Query 045379
Match_columns 352
No_of_seqs 347 out of 2911
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.4E-35 1.2E-39 274.1 24.8 185 121-305 28-221 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.8E-33 6.3E-38 262.4 22.2 197 136-332 7-224 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.5E-24 1.5E-28 204.2 25.0 273 66-342 275-574 (597)
4 2xpi_A Anaphase-promoting comp 99.9 9.4E-23 3.2E-27 195.0 31.5 188 152-342 303-540 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.2E-18 7.4E-23 156.0 34.4 280 59-343 63-364 (388)
6 3spa_A Mtrpol, DNA-directed RN 99.8 3.6E-21 1.2E-25 185.8 11.6 148 121-273 129-286 (1134)
7 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-21 9.2E-26 186.7 9.6 114 156-269 129-246 (1134)
8 1w3b_A UDP-N-acetylglucosamine 99.8 1.9E-17 6.6E-22 149.8 30.9 281 59-344 29-331 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 1.2E-17 4.2E-22 153.8 29.3 277 59-342 22-353 (450)
10 3hym_B Cell division cycle pro 99.7 3.9E-15 1.3E-19 130.9 27.0 225 61-288 20-265 (330)
11 3ieg_A DNAJ homolog subfamily 99.7 5.2E-14 1.8E-18 124.9 31.7 271 65-342 5-330 (359)
12 1fch_A Peroxisomal targeting s 99.7 3.3E-15 1.1E-19 133.7 23.9 263 63-342 64-354 (368)
13 2y4t_A DNAJ homolog subfamily 99.7 1.5E-14 5.2E-19 133.0 28.7 261 59-325 56-370 (450)
14 4eqf_A PEX5-related protein; a 99.7 2.1E-15 7.2E-20 135.1 20.5 267 61-342 63-351 (365)
15 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.1E-19 127.6 22.3 262 64-342 22-310 (327)
16 2gw1_A Mitochondrial precursor 99.7 9.3E-15 3.2E-19 136.5 22.4 274 65-342 8-396 (514)
17 1b89_A Protein (clathrin heavy 99.6 2.9E-16 1E-20 141.1 9.0 217 74-344 14-233 (449)
18 1b89_A Protein (clathrin heavy 99.6 2.4E-15 8.1E-20 135.2 14.7 250 64-342 33-306 (449)
19 4eqf_A PEX5-related protein; a 99.6 5.5E-14 1.9E-18 125.8 22.5 239 77-342 45-305 (365)
20 3mkr_A Coatomer subunit epsilo 99.6 2.5E-13 8.6E-18 118.0 25.5 188 121-342 67-259 (291)
21 3hym_B Cell division cycle pro 99.6 2.1E-13 7E-18 119.8 24.0 226 60-288 53-299 (330)
22 3fp2_A TPR repeat-containing p 99.6 1.5E-13 5.2E-18 129.2 24.2 217 121-342 245-486 (537)
23 1fch_A Peroxisomal targeting s 99.6 1.4E-13 4.9E-18 123.0 21.3 242 73-342 35-309 (368)
24 3mkr_A Coatomer subunit epsilo 99.6 6.4E-13 2.2E-17 115.5 24.4 221 65-297 36-271 (291)
25 2pl2_A Hypothetical conserved 99.6 4.1E-13 1.4E-17 111.5 22.1 192 121-342 7-209 (217)
26 2gw1_A Mitochondrial precursor 99.6 7E-13 2.4E-17 123.8 24.4 217 121-342 239-473 (514)
27 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-12 8.6E-17 108.6 24.4 194 121-342 39-233 (252)
28 3fp2_A TPR repeat-containing p 99.5 1.3E-12 4.4E-17 122.8 24.1 274 64-342 26-402 (537)
29 2vq2_A PILW, putative fimbrial 99.5 3.6E-12 1.2E-16 105.3 23.5 210 60-298 5-219 (225)
30 3ieg_A DNAJ homolog subfamily 99.5 2.1E-11 7.2E-16 108.0 29.8 265 60-330 34-352 (359)
31 3uq3_A Heat shock protein STI1 99.5 1.6E-12 5.5E-17 109.8 21.4 209 121-342 7-231 (258)
32 2pl2_A Hypothetical conserved 99.5 7.7E-13 2.7E-17 109.8 18.6 195 61-286 3-212 (217)
33 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.4E-16 102.6 25.4 194 121-342 10-206 (225)
34 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-11 4E-16 104.4 25.9 200 63-288 37-238 (252)
35 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-12 9.5E-17 107.5 20.9 193 121-342 25-217 (243)
36 3cv0_A Peroxisome targeting si 99.5 9.5E-13 3.2E-17 115.3 18.7 224 60-286 52-313 (327)
37 1ouv_A Conserved hypothetical 99.5 7.9E-11 2.7E-15 100.9 30.0 215 63-342 6-246 (273)
38 3uq3_A Heat shock protein STI1 99.5 9E-12 3.1E-16 105.2 21.1 213 64-288 6-236 (258)
39 2q7f_A YRRB protein; TPR, prot 99.4 2.5E-11 8.4E-16 101.6 22.1 199 63-288 23-222 (243)
40 3nf1_A KLC 1, kinesin light ch 99.4 4.4E-12 1.5E-16 110.2 17.6 222 121-342 29-302 (311)
41 3vtx_A MAMA; tetratricopeptide 99.4 8.5E-11 2.9E-15 94.3 22.6 164 121-288 7-170 (184)
42 3nf1_A KLC 1, kinesin light ch 99.4 1E-11 3.6E-16 107.8 17.1 219 55-287 19-306 (311)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.9E-12 9.8E-17 109.5 12.2 162 121-287 79-243 (275)
44 1xi4_A Clathrin heavy chain; a 99.4 3.5E-10 1.2E-14 113.5 28.0 243 67-342 1053-1304(1630)
45 3u4t_A TPR repeat-containing p 99.4 4.7E-10 1.6E-14 95.6 25.4 215 123-342 7-245 (272)
46 3u4t_A TPR repeat-containing p 99.4 5.3E-11 1.8E-15 101.5 19.3 221 65-288 5-250 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.4 9.4E-11 3.2E-15 100.0 20.1 205 131-342 17-239 (275)
48 1ouv_A Conserved hypothetical 99.4 2E-09 6.9E-14 92.0 28.5 183 121-342 8-210 (273)
49 3as5_A MAMA; tetratricopeptide 99.4 2E-10 7E-15 91.4 20.5 164 121-288 10-173 (186)
50 2h6f_A Protein farnesyltransfe 99.3 1.3E-10 4.3E-15 104.7 20.5 221 62-287 96-347 (382)
51 3vtx_A MAMA; tetratricopeptide 99.3 4.8E-10 1.6E-14 89.9 22.0 163 152-342 3-165 (184)
52 4g1t_A Interferon-induced prot 99.3 2.4E-10 8.3E-15 105.6 22.6 294 44-342 117-454 (472)
53 4abn_A Tetratricopeptide repea 99.3 1.2E-10 4E-15 108.3 19.8 163 121-288 104-287 (474)
54 4a1s_A PINS, partner of inscut 99.3 3.7E-11 1.3E-15 109.0 15.5 259 65-342 50-367 (411)
55 2xm6_A Protein corresponding t 99.3 2.3E-08 7.9E-13 93.1 33.4 261 64-342 76-391 (490)
56 3edt_B KLC 2, kinesin light ch 99.3 5.2E-11 1.8E-15 101.7 12.8 214 130-343 12-277 (283)
57 3sf4_A G-protein-signaling mod 99.3 1.5E-10 5.2E-15 104.4 16.3 258 65-342 11-331 (406)
58 2ond_A Cleavage stimulation fa 99.3 3.8E-09 1.3E-13 92.2 24.6 164 121-288 101-270 (308)
59 4gyw_A UDP-N-acetylglucosamine 99.2 6.1E-10 2.1E-14 108.1 21.1 163 121-287 11-173 (723)
60 2h6f_A Protein farnesyltransfe 99.2 5.8E-10 2E-14 100.3 19.4 215 121-342 99-342 (382)
61 3ro2_A PINS homolog, G-protein 99.2 1.5E-10 5E-15 101.3 15.2 257 67-342 9-327 (338)
62 1xi4_A Clathrin heavy chain; a 99.2 5.9E-09 2E-13 104.8 27.9 243 75-341 1088-1378(1630)
63 2xm6_A Protein corresponding t 99.2 4.3E-08 1.5E-12 91.3 32.6 262 64-343 112-428 (490)
64 3ulq_A Response regulator aspa 99.2 7.6E-10 2.6E-14 99.7 20.0 216 125-342 109-363 (383)
65 3as5_A MAMA; tetratricopeptide 99.2 2.7E-09 9.1E-14 84.8 21.2 164 64-253 9-173 (186)
66 4gyw_A UDP-N-acetylglucosamine 99.2 2.5E-09 8.6E-14 103.8 21.9 162 153-342 8-169 (723)
67 3q15_A PSP28, response regulat 99.2 3.4E-09 1.2E-13 95.3 21.4 278 65-342 12-360 (378)
68 2ond_A Cleavage stimulation fa 99.2 1.4E-08 4.7E-13 88.7 24.3 187 130-342 68-265 (308)
69 4i17_A Hypothetical protein; T 99.2 7.4E-09 2.5E-13 85.9 21.4 151 121-275 9-169 (228)
70 4g1t_A Interferon-induced prot 99.2 2E-08 6.7E-13 92.7 26.2 212 61-288 49-276 (472)
71 4abn_A Tetratricopeptide repea 99.2 4.9E-10 1.7E-14 104.1 14.9 160 121-285 139-318 (474)
72 3edt_B KLC 2, kinesin light ch 99.1 9E-10 3.1E-14 93.9 14.3 167 121-287 45-280 (283)
73 2ooe_A Cleavage stimulation fa 99.1 8.3E-08 2.8E-12 90.3 28.8 281 58-342 41-449 (530)
74 2fo7_A Synthetic consensus TPR 99.1 8E-09 2.7E-13 77.3 17.8 129 121-252 3-131 (136)
75 3ulq_A Response regulator aspa 99.1 2.3E-09 7.9E-14 96.5 16.9 216 69-287 109-367 (383)
76 4a1s_A PINS, partner of inscut 99.1 9.8E-10 3.3E-14 99.6 14.0 225 64-288 87-372 (411)
77 2fo7_A Synthetic consensus TPR 99.1 1.1E-08 3.8E-13 76.4 17.7 131 155-288 2-132 (136)
78 1hz4_A MALT regulatory protein 99.1 5E-08 1.7E-12 87.2 24.9 257 66-342 17-317 (373)
79 3ro2_A PINS homolog, G-protein 99.1 6.6E-10 2.3E-14 97.1 11.9 225 64-288 44-332 (338)
80 3sf4_A G-protein-signaling mod 99.1 8.7E-10 3E-14 99.4 13.0 224 64-287 48-335 (406)
81 4i17_A Hypothetical protein; T 99.0 2.8E-08 9.5E-13 82.4 19.6 185 152-342 5-204 (228)
82 3q15_A PSP28, response regulat 99.0 1.4E-08 4.8E-13 91.2 18.2 216 69-287 107-364 (378)
83 3mv2_B Coatomer subunit epsilo 99.0 2.7E-07 9.2E-12 79.5 24.6 204 74-287 24-239 (310)
84 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.5E-13 86.7 17.3 168 121-288 39-228 (292)
85 1qqe_A Vesicular transport pro 99.0 6.9E-08 2.4E-12 83.5 19.8 204 65-286 39-267 (292)
86 2ooe_A Cleavage stimulation fa 99.0 1.5E-07 5E-12 88.6 23.2 164 121-288 323-492 (530)
87 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.7E-12 81.3 20.6 182 121-310 102-302 (310)
88 3qky_A Outer membrane assembly 98.9 1.3E-07 4.6E-12 80.0 18.5 167 121-288 17-224 (261)
89 3urz_A Uncharacterized protein 98.9 1.3E-07 4.4E-12 77.4 17.5 166 125-300 10-196 (208)
90 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.9E-12 88.9 19.2 153 132-288 2-157 (568)
91 1hz4_A MALT regulatory protein 98.8 4.9E-07 1.7E-11 80.7 21.1 223 65-287 55-321 (373)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.3E-07 1.1E-11 75.9 18.4 164 122-289 7-214 (225)
93 2r5s_A Uncharacterized protein 98.8 8.7E-08 3E-12 76.1 13.4 161 123-287 10-172 (176)
94 3e4b_A ALGK; tetratricopeptide 98.8 2.5E-06 8.4E-11 78.6 23.2 265 65-345 71-385 (452)
95 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.6E-12 92.3 14.6 157 130-293 402-566 (681)
96 3qou_A Protein YBBN; thioredox 98.8 4.2E-07 1.4E-11 78.4 17.0 164 152-342 115-279 (287)
97 3qou_A Protein YBBN; thioredox 98.8 2.5E-07 8.6E-12 79.8 15.4 162 121-286 119-282 (287)
98 3qky_A Outer membrane assembly 98.7 6.4E-07 2.2E-11 75.8 17.6 134 152-288 13-177 (261)
99 3u3w_A Transcriptional activat 98.7 4.3E-07 1.5E-11 78.4 16.7 167 121-287 77-265 (293)
100 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.9E-11 71.5 18.4 128 121-253 8-150 (213)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.4E-11 70.6 18.8 129 156-289 8-151 (213)
102 2r5s_A Uncharacterized protein 98.7 6.2E-07 2.1E-11 71.1 15.4 161 65-251 8-171 (176)
103 3rjv_A Putative SEL1 repeat pr 98.7 5.2E-06 1.8E-10 68.0 21.3 143 136-288 3-158 (212)
104 4ga2_A E3 SUMO-protein ligase 98.7 1E-07 3.5E-12 73.7 10.2 144 126-274 4-149 (150)
105 2qfc_A PLCR protein; TPR, HTH, 98.7 2.5E-06 8.4E-11 73.6 20.2 166 121-286 77-264 (293)
106 3rjv_A Putative SEL1 repeat pr 98.7 3E-06 1E-10 69.4 19.6 161 121-290 20-199 (212)
107 3gw4_A Uncharacterized protein 98.7 3.8E-07 1.3E-11 73.7 13.0 157 130-287 3-175 (203)
108 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.5E-06 5.1E-11 71.9 16.6 167 153-343 3-209 (225)
109 2vsy_A XCC0866; transferase, g 98.6 1.5E-06 5E-11 82.5 18.7 131 121-254 25-158 (568)
110 2pzi_A Probable serine/threoni 98.6 1.7E-07 5.9E-12 90.9 12.3 148 121-274 435-583 (681)
111 1a17_A Serine/threonine protei 98.6 3.2E-06 1.1E-10 65.6 17.3 127 121-250 15-143 (166)
112 1a17_A Serine/threonine protei 98.6 3.4E-06 1.1E-10 65.5 17.1 130 154-286 13-144 (166)
113 4ga2_A E3 SUMO-protein ligase 98.6 4E-07 1.4E-11 70.3 11.2 145 69-239 3-149 (150)
114 3urz_A Uncharacterized protein 98.6 2.1E-06 7.1E-11 70.1 16.1 182 68-265 9-196 (208)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 1E-06 3.4E-11 76.7 14.9 165 121-286 38-222 (307)
116 3e4b_A ALGK; tetratricopeptide 98.6 1.2E-05 4E-10 74.0 22.7 249 65-333 108-389 (452)
117 1na0_A Designed protein CTPR3; 98.6 4.4E-06 1.5E-10 61.1 16.3 96 155-252 10-105 (125)
118 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4E-11 76.3 14.7 202 59-281 32-254 (307)
119 1na0_A Designed protein CTPR3; 98.6 4.2E-06 1.4E-10 61.2 15.7 113 121-236 11-123 (125)
120 3u3w_A Transcriptional activat 98.6 1E-05 3.5E-10 69.7 20.3 166 157-342 78-261 (293)
121 2fbn_A 70 kDa peptidylprolyl i 98.5 1.3E-06 4.6E-11 70.5 12.6 121 121-243 40-175 (198)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 1.5E-05 5.1E-10 68.6 19.9 168 155-342 76-261 (293)
123 2lni_A Stress-induced-phosphop 98.5 4.8E-06 1.6E-10 61.9 14.5 118 153-273 15-132 (133)
124 2vyi_A SGTA protein; chaperone 98.5 5.9E-06 2E-10 61.0 14.6 115 156-273 14-128 (131)
125 4gco_A Protein STI-1; structur 98.5 7.4E-06 2.5E-10 61.0 14.9 96 121-218 15-110 (126)
126 2vyi_A SGTA protein; chaperone 98.5 8.6E-06 2.9E-10 60.0 14.9 117 121-240 14-130 (131)
127 3gyz_A Chaperone protein IPGC; 98.5 1.2E-05 4.1E-10 62.0 15.8 96 121-218 38-133 (151)
128 1p5q_A FKBP52, FK506-binding p 98.4 9.4E-06 3.2E-10 71.5 17.0 94 190-285 197-291 (336)
129 1p5q_A FKBP52, FK506-binding p 98.4 7.1E-06 2.4E-10 72.3 16.2 129 121-251 149-292 (336)
130 2e2e_A Formate-dependent nitri 98.4 2.6E-06 8.7E-11 67.4 12.0 121 130-253 21-144 (177)
131 4gco_A Protein STI-1; structur 98.4 1.3E-05 4.6E-10 59.6 15.3 96 156-253 15-110 (126)
132 3gw4_A Uncharacterized protein 98.4 2.9E-06 9.9E-11 68.3 12.1 132 121-252 28-175 (203)
133 2e2e_A Formate-dependent nitri 98.4 6.3E-06 2.2E-10 65.0 13.6 121 165-288 21-144 (177)
134 2lni_A Stress-induced-phosphop 98.4 8.8E-06 3E-10 60.3 13.7 115 121-238 18-132 (133)
135 3gyz_A Chaperone protein IPGC; 98.4 1.6E-05 5.5E-10 61.3 15.2 97 190-288 37-133 (151)
136 3dra_A Protein farnesyltransfe 98.4 6.8E-05 2.3E-09 64.9 20.2 218 67-287 37-286 (306)
137 2fbn_A 70 kDa peptidylprolyl i 98.4 1.1E-06 3.7E-11 71.1 8.3 160 126-288 11-186 (198)
138 4f3v_A ESX-1 secretion system 98.4 1.7E-05 5.8E-10 67.4 15.5 127 159-288 107-237 (282)
139 4b4t_Q 26S proteasome regulato 98.3 2.2E-05 7.6E-10 71.2 16.9 161 127-287 12-203 (434)
