 (440)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhc
Confidence 77888887777777776666665443210 001221 3345677788888899999999998764111
Q ss_pred --CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH-HHH---HhCC
Q 045379 187 --PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPSTETYTLMINLY-----GKASKSFMALKLF-NEM---RSHK 254 (352)
Q Consensus 187 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~l~-~~m---~~~g 254 (352)
.=...|..=|.+|..+.+-.+...++++.... .-.|.+..... |.-| .+.|++++|..-| +.. .+.|
T Consensus 187 GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 187 GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 11567888899999998888888888876542 23455554443 3333 4668888775433 333 3344
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 045379 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIE-------------PDVYAYNALMEAYRLISRMHMGCEPDRASY 321 (352)
Q Consensus 255 ~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-------------p~~~~~~~li~a~~~~~~m~~~~~p~~~~~ 321 (352)
.|-..|.--. +-+-+.+.+.|+. |.+...+.++.||- .-+...|
T Consensus 266 -spRRttCLKY-------------LVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ---------~NdI~eF 322 (440)
T KOG1464|consen 266 -SPRRTTCLKY-------------LVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQ---------NNDIIEF 322 (440)
T ss_pred -CcchhHHHHH-------------HHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHh---------cccHHHH
Confidence 3333332211 1122334455554 35566777888874 3455556
Q ss_pred HHHHHHHH
Q 045379 322 NIMVDAYG 329 (352)
Q Consensus 322 ~~li~a~~ 329 (352)
..++.+-.
T Consensus 323 E~Il~~~~ 330 (440)
T KOG1464|consen 323 ERILKSNR 330 (440)
T ss_pred HHHHHhhh
Confidence 66555433
No 375
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=54.11 E-value=87 Score=24.85 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
++.=.|.++++.+.+.+...+..|.-..|..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333344555555544443334433333333444333
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.43 E-value=1.8e+02 Score=26.62 Aligned_cols=60 Identities=17% Similarity=-0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED--TYALLLKAYC--MSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 183 (352)
+.... .+.+.+++..|.++|..+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 135 ~~~a~-~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAK-ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33334 344889999999999999987 655554 4555555554 467788999999887665
No 377
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.34 E-value=89 Score=24.81 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
.+++.|+.++..-. .++......++.-.|.++++.+.+.+..++..|.-..|..+...|-+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34556666555433 444444455666678888888888777777777766777777766543
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.75 E-value=1.6e+02 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 045379 263 TALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m 285 (352)
.-++..+.+.|++.+|+.+.+.+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34566677777777777766554
No 379
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.30 E-value=2.5e+02 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCH
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+++.+|...|++-.+.++++.+... |-+.-...||..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666665442 2223344556666666666653
No 380
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=51.98 E-value=1.1e+02 Score=27.96 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=30.2
Q ss_pred cCcCcCcch--hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHH
Q 045379 56 DGIFPVLSP--TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDL 99 (352)
Q Consensus 56 ~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l 99 (352)
|..+..+.. +...|...+-.+|++++|..++..++ +.||.++
T Consensus 122 gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~--VETygsm 165 (439)
T KOG1498|consen 122 GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ--VETYGSM 165 (439)
T ss_pred CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--hhhhhhh
Confidence 333444444 44788899999999999999999887 4555544
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.72 E-value=1.6e+02 Score=25.36 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhcCCH------HHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHH
Q 045379 65 TAQQILRFVQREVDS------NTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (352)
...-+++.|.+.+.. ++-.+++..++++...-..+++...+.-..+ ..-.........+...|.+.|++.+|
T Consensus 32 L~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~--~~~~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 32 LALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFG--SYKFGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp HHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS--S-TT--HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC--CCCCCCHHHHHHHHHHHHhhccHHHH
Confidence 335556666665422 2334555555544444455555544433111 11111122456666777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
..-|-.-.+ |+...+..++......|...++ +...-. .+--|...++...|...++...+.
T Consensus 110 ~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 110 ERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 655533222 3333333344433333433333 112222 233466677788888777666543
No 382
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.49 E-value=2.4e+02 Score=27.34 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 045379 93 HATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSRCI--PTEDTYALLLK 162 (352)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--p~~~~~~~li~ 162 (352)
..+|+..+.-....|.....-..++.+. .|-..+......|+.+-|..++..-.+--++ |....+.+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f- 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF- 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-
Confidence 3445544444444444433333333222 4444444444446666655555444332222 2222222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHHHH----
Q 045379 163 AYCMSGLLEKAEAVFREMRKYGLPPS-AVVYNSYIDGLLKGGNPQKAVE---IFQRMKRDCCQPSTETYTLMINLY---- 234 (352)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~---~~~~m~~~~~~~~~~~~~~li~~~---- 234 (352)
+-..|+++.|..+++...+.- |+ +..----+..-.+.|+.+.+.. ++....+. .-+....+.+.--+
T Consensus 376 -~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 -EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred -HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 223456666666666665542 22 1222222333344555555552 22222211 11122222222222
Q ss_pred -HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 235 -GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 235 -~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
.-.++.+.|..++.++.+. ++++...|..+++....++
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2235566666666666544 3455555555555554443
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.33 E-value=93 Score=22.66 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
..++|..+.+.+...+- ....+--+-+..+.+.|++++|. .. ......||...|.+|-.. +.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 34555555555555432 11222223344455556666551 11 111124555554444332 5555555555555
Q ss_pred HHHH
Q 045379 284 QLQG 287 (352)
Q Consensus 284 ~m~~ 287 (352)
++..
T Consensus 94 rla~ 97 (116)
T PF09477_consen 94 RLAS 97 (116)
T ss_dssp HHCT
T ss_pred HHHh
Confidence 5543
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.27 E-value=34 Score=29.88 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTET 226 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 226 (352)
.-|+..|....+.|++++|++++++.++.|+.--..+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3356777777777777777777777777775533333
No 385
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.33 E-value=1.7e+02 Score=25.52 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYGKA 237 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 237 (352)
.++....+..+.....+.+..+..- ..-...+..+...|++..|.++..+..+.--. ....+...|-
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~------ 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS------ 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh------
Confidence 3444444555555555555554332 34445556666778888888877766542000 0011111111
Q ss_pred CCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 238 SKSFMALKLFNEMRSHK-----CKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 238 g~~~~a~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
.++++-....+++.+.. ..-|+..|..++.+|.-.|+...+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 12222223222222210 1467777888888888777665544
No 386
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.11 E-value=1.2e+02 Score=23.59 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=35.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPST---ETYTLMINLYGKASKSFMALKLFNEMRSHK 254 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 254 (352)
...+++++++.+++.|.-. .|.. .++... .+...|+|.+|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3477888888888888753 3433 333333 3567888888988888887764
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.79 E-value=1.9e+02 Score=25.84 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHH
Q 045379 168 GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY--TLMINLYGKASKSFMALK 245 (352)
Q Consensus 168 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~ 245 (352)
--..+|+++|++..+.|- .+|+.- ..+...|. ..+-+.++. .++.+| .-|.-+..+.|+..+|.+
T Consensus 230 ~Ti~~AE~l~k~ALka~e----~~yr~s-qq~qh~~~------~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGE----TIYRQS-QQCQHQSP------QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhHHHHHHHHHHHHHHHH----HHHhhH-HHHhhhcc------chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 345677777777766542 333311 11111121 122233332 244444 345556668899999999
Q ss_pred HHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 246 LFNEMRSHKCKPNI---CTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 246 l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
.|+.+.+.- |=. .....||.++....-+.++..++.+.-+..