140 2vgx_A Chaperone SYCD; alterna 98.3 4.9E-06 1.7E-10 63.9 10.2 94 156-251 23-116 (148)
141 1elw_A TPR1-domain of HOP; HOP 98.3 5.6E-05 1.9E-09 54.4 15.6 25 226-250 74-98 (118)
142 2vgx_A Chaperone SYCD; alterna 98.3 5.6E-06 1.9E-10 63.6 10.5 96 190-287 22-117 (148)
143 3n71_A Histone lysine methyltr 98.3 7.1E-06 2.4E-10 75.9 12.4 125 127-251 317-462 (490)
144 4gcn_A Protein STI-1; structur 98.3 2.5E-05 8.5E-10 58.2 13.3 104 121-227 10-119 (127)
145 3upv_A Heat shock protein STI1 98.3 4.2E-05 1.4E-09 56.5 14.5 91 158-250 8-98 (126)
146 3upv_A Heat shock protein STI1 98.3 3.6E-05 1.2E-09 56.8 14.1 98 189-288 4-101 (126)
147 1elw_A TPR1-domain of HOP; HOP 98.3 7.7E-05 2.6E-09 53.6 15.5 107 121-230 6-112 (118)
148 2kck_A TPR repeat; tetratricop 98.3 1.7E-05 5.9E-10 56.7 11.8 96 191-288 8-106 (112)
149 3dra_A Protein farnesyltransfe 98.2 0.001 3.5E-08 57.4 24.7 210 129-343 43-283 (306)
150 3n71_A Histone lysine methyltr 98.2 7.1E-06 2.4E-10 75.9 11.7 140 149-288 294-464 (490)
151 2c2l_A CHIP, carboxy terminus 98.2 1.8E-05 6.1E-10 67.8 13.6 96 121-218 6-101 (281)
152 3q49_B STIP1 homology and U bo 98.2 4.8E-05 1.7E-09 56.8 14.5 97 153-251 8-104 (137)
153 3sz7_A HSC70 cochaperone (SGT) 98.2 0.00011 3.8E-09 57.0 17.1 97 154-252 11-107 (164)
154 4gcn_A Protein STI-1; structur 98.2 3.6E-05 1.2E-09 57.3 13.6 95 192-287 11-111 (127)
155 4e6h_A MRNA 3'-END-processing 98.2 8.1E-05 2.8E-09 71.6 19.1 213 89-305 339-585 (679)
156 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.4E-10 58.2 11.6 107 121-230 6-118 (131)
157 3q49_B STIP1 homology and U bo 98.2 6.5E-05 2.2E-09 56.1 14.7 99 187-287 7-105 (137)
158 1elr_A TPR2A-domain of HOP; HO 98.2 1.7E-05 5.9E-10 58.4 11.3 96 156-252 6-107 (131)
159 3ro3_A PINS homolog, G-protein 98.2 1.8E-05 6.2E-10 60.6 11.5 97 191-287 51-157 (164)
160 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.5E-10 62.0 10.0 132 121-252 11-157 (164)
161 2xcb_A PCRH, regulatory protei 98.2 3.8E-05 1.3E-09 58.3 13.0 95 156-252 20-114 (142)
162 2kck_A TPR repeat; tetratricop 98.2 3.9E-05 1.3E-09 54.8 12.2 93 124-218 11-106 (112)
163 2xcb_A PCRH, regulatory protei 98.2 5.2E-05 1.8E-09 57.4 13.1 95 121-217 20-114 (142)
164 2dba_A Smooth muscle cell asso 98.1 0.00014 4.7E-09 54.8 15.3 95 121-218 30-128 (148)
165 2dba_A Smooth muscle cell asso 98.1 0.00015 5.3E-09 54.6 15.2 97 153-252 27-127 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.1 7.7E-05 2.6E-09 57.9 13.6 95 121-217 13-107 (164)
167 2c2l_A CHIP, carboxy terminus 98.1 0.00021 7.2E-09 61.0 17.3 100 152-253 2-101 (281)
168 4f3v_A ESX-1 secretion system 98.1 6.3E-05 2.1E-09 63.9 13.0 184 75-263 18-245 (282)
169 4e6h_A MRNA 3'-END-processing 98.1 0.00022 7.5E-09 68.6 18.3 165 121-288 345-533 (679)
170 1hxi_A PEX5, peroxisome target 98.0 9.1E-05 3.1E-09 54.5 11.4 91 195-287 23-113 (121)
171 2xev_A YBGF; tetratricopeptide 98.0 0.00036 1.2E-08 51.3 14.2 93 125-218 8-105 (129)
172 1hxi_A PEX5, peroxisome target 98.0 0.00014 4.7E-09 53.6 11.6 92 159-252 22-113 (121)
173 3k9i_A BH0479 protein; putativ 98.0 1.7E-05 5.9E-10 58.0 6.6 84 167-251 3-88 (117)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.8E-09 66.9 14.1 122 121-244 270-405 (457)
175 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00022 7.7E-09 65.5 15.4 132 153-286 267-413 (457)
176 1wao_1 Serine/threonine protei 97.9 3.4E-05 1.2E-09 71.4 9.5 121 125-248 12-134 (477)
177 2xev_A YBGF; tetratricopeptide 97.9 0.00053 1.8E-08 50.3 14.4 92 160-253 8-105 (129)
178 3q7a_A Farnesyltransferase alp 97.9 0.0015 5.3E-08 57.2 19.3 219 67-288 58-331 (349)
179 1wao_1 Serine/threonine protei 97.9 3.8E-05 1.3E-09 71.1 9.1 120 161-283 13-134 (477)
180 1ihg_A Cyclophilin 40; ppiase 97.9 0.00023 7.9E-09 63.5 13.6 137 121-279 225-361 (370)
181 4b4t_Q 26S proteasome regulato 97.9 0.00044 1.5E-08 62.6 15.7 207 70-286 11-243 (434)
182 1ihg_A Cyclophilin 40; ppiase 97.8 0.00026 9.1E-09 63.1 13.4 127 156-305 225-352 (370)
183 3k9i_A BH0479 protein; putativ 97.8 3.9E-05 1.3E-09 56.0 6.6 85 132-217 3-89 (117)
184 3rkv_A Putative peptidylprolyl 97.8 0.00044 1.5E-08 53.4 12.5 98 120-218 12-126 (162)
185 1klx_A Cysteine rich protein B 97.8 0.0018 6.1E-08 48.7 15.2 110 169-289 10-127 (138)
186 3rkv_A Putative peptidylprolyl 97.7 0.00049 1.7E-08 53.1 12.2 63 225-288 64-126 (162)
187 3q7a_A Farnesyltransferase alp 97.7 0.019 6.5E-07 50.3 23.0 215 123-342 58-326 (349)
188 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00019 6.5E-09 63.1 9.4 146 121-288 181-328 (338)
189 1klx_A Cysteine rich protein B 97.6 0.00088 3E-08 50.4 11.7 114 131-255 7-128 (138)
190 2uy1_A Cleavage stimulation fa 97.6 0.036 1.2E-06 51.2 24.8 265 64-342 16-378 (493)
191 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00025 8.6E-09 62.4 9.7 114 155-288 180-293 (338)
192 2hr2_A Hypothetical protein; a 97.6 0.0011 3.8E-08 50.9 11.6 62 121-182 13-85 (159)
193 2l6j_A TPR repeat-containing p 97.5 0.00054 1.8E-08 48.7 9.1 65 223-288 3-67 (111)
194 2hr2_A Hypothetical protein; a 97.5 0.0022 7.5E-08 49.3 12.5 62 156-217 13-85 (159)
195 1dce_A Protein (RAB geranylger 97.4 0.022 7.4E-07 53.7 20.9 178 130-336 40-244 (567)
196 2l6j_A TPR repeat-containing p 97.4 0.00087 3E-08 47.6 8.6 64 189-253 4-67 (111)
197 3qww_A SET and MYND domain-con 97.4 0.00061 2.1E-08 61.9 9.1 87 201-287 310-410 (433)
198 3qwp_A SET and MYND domain-con 97.4 0.00088 3E-08 60.9 10.0 90 197-286 295-398 (429)
199 3qww_A SET and MYND domain-con 97.3 0.00046 1.6E-08 62.7 7.9 87 166-252 310-410 (433)
200 3qwp_A SET and MYND domain-con 97.3 0.0012 4.1E-08 60.0 10.5 97 156-252 289-399 (429)
201 2kat_A Uncharacterized protein 97.3 0.002 6.8E-08 46.4 9.7 63 223-286 18-80 (115)
202 1na3_A Designed protein CTPR2; 97.3 0.0061 2.1E-07 41.2 11.5 61 156-217 11-71 (91)
203 1na3_A Designed protein CTPR2; 97.3 0.0054 1.9E-07 41.5 11.1 80 190-271 10-89 (91)
204 3dss_A Geranylgeranyl transfer 97.2 0.084 2.9E-06 45.9 21.9 176 74-252 40-266 (331)
205 3dss_A Geranylgeranyl transfer 97.2 0.09 3.1E-06 45.7 21.1 150 135-288 90-267 (331)
206 2kat_A Uncharacterized protein 97.2 0.0029 9.9E-08 45.5 9.6 77 138-216 4-80 (115)
207 3ma5_A Tetratricopeptide repea 97.0 0.0056 1.9E-07 42.9 9.0 63 188-251 6-68 (100)
208 1dce_A Protein (RAB geranylger 97.0 0.025 8.4E-07 53.3 15.8 139 135-277 89-244 (567)
209 3ma5_A Tetratricopeptide repea 97.0 0.0062 2.1E-07 42.6 9.1 64 153-217 6-69 (100)
210 3ly7_A Transcriptional activat 96.9 0.073 2.5E-06 46.7 17.4 172 56-252 157-338 (372)
211 3mkq_A Coatomer beta'-subunit; 96.8 0.038 1.3E-06 54.1 16.9 98 72-180 608-707 (814)
212 1zu2_A Mitochondrial import re 96.7 0.0049 1.7E-07 47.2 7.0 37 167-204 15-51 (158)
213 1zu2_A Mitochondrial import re 96.6 0.0052 1.8E-07 47.1 7.0 41 130-171 13-53 (158)
214 2uy1_A Cleavage stimulation fa 96.6 0.19 6.4E-06 46.4 18.5 152 121-285 215-380 (493)
215 3mkq_A Coatomer beta'-subunit; 96.5 0.032 1.1E-06 54.6 13.6 131 123-286 633-763 (814)
216 3ly7_A Transcriptional activat 96.3 0.24 8.3E-06 43.4 16.3 144 150-298 190-347 (372)
217 2kc7_A BFR218_protein; tetratr 96.2 0.019 6.4E-07 39.6 7.3 57 126-183 7-64 (99)
218 3mkq_B Coatomer subunit alpha; 96.1 0.3 1E-05 37.9 14.2 102 128-250 14-115 (177)
219 2kc7_A BFR218_protein; tetratr 96.1 0.02 6.7E-07 39.5 7.1 53 199-252 10-63 (99)
220 1wy6_A Hypothetical protein ST 96.0 0.31 1.1E-05 35.9 13.6 139 131-291 19-157 (172)
221 2v5f_A Prolyl 4-hydroxylase su 95.3 0.17 5.7E-06 35.5 9.3 66 153-218 4-75 (104)
222 3bee_A Putative YFRE protein; 95.0 0.23 7.7E-06 34.1 9.1 65 188-253 5-72 (93)
223 1pc2_A Mitochondria fission pr 94.9 0.41 1.4E-05 36.2 10.8 64 223-287 31-99 (152)
224 3u64_A Protein TP_0956; tetrat 94.8 0.33 1.1E-05 41.0 11.1 94 135-230 179-283 (301)
225 3mkq_B Coatomer subunit alpha; 94.7 1.1 3.9E-05 34.7 15.3 103 162-285 13-115 (177)
226 2v5f_A Prolyl 4-hydroxylase su 94.6 0.28 9.5E-06 34.3 9.0 65 223-287 4-74 (104)
227 1pc2_A Mitochondria fission pr 94.3 0.91 3.1E-05 34.3 11.4 79 173-253 17-100 (152)
228 3bee_A Putative YFRE protein; 94.2 0.85 2.9E-05 31.1 11.3 67 221-288 3-72 (93)
229 3u64_A Protein TP_0956; tetrat 93.9 0.65 2.2E-05 39.2 10.8 95 205-301 179-284 (301)
230 1wy6_A Hypothetical protein ST 93.3 1.1 3.8E-05 33.0 9.7 66 154-220 91-156 (172)
231 2ff4_A Probable regulatory pro 92.9 0.55 1.9E-05 41.7 9.7 127 153-298 111-249 (388)
232 4h7y_A Dual specificity protei 92.2 2.8 9.7E-05 31.5 11.0 101 153-255 12-125 (161)
233 2ff4_A Probable regulatory pro 91.9 1 3.4E-05 40.0 10.0 71 191-262 173-248 (388)
234 4gns_B Protein CSD3, chitin bi 91.2 1.2 4E-05 43.1 10.1 52 268-344 346-397 (754)
235 1nzn_A CGI-135 protein, fissio 91.1 1.5 5.1E-05 31.9 8.4 23 230-252 80-102 (126)
236 1nzn_A CGI-135 protein, fissio 90.7 1.9 6.6E-05 31.3 8.6 82 205-288 17-103 (126)
237 4gns_B Protein CSD3, chitin bi 90.2 4.2 0.00014 39.4 13.0 126 123-251 252-398 (754)
238 4b4t_P 26S proteasome regulato 89.2 12 0.00042 33.7 19.1 228 112-341 49-318 (445)
239 1v54_E Cytochrome C oxidase po 88.7 2.1 7.3E-05 29.6 6.9 33 253-285 39-71 (109)
240 1v54_E Cytochrome C oxidase po 87.9 5.1 0.00018 27.7 8.7 62 134-196 25-86 (109)
241 4fhn_B Nucleoporin NUP120; pro 87.1 15 0.00051 37.6 15.4 144 125-275 818-987 (1139)
242 4h7y_A Dual specificity protei 87.0 4.6 0.00016 30.4 8.5 104 188-293 12-128 (161)
243 3eiq_C Programmed cell death p 86.9 15 0.00051 32.0 14.3 112 225-337 218-331 (358)
244 1zbp_A Hypothetical protein VP 85.2 14 0.00047 30.7 11.4 110 232-342 5-124 (273)
245 2p58_C Putative type III secre 85.1 7.4 0.00025 26.8 8.3 78 204-289 22-99 (116)
246 2zu6_B Programmed cell death p 84.9 14 0.00048 31.4 11.8 111 226-337 168-280 (307)
247 4b4t_R RPN7, 26S proteasome re 84.5 11 0.00039 33.7 11.8 96 121-218 133-237 (429)
248 2uwj_G Type III export protein 84.1 6.9 0.00024 26.9 7.5 78 204-289 21-98 (115)
249 2y69_E Cytochrome C oxidase su 83.4 11 0.00036 27.7 8.7 68 129-197 62-130 (152)
250 2y69_E Cytochrome C oxidase su 83.3 5 0.00017 29.4 6.9 33 218-250 82-114 (152)
251 3lvg_A Clathrin heavy chain 1; 82.8 0.023 7.8E-07 51.5 -6.5 206 65-278 85-323 (624)
252 3lpz_A GET4 (YOR164C homolog); 82.5 23 0.00078 30.5 18.9 117 116-247 32-159 (336)
253 2p58_C Putative type III secre 81.8 9.1 0.00031 26.4 7.4 78 134-219 22-99 (116)
254 2uwj_G Type III export protein 80.9 8.4 0.00029 26.5 7.0 79 133-219 20-98 (115)
255 2ion_A PDCD4, programmed cell 79.1 18 0.00061 27.1 10.1 109 226-335 11-121 (152)
256 4b4t_P 26S proteasome regulato 79.0 36 0.0012 30.6 19.8 232 55-286 48-322 (445)
257 3o48_A Mitochondria fission 1 76.8 19 0.00066 26.2 10.0 66 187-252 38-106 (134)
258 4b4t_R RPN7, 26S proteasome re 76.0 22 0.00075 31.8 10.7 95 156-252 133-236 (429)
259 3lvg_A Clathrin heavy chain 1; 75.0 6.8E-05 2.3E-09 67.5 -25.0 205 59-305 50-274 (624)
260 2nsz_A Programmed cell death p 74.5 22 0.00074 25.7 11.4 110 226-336 9-120 (129)
261 4fhn_B Nucleoporin NUP120; pro 71.6 29 0.00098 35.5 11.4 160 124-286 847-1048(1139)
262 3txn_A 26S proteasome regulato 71.0 55 0.0019 28.9 17.0 166 121-286 21-208 (394)
263 3ffl_A Anaphase-promoting comp 68.3 37 0.0013 25.8 10.3 57 126-182 27-91 (167)
264 3ffl_A Anaphase-promoting comp 67.9 38 0.0013 25.8 8.6 70 148-217 12-91 (167)
265 2wpv_A GET4, UPF0363 protein Y 66.2 61 0.0021 27.5 19.8 117 116-247 30-157 (312)
266 2d2s_A Exocyst complex compone 64.4 55 0.0019 26.4 10.6 92 122-216 21-118 (235)
267 1qsa_A Protein (soluble lytic 63.6 1E+02 0.0034 29.1 21.5 111 204-342 229-343 (618)
268 1y8m_A FIS1; mitochondria, unk 63.3 43 0.0015 24.7 12.1 66 187-252 37-105 (144)
269 1zbp_A Hypothetical protein VP 61.3 28 0.00096 28.9 7.2 116 162-288 5-129 (273)
270 3o48_A Mitochondria fission 1 60.6 46 0.0016 24.2 10.0 71 221-293 37-110 (134)
271 2d2s_A Exocyst complex compone 59.6 42 0.0015 27.1 8.1 89 159-250 23-117 (235)
272 1wdy_A 2-5A-dependent ribonucl 58.3 3.5 0.00012 33.9 1.4 23 67-89 6-28 (285)
273 2fe3_A Peroxide operon regulat 56.6 52 0.0018 24.1 7.6 37 201-237 33-69 (145)
274 3esl_A Checkpoint serine/threo 56.3 72 0.0024 25.1 10.3 55 238-292 93-148 (202)
275 3txn_A 26S proteasome regulato 55.9 1.1E+02 0.0037 27.0 25.0 226 65-296 21-291 (394)
276 2r9g_A AAA ATPase, central reg 54.9 75 0.0026 24.9 8.9 77 131-208 26-107 (204)
277 1y8m_A FIS1; mitochondria, unk 52.7 67 0.0023 23.7 12.2 73 149-223 34-109 (144)
278 2xig_A Ferric uptake regulatio 52.3 53 0.0018 24.3 7.1 58 180-238 18-75 (150)
279 1mzb_A Ferric uptake regulatio 51.9 55 0.0019 23.6 7.0 58 180-238 9-67 (136)
280 1k1a_A B-cell lymphoma 3-encod 51.7 20 0.00068 28.4 5.0 149 125-282 12-170 (241)
281 1k1a_A B-cell lymphoma 3-encod 50.5 15 0.00052 29.1 4.1 173 160-341 12-203 (241)
282 3bge_A Predicted ATPase; struc 49.4 79 0.0027 24.7 7.6 55 131-185 19-78 (201)
283 3lpz_A GET4 (YOR164C homolog); 48.9 1.3E+02 0.0044 25.8 19.6 140 128-286 64-214 (336)
284 2fu4_A Ferric uptake regulatio 48.0 52 0.0018 21.1 6.5 58 215-273 8-66 (83)
285 2wpv_A GET4, UPF0363 protein Y 47.9 1.3E+02 0.0044 25.5 19.5 141 127-286 61-215 (312)
286 4ets_A Ferric uptake regulatio 47.6 73 0.0025 23.9 7.2 59 180-239 24-84 (162)
287 2rg8_A Programmed cell death p 44.9 90 0.0031 23.6 7.3 24 193-216 14-37 (165)
288 2w57_A Ferric uptake regulatio 43.6 65 0.0022 23.8 6.3 21 206-226 34-54 (150)
289 3ctd_A Putative ATPase, AAA fa 43.6 1.2E+02 0.0041 24.0 8.4 72 131-202 47-123 (213)
290 3eyy_A Putative iron uptake re 43.5 50 0.0017 24.3 5.6 13 207-219 35-47 (145)
291 4b4t_S RPN3, 26S proteasome re 42.9 2E+02 0.0069 26.4 12.7 65 224-288 231-299 (523)
292 2fe3_A Peroxide operon regulat 42.8 96 0.0033 22.6 7.3 60 214-274 12-71 (145)
293 3t8k_A Uncharacterized protein 41.5 43 0.0015 25.6 5.3 159 129-291 13-183 (186)
294 1mzb_A Ferric uptake regulatio 41.2 90 0.0031 22.5 6.7 58 215-273 9-67 (136)
295 2fu4_A Ferric uptake regulatio 40.4 71 0.0024 20.4 6.2 58 180-238 8-66 (83)
296 3ygs_P Procaspase 9; apoptosis 39.9 82 0.0028 21.3 5.8 32 170-205 53-84 (97)
297 1ug3_A EIF4GI, eukaryotic prot 38.3 32 0.0011 29.6 4.4 23 193-215 15-37 (339)
298 2w57_A Ferric uptake regulatio 37.0 1E+02 0.0035 22.7 6.5 61 213-274 6-67 (150)
299 3eyy_A Putative iron uptake re 36.7 86 0.003 22.9 6.0 58 214-273 9-66 (145)
300 4b4t_S RPN3, 26S proteasome re 35.8 2.3E+02 0.008 25.9 9.7 65 154-218 231-299 (523)
301 3mv2_A Coatomer subunit alpha; 35.1 2.1E+02 0.0072 24.3 8.8 107 74-185 125-238 (325)
302 2keb_A DNA polymerase subunit 35.0 1.1E+02 0.0036 20.9 6.8 31 208-238 28-58 (101)
303 2yru_A Steroid receptor RNA ac 34.8 1.2E+02 0.0041 21.4 8.3 42 246-287 48-89 (118)
304 3c1d_A Protein ORAA, regulator 34.3 1.4E+02 0.0049 22.2 11.7 50 170-221 46-95 (159)
305 1ug3_A EIF4GI, eukaryotic prot 33.8 1.1E+02 0.0039 26.1 7.1 65 121-187 13-79 (339)
306 2xig_A Ferric uptake regulatio 33.7 1.4E+02 0.0048 21.9 7.6 62 143-205 16-77 (150)
307 4a1g_A Mitotic checkpoint seri 33.6 1.5E+02 0.005 22.1 10.1 50 243-292 84-134 (152)
308 3mwm_A ZUR, putative metal upt 33.5 60 0.0021 23.6 4.6 45 125-169 19-63 (139)
309 2yru_A Steroid receptor RNA ac 32.3 1E+02 0.0036 21.8 5.5 44 140-183 47-90 (118)
310 4ets_A Ferric uptake regulatio 32.0 1.4E+02 0.0049 22.2 6.7 68 206-274 14-84 (162)
311 2b7e_A PRE-mRNA processing pro 31.9 24 0.00083 21.5 1.7 29 206-234 3-31 (59)
312 2o03_A Probable zinc uptake re 31.6 67 0.0023 23.0 4.6 44 125-168 16-59 (131)
313 4aez_C MAD3, mitotic spindle c 31.6 1.1E+02 0.0037 24.5 6.1 52 171-222 131-183 (223)
314 3f3f_C Nucleoporin NUP85; stru 31.6 2E+02 0.0068 26.7 8.5 71 136-208 498-568 (570)
315 3hra_A Ankyrin repeat family p 31.1 54 0.0018 24.9 4.3 160 127-293 10-172 (201)
316 3pvs_A Replication-associated 31.0 2.9E+02 0.0098 24.6 12.5 31 150-182 190-220 (447)
317 1wdy_A 2-5A-dependent ribonucl 30.8 23 0.00077 28.8 2.1 17 125-141 8-24 (285)
318 3aji_A 26S proteasome non-ATPa 30.7 31 0.001 27.1 2.9 51 126-177 10-60 (231)
319 4ady_A RPN2, 26S proteasome re 29.5 4.4E+02 0.015 26.3 16.5 51 201-252 536-588 (963)
320 4ady_A RPN2, 26S proteasome re 29.1 4.5E+02 0.015 26.3 15.4 137 125-269 530-671 (963)
321 4fke_A Aminopeptidase N; zinc 28.6 4.4E+02 0.015 26.1 21.6 92 157-253 689-787 (909)
322 2keb_A DNA polymerase subunit 28.5 1.4E+02 0.0048 20.3 7.0 56 137-194 27-87 (101)
323 3l6a_A Eukaryotic translation 27.8 3E+02 0.01 23.8 9.1 64 121-188 14-82 (364)
324 3jxi_A Vanilloid receptor-rela 27.0 82 0.0028 25.1 4.9 55 161-215 9-72 (260)
325 3e3v_A Regulatory protein RECX 26.8 2.1E+02 0.0071 21.7 10.1 50 171-221 50-99 (177)
326 2wvi_A Mitotic checkpoint seri 26.6 2.1E+02 0.0071 21.6 10.0 51 243-293 79-130 (164)
327 2p1h_A APAF-1, apoptotic prote 26.4 1.4E+02 0.0049 19.7 6.3 33 203-239 50-82 (94)
328 4g8k_A 2-5A-dependent ribonucl 26.3 1.1E+02 0.0038 25.5 5.9 14 198-211 245-258 (337)
329 3mwm_A ZUR, putative metal upt 26.2 82 0.0028 22.8 4.3 30 197-226 21-50 (139)
330 2o03_A Probable zinc uptake re 26.2 92 0.0031 22.2 4.5 14 205-218 26-39 (131)
331 2ion_A PDCD4, programmed cell 26.0 2E+02 0.0068 21.2 8.7 25 122-146 12-36 (152)
332 3esl_A Checkpoint serine/threo 24.1 2.6E+02 0.0089 21.9 11.0 66 121-187 82-148 (202)
333 3t8k_A Uncharacterized protein 24.0 2.3E+02 0.0079 21.3 7.1 127 163-293 12-148 (186)
334 4fke_A Aminopeptidase N; zinc 23.1 5.5E+02 0.019 25.3 13.6 158 124-288 691-860 (909)
335 3rjo_A Endoplasmic reticulum a 23.0 3.8E+02 0.013 23.4 22.6 92 156-254 199-297 (419)
336 2ijq_A Hypothetical protein; s 22.0 2.5E+02 0.0087 21.0 8.3 61 121-182 35-103 (161)
337 4a1g_A Mitotic checkpoint seri 21.6 2.5E+02 0.0086 20.8 9.4 50 173-222 84-134 (152)
338 3l6a_A Eukaryotic translation 21.4 4E+02 0.014 23.0 11.8 24 193-216 16-39 (364)
339 3twr_A Tankyrase-2; ankyrin re 21.3 75 0.0026 23.1 3.3 13 129-141 15-27 (165)
340 2etb_A Transient receptor pote 21.1 56 0.0019 26.1 2.8 27 161-187 6-32 (256)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.4e-35 Score=274.13 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=180.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL---------LEKAEAVFREMRKYGLPPSAVV 191 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~~ 191 (352)
.++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5788899999999999999999999999999999999999999998765 6889999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
|+++|.+|++.|++++|.++|++|.+.|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
.|++++|.+++++|++.|..|+..||+.++..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-33 Score=262.43 Aligned_cols=197 Identities=16% Similarity=0.232 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---------H
Q 045379 136 KKAEFTYLELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN---------P 205 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 205 (352)
..+..+.+++.+.+..+++. .++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 44566667777777766654 6899999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHH----------HHHHH-hcCCCCCHHHHHHHHHHHHHcC
Q 045379 286 QGAGIEPDVYAYNALMEAYR----------LISRM-HMGCEPDRASYNIMVDAYGRAG 332 (352)
Q Consensus 286 ~~~~~~p~~~~~~~li~a~~----------~~~~m-~~~~~p~~~~~~~li~a~~~~g 332 (352)
.+.|+.||..||++||.+|+ ++++| +.+..|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999998 99999 9999999999999999998754
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.5e-24 Score=204.20 Aligned_cols=273 Identities=11% Similarity=0.007 Sum_probs=240.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCC
Q 045379 66 AQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSL 134 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~ 134 (352)
++.++..|.+.|++++|.++|+++. ++..+|+.++.++.+.|+.+.+..++..+. +|+.++.+|.+.|+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 4455778889999999999999885 689999999999999999888877776654 89999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
+++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998643 3578899999999999999999999999998753 45688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 045379 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA----GI 290 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~----~~ 290 (352)
+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 98864 4578999999999999999999999999998753 457899999999999999999999999999876 77
Q ss_pred CCC--HHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 291 EPD--VYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 291 ~p~--~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.|+ ..+|..+..+|. .++++....+.+..+|..+..+|.+.|++++|.++|.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888 789999998887 7777722225689999999999999999999999986
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=9.4e-23 Score=195.01 Aligned_cols=188 Identities=11% Similarity=0.001 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------------------------------CCCCHHHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG---------------------------------LPPSAVVYNSYIDG 198 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------------~~~~~~~~~~li~~ 198 (352)
++..+++.++.+|.+.|++++|.++|+++.+.+ .+.+..+++.++.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 455566666666666666666666666665432 23456777778888
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3357788888888888888888888888887653 34677788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHH-hc----CCCCC--HHHHHHHHHHHHHcCCcchhHHHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRM-HM----GCEPD--RASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m-~~----~~~p~--~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
.++|+++.+.. ..+..+|+.+...|. +|+++ .. +..|+ ..+|..++.+|.+.|++++|.++|
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888887643 236777777777665 66666 32 56776 778888888888888888888887
Q ss_pred H
Q 045379 342 L 342 (352)
Q Consensus 342 ~ 342 (352)
.
T Consensus 540 ~ 540 (597)
T 2xpi_A 540 N 540 (597)
T ss_dssp H
T ss_pred H
Confidence 6
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=2.2e-18 Score=156.04 Aligned_cols=280 Identities=13% Similarity=0.043 Sum_probs=235.2
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLI 126 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li 126 (352)
.|.....+..+...|.+.|++++|...|+++ |.+...|..+..++...|+.+.+...+.... .+..+.
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4555668899999999999999999998865 3456689999999998888877766665543 778888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
..+...|++++|.+.|.++.+... -+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999987542 357799999999999999999999999998864 456788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|...|++..+.. +.+..++..+..+|.+.|++++|++.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.
T Consensus 221 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988763 3368899999999999999999999999998864 3357789999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHH
Q 045379 287 GAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLV 343 (352)
Q Consensus 287 ~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~ 343 (352)
+.. ..+..+++.+...+. .++++....+.+..++..+..+|.+.|++++|.+.|..
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 763 456788888877665 66666444566789999999999999999999999863
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=185.84 Aligned_cols=148 Identities=13% Similarity=0.179 Sum_probs=128.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD---SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 197 (352)
+||+||++|++.|++++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||++|+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999999988764 58999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH
Q 045379 198 GLLKGGN-PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN------ICTYTALVNAFA 270 (352)
Q Consensus 198 ~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~t~~~li~~~~ 270 (352)
++++.|+ .++|.++|++|.+.|+.||..+|+.+++++.+. .+++..+++ ..+.+|+ ..+...|.+.|.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHHc
Confidence 9999998 478999999999999999999999999877764 444444444 3344444 445566677777
Q ss_pred hcC
Q 045379 271 REG 273 (352)
Q Consensus 271 ~~g 273 (352)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=186.71 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRK---YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 555555555555555555555555432 24555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 233 LYGKASKS-FMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 233 ~~~~~g~~-~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.++
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555542 44555555555555555555555555443
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=1.9e-17 Score=149.80 Aligned_cols=281 Identities=15% Similarity=0.002 Sum_probs=233.9
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLI 126 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li 126 (352)
.|........+...+...|++++|...++.. |.+...|..+..++...|+.+.+...+.... +|..+.
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 108 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 3445557788888899999999998888653 4678899999999999998877777665543 799999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
.++.+.|++++|.+.|.++.+... .+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...|.+.|+++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999987542 245577788888999999999999999998763 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+|...|+++.+.+ +.+...+..+...+...|++++|+..|++..... +.+..++..+...|.+.|++++|.+.|+++.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 4467889999999999999999999999987653 3357889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 045379 287 GAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 287 ~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~ 344 (352)
+.. ..+..++..+..++. .++.+....+.+..++..+...+.+.|++++|.++|...