T Consensus 297 ~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 297 IMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999987652 211 234678888887777777777766654443
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.18 E-value=1.1e+02 Score=25.90 Aligned_cols=59 Identities=20% Similarity=0.031 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 228 TLMINLYGKASKSFMALKLFNEMRS----HK-CKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 228 ~~li~~~~~~g~~~~a~~l~~~m~~----~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+--+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4567788889999999999988742 22 23455567777788888888888877766654
No 389
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.28 E-value=1.6e+02 Score=24.41 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=52.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPT----EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
+-+.+.|++++|..-|.+.++.-.... ...|..-..+..+.+.++.|..--....+.+- ......-.-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 446677888888888877776432211 22344444556667777777766665555431 0111111223356666
Q ss_pred CCHHHHHHHHHHHHHc
Q 045379 203 GNPQKAVEIFQRMKRD 218 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~ 218 (352)
..+++|+.=|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777665
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.87 E-value=1.1e+02 Score=25.94 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKR----DC-CQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444556666666666666665532 11 2344455566666666666666666555444
No 391
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.70 E-value=2.1e+02 Score=32.72 Aligned_cols=115 Identities=14% Similarity=-0.004 Sum_probs=63.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRC--IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
++..+-.+++.+.+|.-.++.-...-. .-...-|-.+...|+..+++|.+..+...-... | .. ...|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~--sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P--SL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c--cH-HHHHHHHHh
Confidence 444566677788888777776311100 012334555555888888888877776641111 1 22 233334566
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALK 245 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (352)
.|+++.|...|+++.+.+ ++....++-++..-...|.++.++-
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHh
Confidence 788888888888887763 2224445544444444444444433
No 392
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.09 E-value=1.5e+02 Score=23.89 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC----CHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHcCCC
Q 045379 135 HKKAEFTYLELLDSRCIPTE-DTYALLLKAYCMSG----LLEKAEAVFREMRK-----YGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g----~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~ 204 (352)
+++|..-|++... +.|+- .++.++-.++...+ +..+|.+.|++..+ ....|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----
Confidence 3445555555554 44665 47777777776654 33445555544432 124688888888887753
Q ss_pred HHHHHHHHHHHHHcC
Q 045379 205 PQKAVEIFQRMKRDC 219 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~ 219 (352)
+|-.+..++.+.+
T Consensus 125 --kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 --KAPELHMEIHKQG 137 (186)
T ss_dssp --THHHHHHHHHHSS
T ss_pred --hhHHHHHHHHHHH
Confidence 4566666665554
No 393
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.58 E-value=1.8e+02 Score=24.46 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP---NICTY--TALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p---~~~t~--~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
.+...-+|.|+--|.-...+.+|-+.|.. +.|++| |..++ ..-|......|++++|.+..+++.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 33444455555555555555555444442 233333 22222 234555566777777777666664
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.95 E-value=2.1e+02 Score=25.12 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=98.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTED-------TYALLLKAYCMSGLLEKAEAVFREMR----KYGLPPSAVVYNS 194 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~~~~~~~~~ 194 (352)
.+-..+..++++|...|.++...|+..|.. +...+...|.+.|+...--++....+ +-.-+-..-...+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 345667899999999999999998876554 45567788889998776655554433 2222334456667
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHH
Q 045379 195 YIDGLLKGG-NPQKAVEIFQRMKRDCCQ-----PSTETYTLMINLYGKASKSFMALKLFNE----MRSHKCKPNICTYTA 264 (352)
Q Consensus 195 li~~~~~~g-~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~----m~~~g~~p~~~t~~~ 264 (352)
++..+.... .++.-..+.....+.-.. .-...=.-+|..+.+.|++.+|+.+... +.+..-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 777665543 456666665554432111 1112234588999999999999886654 444455666665444
Q ss_pred HH-HHHHhcCCHHHHHHHHHH
Q 045379 265 LV-NAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 265 li-~~~~~~g~~~~a~~l~~~ 284 (352)
+= ..|-...++.++..-+..
T Consensus 170 lESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHH
Confidence 32 345455555554444433
No 395
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.20 E-value=5.5e+02 Score=29.77 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHhcCCCC-------chhhHHHHHHHHHHHhhccCcchhhHH-hH--HHHHHHHHHHccCCHHH
Q 045379 68 QILRFVQREVDSNTIWDAFDSLPP-------THATWDDLINVSVQLRLNKKWDPIVLM-SC--VSILLIEAYGQKSLHKK 137 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~li~~~~~~g~~~~ 137 (352)
.|..+--++|.+.+|.-.|++.+. ...-+-.+...|+..++.+.++.+... .. +...-|-.....|++..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHH
Confidence 444466689999999999988431 112233344478888888777776652 22 44445666778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
|...|+.+.+.+. +...+++-++...-..|.++.+.-..+-....--+-...-++.=+.+-.+.++||..+....
T Consensus 1468 a~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999987652 23667887777777778887777755555443221122333444556678888888777766
No 396
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.17 E-value=2.1e+02 Score=25.04 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=99.4
Q ss_pred CHHHHHHHhcCC-C--CchhhHHHHHHHHHHHh-hccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 045379 78 DSNTIWDAFDSL-P--PTHATWDDLINVSVQLR-LNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT 153 (352)
Q Consensus 78 ~~~~A~~~~~~~-~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 153 (352)
.++.+++++..+ + ++...|..++..+.... ....-+..... .+...+. .-...+++++ |..++
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~--~~~~~~~--------~l~~~~~~~l---~~~~~ 121 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQE--AFRKFVR--------RLLEPLYERL---GWDPR 121 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHH--HHHHHHH--------HHHHHHHHH-----SSSS
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHH--------HHHHHHHHHc---CCCCc
Confidence 566778888777 5 67778888877665544 11101011100 0111000 0111222222 33222
Q ss_pred ------HH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 154 ------ED-TYALLLKAYCMSGL---LEKAEAVFREMRKYGL----PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 154 ------~~-~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
.. .-..++...+ |+ .+.|.+.|+.....+. ..+......++....+.|..+.-..+++.....
T Consensus 122 ~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~- 198 (324)
T PF11838_consen 122 PGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS- 198 (324)
T ss_dssp --SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT-
T ss_pred ccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc-
Confidence 22 2233355545 55 4577777877776422 345566677777788888866666666666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 045379 220 CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFAREGLC--EEAEEIFEQ 284 (352)
Q Consensus 220 ~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--~~a~~l~~~ 284 (352)
++...-..++.+.+...+.+...++++.....+ +++.. ...++.++...+.. +.+.+.+..
T Consensus 199 --~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 --TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp --STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 467788889999999999998889998888754 44443 34444555534433 666666654
No 397
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.71 E-value=1.9e+02 Score=24.27 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
++.++...|+.+.|.++++.+.-.. .+....+.++.. ..++.+.+|...-+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 5555555566666666665543221 122223333333 44456666655555443
No 398
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.68 E-value=62 Score=23.53 Aligned_cols=45 Identities=22% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL 169 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 169 (352)
+++.+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444455556666666666666655566555555555555553
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.32 E-value=43 Score=32.53 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=16.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (352)
++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+.+.+..+-+.+.
T Consensus 411 ~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 411 LLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544432211 22334444555555555554444444433
No 400
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.31 E-value=78 Score=22.82 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL--LEKAEAVFREMRKYGL 185 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 185 (352)
..++..|...|+.++|..-+.++... .--......++..+...++ -+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 44566777778888888888776431 1122244444555444422 3345556666666655
No 401
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.26 E-value=2e+02 Score=24.48 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC-----------CCCCHHHHHHHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-HK-----------CKPNICTYTALV 266 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g-----------~~p~~~t~~~li 266 (352)
|.+..+.+---++.+-.+..+++.+.....+++ +...|+..+|+..++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444444444445544444444443 2345555555555543321 11 146666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 267 NAFAREGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
..|.+ +++++|.+++.++-+.|+.|..
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 66543 5677777777777777776643
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.14 E-value=2.6e+02 Score=25.66 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--cCCCHHHHHHHHHHHHHc
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAV--VYNSYIDGLL--KGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 218 (352)
.....+.+++..|.++++++.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999988 666555 4555666554 467788999999987764
No 403
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.06 E-value=1.1e+02 Score=21.28 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=27.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 175 AVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 175 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
++|+-.+..|+..|..+|..++....-+-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666667777666666666666666666666643
No 404
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.64 E-value=2.9e+02 Score=26.18 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=80.6
Q ss_pred HHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 160 LLKAYCMSGLLEKAE-AVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 160 li~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
-|.-....|+.-.|- +++.-++...-.|+....-+.| +...|.++.+.+.+....+. +.....+...++......|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 344445566665554 4555555554445554444443 56789999999988776543 2335667888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 239 KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 239 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
++++|..+-+.|....++ +........-.--..|-++++.-.|+++..