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 763 224567777776665 667763345778999999999999999999999998633
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=1.2e-17 Score=153.83 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=225.9
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLI 126 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li 126 (352)
.|.....+..+...|.+.|++++|...|+++ |.+...|..+..++...|+.+.+...+.... +|..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3444557789999999999999999999865 4678899999999999988877776665543 899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPT-E---DTYALL------------LKAYCMSGLLEKAEAVFREMRKYGLPPSAV 190 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 190 (352)
..|.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+...|++++|...++++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99999999999999999999854 44 3 555555 444889999999999999998763 45788
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTAL----- 265 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l----- 265 (352)
++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 99999999999999999999999998763 4578999999999999999999999999998652 2344445444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHH
Q 045379 266 -------VNAFAREGLCEEAEEIFEQLQGAGIEPD-----VYAYNALMEAYR----------LISRMHMGCEPDRASYNI 323 (352)
Q Consensus 266 -------i~~~~~~g~~~~a~~l~~~m~~~~~~p~-----~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~ 323 (352)
...|.+.|++++|...|+++.+. .|+ ...+..+..++. .++.+....+.+...|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78999999999999999999874 454 345555655554 555552223557899999
Q ss_pred HHHHHHHcCCcchhHHHHH
Q 045379 324 MVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 324 li~a~~~~g~~~~A~~~~~ 342 (352)
+..+|...|++++|.+.|.
T Consensus 335 l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999986
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.9e-15 Score=130.87 Aligned_cols=225 Identities=8% Similarity=-0.113 Sum_probs=176.1
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHH
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEA 128 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~ 128 (352)
....+...++..+...|++++|..+|+++ |.+...+..++.++...++.+.+...+.... +|..+...
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34457788888999999999999988875 3566677777777777777666555554433 78888888
Q ss_pred HHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 129 YGQKS-LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 129 ~~~~g-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
+...| ++++|.+.|++..+... .+...|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 88888 89999999988887543 356678888888999999999999998887764 3345667778888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK--------CKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
|...+++..+.. +.+..++..+...+...|++++|...+++..+.. .+.+..++..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999888764 4467888888899999999999999988876531 1334568888888899999999999
Q ss_pred HHHHHHHHC
Q 045379 280 EIFEQLQGA 288 (352)
Q Consensus 280 ~l~~~m~~~ 288 (352)
..+++..+.
T Consensus 257 ~~~~~a~~~ 265 (330)
T 3hym_B 257 DYHRQALVL 265 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999888764
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.71 E-value=5.2e-14 Score=124.92 Aligned_cols=271 Identities=12% Similarity=0.088 Sum_probs=215.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHcc
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQK 132 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~ 132 (352)
.+..+...+...|++++|...|++. |.+...|..+..++...|+.+.+...+.... +|..+...+.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 5567888889999999999998765 4577889889999988888777666665443 899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIP----TEDTYALL------------LKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
|++++|.+.|++..+.. | +...+..+ ...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 85 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 99999999999998754 4 33444444 578889999999999999998763 45778899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------H
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT------------A 264 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~------------~ 264 (352)
..+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 4578899999999999999999999999988753 22333333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH----HHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHH
Q 045379 265 LVNAFAREGLCEEAEEIFEQLQGAGIEPD-VYA----YNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYG 329 (352)
Q Consensus 265 li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~----~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~ 329 (352)
+...+.+.|++++|...++++.+.. |+ ... +..+..++. .++......+.+...+..+...|.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3667899999999999999998753 33 222 222223332 555552223558899999999999
Q ss_pred HcCCcchhHHHHH
Q 045379 330 RAGLHEGKCSYSL 342 (352)
Q Consensus 330 ~~g~~~~A~~~~~ 342 (352)
+.|++++|.+.|.
T Consensus 318 ~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 318 IEEMYDEAIQDYE 330 (359)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 9999999999986
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=3.3e-15 Score=133.66 Aligned_cols=263 Identities=13% Similarity=0.015 Sum_probs=171.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYG 130 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~ 130 (352)
...+..+...|.+.|++++|...|++. |.+...|..+..++...|+.+.+...+.... +|..+...|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 446678889999999999999888765 3466677777777776666655555444332 6677777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYAL---------------LLKAYCMSGLLEKAEAVFREMRKYGLP-PSAVVYNS 194 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ 194 (352)
..|++++|.+.|+++.+.... +...+.. .+..+...|++++|...++++.+..-. ++..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 777777777777777664422 1111111 233333667777777777777664321 14667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+...|.+.|++++|...|++..+.. +.+..++..+...+...|++++|+..|++..+.. +.+..++..+...|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 7777777777777777777766652 3356677777777777777777777777766542 3345667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 275 CEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 275 ~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+++|...|+++.+.. |+.. .......+....+|..+..+|...|+.++|..++.
T Consensus 301 ~~~A~~~~~~al~~~--~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 301 HREAVEHFLEALNMQ--RKSR------------GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHH--HTC------------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHHhC--CCCC------------CccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 777777777765421 1000 00000012247889999999999999999999875
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=1.5e-14 Score=133.03 Aligned_cols=261 Identities=10% Similarity=-0.029 Sum_probs=202.1
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHh-----------HHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMS-----------CVSI 123 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~ 123 (352)
.|.....+..+...|...|++++|...|+++ |.+...|..+..++...|+.+.+...+... .+|.
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 3444567889999999999999999988865 356788899999998888877766665544 2444
Q ss_pred HH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 124 LL------------IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVV 191 (352)
Q Consensus 124 ~l------------i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 191 (352)
.+ ...+.+.|++++|.+.|+++.+... .+..++..+..++...|++++|.+.|+++.+.. +.+..+
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44 4458899999999999999987543 477889999999999999999999999988753 456789
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM------------INLYGKASKSFMALKLFNEMRSHKCKPN- 258 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~~g~~p~- 258 (352)
+..+...|...|++++|...|+++.+.. +.+...+..+ ...|...|++++|...|+++.+. .|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~ 290 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSI 290 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcc
Confidence 9999999999999999999999998763 3345555554 78899999999999999999874 344
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHH
Q 045379 259 ----ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIM 324 (352)
Q Consensus 259 ----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~l 324 (352)
...+..+...+.+.|++++|...++++.+.. ..+...+..+..+|. .++....-.+-+...+..+
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4478888999999999999999999987652 235677877777776 5555522223356666666
Q ss_pred H
Q 045379 325 V 325 (352)
Q Consensus 325 i 325 (352)
.
T Consensus 370 ~ 370 (450)
T 2y4t_A 370 E 370 (450)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2.1e-15 Score=135.11 Aligned_cols=267 Identities=11% Similarity=-0.043 Sum_probs=150.3
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHH
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEA 128 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~ 128 (352)
.....+..+...+.+.|++++|...|++. |.+...|..+..++...|+.+.+...+.... +|..+...
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 33446788899999999999999999865 3456666666666666555554444443322 56666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCI---------PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-PSAVVYNSYIDG 198 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 198 (352)
|.+.|++++|.+.|+++.+.... .....+..+...+...|++++|...++++.+..-. ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 66666666666666666542210 01122233455555666666666666666554211 145566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
|...|++++|...|++..+.. +.+..+|+.+..+|...|++++|+..|++..+.. +.+..++..+...|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655542 2345566666666666666666666666655432 22355566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
...|+++.+.. |+...-. -......+...|..+..++...|+.+.+.+...
T Consensus 301 ~~~~~~al~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 301 VSNFLTALSLQ--RKSRNQQ-----------QVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHH--HCC-----------------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHhC--cccCCCc-----------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666654321 0000000 000001246789999999999999999988864
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.2e-14 Score=127.55 Aligned_cols=262 Identities=9% Similarity=-0.028 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHc
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQ 131 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~ 131 (352)
..+..+...+...|++++|...|+++ |.+...|..+..++...++.+.+...+.... +|..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 35667888899999999999999875 3455566666666665555544444433322 55666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALL--------------LK-AYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
.|++++|.+.+++..+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666666654321 11111111 11 2445566666666666665542 23456666666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
..|...|++++|...+++..+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 66666666666666666665542 2345566666666666666666666666665432 234556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 277 ~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+|.+.++++.+.........- ......+...+..+..++.+.|+.++|.+++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTG-------------EASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccc-------------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666665532100000000 00001147788999999999999999999875
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.3e-15 Score=136.55 Aligned_cols=274 Identities=12% Similarity=0.013 Sum_probs=218.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccC
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKS 133 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g 133 (352)
.+..+...+.+.|++++|...|+++. |+...|..+..++...|+.+.+...+.... +|..+..++.+.|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999998764 788999999999999998877777666544 8999999999999
Q ss_pred CHHHHHHHHHHHHhCCCC--------------------------------------------------------------
Q 045379 134 LHKKAEFTYLELLDSRCI-------------------------------------------------------------- 151 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~-------------------------------------------------------------- 151 (352)
++++|.+.|+++.+.+..
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998765421
Q ss_pred ---------------C-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHH
Q 045379 152 ---------------P-TEDTYALLLKAYCM---SGLLEKAEAVFREMRK-----YGL--------PPSAVVYNSYIDGL 199 (352)
Q Consensus 152 ---------------p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~ 199 (352)
| +...+......+.. .|++++|...++++.+ ..- +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 0 13333333343443 8999999999999987 311 22356788899999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
...|++++|...|++..+.. |+..++..+...|...|++++|...+++..... +.+...+..+...|...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998874 448889999999999999999999999998764 446778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..++++.+.... +...+..+...+. .++.+....+.+...+..+...|.+.|++++|.+.|.
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 325 KDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999876422 3455555554443 6666622334567889999999999999999999986
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=2.9e-16 Score=141.11 Aligned_cols=217 Identities=9% Similarity=0.007 Sum_probs=56.0
Q ss_pred HhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 045379 74 QREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC---VSILLIEAYGQKSLHKKAEFTYLELLDSRC 150 (352)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 150 (352)
.+.|++++|.+.+++++ ++.+|..+..++.+.++.+.+.+.+.... +|..++.++...|++++|.+.++..++.
T Consensus 14 ~~~~~ld~A~~fae~~~-~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-- 90 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 47788999999999884 33466555555555444444444333222 4444444444445555555444333331
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 151 IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 151 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 2334444444455555555544444442 133344455555555555555555555443 134445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM 310 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m 310 (352)
..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l--------------------------- 201 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL--------------------------- 201 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT---------------------------
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH---------------------------
Confidence 55555555555555544444 144445555555555555544422211
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 045379 311 HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 311 ~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~ 344 (352)
.+..++.....++..|.+.|++++|..+|...
T Consensus 202 --~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 202 --HIVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp --TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12234444556788888888888888887633
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=2.4e-15 Score=135.22 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH-------HHHHHHHHHHccCCHH
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC-------VSILLIEAYGQKSLHK 136 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~ 136 (352)
.++..|+.++.+.|++++|++.|.+. +|...|..+++++...|+.+.+...+.... +.+.++.+|.+.|+++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence 38889999999999999999999876 677799999999999998888777665443 6888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.+..
T Consensus 112 e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 112 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp HHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 9998884 278889999999999999999999999986 489999999999999999999999982
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYA 296 (352)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 296 (352)
++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|..+++...... .-....
T Consensus 176 ------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ 243 (449)
T 1b89_A 176 ------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 243 (449)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHH
T ss_pred ------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHH
Confidence 799999999999999999999665554 23344556679999999999999999999988554 556677
Q ss_pred HHHHHHHHH------HHHHH-----hcCCCC------CHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 297 YNALMEAYR------LISRM-----HMGCEP------DRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 297 ~~~li~a~~------~~~~m-----~~~~~p------~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
|+-+-.+|+ +.+.+ .-+++| +...|..++-.|.+.|+++.|.....
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 777777776 22222 222333 45668888899999999999887643
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=5.5e-14 Score=125.82 Aligned_cols=239 Identities=10% Similarity=-0.046 Sum_probs=168.9
Q ss_pred CCHHHHHHHhcCCCC----chhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHH
Q 045379 77 VDSNTIWDAFDSLPP----THATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLE 144 (352)
Q Consensus 77 g~~~~A~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~ 144 (352)
|....+...+...+. +...|..+...+...|+.+.+...++... +|..+...|.+.|++++|.+.|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555554443 34458888888888887776666665543 888888888888888889888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045379 145 LLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP---------PSAVVYNSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 145 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (352)
..+... .+..++..+..++...|++++|...++++.+..-. .....+..+...+.+.|++++|...|+++
T Consensus 125 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 125 CLELQP-NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 887542 35778888888888888888888888888764210 11234455677888888888888888888
Q ss_pred HHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 216 KRDCCQ-PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 216 ~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
.+..-. ++..++..+...|...|++++|++.|++..+.. +.+..+|..+...|...|++++|...|+++.+. .
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~--- 277 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--Q--- 277 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---
Confidence 776321 157888888888888889999988888887653 346778888888888889999888888887753 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 295 YAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 295 ~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.+...+..+..+|.+.|++++|.+.|.
T Consensus 278 --------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 278 --------------------PGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3367888999999999999999999986
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=2.5e-13 Score=118.04 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=153.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
++..+...+...|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 66778888999999999999999999877555 556777777999999999999999987 56788999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETY---TLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998874 443211 22344455669999999999999876 3668889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcch-hHHHHH
Q 045379 277 EAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEG-KCSYSL 342 (352)
Q Consensus 277 ~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~-A~~~~~ 342 (352)
+|...|++..+. .| -+..++..++..+...|+.++ +.+++.
T Consensus 218 eA~~~l~~al~~--~p-----------------------~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 218 AAEGVLQEALDK--DS-----------------------GHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHHHHH--CT-----------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CC-----------------------CCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999998764 22 367777888888888888866 455653
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=2.1e-13 Score=119.76 Aligned_cols=226 Identities=15% Similarity=0.095 Sum_probs=189.4
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHh-hccCcchhhHHhH--------HHHHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLR-LNKKWDPIVLMSC--------VSILLI 126 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~--------~~~~li 126 (352)
|........++..+...|++++|...|+++ |.+...|..+...+...+ +.+.+...+.... +|..+.
T Consensus 53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 132 (330)
T 3hym_B 53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132 (330)
T ss_dssp TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHH
T ss_pred CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 444456777888889999999999888765 357788888888888888 6665555554433 899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQ 206 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 206 (352)
..+...|++++|.+.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHH
Confidence 999999999999999999987653 245677789999999999999999999998874 556789999999999999999
Q ss_pred HHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 207 KAVEIFQRMKRDC--------CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 207 ~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
+|...+++..+.. .+....++..+...|...|++++|...+++..+.. +.+...+..+...|.+.|++++|
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHH
Confidence 9999999987642 13446789999999999999999999999998753 34677899999999999999999
Q ss_pred HHHHHHHHHC
Q 045379 279 EEIFEQLQGA 288 (352)
Q Consensus 279 ~~l~~~m~~~ 288 (352)
.+.+++..+.
T Consensus 290 ~~~~~~al~~ 299 (330)
T 3hym_B 290 VDYFHTALGL 299 (330)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHcc
Confidence 9999998754
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.61 E-value=1.5e-13 Score=129.18 Aligned_cols=217 Identities=12% Similarity=0.006 Sum_probs=168.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...+...|++++|.+.|.+..+.. |+..++..+...+...|++++|...+++..+.. +.+..++..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 45566677888889999999999888754 567788888888889999999999999888764 456788899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999988764 3356788889999999999999999999987753 4456788889999999999999999
Q ss_pred HHHHHHHCC-----CCCCHH-------HH-------------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcc
Q 045379 281 IFEQLQGAG-----IEPDVY-------AY-------------NALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHE 335 (352)
Q Consensus 281 l~~~m~~~~-----~~p~~~-------~~-------------~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~ 335 (352)
.|+++.+.. ...... .+ ...-.|...++......+.+...+..+...|.+.|+++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 999886531 111111 11 11223333556552233567889999999999999999
Q ss_pred hhHHHHH
Q 045379 336 GKCSYSL 342 (352)
Q Consensus 336 ~A~~~~~ 342 (352)
+|.+.|.
T Consensus 480 ~A~~~~~ 486 (537)
T 3fp2_A 480 EAIELFE 486 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=1.4e-13 Score=122.97 Aligned_cols=242 Identities=13% Similarity=-0.001 Sum_probs=124.6
Q ss_pred HHhcCCHHHHHH-HhcCCC---C-----chhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHccCCH
Q 045379 73 VQREVDSNTIWD-AFDSLP---P-----THATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQKSLH 135 (352)
Q Consensus 73 ~~~~g~~~~A~~-~~~~~~---~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~ 135 (352)
+.-.|++++|.. .|++.. + +...|..+...+...|+.+.+...+.... +|..+...+.+.|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 445578888887 666432 2 23445555555555554444444333322 555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNS---------------YIDGLL 200 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~ 200 (352)
++|.+.|++..+... .+..++..+..++...|++++|.+.++++.+... .+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 555555555554332 2445555555555555555555555555554321 11111110 122222
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
..|++++|...|+++.+.... ++..++..+...|...|++++|+..|++..... +.+..++..+...|...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555544211 034555555555555566666665555554431 223445555555555556666665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..|+++.+. .+.+...+..+..+|.+.|++++|.+.|.