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 999999999999876654 222222222233345677888888888753
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.21 E-value=3.7e+02 Score=27.17 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=95.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045379 164 YCMSGLLEKAEAVFREMRKYGLPP---SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240 (352)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 240 (352)
..+.+.+++|++..+.... ..| ........|..+...|++++|-...-.|... +..-|---+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 3455677777776655432 333 4567788888899999999999998888865 667777777777766665
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 045379 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRAS 320 (352)
Q Consensus 241 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~ 320 (352)
..... -+....-..+...|..++..|.. .+ ....++...+ -+...|+.+...-++-.+..+.-.+ ...
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~----Wp~~Lys~l~iisa~~~q~~q~Se~-~~L 507 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKE----WPGHLYSVLTIISATEPQIKQNSES-TAL 507 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHh----CChhhhhhhHHHhhcchHHHhhccc-hhH
Confidence 43322 22222122455678888888877 22 2222222221 2233343333222222333222222 223
Q ss_pred HHHHHHHHHHcCCcchhHHHHH
Q 045379 321 YNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 321 ~~~li~a~~~~g~~~~A~~~~~ 342 (352)
-..|...|...|++++|+..+.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~yl 529 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYL 529 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHH
Confidence 3449999999999999999875
No 406
>PRK14700 recombination factor protein RarA; Provisional
Probab=42.91 E-value=2.4e+02 Score=24.89 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=82.6
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCCC----Cc-h--hhHHHHHHHHHHHh-hccC-cchhhHHhHHHHHHHHHHHc
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSLP----PT-H--ATWDDLINVSVQLR-LNKK-WDPIVLMSCVSILLIEAYGQ 131 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~--~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~li~~~~~ 131 (352)
......+.|+.. ..||...|+.+++..- .+ . .|...+-.+..+.. ..++ .+ .+--+|+++.|
T Consensus 65 i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd-------~HYd~iSAf~K 135 (300)
T PRK14700 65 IDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGK-------EFYEQLSAFHK 135 (300)
T ss_pred cCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcc-------hhHHHHHHHHH
Confidence 334455666655 4599999988887621 11 1 34333333222110 1111 11 22334556555
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 045379 132 ---KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-----LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203 (352)
Q Consensus 132 ---~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 203 (352)
-.|.+.|+-++..|.+.|-.|.-..-..++-++-.-|. ...|...++-...-|.+--.......+-.++.+.
T Consensus 136 SiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aP 215 (300)
T PRK14700 136 SVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAP 215 (300)
T ss_pred HhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCC
Confidence 47889999999999999988888788888888777773 3456666666667776544444444444555555
Q ss_pred CHHHHHHHH
Q 045379 204 NPQKAVEIF 212 (352)
Q Consensus 204 ~~~~a~~~~ 212 (352)
+-..+...+
T Consensus 216 KSNs~y~A~ 224 (300)
T PRK14700 216 KSNACYKAL 224 (300)
T ss_pred CchHHHHHH
Confidence 544444333
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.45 E-value=2.8e+02 Score=25.63 Aligned_cols=177 Identities=13% Similarity=0.046 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSR--CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY---------GLPPSA 189 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~~~ 189 (352)
.+.-+.+.|..+|+++.|++.|.+.++.- .+-.+..|..+|..-...|+|..+.....+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 77888899999999999999999966432 1224456777888888889998888877776654 233444
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHhCCCCCC
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDC------CQPSTETYTLMINLYGKASKSFMALK-----LFNEMRSHKCKPN 258 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~-----l~~~m~~~g~~p~ 258 (352)
..+..+.....+ ++..|.+.|-...... +.|+-.+.-..+.+.+.-++-+--.. .|..+.+ ..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l~ 305 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----LE 305 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----cC
Confidence 555555554444 6666666654332211 23444444455555555544332222 2233322 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHH
Q 045379 259 ICTYTALVNAFAREGLCEEAEEIFEQLQGA-----GIEPDVYAYNALMEAYR 305 (352)
Q Consensus 259 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~~p~~~~~~~li~a~~ 305 (352)
+..+..+...| .+++...+++++++... =+.|.+.+.-.+|+.=+
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~ 355 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRA 355 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhh
Confidence 33344444444 35888999999888654 35677777666665544
No 408
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.39 E-value=2.3e+02 Score=24.72 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.++..+.+..+.....+.++.+. +...-...+......|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555566666666666666665 455566677777889999999998888764
No 409
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=42.38 E-value=1.3e+02 Score=21.69 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG--LCEEAEEIFEQLQGAG 289 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~l~~~m~~~~ 289 (352)
.++.-|...+++++|..-+.++.... -.......++..+...+ .-+.+..++..+.+.+
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45555556666666666665554221 12222333333333332 2333445555555444
No 410
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.35 E-value=1.6e+02 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
.-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555555555544444444333344444443
No 411
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.78 E-value=3.3e+02 Score=26.23 Aligned_cols=63 Identities=13% Similarity=-0.037 Sum_probs=38.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (352)
.-..++.-|.+.+++++|..++..|.=.... -=-.+.+.+.+...++.--++.+..++.+...
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3456778899999999999999988632110 01124444555555555455555555555544
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=41.64 E-value=4.1e+02 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
..|+......|+.++|...+.++......+
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 367778888999999999999988654443
No 413
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.47 E-value=1.6e+02 Score=22.60 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKA-SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLC 275 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 275 (352)
.+.+.|..++..= ..++..+... +..-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455566554432 2333444433 35667777777777776666666666666666665543
No 414
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.87 E-value=2.5e+02 Score=24.66 Aligned_cols=117 Identities=10% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHH
Q 045379 171 EKAEAVFREMRKYG--------LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC-CQPSTETYTLMINLYGKASKSF 241 (352)
Q Consensus 171 ~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~ 241 (352)
+..-.+++.+.+.| ++.|..-+|+|+.- ...++++--+-.++..+.+ -.--...+..+..-|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 242 MALKLFNEMRSH----KCKPNIC-TYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 242 ~a~~l~~~m~~~----g~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
.+.++..+.... |.+.|.. +-..|--.|....-+++-++..+.|.+.|
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 415
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.81 E-value=2.1e+02 Score=23.71 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 164 YCMSGLLEKAEAVFREMRKYGLPPS-----AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
+...|++++|..-|.+.... +++. ...|..-..++.+.+.++.|..-..+.++.+-. .....---..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 55666666666666666554 2222 223333344555556666665555555544210 1112222233455555
Q ss_pred CHHHHHHHHHHHHhC
Q 045379 239 KSFMALKLFNEMRSH 253 (352)
Q Consensus 239 ~~~~a~~l~~~m~~~ 253 (352)
.+++|+.=+..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 555565555555543
No 416
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.63 E-value=1.4e+02 Score=21.74 Aligned_cols=80 Identities=14% Similarity=-0.015 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (352)
.+.++|..+.+.+...+- .....--+-+..+.++|++++|+ ..- .....||...|-+|.. .+.|-.+++..-+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 455666666666665433 22233333444556666666661 111 1123455555554433 4566666666666
Q ss_pred HHHHHcC
Q 045379 213 QRMKRDC 219 (352)
Q Consensus 213 ~~m~~~~ 219 (352)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6555443
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.63 E-value=3.5e+02 Score=26.27 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC---CCCCCHHHHH-HHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC-MSGLLEKAEAVFREMRKY---GLPPSAVVYN-SYI 196 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~---g~~~~~~~~~-~li 196 (352)
.-.-|....+.|.+..|.++-+-+.+-...-|+.....+|+.|+ ++.++.=-+++++..+.. ...|| ..|. ++.
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA 423 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALA 423 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHH
Confidence 33445667888999999998888888766667888888888776 456777777777776543 33455 4444 344
Q ss_pred HHHHcCCC---HHHHHHHHHH
Q 045379 197 DGLLKGGN---PQKAVEIFQR 214 (352)
Q Consensus 197 ~~~~~~g~---~~~a~~~~~~ 214 (352)
..|.+... -+.|...+.+
T Consensus 424 ~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 424 RFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HHHHhcCChhhHHHHHHHHHH
Confidence 44444433 2334444443
No 418
>PRK09857 putative transposase; Provisional
Probab=40.47 E-value=2.3e+02 Score=24.81 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=14.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPN 258 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~ 258 (352)
..-+.+.|.-+++.++..+|...|+.++
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334444455566666666665443
No 419
>PRK09857 putative transposase; Provisional
Probab=40.30 E-value=2.6e+02 Score=24.57 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555556667777777777777654 233334444566667777777788888999988887665
No 420
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.24 E-value=2.1e+02 Score=23.50 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=49.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY-----TLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
...+..++++++|+.-++..... |.-..+ -.|-......|.+++|+.+++...+.+. .......--+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34456666777777666665543 111122 2234455566777777777666554322 1122233345666
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 045379 271 REGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 271 ~~g~~~~a~~l~~~m~~~~ 289 (352)
..|+-++|..-|.+..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777766654
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.20 E-value=2.8e+02 Score=27.52 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=27.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDS--RCIPTEDTYALLLKAYCMSGLLE 171 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~ 171 (352)
+|+.+|..+|++..+.++++.+... |-+.=...||..|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 5666666667777776666666532 22223335566666666666543
No 422
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=4.1e+02 Score=26.81 Aligned_cols=141 Identities=9% Similarity=0.041 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHhcCCCC------chhhHHHHHHHHHHHhhccCcchhhHHhH-----HHHHHHHHHHccCCHHHH
Q 045379 70 LRFVQREVDSNTIWDAFDSLPP------THATWDDLINVSVQLRLNKKWDPIVLMSC-----VSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a 138 (352)
++.+-+.+.+++|+.+-+..+. -...+...+..+...++...+.+....+- -|---+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4555666667777666655541 12245555555555554444443333222 344444444444443322
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------CC-------CCCHHHHHHHHHHH
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY------------GL-------PPSAVVYNSYIDGL 199 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~-------~~~~~~~~~li~~~ 199 (352)
+.-+.....+.++..|..++..+.. .+. ..+++...+- .. .-+...-..|+..|
T Consensus 443 ---a~~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 ---APYLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred ---hccCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 2222222223455566666666655 111 1111111110 00 11223344588888
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~ 217 (352)
...+++.+|.+++-..++
T Consensus 516 l~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHccChHHHHHHHHhccC
Confidence 889999999988877663
No 423
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.71 E-value=3.8e+02 Score=26.37 Aligned_cols=195 Identities=13% Similarity=0.035 Sum_probs=115.0
Q ss_pred CchhhHHHHHHHHHHHhhccC---cchhhHHhHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHH
Q 045379 91 PTHATWDDLINVSVQLRLNKK---WDPIVLMSCVSILLIEAYG-QKSLHKKAEFTYLELLDSRCIPTED-----TYALLL 161 (352)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~~~~p~~~-----~~~~li 161 (352)
.+...|..+|+...++-..-. -........++-.+...+. ...+++.|...+.+....--+++-. .-..++
T Consensus 28 ~~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~ 107 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLA 107 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 456677777776554332111 1111122225556666655 5788999999998775332222222 223456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKY----GLPPSAVVYNSY-IDGLLKGGNPQKAVEIFQRMKRDC---CQPSTETYTLMINL 233 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~ 233 (352)
..+.+.+... |....++..+. +..+-...|..+ +..+...+++..|.+.++.....- ..|-..++-.++.+
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA 186 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 6677766665 88888876543 344445555555 444444479999999998876532 23444555555555
Q ss_pred HH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 045379 234 YG--KASKSFMALKLFNEMRSHK---------CKPNICTYTALVNAFA--REGLCEEAEEIFEQLQ 286 (352)
Q Consensus 234 ~~--~~g~~~~a~~l~~~m~~~g---------~~p~~~t~~~li~~~~--~~g~~~~a~~l~~~m~ 286 (352)
.. +.+..+++.+..+++.... ..|...+|..++..++ ..|+++.+.+.++++.
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 4455677777777663321 2356667887776554 5788778777777664
No 424
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.43 E-value=79 Score=22.94 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=19.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 239 (352)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333334444455555555554444444444444444444443
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.32 E-value=2.1e+02 Score=23.25 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 045379 230 MINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+..|.+.|.+++|.++++...+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34556667777777777766655
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.02 E-value=2.4e+02 Score=23.83 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM-SGLLEKAEAVFREMRK 182 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 182 (352)
-++...-+.|+++++.+.++++.+.+...+..=-+.+-.+|-. -|....++.++....+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3567778889999999999999998887887777777777643 3555566666665544
No 427
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.91 E-value=2.5e+02 Score=24.07 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 045379 202 GGNPQKAVEIFQRMKR---DCC--QPSTETYTLMINLYGKASKSFMALKLFNEMRSH----KCKPNI-CTYTALVNAFAR 271 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~---~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~-~t~~~li~~~~~ 271 (352)
.-++++|+++|++-.. .+- .--...+...-..+++...+.+|-..|.+-... .-.|+. ..|-..|-.|..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 4456666666665432 110 001223444555666666666665555433211 001222 235555666667
Q ss_pred cCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQLQGAG---IEPDVYAYNALMEAYR 305 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~---~~p~~~~~~~li~a~~ 305 (352)
..++..|...++.-.+.+ -+-+..+...|+.+|.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 778889998888754432 2335567777777775
No 428
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.72 E-value=59 Score=23.89 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG 168 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 168 (352)
+++.....+..-.|.++++.+.+.+...+..|.-..|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44445555555566666666666655555554444444444444
No 429
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.87 E-value=3.9e+02 Score=25.96 Aligned_cols=149 Identities=14% Similarity=0.028 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH--H-HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcCC-
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLK--A-YCMSGLLEKAEAVFREMRK-------YGLPPSAVVYNSYIDGLLKGG- 203 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 203 (352)
..+|.++++...+.|.. .......++. + +....+.+.|...++...+ .|. .....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCC
Confidence 56788888888777642 2222222222 2 4456789999999998876 553 235666777777643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHH
Q 045379 204 ----NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK-ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA--REGLCE 276 (352)
Q Consensus 204 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~ 276 (352)
+.+.|..++.+.-+.|.+ +....-..+.-... ..+...|.++|......|..+ ..-+..++.... ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 567799999988887743 43333222222222 356789999999988877422 211222221111 244678
Q ss_pred HHHHHHHHHHHCC
Q 045379 277 EAEEIFEQLQGAG 289 (352)
Q Consensus 277 ~a~~l~~~m~~~~ 289 (352)
.|..++++..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888888777
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.86 E-value=1.4e+02 Score=20.79 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045379 265 LVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 265 li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+.......|+.++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455667888888888777654
No 431
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.67 E-value=2.5e+02 Score=23.64 Aligned_cols=213 Identities=14% Similarity=0.047 Sum_probs=116.5
Q ss_pred CCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 045379 77 VDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC-VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTED 155 (352)
Q Consensus 77 g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 155 (352)
.+-++|.-.|++- +-|.++.--....-+...+..+...+. +||-|.-.+...|+++.|.+.|+...+-+..-+-.
T Consensus 60 ~~eeRA~l~fERG----vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya 135 (297)
T COG4785 60 TDEERAQLLFERG----VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 135 (297)
T ss_pred ChHHHHHHHHHhc----chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH
Confidence 4556677777753 223333221111222222222322222 88999999999999999999999999865433333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR-MKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~ 233 (352)
..|-=|. +---|++..|.+=+-+.-+. .-.|-...|--++. ..-++.+|..-+.+ ..+ .|..-|..-|-.