T Consensus 272 ~~~~~al~~-------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 272 AAYRRALEL-------------------------QPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp HHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHh-------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555432 14467889999999999999999999986
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=6.4e-13 Score=115.46 Aligned_cols=221 Identities=14% Similarity=0.048 Sum_probs=173.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHh----------HHHHHHHHHHHccC
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMS----------CVSILLIEAYGQKS 133 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~li~~~~~~g 133 (352)
....+...|...|+++.|...++... ++..++..+...+...++.+.+.+.++.. ..+..+...+.+.|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 44567889999999999999887754 45556666666666555544444433321 16777789999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCCHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVY---NSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~ 210 (352)
++++|++.+++ +.+...+..+...+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999987 4688899999999999999999999999998874 443221 234455566799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEE-AEEIFEQLQGAG 289 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~l~~~m~~~~ 289 (352)
+|+++.+. .+.+...++.+..++.+.|++++|+..|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~- 264 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA- 264 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence 99999987 46789999999999999999999999999988753 4477889999999999999876 67899988764
Q ss_pred CCCCHHHH
Q 045379 290 IEPDVYAY 297 (352)
Q Consensus 290 ~~p~~~~~ 297 (352)
.|+....
T Consensus 265 -~P~~~~~ 271 (291)
T 3mkr_A 265 -HRSHPFI 271 (291)
T ss_dssp -CTTCHHH
T ss_pred -CCCChHH
Confidence 4544333
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=4.1e-13 Score=111.46 Aligned_cols=192 Identities=12% Similarity=-0.009 Sum_probs=158.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+.+.|++++|...|++..+..+ .+...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 456677888999999999999999988654 377899999999999999999999999998864 456788899999999
Q ss_pred cC-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 201 KG-----------GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 201 ~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
.. |++++|...|++..+.. +-+...+..+-.++...|++++|+..|++..+.. .+...+..+..+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99 99999999999998863 3467889999999999999999999999998876 7888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 270 AREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
...|++++|...|++..+. . +.+...+..+..++.+.|++++|.+.|.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~-----------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--A-----------------------PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--S-----------------------TTCHHHHHHHHHHHTC------------
T ss_pred HHcCCHHHHHHHHHHHHHh--C-----------------------CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999998864 2 3377888899999999999999998875
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7e-13 Score=123.77 Aligned_cols=217 Identities=9% Similarity=-0.088 Sum_probs=156.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...+...|++++|.+.|+++.+.. |+...+..+..++...|++++|...++++.+.. +.+...+..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 66677777888888888888888877654 336777778888888888888888888877653 345677888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..|++++|...|++..+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888887753 3356778888888888888888888888887642 3355678888888888888888888
Q ss_pred HHHHHHHCC-CCCC----HHHHHHHHHHHH-------------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 281 IFEQLQGAG-IEPD----VYAYNALMEAYR-------------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 281 l~~~m~~~~-~~p~----~~~~~~li~a~~-------------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++++.+.. -.++ ...+..+...+. .++......+.+...+..+...|.+.|++++|.+.|.
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888876531 1122 223333333321 4444422224567788888888999999999988875
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.5e-12 Score=108.61 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=152.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 567777788888888999988888876542 367788888888888999999999888887763 346778888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQP-STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
..|++++|...|+++.+.+..| +...+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999998887733344 45677888888888899999999888887653 335777888888888899999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..++++.+.. +.+...+..+...+...|+.++|.+++.
T Consensus 196 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 196 QYYDLFAQGG-------------------------GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHTTS-------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-------------------------cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888877531 2356667777888888888888888875
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.55 E-value=1.3e-12 Score=122.82 Aligned_cols=274 Identities=12% Similarity=0.046 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHHHHHHHc
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILLIEAYGQ 131 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~ 131 (352)
..+..+...+.+.|++++|...|++. |.++..|..+..++...|+.+.+...+.... +|..+...+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35577788888888888888888765 3577788888888888887776666655443 77888888888
Q ss_pred cCCHHHHHHHHHHHHhCC------------------------------------CCCCHHHHHH----------------
Q 045379 132 KSLHKKAEFTYLELLDSR------------------------------------CIPTEDTYAL---------------- 159 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~------------------------------------~~p~~~~~~~---------------- 159 (352)
.|++++|.+.|+.+.... ..|+......
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 888888888885332110 0111111110
Q ss_pred ----------HHHHHH------------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHcCCCHHHHHH
Q 045379 160 ----------LLKAYC------------MSGLLEKAEAVFREMRKYGLPPS-------AVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 160 ----------li~~~~------------~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~a~~ 210 (352)
+..++. ..|++++|..+++++.+..- .+ ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 111111 12467888888888876532 22 2356667778888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
.|++..+. .|+..++..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.++++.+...
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99998886 4667888888899999999999999999887653 34677888889999999999999999998876531
Q ss_pred CCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 291 EPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 291 ~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+...+..+...+. .++......+.+...+..+...|...|++++|.+.|.
T Consensus 342 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 342 -ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp -TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23455555555554 5555522335567899999999999999999999986
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3.6e-12 Score=105.28 Aligned_cols=210 Identities=14% Similarity=-0.016 Sum_probs=169.0
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHK 136 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 136 (352)
|....++..+...|...|++++|...|++.. |+. ..+|..+...|...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~~~~~ 59 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-------------------------ELAWLVRAEIYQYLKVND 59 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------------HHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-------------------------hHHHHHHHHHHHHcCChH
Confidence 3344577888999999999999999887642 111 115677778889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMS-GLLEKAEAVFREMRKYGLPP-SAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
+|.+.|++..+... .+..++..+...+... |++++|...++++.+.+..| +...+..+...+...|++++|...|++
T Consensus 60 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 60 KAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987543 3677899999999999 99999999999998843333 367888999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 215 MKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
..+.. +.+...+..+...+...|++++|.+.+++..+.....+...+..+...+...|+.++|..+++.+.+. .|+.
T Consensus 139 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~ 215 (225)
T 2vq2_A 139 SLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYS 215 (225)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCC
Confidence 88763 34688899999999999999999999999877532157778888888899999999999999998754 3544
Q ss_pred HHHH
Q 045379 295 YAYN 298 (352)
Q Consensus 295 ~~~~ 298 (352)
..+.
T Consensus 216 ~~~~ 219 (225)
T 2vq2_A 216 EELQ 219 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 30
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.54 E-value=2.1e-11 Score=107.95 Aligned_cols=265 Identities=10% Similarity=-0.027 Sum_probs=199.9
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH-----------HHHH
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC-----------VSIL 124 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 124 (352)
|.....+..+...|...|++++|...|++. |.+...|..+..++...|+.+.+...+.... .+..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 344557888999999999999999988765 3467788888888888887766555544321 3333
Q ss_pred H------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045379 125 L------------IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVY 192 (352)
Q Consensus 125 l------------i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 192 (352)
+ ...+...|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3 6788999999999999999987543 467889999999999999999999999998863 5678899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT------------LMINLYGKASKSFMALKLFNEMRSHKCKPN-I 259 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~ 259 (352)
..+...|...|++++|...|++..+.. +.+...+. .+...+.+.|++++|...+++..+.. |+ .
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 268 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVA 268 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch
Confidence 999999999999999999999988763 23344443 23667889999999999999988753 33 2
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHH
Q 045379 260 ----CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMV 325 (352)
Q Consensus 260 ----~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li 325 (352)
..+..+...+.+.|++++|...+++..+.. ..+...+..+...+. .++....-.+-+...+..+.
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 235567788999999999999999998752 235666666666655 55555222234566666666
Q ss_pred HHHHH
Q 045379 326 DAYGR 330 (352)
Q Consensus 326 ~a~~~ 330 (352)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-12 Score=109.82 Aligned_cols=209 Identities=10% Similarity=-0.013 Sum_probs=141.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG--LPPS----AVVYNS 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~~ 194 (352)
.|..+...+...|++++|.+.|++..+.. .+...+..+..++...|++++|...+++..+.. ..++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 67778888889999999999999988766 678888999999999999999999998887642 1122 578888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+...|...|++++|...|++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 888999999999999999988874 2332 22334455555555555554431 1223345555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 275 CEEAEEIFEQLQGAGIEPDVYAYNALMEAYR----------LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 275 ~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~----------~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+++|...+++..+.. ..+...+..+...+. .++......+.+...+..+..+|.+.|++++|.+.|.
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555554432 113344444443333 3333311124468889999999999999999999986
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=7.7e-13 Score=109.76 Aligned_cols=195 Identities=15% Similarity=0.064 Sum_probs=152.6
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCCC---C-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHH
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSLP---P-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHK 136 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 136 (352)
.....+..+...+.+.|++++|...|++.. | +.. .|..+...+.+.|+++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------------------a~~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE--------------------------ALYWLARTQLKLGLVN 56 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH--------------------------HHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------------------HHHHHHHHHHHcCCHH
Confidence 345577888899999999999999887542 2 222 4566677788899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMS-----------GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+|...|++..+..+ .+...+..+..++... |++++|...+++..+.. +.+...+..+-..|...|++
T Consensus 57 ~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 57 PALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh
Confidence 99999999987653 3677899999999999 99999999999998863 34678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
++|...|++..+.. .+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999887 689999999999999999999999999998753 446778999999999999999999999876
Q ss_pred H
Q 045379 286 Q 286 (352)
Q Consensus 286 ~ 286 (352)
.
T Consensus 212 ~ 212 (217)
T 2pl2_A 212 H 212 (217)
T ss_dssp -
T ss_pred h
Confidence 4
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1e-11 Score=102.58 Aligned_cols=194 Identities=16% Similarity=0.098 Sum_probs=164.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...+...|++++|.+.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 678888999999999999999999987543 367899999999999999999999999998763 456788999999999
Q ss_pred cC-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 201 KG-GNPQKAVEIFQRMKRDCCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 201 ~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
.. |++++|...++++.+.+..|+ ...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 99 999999999999988433343 6788999999999999999999999998753 34578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCE-PDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~-p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
...++++.+.. + .+...+..+...+...|+.++|..++.
T Consensus 167 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 167 DYYFKKYQSRV-------------------------EVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHH-------------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC-------------------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999987531 2 356667777778888888888888775
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.2e-11 Score=104.43 Aligned_cols=200 Identities=14% Similarity=-0.017 Sum_probs=166.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLPP-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 141 (352)
...+..+...|...|++++|...|++... ++. ...+|..+...|.+.|++++|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------------------~~~~~~~la~~~~~~~~~~~A~~~ 93 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----------------------SADAHAALAVVFQTEMEPKLADEE 93 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34667888888888999998888875420 000 011567788889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 045379 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP-SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC 220 (352)
Q Consensus 142 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 220 (352)
|++..+... .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...|...|++++|...|++..+..
T Consensus 94 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 171 (252)
T 2ho1_A 94 YRKALASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN- 171 (252)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 999987643 367899999999999999999999999998843344 56778889999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 221 QPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999998753 456778899999999999999999999999875
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.8e-12 Score=107.48 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=142.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 667777788888999999999998887543 367788888888999999999999998887763 346788888888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999888764 4467788888889999999999999998887653 3467788888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 281 IFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 281 l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++++.+.. +.+..++..+..+|.+.|++++|.+.|.
T Consensus 181 ~~~~~~~~~-------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 181 QFAAVTEQD-------------------------PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHhC-------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 988876531 2356677888888889999999988886
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=9.5e-13 Score=115.34 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=182.0
Q ss_pred cCcchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH--------HHHHH--
Q 045379 60 PVLSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC--------VSILL-- 125 (352)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~l-- 125 (352)
|.....+..+...|.+.|++++|...|++. |.+...|..+...+...|+.+.+...+.... .+..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 445567788999999999999999988865 3577888888888888887766655554433 22222
Q ss_pred ------------HH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045379 126 ------------IE-AYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVY 192 (352)
Q Consensus 126 ------------i~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 192 (352)
.. .+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 22 37788999999999999987653 378899999999999999999999999998763 4567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP-----------NICT 261 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-----------~~~t 261 (352)
..+...|...|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+..... +..+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 999999999999999999999988764 4468899999999999999999999999987643111 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 262 YTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
|..+..++.+.|+.++|..++++..
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999987543
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=7.9e-11 Score=100.87 Aligned_cols=215 Identities=15% Similarity=0.005 Sum_probs=179.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHc----cCCHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQ----KSLHK 136 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 136 (352)
...+..+...|...|++++|...|++.. .+.. ++..+...|.. .++++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------a~~~lg~~~~~g~~~~~~~~ 59 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENS--------------------------GCFNLGVLYYQGQGVEKNLK 59 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH--------------------------HHHHHHHHHHHTSSSCCCHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHH--------------------------HHHHHHHHHHcCCCcCCCHH
Confidence 3466788888999999999999887542 1111 45556677777 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK----GGNPQKA 208 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a 208 (352)
+|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 60 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 60 KAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH
Confidence 9999999999875 78889999999999 999999999999998875 67888999999999 9999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 045379 209 VEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR----EGLCEEAEE 280 (352)
Q Consensus 209 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~ 280 (352)
...|++..+.+ +...+..+-..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..
T Consensus 134 ~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 134 VEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 99999998875 67788888888888 899999999999998864 56788888999999 999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCcchhHHHHH
Q 045379 281 IFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGR----AGLHEGKCSYSL 342 (352)
Q Consensus 281 l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~----~g~~~~A~~~~~ 342 (352)
.|++..+.+ +...+..+...|.+ .|++++|.++|.
T Consensus 208 ~~~~a~~~~---------------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 208 RYSKACELE---------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHTT---------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHhCC---------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 999988653 24456677777777 889999998886
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=9e-12 Score=105.15 Aligned_cols=213 Identities=11% Similarity=-0.047 Sum_probs=145.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHH---------------hHHHHHH
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLM---------------SCVSILL 125 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~l 125 (352)
..+..+...+...|++++|...|++.. .+...|..+..++...++.+.+...+.. ..+|..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 356788888899999999988886542 4445555555555555444433332221 1245555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
...+.+.|++++|.+.|++..+.. |+. ..+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 566666666666666666665532 332 23444555666666666655542 33456777888888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
++|...|++..+.. +.+..++..+..+|...|++++|+..|++..+.. +.+...|..+...+.+.|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999888764 3467888888889999999999999998887653 345778888888899999999999998887
Q ss_pred HHC
Q 045379 286 QGA 288 (352)
Q Consensus 286 ~~~ 288 (352)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.5e-11 Score=101.63 Aligned_cols=199 Identities=15% Similarity=0.080 Sum_probs=151.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHH
Q 045379 63 SPTAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l 141 (352)
+..+..+...+...|++++|...|++.. .++.. ..++..+...+.+.|++++|.+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-----------------------~~~~~~la~~~~~~~~~~~A~~~ 79 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-----------------------AIPYINFANLLSSVNELERALAF 79 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC-----------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-----------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 3466777888888899998877776542 11100 11566777888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 045379 142 YLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 142 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 221 (352)
|++..+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...+++..+.. +
T Consensus 80 ~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 156 (243)
T 2q7f_A 80 YDKALELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-E 156 (243)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 999987543 367899999999999999999999999998864 4567889999999999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+...+..+...+...|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 478899999999999999999999999987753 446788999999999999999999999999865
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.4e-12 Score=110.25 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=164.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS-------RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY------G-LP 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~ 186 (352)
++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++..+. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 7788889999999999999999998863 23334568889999999999999999999998764 2 23
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD------CC-QPSTETYTLMINLYGKASKSFMALKLFNEMRSH------ 253 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------ 253 (352)
....++..+...|...|++++|...|++..+. +- +....++..+...|...|++++|++.+++..+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999999999999988764 22 223567888999999999999999999998663
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHH-----------------HHH
Q 045379 254 KCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGA-------GIEPDVYAYNALMEAYR-----------------LIS 308 (352)
Q Consensus 254 g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~p~~~~~~~li~a~~-----------------~~~ 308 (352)
+-.| ...++..+...|...|++++|.+.++++.+. ...+...........+. .++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2122 3457888999999999999999999998753 12222222222222222 111
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 309 RMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 309 ~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
......+.+..++..+..+|.+.|++++|.++|.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1111223456788999999999999999999986
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=8.5e-11 Score=94.31 Aligned_cols=164 Identities=19% Similarity=0.159 Sum_probs=145.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...|.+.|++++|++.|++..+..+ -+..++..+..++.+.|++++|...+....... +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 788899999999999999999999997653 367799999999999999999999999988764 446678888889999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++|.+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988764 4468889999999999999999999999998763 4567889999999999999999999
Q ss_pred HHHHHHHC
Q 045379 281 IFEQLQGA 288 (352)
Q Consensus 281 l~~~m~~~ 288 (352)
.|++..+.