T Consensus 136 ~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~ 207 (297)
T COG4785 136 HLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVE 207 (297)
T ss_pred Hhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHH
Confidence 3333232 23358888887766555443 23333333333332 23345566554433 332 244445443333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKP-------NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRL 306 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p-------~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~ 306 (352)
|.- |++. ...+++..... -.- =+.||--+..-+...|++++|..+|+-.... ..||-+=.-|++
T Consensus 208 ~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian------nVynfVE~RyA~ 278 (297)
T COG4785 208 FYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN------NVYNFVEHRYAL 278 (297)
T ss_pred HHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH------hHHHHHHHHHHH
Confidence 322 1111 12233333221 111 1346777888889999999999999988754 346766677777
Q ss_pred HHHH
Q 045379 307 ISRM 310 (352)
Q Consensus 307 ~~~m 310 (352)
|+.+
T Consensus 279 ~EL~ 282 (297)
T COG4785 279 LELS 282 (297)
T ss_pred HHHH
Confidence 7766
No 432
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=3e+02 Score=24.43 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=42.7
Q ss_pred HHcCCCHHHHHHHHH-HHHHcCCCCCHH----HHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045379 199 LLKGGNPQKAVEIFQ-RMKRDCCQPSTE----TYTLMINLYGKASKS-FMALKLFNEMRSHKCKPNICTYTALVNAFARE 272 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~-~m~~~~~~~~~~----~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 272 (352)
..+-..+++.....+ +|++.++ |+.. .|..++++---+.+- .-|.+.+++ ..+|.-|+.+++.+
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 334445556555544 4555554 4443 466666553322111 123333333 34699999999999
Q ss_pred CCHHHHHHHHHHH
Q 045379 273 GLCEEAEEIFEQL 285 (352)
Q Consensus 273 g~~~~a~~l~~~m 285 (352)
|+.+..+-+=-++
T Consensus 335 g~sEL~Ll~KvQe 347 (412)
T KOG2297|consen 335 GQSELELLLKVQE 347 (412)
T ss_pred ChHHHHHHHHHHH
Confidence 9988766544343
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.46 E-value=1.2e+02 Score=19.50 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=29.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcCCHHHHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYC-----MSGLLEKAEAV 176 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-----~~g~~~~a~~~ 176 (352)
+...|++=+|.++++.+=.....|....+..+|..+. +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4457788888888887765433345556666666553 45666666554
No 434
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.27 E-value=5.4e+02 Score=31.20 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=78.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh---CCCCC-CHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLD---SRCIP-TEDTYAL----LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~---~~~~p-~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
..-.|.+.|.+++|..+|++.+. .|..| +..=|.. -|.++.+..+||-..++= +.. ..+..++
T Consensus 2488 ~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~---k~~------~~~~lll 2558 (3550)
T KOG0889|consen 2488 VALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFG---KHE------GNYELLL 2558 (3550)
T ss_pred HHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc------CCceeee
Confidence 34457778888888888877653 22222 2222332 233333334444333332 111 2344556
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-----CCCCCHHHH--HHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCC---QPSTETYTLMINLYGKASK-SFMALKLFNEMRSH-----KCKPNICTY--TAL 265 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~-----g~~p~~~t~--~~l 265 (352)
.+..+..+|..-...+.+-.+.-. .+....|...+..+....+ ..+..++..+..+. .--|+.+++ ..+
T Consensus 2559 e~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~l 2638 (3550)
T KOG0889|consen 2559 ECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPL 2638 (3550)
T ss_pred ehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHH
Confidence 666667777766666665544321 1234455555444443332 33444444443322 113555443 456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 045379 266 VNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 266 i~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+.++..--...+|.+++..+.+.
T Consensus 2639 L~~~QqivEl~Ea~~I~s~l~~~ 2661 (3550)
T KOG0889|consen 2639 LQAFQQIVELQEAAQIYSDLNDG 2661 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 67777777777777777766544
No 435
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.74 E-value=2.8e+02 Score=23.67 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.....+..|.+.-++--|-...++..+ | ..+-..++ -|.+..+-+--.++.+-.+..+++-+.....+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 445556677777777666655555544 2 22222222 2445555555555555556667766666666655 45
Q ss_pred cCCCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRD-C-----------CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 268 (352)
..|+...|..-++.-... | -.|.+.....++..|.+ +++++|.+++.++-+.|..|.. ..+++.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 678888888777654321 1 25677777777776554 7899999999999999987754 34555555
Q ss_pred H
Q 045379 269 F 269 (352)
Q Consensus 269 ~ 269 (352)
+
T Consensus 282 ~ 282 (333)
T KOG0991|consen 282 V 282 (333)
T ss_pred H
Confidence 4
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.61 E-value=2.6e+02 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
++++.|.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4444555555555555544444444444445555555555543
No 437
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=35.42 E-value=5e+02 Score=26.51 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHhcCCCCc
Q 045379 68 QILRFVQREVDSNTIWDAFDSLPPT 92 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~~~ 92 (352)
.++-.+.++|+.+.|.+.+.+...+
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~ 354 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDF 354 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 5566677999999999988877643
No 438
>PRK02287 hypothetical protein; Provisional
Probab=35.41 E-value=2.3e+02 Score=22.60 Aligned_cols=65 Identities=11% Similarity=-0.038 Sum_probs=47.0
Q ss_pred cCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCH
Q 045379 58 IFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLH 135 (352)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 135 (352)
..|.-..+..+++.++.-.|..+.|.++++... ++....| .-+++.|.++.+.
T Consensus 102 Gkp~kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN-------------------------~elLe~Y~~~~~~ 156 (171)
T PRK02287 102 GKPFKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELN-------------------------KEPLEAYARAKDS 156 (171)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHH-------------------------HHHHHHHHccCCH
Confidence 355555677899999999999999999998764 2222222 4567888888888
Q ss_pred HHHHHHHHHHHh
Q 045379 136 KKAEFTYLELLD 147 (352)
Q Consensus 136 ~~a~~l~~~m~~ 147 (352)
++..++=++..+
T Consensus 157 ~ev~~~q~~~~~ 168 (171)
T PRK02287 157 EEIVEIQKEYLG 168 (171)
T ss_pred HHHHHHHHHHHh
Confidence 888777666553
No 439
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.85 E-value=5.1e+02 Score=26.10 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHhc
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-------------CKPNICTYTALVNAFARE 272 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-------------~~p~~~t~~~li~~~~~~ 272 (352)
+-...+-..+.+.|+..+......|+... .|++..++.+++++...| -..+......++.++.+
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 273 GLCEEAEEIFEQLQGAGIEPDVYA 296 (352)
Q Consensus 273 g~~~~a~~l~~~m~~~~~~p~~~~ 296 (352)
++...++.+++++.+.|+.+....
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHH
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.31 E-value=74 Score=23.35 Aligned_cols=44 Identities=11% Similarity=0.335 Sum_probs=19.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 230 MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
++......+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444444455555555555544444444444444444433
No 441
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.59 E-value=5e+02 Score=24.98 Aligned_cols=35 Identities=6% Similarity=0.135 Sum_probs=18.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 181 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
.+.|+..+......++.. ..|++..|..++++...
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia 226 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIA 226 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHh
Confidence 344555555555544443 24666666666655543
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.33 E-value=1.1e+02 Score=19.93 Aligned_cols=9 Identities=0% Similarity=-0.035 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 045379 241 FMALKLFNE 249 (352)
Q Consensus 241 ~~a~~l~~~ 249 (352)
++++..+.+
T Consensus 25 eDtiy~L~~ 33 (65)
T PF09454_consen 25 EDTIYYLDR 33 (65)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 443
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.28 E-value=3.1e+02 Score=22.53 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCC--------------QPSTETYTLMINLYGKASKSFMALKLFNE 249 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 249 (352)
+--+++-.|.+.-+|.+..++++.|.+..+ .+-=...|.....|.+.|..+.|+.++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345677788888999999999998876432 22334568888999999999999999884
No 444
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.23 E-value=4.5e+02 Score=25.75 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
.|+...|.+.+.........-..+....|.......|...+|..++.+..... ....-++-.+-++|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555544432222222334444444445555566666665554433 22334555566666666666666666
Q ss_pred HHHHHHc
Q 045379 212 FQRMKRD 218 (352)
Q Consensus 212 ~~~m~~~ 218 (352)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6665544
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.22 E-value=3.3e+02 Score=22.81 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=66.5
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 121 VSILLIEAYGQ--KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~--~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
.|...+.++.- .+++++|.+++. +-.+.|+- -.-++.++...|+.+.|..+++...-... +......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLS---HPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhC---CCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH
Confidence 66677777655 467777776662 22232332 22478888889999999999988543322 22333333444
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 66789999998887766521 1446666666666433
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.56 E-value=3.8e+02 Score=24.19 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 241 FMALKLFNEMRSHKCKPNIC----TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY 304 (352)
Q Consensus 241 ~~a~~l~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~ 304 (352)
+++..++.++... -|+.. -|-.+.......|.++.++.+|.+.+..|..|-...-..+++.+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
No 447
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=29.45 E-value=3.5e+02 Score=22.88 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+-.-.+.++.+.++.+.+..+.+=+.+
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333344455555777777777776654
No 448
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.44 E-value=1.9e+02 Score=19.86 Aligned_cols=32 Identities=3% Similarity=0.223 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 239 (352)
+.+.+.++++.+..+| ..+|..+.+++-..|.
T Consensus 45 r~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 3444444444444442 3344444444444443
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.25 E-value=3.2e+02 Score=22.42 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=20.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS 148 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~ 148 (352)
..+.++..|...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 6677777777777777777777777654
No 450
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.25 E-value=1.3e+02 Score=19.96 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAY 164 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 164 (352)
.|+.+.+.+++++..+.|..|.......+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355566666666666555555554444444443
No 451
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=29.23 E-value=5.4e+02 Score=25.01 Aligned_cols=177 Identities=14% Similarity=0.059 Sum_probs=112.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS--AVVYNSYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~ 198 (352)
+|+.-++--.+.|+++.+.-+|+...-- +..-...|-..+.-....|+.+.|..++....+..++.+ ...+.+.+
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-- 375 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-- 375 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--
Confidence 8999999999999999999999888641 112233444444444555999999888887776644333 33333333
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----H
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTE-TYTLMINLYGKASKSFMAL---KLFNEMRSHKCKPNICTYTALVNA-----F 269 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~---~l~~~m~~~g~~p~~~t~~~li~~-----~ 269 (352)
.-..|+++.|..+++...+.- |+.. .-..=+....+.|..+.+. .++....... -+..+...+.-- +
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHH
Confidence 334689999999999998874 4433 3333456667788888777 3333333221 222223333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
.-.++.+.|..++.++.+. +.++...|..+++-+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 3367889999999998764 3556666766665554
No 452
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.79 E-value=3.2e+02 Score=24.47 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 045379 228 TLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTAL 265 (352)
Q Consensus 228 ~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~l 265 (352)
=.|++.|.+.|.+++|.++........ --|+......+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 467888999999999988887765432 12554444433
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.63 E-value=4e+02 Score=23.28 Aligned_cols=81 Identities=11% Similarity=-0.039 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 205 PQKAVEIFQRMKRDCC----QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
.+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455566665555311 23344444555555566554444444444433 2345555666666666666666666
Q ss_pred HHHHHHHC
Q 045379 281 IFEQLQGA 288 (352)
Q Consensus 281 l~~~m~~~ 288 (352)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66665554
No 454
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.55 E-value=1.1e+02 Score=28.07 Aligned_cols=165 Identities=13% Similarity=-0.004 Sum_probs=84.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVV--YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE--TYTLMINLYGK 236 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~ 236 (352)
+...+..|+.+.+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 3445566777655444 45677776533 345556667777765 445555667665543 12234556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH-----
Q 045379 237 ASKSFMALKLFNEMRSHKCKPNIC---TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV---YAYNALMEAYR----- 305 (352)
Q Consensus 237 ~g~~~~a~~l~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~a~~----- 305 (352)
.|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..|+. .-.+.+..|+.
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 788877666554 33221111 1123344455667764 44444555655543 22334444443
Q ss_pred HHHHH-hcCCCCCHHH--HHHHHHHHHHcCCcchhHHHH
Q 045379 306 LISRM-HMGCEPDRAS--YNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 306 ~~~~m-~~~~~p~~~~--~~~li~a~~~~g~~~~A~~~~ 341 (352)
..+.+ +.|..++... -.+.+...+..|+.+-+.-++
T Consensus 150 ~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll 188 (413)
T PHA02875 150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL 188 (413)
T ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 55555 5555443221 123334445567766554443
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=3.3e+02 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 045379 162 KAYCMSGLLEKAEAVFREMR 181 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~ 181 (352)
-.....|++++|..-++.+.
T Consensus 37 I~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33444566666666665554
No 456
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=28.49 E-value=1.4e+02 Score=22.96 Aligned_cols=21 Identities=0% Similarity=0.044 Sum_probs=14.8
Q ss_pred HHHHHhcCCHHHHHHHhcCCC
Q 045379 70 LRFVQREVDSNTIWDAFDSLP 90 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~ 90 (352)
+..+++-|.++--.++|+++-
T Consensus 9 i~nla~ig~i~ll~~~ye~vi 29 (157)
T COG2405 9 IINLANIGEIDLLHALYEKVI 29 (157)
T ss_pred HHHHHhcchhhHHHHHhhccc
Confidence 444567788887788888764
No 457
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.43 E-value=1.2e+02 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKYGL 185 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 185 (352)
++++-+.++.-.++|+++++.|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456777888889999999999999873
No 458
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.16 E-value=2.5e+02 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~ 219 (352)
+++.+.++...++|+.+.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555666666666666555
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=4.4e+02 Score=23.64 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCCH
Q 045379 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR----DCCQPST 224 (352)
Q Consensus 150 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~ 224 (352)
+..|...++.+..+ +..+.++-.+..++..+. |-.--...+-.....|++.|+.+.|++.+....+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555443 222334444444444332 2222235566677789999999999988876544 4677777
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 225 ETYTLMINLY-GKASKSFMALKLFNEMRSHKCKPNI----CTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 225 ~~~~~li~~~-~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.-+.+=+.-+ ..+.-..+-++-.+.+.+.|..-+. .+|..+- |....++.+|..+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 6665544333 3333345556666666666654333 3454443 2345678888888877653
No 460
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=28.08 E-value=3.2e+02 Score=21.92 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
..++-..+.+.+..++. ...++..+.+.|...|..--.+.+..-.+.| ..-..+.+++.+
T Consensus 37 e~ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~q 96 (174)
T COG2137 37 EKELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQ 96 (174)
T ss_pred HHHHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHH
Confidence 44566666666665444 4455555555665555444445555555555 445566777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPNICTYTALVNAFAREG-LCEEAEEIFEQLQ 286 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~ 286 (352)
.|+ +..+....+..+......+.|.+++..-.... ..|+..-..-+...+...| .++.+..++..+.
T Consensus 97 kGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 97 KGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred cCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 874 55556666666666666666666666544433 3455444444444444444 3444555554443
No 461
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.90 E-value=2.5e+02 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=17.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 045379 160 LLKAYCMSGLLEKAEAVFREMRKYG 184 (352)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~g 184 (352)
+++-..++.-.++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666777777777777777776
No 462
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.60 E-value=2.3e+02 Score=23.57 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCI-------PTEDTYALLLKAYCMSG---------LLEKAEAVFREMRKYGLPP-SAVVYNSYI 196 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~-------p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~~-~~~~~~~li 196 (352)
..+.|..++..|--..++ -...-|..+..+|++.| +.+.-.++++-..+.|++. -++.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 456777777777543222 25556788888888877 3455566666666666532 236677777
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~ 216 (352)
+--...-++++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 65555556777777776654
No 463
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.22 E-value=1.6e+02 Score=18.19 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=10.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 045379 198 GLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~ 218 (352)
++.+.|++++|.+..+.+.+.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhh
Confidence 445555555555555555543
No 464
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.91 E-value=1.1e+02 Score=20.89 Aligned_cols=27 Identities=11% Similarity=-0.111 Sum_probs=23.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRC 150 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~ 150 (352)
++++.+.++.-.++|+++++.|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 467778888999999999999998874
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.71 E-value=5.8e+02 Score=24.53 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHcC
Q 045379 137 KAEFTYLEL-LDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-------------PPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 137 ~a~~l~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------~~~~~~~~~li~~~~~~ 202 (352)
+..+.+... .+.|+..+......++... .|+...|..+++++...|- .++....-.++.+.. .