T Consensus 163 ~~~~al~~ 170 (184)
T 3vtx_A 163 YFKKALEK 170 (184)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998864
No 42
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1e-11 Score=107.81 Aligned_cols=219 Identities=16% Similarity=0.053 Sum_probs=164.0
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCC
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSL 134 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (352)
.+...|....++..+...|...|++++|...|++.. ..+...+.. .-.....++..+...|...|+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----------~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~ 84 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQAL----------EDLEKTSGH----DHPDVATMLNILALVYRDQNK 84 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------HHHHHHHCS----SSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHcCC----CCHHHHHHHHHHHHHHHHCCC
Confidence 355667777788999999999999999999987642 111111100 011112277888889999999
Q ss_pred HHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHH
Q 045379 135 HKKAEFTYLELLDS------RC-IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY------GL-PPSAVVYNSYIDGLL 200 (352)
Q Consensus 135 ~~~a~~l~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~ 200 (352)
+++|.+.+++..+. +- +....++..+...+...|++++|...+++..+. +. +.....+..+...|.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999988753 22 234558888999999999999999999988764 22 234566888899999
Q ss_pred cCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------
Q 045379 201 KGGNPQKAVEIFQRMKRD------CCQP-STETYTLMINLYGKASKSFMALKLFNEMRSH-------------------- 253 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------------------- 253 (352)
..|++++|...|++..+. +-.| ...++..+...|...|++++|.+.+++..+.
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 999999999999988764 2122 3457888999999999999999999888652
Q ss_pred ----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 254 ----------------------------KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 254 ----------------------------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..+.+..++..+...|.+.|++++|.+.|++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122345788899999999999999999998764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=2.9e-12 Score=109.51 Aligned_cols=162 Identities=10% Similarity=-0.022 Sum_probs=84.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...|...|++++|.+.|++..+... .+..++..+..++...|++++|...++++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 445555555666666666666666655322 23455566666666666666666666665553 233233333333444
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK---PNICTYTALVNAFAREGLCEE 277 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~ 277 (352)
..|++++|...+++..... +++...+ .++..+...++.++|.+.+++....... .+..++..+...|.+.|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 4566666666665554432 2222222 2445555555556666666555432110 013455566666666666666
Q ss_pred HHHHHHHHHH
Q 045379 278 AEEIFEQLQG 287 (352)
Q Consensus 278 a~~l~~~m~~ 287 (352)
|...|++..+
T Consensus 234 A~~~~~~al~ 243 (275)
T 1xnf_A 234 ATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=3.5e-10 Score=113.46 Aligned_cols=243 Identities=14% Similarity=0.088 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHh---HHHHHHHHHHHccCCHHHHHHHHH
Q 045379 67 QQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMS---CVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
..+...+...|.+++|..+|++........+.++. ..++.+++.+..+.+ .+|..+..++.+.|++++|.+.|.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44677788899999999999987644333444443 333333333333222 299999999999999999999996
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 045379 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS 223 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 223 (352)
+. -|...|..++.+|.+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 53 578899999999999999999999999888765 33333445999999999998644442 2 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 224 TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEA 303 (352)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a 303 (352)
...|..+-..|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 778888999999999999999999985 47999999999999999999999987 366888888877
Q ss_pred HH---HHHHH---hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 304 YR---LISRM---HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 304 ~~---~~~~m---~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
|. -|+.. ..++..+...+..++.-|.+.|.+++|.+++.
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 22222 33466788899999999999999999999985
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=4.7e-10 Score=95.55 Aligned_cols=215 Identities=10% Similarity=0.021 Sum_probs=163.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP--SAVVYNSYIDGLL 200 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~ 200 (352)
......+.+.|++++|.+.|++..+... .+...+..+..++...|++++|.+.+++..+.+-.+ ....|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4456778899999999999999987653 245588888889999999999999999998843222 2345889999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..|++++|...|++..+.. +.+..++..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 3466889999999999999999999999987762 4456677777734445569999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHH-------------HHHHH--hcCCCCC------HHHHHHHHHHHHHcCCcchhH
Q 045379 281 IFEQLQGAGIEPD-VYAYNALMEAYR-------------LISRM--HMGCEPD------RASYNIMVDAYGRAGLHEGKC 338 (352)
Q Consensus 281 l~~~m~~~~~~p~-~~~~~~li~a~~-------------~~~~m--~~~~~p~------~~~~~~li~a~~~~g~~~~A~ 338 (352)
.|+++.+. .|+ ...+..+..++. .++.. ...-.|+ ...|..+...|.+.|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999875 333 444444444333 23333 1111233 367888999999999999999
Q ss_pred HHHH
Q 045379 339 SYSL 342 (352)
Q Consensus 339 ~~~~ 342 (352)
+.|.
T Consensus 242 ~~~~ 245 (272)
T 3u4t_A 242 AAWK 245 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=5.3e-11 Score=101.51 Aligned_cols=221 Identities=9% Similarity=-0.016 Sum_probs=155.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhHHhH-----------HHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVLMSC-----------VSILLIEAY 129 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~li~~~ 129 (352)
........+...|++++|...|++. |.+...|..+..++...++.+.+...+.... +|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4456677888999999998888764 3456677777777777766655554444332 477888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
...|++++|.+.|++..+... .+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876543 25567888888888888888888888887766 2445566666662333445888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 045379 210 EIFQRMKRDCCQPSTETYTLMINLYGKASK---SFMALKLFNEMRSHK-CKPN------ICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 210 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g-~~p~------~~t~~~li~~~~~~g~~~~a~ 279 (352)
..|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887763 3346677777777777777 777777777765431 1133 246777778888888888888
Q ss_pred HHHHHHHHC
Q 045379 280 EIFEQLQGA 288 (352)
Q Consensus 280 ~l~~~m~~~ 288 (352)
+.|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888754
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=9.4e-11 Score=99.99 Aligned_cols=205 Identities=14% Similarity=0.018 Sum_probs=120.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCI---PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...|++..+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346666777777666654321 134466666666666777777777776666542 3345666666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
|...|++..+.. +.+..++..+...|...|++++|.+.|+++.+. .|+.......+..+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777666642 224566666666677777777777777666653 23333344444444556677777777665554
Q ss_pred CCCCCCHHHHHHHHHHH----------HHHHHHhcCCCC-----CHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 288 AGIEPDVYAYNALMEAY----------RLISRMHMGCEP-----DRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 288 ~~~~p~~~~~~~li~a~----------~~~~~m~~~~~p-----~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.. .++...+. +...+ ..++... ...| +...+..+...|.+.|++++|.+.|.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADA-TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh-cccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 12222222 11111 1222220 0111 25778889999999999999999986
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=2e-09 Score=92.00 Aligned_cols=183 Identities=11% Similarity=-0.007 Sum_probs=159.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
++..+...+...|++++|.+.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667778889999999999999999883 356788889999999 999999999999999886 678899999
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045379 197 DGLLK----GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268 (352)
Q Consensus 197 ~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 268 (352)
..|.. .+++++|...|++..+.+ +..++..+-..|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999998875 78899999999999 999999999999999876 67788888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCcchhHHH
Q 045379 269 FAR----EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGR----AGLHEGKCSY 340 (352)
Q Consensus 269 ~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~----~g~~~~A~~~ 340 (352)
|.. .+++++|...|++..+.+ +...+..+...|.. .|++++|.++
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---------------------------DSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 988 999999999999988653 34555667777777 8888888888
Q ss_pred HH
Q 045379 341 SL 342 (352)
Q Consensus 341 ~~ 342 (352)
|.
T Consensus 209 ~~ 210 (273)
T 1ouv_A 209 YS 210 (273)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2e-10 Score=91.41 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=144.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 667788889999999999999999886543 467889999999999999999999999998763 456788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
..|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998763 4578889999999999999999999999988763 4567889999999999999999999
Q ss_pred HHHHHHHC
Q 045379 281 IFEQLQGA 288 (352)
Q Consensus 281 l~~~m~~~ 288 (352)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998753
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=1.3e-10 Score=104.67 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=171.2
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhh-ccCcchhhHHhH--------HHHHHHHH
Q 045379 62 LSPTAQQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRL-NKKWDPIVLMSC--------VSILLIEA 128 (352)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~--------~~~~li~~ 128 (352)
...+++.+...+.+.|++++|+..|++. |.+...|+.+..++...++ .+.+...+.... +|+.+...
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3447788899999999999999999865 3567888888888888775 655555544433 88888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHHH
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK-GGNPQK 207 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~ 207 (352)
+.+.|++++|+..|++..+... -+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998887554 267788888889999999999999999988864 3467888888888888 565577
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 045379 208 A-----VEIFQRMKRDCCQPSTETYTLMINLYGKAS--KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG------- 273 (352)
Q Consensus 208 a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g------- 273 (352)
| +..|++..+.. +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 47788777653 336778888888888887 588888888887 32 3456677888888888764
Q ss_pred --CHHHHHHHHHHH-HH
Q 045379 274 --LCEEAEEIFEQL-QG 287 (352)
Q Consensus 274 --~~~~a~~l~~~m-~~ 287 (352)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 258899999888 54
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=4.8e-10 Score=89.87 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
-++..|..+-..+...|++++|.+.|++..+.. +-+..++..+...|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367889999999999999999999999998864 4578889999999999999999999999988764 34677888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHh
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMH 311 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~ 311 (352)
..+...++++.|...+.+..... +-+...+..+...|.+.|++++|.+.|++..+. .
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~-------------------- 137 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--K-------------------- 137 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--c--------------------
Confidence 99999999999999999987653 446778999999999999999999999998764 2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 312 MGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 312 ~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.+...|..+..+|.+.|++++|.+.|.
T Consensus 138 ---p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 138 ---PGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---chhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3377889999999999999999999986
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.4e-10 Score=105.60 Aligned_cols=294 Identities=11% Similarity=-0.049 Sum_probs=194.4
Q ss_pred ccCccccccccccCcCcCcchhHHHHHHHHHh--cCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhhccCcchhhH
Q 045379 44 RGKGWKYGSGFVDGIFPVLSPTAQQILRFVQR--EVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRLNKKWDPIVL 117 (352)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 117 (352)
+.+++++...+.+...+....++..+..++.+ .+++++|+..|++. |.++..+..+..++...+..+..++++.
T Consensus 117 ~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34444444444444455555566665555544 35789999999865 3567777777777777777777666665
Q ss_pred HhH-----------HHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 118 MSC-----------VSILLIEAYGQ----KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 118 ~~~-----------~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
.+. ++..+...+.. .|++++|.+.+++...... .+..++..+...+...|++++|...+++..+
T Consensus 197 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 197 PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 443 45555444444 5778899999998887543 4677899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcC-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 183 YGLPPSAVVYNSYIDGLLKG-------------------GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243 (352)
Q Consensus 183 ~g~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (352)
.. +.+..++..+...|... +.++.|...|++..+.. +.+..++..+...|...|++++|
T Consensus 276 ~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 276 YI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 63 44566676666655432 23567788888777653 33556788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHhcCCCCCHH
Q 045379 244 LKLFNEMRSHKCKPNIC--TYTALVN-AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR-LISRMHMGCEPDRA 319 (352)
Q Consensus 244 ~~l~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~-~~~~m~~~~~p~~~ 319 (352)
++.|++..+....|... .+..+.. .....|+.++|...|.+..+. .|+.......+.... +++.....-+.+..
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999998764333221 2222222 345789999999999998865 455444433333332 33443222356788
Q ss_pred HHHHHHHHHHHcCCcchhHHHHH
Q 045379 320 SYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 320 ~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+|..|..+|...|++++|.+.|.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999986
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.2e-10 Score=108.26 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=145.0
Q ss_pred HHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLH-KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~-~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
.|..+...+...|++ ++|.+.|++..+... -+...|..+..+|...|++++|.+.|++..+.. |+...+..+...|
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~ 180 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 788899999999999 999999999987543 257899999999999999999999999998864 6778999999999
Q ss_pred HcC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC---CCH
Q 045379 200 LKG---------GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA--------SKSFMALKLFNEMRSHKCK---PNI 259 (352)
Q Consensus 200 ~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~l~~~m~~~g~~---p~~ 259 (352)
... |++++|...|++..+.. +.+...|..+..+|... |++++|++.|++..+.. + -+.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 258 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNP 258 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCH
Confidence 999 99999999999998864 44688999999999998 99999999999998752 2 378
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..|..+..+|...|++++|.+.|++..+.
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999998764
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=3.7e-11 Score=108.97 Aligned_cols=259 Identities=14% Similarity=-0.026 Sum_probs=181.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC----Cch----hhHHHHHHHHHHHhhccCcchhhHHhH--------------HH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP----PTH----ATWDDLINVSVQLRLNKKWDPIVLMSC--------------VS 122 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~ 122 (352)
....+...+...|++++|...|++.. .+. ..|..+...+...|+.+.+...+.... ++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34567778889999999999997653 333 467777777777777665555433221 77
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDS----R-CIPTEDTYALLLKAYCMSGL-----------------LEKAEAVFREM 180 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~----~-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m 180 (352)
..+...|...|++++|.+.|.+..+. + .+....++..+...+...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88888888899999999988877643 1 11234477788888888888 88888888776
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 181 RKY----GL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 181 ~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+. +. +....++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11 12235777888888889999999998888765310 012 236788888889999999999988877
Q ss_pred HhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 045379 251 RSHK----CK-PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMV 325 (352)
Q Consensus 251 ~~~g----~~-p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li 325 (352)
.... .. ....++..+...|...|++++|...+++..+.. .... .......++..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------~~~~-~~~~~~~~~~~la 350 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA------------------QELG-DRIGEARACWSLG 350 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------HHHT-CHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------HHCC-ChHHHHHHHHHHH
Confidence 5421 00 114567788888889999999999888876420 0000 0011245678899
Q ss_pred HHHHHcCCcchhHHHHH
Q 045379 326 DAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 326 ~a~~~~g~~~~A~~~~~ 342 (352)
..|.+.|++++|.++|.
T Consensus 351 ~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHH
Confidence 99999999999999986
No 55
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.29 E-value=2.3e-08 Score=93.10 Aligned_cols=261 Identities=10% Similarity=-0.028 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHhcCCC--CchhhHHHHHHHHHH----HhhccCcchhhHHhH------HHHHHHH
Q 045379 64 PTAQQILRFVQR----EVDSNTIWDAFDSLP--PTHATWDDLINVSVQ----LRLNKKWDPIVLMSC------VSILLIE 127 (352)
Q Consensus 64 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~------~~~~li~ 127 (352)
+.+..|...|.. .++.++|...|++.. .++..+..+...+.. .++...+...++... .+..|..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 355667777777 777777777776543 355555556655554 222222222222211 5666666
Q ss_pred HHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 128 AYGQ----KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 128 ~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
.|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 229 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMY 229 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6665 677777877777777653 56677777777776 677777777777777654 345666666666
Q ss_pred Hc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 200 LK----GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 200 ~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
.. .+++++|...|++..+.| +...+..+-..|.. .++.++|++.|++..+.| +...+..+-..|..
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 65 667777777777776653 45566666666666 677777777777776554 44556666666666
Q ss_pred c-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HHHHHH-hcCCCCCHHHHHHHHHHHHH--
Q 045379 272 E-----GLCEEAEEIFEQLQGAGIEPDVYAYNALMEAY-------------RLISRM-HMGCEPDRASYNIMVDAYGR-- 330 (352)
Q Consensus 272 ~-----g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~-------------~~~~~m-~~~~~p~~~~~~~li~a~~~-- 330 (352)
. ++.++|...|++..+.|. ...+..+-..| ..+++. +. .+...+..|...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCC
Confidence 5 677777777777766542 22222222222 133333 22 345556666666666
Q ss_pred --cCCcchhHHHHH
Q 045379 331 --AGLHEGKCSYSL 342 (352)
Q Consensus 331 --~g~~~~A~~~~~ 342 (352)
.++.++|.++|.