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~ 258 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-A 258 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-c
Confidence 333444333 4567777777777666553 5889999999888765431 112222333344333 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 045379 203 GNPQKAVEIFQRMKRDCCQPS 223 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~ 223 (352)
++.+.+..++++|.+.|..|.
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 666667777777776665543
No 466
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.02 E-value=2.2e+02 Score=19.36 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP 186 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 186 (352)
++.....++..+.+ ++++++...+.++...|++
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s 36 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYS 36 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCC
Confidence 33444444444443 3566666666665555553
No 467
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.66 E-value=1.2e+02 Score=17.29 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCcchhHHHHH--HHhhccCCCC
Q 045379 319 ASYNIMVDAYGRAGLHEGKCSYSL--VELSVKHYPA 352 (352)
Q Consensus 319 ~~~~~li~a~~~~g~~~~A~~~~~--~~~~~~~y~~ 352 (352)
.+|..|.+.-...+++++|.+-|. +.-..+++||
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467788888888999999998885 3344445543
No 468
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.42 E-value=5.4e+02 Score=23.77 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHh---CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045379 136 KKAEFTYLELLD---SRC-IPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181 (352)
Q Consensus 136 ~~a~~l~~~m~~---~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (352)
++...++..... .|+ ..+......++..+ .|+...+..+++...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 455555554432 133 44555555554433 567666666666553
No 469
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=24.72 E-value=1.4e+02 Score=16.67 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCcchhHHHHH
Q 045379 321 YNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 321 ~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+..+.-.+-..|+.++|.++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4456677889999999999944
No 470
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.90 E-value=1.8e+02 Score=26.98 Aligned_cols=105 Identities=9% Similarity=-0.046 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccC-----CH---HHHHHHHHHHH
Q 045379 75 REVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKS-----LH---KKAEFTYLELL 146 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~---~~a~~l~~~m~ 146 (352)
+.|++++|+..|..+. +...+-.........++.+++..+.-|..-++.=.... .. +..+++-.-+-
T Consensus 216 t~gKF~eA~~~Fr~iL-----~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFT 290 (422)
T PF06957_consen 216 TAGKFEEAIEIFRSIL-----HSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFT 290 (422)
T ss_dssp HTT-HHHHHHHHHHHH-----HHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHH-----HHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 6799999998887542 11111111111222233344444443433333211111 11 22233433444
Q ss_pred hCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 045379 147 DSRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYG 184 (352)
Q Consensus 147 ~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g 184 (352)
...+.|... ++..-|..+.+.+++-.|-.+-+++.+.+
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Confidence 444444433 44455566666677777777766666654
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.82 E-value=5.2e+02 Score=23.01 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 243 ALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 243 a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
=.++++.|...++.|.-..+..+.-.+.+.=.+.++..+++.+.. |..-|..|+..|+
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 357888888999999999999999999999999999999999864 4444888888887
No 472
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=23.14 E-value=3.3e+02 Score=20.45 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHc-------CCCHHHHHHHHHHHHHcCCCCCHHH
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN---SYIDGLLK-------GGNPQKAVEIFQRMKRDCCQPSTET 226 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~-------~g~~~~a~~~~~~m~~~~~~~~~~~ 226 (352)
+...++.+.+..-.-.+.++..++....-.|....-. ..|+.|-. .....-.-.+++.+.+.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 4445555555555556666666666554444322211 12222221 1122333344455555555544445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 227 YTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
+.-+=.-|.+..+..||-.+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 555555555666666666666654
No 473
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.13 E-value=4.9e+02 Score=22.38 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=98.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
.+-....+..+|.++|...-+.|.. .....+-..|.. ..+..+|...++..-+.|..+-..+...+-..|..-
T Consensus 85 ~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g 161 (292)
T COG0790 85 AGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG 161 (292)
T ss_pred hccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence 3334456688899999877776542 233334444444 347889999999999988765423344444444443
Q ss_pred -----C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 203 -----G--NPQKAVEIFQRMKRDCCQPSTETYTLMINLYG----KASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 203 -----g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
- +...|...|.+.-..+ +......+-..|. -..+.++|...|....+.|. ......+- .+..
T Consensus 162 ~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~ 234 (292)
T COG0790 162 LQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYL 234 (292)
T ss_pred hhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHh
Confidence 1 2236888888888776 4444444444443 34577899999998888775 22222222 3444
Q ss_pred cC---------------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 045379 272 EG---------------LCEEAEEIFEQLQGAGIEPDVYAYN 298 (352)
Q Consensus 272 ~g---------------~~~~a~~l~~~m~~~~~~p~~~~~~ 298 (352)
.| +...|...+......+.........
T Consensus 235 ~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 235 NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 44 6677777777777666555444443
No 474
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.02 E-value=6.8e+02 Score=24.04 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=46.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC------------KPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~------------~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
+.|+..+......++... .|++..+...++.+...+- .+.......+++++ ..++.++|+.++.+
T Consensus 190 ~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~ 266 (504)
T PRK14963 190 AEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQ 266 (504)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 345554555444444322 3555555555555433321 12233345566665 55899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHH
Q 045379 285 LQGAGIEPDVYAYNALMEAY 304 (352)
Q Consensus 285 m~~~~~~p~~~~~~~li~a~ 304 (352)
+...|..|. .....+...+
T Consensus 267 Ll~~G~~~~-~Il~~L~~~~ 285 (504)
T PRK14963 267 LYRDGFAAR-TLVEGLLEAF 285 (504)
T ss_pred HHHcCCCHH-HHHHHHHHHH
Confidence 998886554 3333343333
No 475
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.84 E-value=7.2e+02 Score=24.46 Aligned_cols=54 Identities=20% Similarity=0.067 Sum_probs=24.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..+.|....|..++.+-.... .....++-.+-++|....++++|++-|++..+.
T Consensus 652 ~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 652 LIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 333444444544444433322 122334444455555555555555555555443
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.45 E-value=1.4e+02 Score=16.34 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETY 227 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~ 227 (352)
++.|..+|++.... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 45555566655543 3555444
No 477
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=22.39 E-value=1.4e+02 Score=27.77 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHH---
Q 045379 168 GLLEKAEAVFREMRKYG-LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC---------CQPSTETYTLMINLY--- 234 (352)
Q Consensus 168 g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~~~~~~~~~li~~~--- 234 (352)
+.+++-.+.++.+.+.| . .....-++.|.+.++++.|.+..++-.+.| +......+..|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~~----dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~P 100 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAA----DVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFP 100 (428)
T ss_pred CCHHHHHHHHHHHHhcCCC----CeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCC
Q ss_pred --HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHH----HCCCCCCHHHHHHHHHHHH
Q 045379 235 --GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF---EQLQ----GAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 235 --~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~---~~m~----~~~~~p~~~~~~~li~a~~ 305 (352)
.++|-.+ +..+++-+...|+.-....--+--.-|.+.-.++++..-+ .++. +.|+..+.++|.-+...++
T Consensus 101 lqvRhGt~d-~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~ 179 (428)
T cd00245 101 VQVRHGTPD-ARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV 179 (428)
T ss_pred EeeccCCcc-HHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 045379 306 LISRMHMGCEPDRASYNIMVDAYGRAGL 333 (352)
Q Consensus 306 ~~~~m~~~~~p~~~~~~~li~a~~~~g~ 333 (352)
+|....-.+.++++...|.
T Consensus 180 ---------pptla~aiaylea~la~gl 198 (428)
T cd00245 180 ---------PPSILIAIQILEALLAAEQ 198 (428)
T ss_pred ---------CcHHHHHHHHHHHHHHccC
No 478
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.18 E-value=5e+02 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 265 li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
+...-+..+++.+|..+|+++....+.-+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33444567889999999999876644433
No 479
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=22.09 E-value=4.3e+02 Score=21.40 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 241 FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 241 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
++|.+.|+...+. .|+..+|+.-+.... +|-+++.++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4444444444443 678778877777653 3556666665554
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.86 E-value=6.4e+02 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM 166 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 166 (352)
.+.+.|+.++..|.+.|..|....-..++.++-.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566666666666665555554444444444333
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.57 E-value=6.3e+02 Score=23.10 Aligned_cols=148 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 045379 73 VQREVDSNTIWDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRC 150 (352)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 150 (352)
|....++++|+.+|+..- |....-...+.+| +.-++-...-.|..-..-+-=..-..+-.