T Consensus 378 g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 378 GVKKDEQQAAIWMR 391 (490)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 566666666654
No 56
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=5.2e-11 Score=101.71 Aligned_cols=214 Identities=12% Similarity=0.075 Sum_probs=145.7
Q ss_pred HccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 045379 130 GQKSLHKKAEFTYLELLD-------SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY------G-LPPSAVVYNSY 195 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~-------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~~~l 195 (352)
...|++++|.++|++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665553 222234568888889999999999999999887653 2 22345678888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRD------C-CQPSTETYTLMINLYGKASKSFMALKLFNEMRSH------KCKP-NICT 261 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~t 261 (352)
...|...|++++|...|++..+. . .+....++..+...|...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999887654 1 1224567888889999999999999999888654 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHH-HHHHHHHHHH----------------HHHHHhcCCCCC
Q 045379 262 YTALVNAFAREGLCEEAEEIFEQLQGA-------GIEPDVY-AYNALMEAYR----------------LISRMHMGCEPD 317 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~p~~~-~~~~li~a~~----------------~~~~m~~~~~p~ 317 (352)
+..+...|...|++++|...+++..+. ...+... .+..+..... .++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999999888652 1122221 1111111111 111111122334
Q ss_pred HHHHHHHHHHHHHcCCcchhHHHHHH
Q 045379 318 RASYNIMVDAYGRAGLHEGKCSYSLV 343 (352)
Q Consensus 318 ~~~~~~li~a~~~~g~~~~A~~~~~~ 343 (352)
..++..+...|...|++++|.++|..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66788999999999999999999863
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.25 E-value=1.5e-10 Score=104.37 Aligned_cols=258 Identities=14% Similarity=-0.001 Sum_probs=170.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC----Cc----hhhHHHHHHHHHHHhhccCcchhhHHh--------------HHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP----PT----HATWDDLINVSVQLRLNKKWDPIVLMS--------------CVS 122 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~ 122 (352)
....+...+...|++++|...|++.. .+ ...|..+...+...|+.+.+...+... .++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 44677788889999999999987652 33 245666666776666665555443321 167
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCI-PT----EDTYALLLKAYCMSGL--------------------LEKAEAVF 177 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 177 (352)
..+...|...|++++|...+.+..+.... ++ ..++..+...+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77778888888888888888776642100 12 3477777778888888 88888877
Q ss_pred HHHHHC----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 178 REMRKY----GLP-PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMALKLF 247 (352)
Q Consensus 178 ~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~l~ 247 (352)
++..+. +.. ....++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 765432 211 1234677777788888888888888877654210 112 236777788888888888888888
Q ss_pred HHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHH
Q 045379 248 NEMRSH----KCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGC-EPDRASY 321 (352)
Q Consensus 248 ~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~-~p~~~~~ 321 (352)
++.... +..+. ..++..+...|...|++++|...+.+..+.. . ..+. .....++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------------~--~~~~~~~~~~~~ 310 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA------------------Q--ELNDRIGEGRAC 310 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------H--HTTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH------------------H--hcCCcHHHHHHH
Confidence 776532 11111 4467777788888888888888888765320 0 0000 1124566
Q ss_pred HHHHHHHHHcCCcchhHHHHH
Q 045379 322 NIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 322 ~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+...|...|++++|.++|.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 778888888899988888875
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=3.8e-09 Score=92.23 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=130.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-ED-TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG 198 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 198 (352)
.|..++..+.+.|++++|.++|++..+.. |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 77888888889999999999999998743 43 33 78889999999999999999999998764 3344555444333
Q ss_pred H-HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCC
Q 045379 199 L-LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKP--NICTYTALVNAFAREGL 274 (352)
Q Consensus 199 ~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p--~~~t~~~li~~~~~~g~ 274 (352)
. ...|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 23799999999999887752 3467888999999999999999999999998863 455 46678888898899999
Q ss_pred HHHHHHHHHHHHHC
Q 045379 275 CEEAEEIFEQLQGA 288 (352)
Q Consensus 275 ~~~a~~l~~~m~~~ 288 (352)
.++|..+++++.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=6.1e-10 Score=108.08 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=144.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|+.|...|.+.|++++|++.|++..+... -+..+|..+..++.+.|++++|++.|++..+.. +-+...|..+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 788999999999999999999999997543 257799999999999999999999999998863 346789999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...+..+...|...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 9999999999999998864 3468899999999999999999999999998753 3357789999999999999999999
Q ss_pred HHHHHHH
Q 045379 281 IFEQLQG 287 (352)
Q Consensus 281 l~~~m~~ 287 (352)
.++++.+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888753
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=5.8e-10 Score=100.33 Aligned_cols=215 Identities=8% Similarity=0.010 Sum_probs=110.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-LEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
+|+.+...+.+.|++++|++.|++..+... -+...|+.+..++...|+ +++|+..|++..+.. +-+...|..+-.++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 444445555555556666666655554332 134455555555555554 666666665555542 23445555555555
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAR-EGLCEEA 278 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a 278 (352)
...|++++|...|++..+.. +-+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 55566666666665555542 2245555555555555566666666665555442 2244555555555555 4443444
Q ss_pred -----HHHHHHHHHCCCCC-CHHHHHHHHHHHH------------HHHHHhcCCCCCHHHHHHHHHHHHHcC--------
Q 045379 279 -----EEIFEQLQGAGIEP-DVYAYNALMEAYR------------LISRMHMGCEPDRASYNIMVDAYGRAG-------- 332 (352)
Q Consensus 279 -----~~l~~~m~~~~~~p-~~~~~~~li~a~~------------~~~~m~~~~~p~~~~~~~li~a~~~~g-------- 332 (352)
+..|.+..+. .| +...|+.+-..+. .+..+ ...+.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3445554432 22 2223332222221 22222 222345667777777777764
Q ss_pred -CcchhHHHHH
Q 045379 333 -LHEGKCSYSL 342 (352)
Q Consensus 333 -~~~~A~~~~~ 342 (352)
.+++|.++|.
T Consensus 332 ~~~~~A~~~~~ 342 (382)
T 2h6f_A 332 DILNKALELCE 342 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 2477777765
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=1.5e-10 Score=101.27 Aligned_cols=257 Identities=14% Similarity=0.016 Sum_probs=167.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCC----Cc----hhhHHHHHHHHHHHhhccCcchhhHHh--------------HHHHH
Q 045379 67 QQILRFVQREVDSNTIWDAFDSLP----PT----HATWDDLINVSVQLRLNKKWDPIVLMS--------------CVSIL 124 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 124 (352)
......+...|++++|...|++.. .+ ...+..+...+...|+.+.+...+... .++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 445667778899999988887652 23 245666666666666655544443321 16777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRC-IPT----EDTYALLLKAYCMSGL--------------------LEKAEAVFRE 179 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~ 179 (352)
+...+...|++++|.+.+.+..+... .++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77888888888888888877654211 012 3367777778888888 8888877776
Q ss_pred HHHC----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 180 MRKY----GL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD----CC-QPSTETYTLMINLYGKASKSFMALKLFNE 249 (352)
Q Consensus 180 m~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 249 (352)
..+. +. +....++..+...|...|++++|...+++..+. +. .....++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 11 112346677777788888888888888776542 10 01123677777888888888888888877
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045379 250 MRSH----KCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIM 324 (352)
Q Consensus 250 m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~l 324 (352)
.... +..+ ...++..+...|...|++++|...+++..+.. ... ........++..+
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------------~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA------------------QEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------HHH-TCHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------------------Hhc-CCcHHHHHHHHHH
Confidence 6532 1111 14466777778888888888888887765320 000 0001124567889
Q ss_pred HHHHHHcCCcchhHHHHH
Q 045379 325 VDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 325 i~a~~~~g~~~~A~~~~~ 342 (352)
...|.+.|++++|.++|.
T Consensus 310 a~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH
Confidence 999999999999999986
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.24 E-value=5.9e-09 Score=104.77 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=138.7
Q ss_pred hcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 045379 75 REVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSC---VSILLIEAYGQKSLHKKAEFTYLELLDSRCI 151 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 151 (352)
..|++++|.+..+++ .++.+|..+..++...|+.+++-..+.... .|..++.+|.+.|++++|.+.|...++..
T Consensus 1088 ~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-- 1164 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-- 1164 (1630)
T ss_pred HHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--
Confidence 556666666666655 445666666666666655544444443322 56666666666666666666666554433
Q ss_pred CCHHHHHHHHHHHHHcCCHH----------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 045379 152 PTEDTYALLLKAYCMSGLLE----------------------------KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~----------------------------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 203 (352)
+++...+.+..+|++.++++ +|..+|... ..|..+..+|.+.|
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 22222223555555555555 444444432 24444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
++++|.+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++
T Consensus 1236 e~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1236 EYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred CHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444331 334444444444444444444443332 23456667889999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH------HHHHH-----hcCCCC------CHHHHHHHHHHHHHcCCcchhHHHH
Q 045379 284 QLQGAGIEPDVYAYNALMEAYR------LISRM-----HMGCEP------DRASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 284 ~m~~~~~~p~~~~~~~li~a~~------~~~~m-----~~~~~p------~~~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
...... .-....|+-+...++ +.+.. .-.++| +...|.-++-.|.+.|+++.|....
T Consensus 1305 ~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1305 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 776443 233445655555555 11111 112222 5677999999999999999998553
No 63
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.24 E-value=4.3e-08 Score=91.28 Aligned_cols=262 Identities=14% Similarity=0.078 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHhcCCC--CchhhHHHHHHHHHH----HhhccCcchhhHHh------HHHHHHHH
Q 045379 64 PTAQQILRFVQR----EVDSNTIWDAFDSLP--PTHATWDDLINVSVQ----LRLNKKWDPIVLMS------CVSILLIE 127 (352)
Q Consensus 64 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~------~~~~~li~ 127 (352)
..+..|..+|.. .+++++|...|++.. .++..+..+...|.. .++...+...++.. .++..|..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 366778888888 789999999998754 456677777777665 22222222222221 17788888
Q ss_pred HHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 128 AYGQ----KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCM----SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 128 ~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
.|.. .+++++|.+.|++..+.| +..++..+...|.. .+++++|...|++..+.| +...+..+-..|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 899999999999998864 66788888888887 889999999999998875 456777777778
Q ss_pred Hc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 200 LK----GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA-----SKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 200 ~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
.. .+++++|...|++..+.| +...+..|-..|... +++++|+..|++..+.| +...+..+-..|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 77 899999999999998765 567888888888887 89999999999998875 5667888888888
Q ss_pred hcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------HHHHH-hcCCCCCHHHHHHHHHHHHH--
Q 045379 271 REG---LCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR--------------LISRM-HMGCEPDRASYNIMVDAYGR-- 330 (352)
Q Consensus 271 ~~g---~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~--------------~~~~m-~~~~~p~~~~~~~li~a~~~-- 330 (352)
..| +.++|.++|++..+.| +...+..+-..|. .+++. +.+ +...+..|...|.+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 766 8899999999998874 4555555544443 55555 433 67888899999998
Q ss_pred --cCCcchhHHHHHH
Q 045379 331 --AGLHEGKCSYSLV 343 (352)
Q Consensus 331 --~g~~~~A~~~~~~ 343 (352)
.|+.++|.+.|..
T Consensus 414 g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 414 GVERDYVQAWAWFDT 428 (490)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 8999999999863
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=7.6e-10 Score=99.67 Aligned_cols=216 Identities=10% Similarity=-0.044 Sum_probs=157.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC----CCCHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY--GL----PPSAVVYN 193 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~----~~~~~~~~ 193 (352)
....+...|++++|.+.|++..+. +-.+ ...++..+...+...|++++|...+.+..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999763 1112 3458889999999999999999999988653 11 11246788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMALKLFNEMRSH----KC-KPNICTYT 263 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~~~t~~ 263 (352)
.+...|...|++++|...|++..+..- .++ ..+++.+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998765310 112 247888999999999999999999998762 33 33456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH---HHHHHHHH-------------HHHHHHhcCCC-CCHHHHHHHH
Q 045379 264 ALVNAFAREGLCEEAEEIFEQLQGAG-IEPDVYA---YNALMEAY-------------RLISRMHMGCE-PDRASYNIMV 325 (352)
Q Consensus 264 ~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~---~~~li~a~-------------~~~~~m~~~~~-p~~~~~~~li 325 (352)
.+...|.+.|++++|...+++..+.. -..+... +..+-..+ .+++.. +.. .....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 99999999999999999999886531 1112221 22222111 122222 222 2345678899
Q ss_pred HHHHHcCCcchhHHHHH
Q 045379 326 DAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 326 ~a~~~~g~~~~A~~~~~ 342 (352)
..|...|++++|.++|.
T Consensus 347 ~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 99999999999999986
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.7e-09 Score=84.83 Aligned_cols=164 Identities=11% Similarity=-0.039 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHH
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLPP-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTY 142 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~ 142 (352)
..+..+...+...|++++|...|++... ++.. ..++..+...+...|++++|.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----------------------VDVALHLGIAYVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-----------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-----------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567788899999999999999998752 1111 115667778889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 143 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
++..+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.
T Consensus 66 ~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 142 (186)
T 3as5_A 66 ERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PN 142 (186)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-cc
Confidence 99987542 467889999999999999999999999998763 4577889999999999999999999999998874 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
+..++..+...+...|++++|.+.+++..+.
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6889999999999999999999999988653
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=2.5e-09 Score=103.83 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
+..+|+.+-.++.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...|++..+.. +-+..+|+.+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35689999999999999999999999998863 4467899999999999999999999999998864 336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhc
Q 045379 233 LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHM 312 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~ 312 (352)
+|.+.|++++|++.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+. .|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~------------------- 143 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPD------------------- 143 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC-------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-------------------
Confidence 9999999999999999988753 335788999999999999999999999998864 233
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 313 GCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 313 ~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+...+..+..+|...|++++|.+.+.
T Consensus 144 ----~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 144 ----FPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp ----CHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred ----ChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 67888999999999999999999875
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=3.4e-09 Score=95.26 Aligned_cols=278 Identities=10% Similarity=-0.055 Sum_probs=186.8
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHhcCCC-------C--chhhHHHHHHHHH--HHhhccCcc---------hhhHHhH--
Q 045379 65 TAQQILRFV--QREVDSNTIWDAFDSLP-------P--THATWDDLINVSV--QLRLNKKWD---------PIVLMSC-- 120 (352)
Q Consensus 65 ~~~~l~~~~--~~~g~~~~A~~~~~~~~-------~--~~~~~~~l~~~~~--~~~~~~~~~---------~~~~~~~-- 120 (352)
+.+.|-..| .+.+++++|..+++++. . +...|-.++..-. ..+...... ..+....
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 667777788 78999999988887542 2 2333333333211 112222222 2222221
Q ss_pred -----------HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 045379 121 -----------VSILLIEAYGQKSLHKKAEFTYLELLDSRC-IPT----EDTYALLLKAYCMSGLLEKAEAVFREMRKY- 183 (352)
Q Consensus 121 -----------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 183 (352)
.|......+...|++++|...|.+..+.-. .++ ..++..+...|...|+++.|...+++..+.
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 233445567789999999999999875421 122 447888999999999999999999887652
Q ss_pred ---CC-C-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 184 ---GL-P-PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD----CCQ-PSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 184 ---g~-~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
+- . ....+++.+...|...|++++|...|++..+. +-. ....+++.+...|...|++++|++.|++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 1 12567888999999999999999999987652 111 12357888999999999999999999998761
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCH-HHHHHHHHHHH----------HHHHH-hcCC
Q 045379 254 ----KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI---EPDV-YAYNALMEAYR----------LISRM-HMGC 314 (352)
Q Consensus 254 ----g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~---~p~~-~~~~~li~a~~----------~~~~m-~~~~ 314 (352)
+.+....++..+...|.+.|++++|...+++..+..- .|.. ..+..+-..+. .+... ..+.
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 2233367889999999999999999999999876421 1222 22222211111 11111 1112
Q ss_pred -CCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 315 -EPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 315 -~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.....+..+...|...|++++|.++|.
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2234567788999999999999999986
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=1.4e-08 Score=88.67 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=144.7
Q ss_pred HccCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHH
Q 045379 130 GQKSLH-------KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS-AV-VYNSYIDGLL 200 (352)
Q Consensus 130 ~~~g~~-------~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~ 200 (352)
.+.|++ ++|..+|++..+.-.+-+...|..+...+.+.|++++|.++|++..+. .|+ .. .|..+...+.
T Consensus 68 ~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHH
T ss_pred hhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHH
Confidence 456775 999999999988422235679999999999999999999999999984 343 33 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY-GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
+.|++++|..+|++..+.. +++...|....... ...|++++|.++|++..+.. +-+...|..++..+.+.|++++|.
T Consensus 146 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998864 33455554443332 23799999999999987652 346788999999999999999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAG-IEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~-~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.+|++..+.. +.|+ -....|..++..+.+.|+.++|..++.
T Consensus 224 ~~~~~al~~~~l~p~----------------------~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 224 VLFERVLTSGSLPPE----------------------KSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHSSSSCGG----------------------GCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998752 3331 135566667777777777777777764
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=7.4e-09 Score=85.92 Aligned_cols=151 Identities=12% Similarity=-0.118 Sum_probs=127.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|......+.+.|++++|.+.|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 5666778899999999999999999987665788888889999999999999999999998864 345678899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPST-------ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN---ICTYTALVNAFA 270 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~li~~~~ 270 (352)
..|++++|...|++..+.. +.+. ..|..+-..+...|++++|++.|++..+. .|+ ...+..+...|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 9999999999999998863 2344 55888888999999999999999999875 455 567888888887
Q ss_pred hcCCH
Q 045379 271 REGLC 275 (352)
Q Consensus 271 ~~g~~ 275 (352)
..|+.