T Consensus 193 ciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaY------------------kkylLvsLI~~GK~~ql~k~ts~~~~r~~ 254 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVTTPAMAVSHIHLEAY------------------KKYLLVSLILTGKVFQLPKNTSQNAGRFF 254 (422)
T ss_pred eeccccHHHHHHHHHHHHhcchhHHHHHHHHHH------------------HHHHHHHhhhcCceeeccccchhhhHHhc
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 151 IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 151 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
+|-...|.-+.++|.+...-+ .+.+...-.++ +.+.++..-|......+.++++..=..+|..|
T Consensus 255 K~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~~r---------------F~kDnnt~l~k~av~sl~k~nI~rltktF~sL 318 (422)
T KOG2582|consen 255 KPMSNPYHEFLNVYLKDSSTE-LRTLVKKHSER---------------FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSL 318 (422)
T ss_pred ccCCchHHHHHHHHhcCCcHH-HHHHHHHHHHH---------------HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHhCC
Q 045379 231 ----INLYGKASKSFMALKLFNEMRSHK 254 (352)
Q Consensus 231 ----i~~~~~~g~~~~a~~l~~~m~~~g 254 (352)
|.-.++.+..++|.+..-+|.+.|
T Consensus 319 sL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 319 SLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHhccC
No 482
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.54 E-value=4.2e+02 Score=24.44 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=52.2
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--H--HHHhcCCHHHHHHHH
Q 045379 175 AVFREMRKYGLPPSAV---VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI--N--LYGKASKSFMALKLF 247 (352)
Q Consensus 175 ~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li--~--~~~~~g~~~~a~~l~ 247 (352)
.+++.+.+.|+.|+.. +-.+++.++...+..++..+++.... .+...+...- . .+...+........+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHH
Confidence 4566677788877753 24456666665666666666655311 1111111100 0 011111222333444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 248 NEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 248 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
..+...|.-.|...+...+..+...-.+++|.+--
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rT 209 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYART 209 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhh
Confidence 55555666667777777777766666667766443
No 483
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=21.21 E-value=3.8e+02 Score=20.47 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HHHHHhcCCCCCHHHHHHHH
Q 045379 266 VNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR--LISRMHMGCEPDRASYNIMV 325 (352)
Q Consensus 266 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~--~~~~m~~~~~p~~~~~~~li 325 (352)
|.-=+..++.....+.|..+..++ ......-..++++++ +|+....|-+||...|...+
T Consensus 74 I~EQ~sidqP~GIr~a~~~L~~r~-~~~h~A~H~~mecL~e~iW~aQR~g~~pD~~aYl~~l 134 (137)
T PF08897_consen 74 IQEQLSIDQPPGIRAAYERLAARG-GDRHEAEHAMMECLAEMIWEAQRNGRPPDEAAYLACL 134 (137)
T ss_pred HHHHHhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344445667777777777777652 223355566666666 66666777788888876654
No 484
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.15 E-value=2.2e+02 Score=21.91 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALME 302 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 302 (352)
-..|-+.+...++++|.+.|+..+..+|+.++.
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 344666666677777777777777666665553
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=4.7e+02 Score=21.45 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHHHhCCCCCCHH----H
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD--CCQPSTETYTLMIN-LYGKASK--SFMALKLFNEMRSHKCKPNIC----T 261 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~-~~~~~g~--~~~a~~l~~~m~~~g~~p~~~----t 261 (352)
-+....-.....|++++|..-++++.+. .++.-...|..+.. +++.++. +-+|.-++.-+.+. ..|+.. .
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~ 109 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVP 109 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCC
Confidence 3444444556678888888888776542 11113445666665 6666655 44666666666543 333332 1
Q ss_pred HHHHHHH--------------HHhcCCHHHHHHHHHHHHH
Q 045379 262 YTALVNA--------------FAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 262 ~~~li~~--------------~~~~g~~~~a~~l~~~m~~ 287 (352)
....|.+ ..+.|+++.|.+.++-|.+
T Consensus 110 ~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 110 PIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1112222 2467889999999888864
No 486
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=20.93 E-value=4.3e+02 Score=23.71 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=17.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELL 146 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~ 146 (352)
-.|++.|.+.|.+++|+++.....
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHH
Confidence 456778888888888888777665
No 487
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.88 E-value=4.4e+02 Score=24.32 Aligned_cols=132 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred HHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--H--HHHcCCCHHHHHHHH
Q 045379 140 FTYLELLDSRCIPTED---TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI--D--GLLKGGNPQKAVEIF 212 (352)
Q Consensus 140 ~l~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--~--~~~~~g~~~~a~~~~ 212 (352)
-+++.+.+.|+.|+.. +--+++.++...+..++..+++... .+ +...+...- . .+...+........+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~---~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD---GI--DLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc---ch--hhhhhhhhccccccccccccccchHHHHH
Confidence 4566777889988766 4556666666667777777776541 11 111111100 0 011112222334445
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------hCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 213 QRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR----------------SHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 213 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~----------------~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
+.+.+.|.-.|...+...+..+...--+++|.+--.... ..--.||...|.++..+|+--+-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 555666666677777666666555555666653222110 0112588888888888877655443
No 488
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.70 E-value=7.6e+02 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=19.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 181 RKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 181 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
.+.|+..+......++.. ..|++..|...++++.
T Consensus 201 ~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 201 KQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 344555555555555442 3466666666666653
No 489
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.66 E-value=7.5e+02 Score=23.63 Aligned_cols=42 Identities=7% Similarity=-0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045379 138 AEFTYLELL-DSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMR 181 (352)
Q Consensus 138 a~~l~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (352)
..+.+.... ..|+..+......+... ..|+...|+.++++..
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 334444333 45666666666555543 4577888888887754
No 490
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.61 E-value=2.4e+02 Score=18.95 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQLQ 286 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~ 286 (352)
.|++++|.++|.+..
T Consensus 19 ~gny~eA~~lY~~al 33 (75)
T cd02680 19 KGNAEEAIELYTEAV 33 (75)
T ss_pred hhhHHHHHHHHHHHH
Confidence 345555555554443
No 491
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=4.4e+02 Score=22.01 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=54.4
Q ss_pred cccCccccccc--cccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH
Q 045379 43 LRGKGWKYGSG--FVDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC 120 (352)
Q Consensus 43 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (352)
-|.+.+.+.-. .+.-..|.-.....+|...+.-+|-.+.|..++++.. |. .+|..
T Consensus 125 ~h~RLLP~lVAANpVNYGrP~rLnCvEAlaA~l~I~G~~e~A~~lL~~F~-----wG---~~Fl~--------------- 181 (263)
T KOG3154|consen 125 RHERLLPYLVAANPVNYGRPWRLNCVEALAACLYICGFPEEARELLDKFK-----WG---HAFLE--------------- 181 (263)
T ss_pred CcccccchhhhcCccccCCCceecHHHHHHhHeeeecChhHHHHHHhcCc-----ch---HHHHH---------------
Confidence 35666553322 2344456666677899999999999999999998774 21 11111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
.=--|++.|+++++.++..++=++.++
T Consensus 182 lN~~lLd~Ya~C~~s~ev~~~qn~~Le 208 (263)
T KOG3154|consen 182 LNKDLLDEYAKCASSAEVVEVQNEFLE 208 (263)
T ss_pred HhHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 113477888898888888877666654
No 492
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.07 E-value=1.6e+02 Score=20.90 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=18.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKA 173 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 173 (352)
+...++.|..+|..+.++|.- +...+.-+......-++.|.-
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL 77 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL 77 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH
Confidence 334555555555555555532 222222344444444444433
Done!