T Consensus 165 ~~~~~ 169 (228)
T 4i17_A 165 NNGAD 169 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 70
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=2e-08 Score=92.72 Aligned_cols=212 Identities=8% Similarity=-0.036 Sum_probs=114.2
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHH
Q 045379 61 VLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEF 140 (352)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 140 (352)
....++|.|...|...|+.++|++.|++.. ..+-..... ..-.....+|+.+...|...|++++|..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl----------~~~~~~~~~---~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAE----------ELIQQEHAD---QAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH----------HHHHHHSGG---GCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------HHHHhcCcc---ccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 335588999999999999999998887531 110000000 0001111156666666777777777776
Q ss_pred HHHHHHhC-----C-CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHcCCCHHHH
Q 045379 141 TYLELLDS-----R-CI-PTEDTYALLLKAYCMS--GLLEKAEAVFREMRKYGLPPSAVVYNSYIDG---LLKGGNPQKA 208 (352)
Q Consensus 141 l~~~m~~~-----~-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~a 208 (352)
.+++..+. + .. ....++.....++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 66655431 1 01 1234555544444443 35667777777666542 2233333333333 3344556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045379 209 VEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQ 284 (352)
Q Consensus 209 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 284 (352)
++.+++..+.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+.+
T Consensus 195 l~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 195 IDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 66666665542 2244455444444433 344566666666665432 33455666666777777777777777776
Q ss_pred HHHC
Q 045379 285 LQGA 288 (352)
Q Consensus 285 m~~~ 288 (352)
..+.
T Consensus 273 al~~ 276 (472)
T 4g1t_A 273 ALEY 276 (472)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=4.9e-10 Score=104.08 Aligned_cols=160 Identities=9% Similarity=-0.098 Sum_probs=139.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS---------GLLEKAEAVFREMRKYGLPPSAVV 191 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~ 191 (352)
+|..+...|.+.|++++|.+.|++..+.. |+...+..+..++... |++++|.+.+++..+.. +.+...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 77888889999999999999999999865 7788999999999999 99999999999998864 456788
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 045379 192 YNSYIDGLLKG--------GNPQKAVEIFQRMKRDCCQ---PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNIC 260 (352)
Q Consensus 192 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 260 (352)
|..+..+|... |++++|...|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +-+..
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~ 293 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 99999999998 99999999999998863 2 388999999999999999999999999998753 34567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
.+..+...+...|++++|.+.+.++
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999998876554
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=9e-10 Score=93.91 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=132.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS------RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY------G-LP 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~ 186 (352)
++..+...|...|++++|.+.|.+..+. +-.| ...++..+...+...|++++|...+++..+. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 7788889999999999999999988753 2222 3558888999999999999999999888754 1 23
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD------CCQP-STETYTLMINLYGKASKSFMALKLFNEMRSH------ 253 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------ 253 (352)
....++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|...+++..+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 34677888999999999999999999988764 1122 3567888999999999999999999887652
Q ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 254 ------------------------------------------KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 254 ------------------------------------------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..+....++..+...|...|++++|..++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112234688889999999999999999998865
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=8.3e-08 Score=90.26 Aligned_cols=281 Identities=11% Similarity=0.018 Sum_probs=175.4
Q ss_pred cCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHH-HHhhccCcch----hhHH-----------
Q 045379 58 IFPVLSPTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSV-QLRLNKKWDP----IVLM----------- 118 (352)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~~~~----~~~~----------- 118 (352)
.+|.........+..+.+.|++++|..+|++.. |++..|...+.... ..++.+.+.+ +++.
T Consensus 41 ~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 41 QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 367777788999999999999999999998753 67777776665332 2333333222 1111
Q ss_pred hHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HHcCCHHH----
Q 045379 119 SCVSILLIEAYGQ---------KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAY-------------CMSGLLEK---- 172 (352)
Q Consensus 119 ~~~~~~li~~~~~---------~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~-------------~~~g~~~~---- 172 (352)
...|...+....+ .|++++|.++|++..+....+....|....... .+.++++.
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~ 200 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHH
Confidence 1256666665544 678888888888887621111122332211100 01112222
Q ss_pred --------------------------------------------------------HHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 173 --------------------------------------------------------AEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 173 --------------------------------------------------------a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
+..+|++..+. .+.+...|....
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~ 279 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 23333333332 123455566666
Q ss_pred HHHHc-------CCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HH
Q 045379 197 DGLLK-------GGNPQ-------KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN--IC 260 (352)
Q Consensus 197 ~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ 260 (352)
..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ ..
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 357 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTL 357 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchH
Confidence 66554 68876 88888888876323446788888888888899999999999988875 444 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHH---------HHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAY--NALME---------AYRLISRMHMGCEPDRASYNIMVDAYG 329 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~--~~li~---------a~~~~~~m~~~~~p~~~~~~~li~a~~ 329 (352)
.|...+..+.+.|++++|.++|++..+..- .+...| .+.+. |..+|+..-...+-+...|..++..+.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 788888888888889999999988876521 122222 22221 222566552222446788888888888
Q ss_pred HcCCcchhHHHHH
Q 045379 330 RAGLHEGKCSYSL 342 (352)
Q Consensus 330 ~~g~~~~A~~~~~ 342 (352)
+.|+.++|..+|.
T Consensus 437 ~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 437 HLNEDNNTRVLFE 449 (530)
T ss_dssp TTTCHHHHHHHHH
T ss_pred hCCCHhhHHHHHH
Confidence 8999999988886
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=8e-09 Score=77.26 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=79.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...+...|++++|.++++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 355566666677777777777777665432 245566666666666777777777776666543 334555666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665542 22455555666666666666666666665544
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=2.3e-09 Score=96.47 Aligned_cols=216 Identities=8% Similarity=-0.037 Sum_probs=154.8
Q ss_pred HHHHHHhcCCHHHHHHHhcCC-------CC---chhhHHHHHHHHHHHhhccCcchhhHHh---------------HHHH
Q 045379 69 ILRFVQREVDSNTIWDAFDSL-------PP---THATWDDLINVSVQLRLNKKWDPIVLMS---------------CVSI 123 (352)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~ 123 (352)
....+...|++++|...|++. +. ....+..+...+...|+...+...+... .+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999998888653 21 2356777777777766665444433221 2788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GL-PPSAVVYN 193 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~ 193 (352)
.+...|...|++++|.+.|.+..+. +-.+ ...++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999887642 1111 1237888888999999999999999888762 33 44467788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 045379 194 SYIDGLLKGGNPQKAVEIFQRMKRD----CCQPSTETYTLMINLYGKASK---SFMALKLFNEMRSHKCKPN-ICTYTAL 265 (352)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~-~~t~~~l 265 (352)
.+...|.+.|++++|...+++..+. +-+.....++.+-..|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999887642 111123345678888888888 67777777765 22233 3467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045379 266 VNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 266 i~~~~~~g~~~~a~~l~~~m~~ 287 (352)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988764
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=9.8e-10 Score=99.56 Aligned_cols=225 Identities=15% Similarity=-0.037 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC----------CchhhHHHHHHHHHHHhhccCcchhhHHhH-------------
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP----------PTHATWDDLINVSVQLRLNKKWDPIVLMSC------------- 120 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------- 120 (352)
.++..+...|...|++++|...|++.. .....+..+...+...|+.+.+...+....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 367889999999999999988886542 234567777778877777766555443322
Q ss_pred -HHHHHHHHHHccCC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 045379 121 -VSILLIEAYGQKSL-----------------HKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVF 177 (352)
Q Consensus 121 -~~~~li~~~~~~g~-----------------~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 177 (352)
++..+...|...|+ +++|.+.+.+..+. +..| ...++..+...+...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 78889999999999 99999999887542 1112 2348888999999999999999999
Q ss_pred HHHHHCCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 178 REMRKYGL-----PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC--Q---PSTETYTLMINLYGKASKSFMALKLF 247 (352)
Q Consensus 178 ~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~l~ 247 (352)
++..+..- ......+..+...|...|++++|...|++..+... . ....++..+...|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98865311 11134788899999999999999999998765311 0 12567888999999999999999999
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 248 NEMRSH----KC-KPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 248 ~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
++.... +. .....++..+...|.+.|++++|.+.+++..+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 987653 11 112347888899999999999999999998753
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=1.1e-08 Score=76.44 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
..|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788889999999999999999998764 4567888899999999999999999999998764 44678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 235 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
...|++++|.+.++++.... +.+...+..+...+.+.|++++|...+.++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998753 346788999999999999999999999998754
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=5e-08 Score=87.21 Aligned_cols=257 Identities=13% Similarity=0.017 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcC----CCCc-hh----hHHHHHHHHHHHhhccCcchhhHHhH--------------HH
Q 045379 66 AQQILRFVQREVDSNTIWDAFDS----LPPT-HA----TWDDLINVSVQLRLNKKWDPIVLMSC--------------VS 122 (352)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~----~~~~-~~----~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~ 122 (352)
.......+...|++++|...+++ .+++ .. .++.+...+...|+.+.+...+.... ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455666788999999887654 2322 11 23334444444444443333332211 34
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHH
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDS----RCI--P-TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL----PPSAVV 191 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~ 191 (352)
+.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..- +....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55556666666666666666665431 111 2 123445555666666666666666666544211 112345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP--STETYT----LMINLYGKASKSFMALKLFNEMRSHKCKP---NICTY 262 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~a~~l~~~m~~~g~~p---~~~t~ 262 (352)
+..+...+...|++++|...+++.....-.+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 5556666666666666666666654321111 111111 12233556666666666666654432111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCcchhHHHH
Q 045379 263 TALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDR-ASYNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~-~~~~~li~a~~~~g~~~~A~~~~ 341 (352)
..+...+...|++++|...+++..+..- ..+..++. ..+..+..++...|+.++|.+.|
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~--------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENAR--------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555666666666666666666542100 11111122 25566777888888988888887
Q ss_pred H
Q 045379 342 L 342 (352)
Q Consensus 342 ~ 342 (352)
.
T Consensus 317 ~ 317 (373)
T 1hz4_A 317 L 317 (373)
T ss_dssp H
T ss_pred H
Confidence 5
No 79
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.09 E-value=6.6e-10 Score=97.05 Aligned_cols=225 Identities=13% Similarity=-0.033 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC----------CchhhHHHHHHHHHHHhhccCcchhhHHhH-------------
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP----------PTHATWDDLINVSVQLRLNKKWDPIVLMSC------------- 120 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------- 120 (352)
.++..+...|...|++++|...|++.. .....+..+...+...|+.+.+...+....
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 467889999999999999999887642 124567777777777777666555443322
Q ss_pred -HHHHHHHHHHccCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045379 121 -VSILLIEAYGQKSL--------------------HKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAE 174 (352)
Q Consensus 121 -~~~~li~~~~~~g~--------------------~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~ 174 (352)
++..+...+...|+ +++|.+.+++..+. +..| ...++..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 78888999999999 99999999877532 1112 2347888889999999999999
Q ss_pred HHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 045379 175 AVFREMRKY----GL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 175 ~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~ 244 (352)
..+++..+. +. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999987643 11 11234788889999999999999999998765311 111 567888999999999999999
Q ss_pred HHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 245 KLFNEMRSH----KCK-PNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 245 ~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..+++.... +-. ....++..+...|.+.|++++|...+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999987543 111 11447888999999999999999999998764
No 80
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.09 E-value=8.7e-10 Score=99.36 Aligned_cols=224 Identities=13% Similarity=-0.040 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC----------CchhhHHHHHHHHHHHhhccCcchhhHHhH-------------
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP----------PTHATWDDLINVSVQLRLNKKWDPIVLMSC------------- 120 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------- 120 (352)
.++..+...|...|++++|...|++.. .....+..+...+...|+.+.+...+....
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 467889999999999999998887541 124567777777877777666555443222
Q ss_pred -HHHHHHHHHHccCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045379 121 -VSILLIEAYGQKSL--------------------HKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAE 174 (352)
Q Consensus 121 -~~~~li~~~~~~g~--------------------~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~ 174 (352)
++..+...|...|+ +++|.+.+.+..+. +..| ...++..+...+...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 78889999999999 99999999877542 2112 2347888899999999999999
Q ss_pred HHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 045379 175 AVFREMRKY----GLP-PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 175 ~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~ 244 (352)
..+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999988653 111 1134788899999999999999999998765310 111 567888999999999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 245 KLFNEMRSH----KCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 245 ~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..+++..+. +-.+ ...++..+...|...|++++|.+.+++..+
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987653 1111 145788889999999999999999998764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=2.8e-08 Score=82.41 Aligned_cols=185 Identities=11% Similarity=0.004 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
.|+..+......+...|++++|...|++..+..-+++...+..+..++...|++++|...|++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788999999999999999999999999987644777888889999999999999999999998863 33567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNI-------CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD---VYAYNALM 301 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~~~~li 301 (352)
.+|...|++++|++.+++..+.. +.+. ..|..+-..+...|++++|.+.|++..+. .|+ ...+..+-
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998753 2234 45788888899999999999999999865 565 34444444
Q ss_pred HHHH-----HHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 302 EAYR-----LISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 302 ~a~~-----~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.++. .++.+..-...+...|.... ....|.+++|+.+|.
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4444 34555323344555555544 344566899998886
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=1.4e-08 Score=91.23 Aligned_cols=216 Identities=12% Similarity=0.022 Sum_probs=141.1
Q ss_pred HHHHHHhcCCHHHHHHHhcCCC------C----chhhHHHHHHHHHHHhhccCcchhhHH---------------hHHHH
Q 045379 69 ILRFVQREVDSNTIWDAFDSLP------P----THATWDDLINVSVQLRLNKKWDPIVLM---------------SCVSI 123 (352)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~ 123 (352)
....+...|++++|...|++.. + ....+..+..++...++...+...+.. ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445568899999988886532 1 234566666666666555443332221 12677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLPPSAVVYNS 194 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ 194 (352)
.+...|...|++++|.+.|.+..+. +..+ ...++..+..+|...|++++|...+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888888888888888888777642 1111 2346777788888888888888888877651 22333667778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDC----CQPSTETYTLMINLYGKASK---SFMALKLFNEMRSHKCKPN-ICTYTALV 266 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~-~~t~~~li 266 (352)
+...|.+.|++++|...+++..+.. -+.....++.+-..|...++ +++|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 8888888888888888888776531 12223456666667777777 66666666652 22222 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045379 267 NAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887753
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=2.7e-07 Score=79.50 Aligned_cols=204 Identities=16% Similarity=0.090 Sum_probs=142.9
Q ss_pred HhcCCHHHHHHHhcCCCC-chh-hHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 045379 74 QREVDSNTIWDAFDSLPP-THA-TWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCI 151 (352)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 151 (352)
.-.|.+..++.-..++.+ +.. .---+.+++...|+......-.........+.. |...+ |...|++..+.+ .
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~ 97 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-Q 97 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-C
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-C
Confidence 345888888776666542 211 222234667777765432211111112233333 33332 778888887665 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----CHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP-----STE 225 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~ 225 (352)
++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 6677777888999999999999999999876653 246788889999999999999999999999886 56 356
Q ss_pred HHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 226 TYTLMINLYG--KAS--KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 226 ~~~~li~~~~--~~g--~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+...|..++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666776633 334 899999999999765 46644455556689999999999999997654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.2e-08 Score=86.69 Aligned_cols=168 Identities=12% Similarity=0.045 Sum_probs=131.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS----RCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLPP-SAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 190 (352)
.|+.....|...|++++|.+.|.+..+. |-++. ..+|+.+..+|...|++++|...+++..+. |-.. ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677888999999999999887653 32222 468999999999999999999999887653 2111 145
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 045379 191 VYNSYIDGLLKG-GNPQKAVEIFQRMKRDCCQ-PS----TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI----- 259 (352)
Q Consensus 191 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----- 259 (352)
+++.+...|... |++++|...|++..+..-. .+ ..+++.+...+.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788999999996 9999999999987653110 01 357889999999999999999999999875432221
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 260 -CTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 260 -~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..|..+..++...|++++|...|++..+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 25778888999999999999999998753
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=6.9e-08 Score=83.52 Aligned_cols=204 Identities=11% Similarity=0.002 Sum_probs=145.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLE 144 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 144 (352)
.++.....|...|++++|...|++. +..+.+.++ ......+|+.+...|.+.|++++|+..|++
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~a----------l~~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKA----------ADYQKKAGN------EDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHH----------HHHHHHTTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HHHHHHhCC------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666677888889999888877643 122211111 111122788899999999999999999988
Q ss_pred HHhCC----CCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 145 LLDSR----CIP-TEDTYALLLKAYCMS-GLLEKAEAVFREMRKY----GLPPS-AVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 145 m~~~~----~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
..+.. -.+ -..+++.+..+|... |++++|...|++..+. +..+. ..+++.+...|.+.|++++|...|+
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 87532 111 145888999999996 9999999999998753 11111 3568889999999999999999999
Q ss_pred HHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHH
Q 045379 214 RMKRDCCQPST------ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNI------CTYTALVNAFA--REGLCEEAE 279 (352)
Q Consensus 214 ~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~t~~~li~~~~--~~g~~~~a~ 279 (352)
+..+....... ..+..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|.
T Consensus 183 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~ 260 (292)
T 1qqe_A 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHC 260 (292)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99886432221 26778888999999999999999998763 2332 23455666665 456788888
Q ss_pred HHHHHHH
Q 045379 280 EIFEQLQ 286 (352)
Q Consensus 280 ~l~~~m~ 286 (352)
..|+++.
T Consensus 261 ~~~~~~~ 267 (292)
T 1qqe_A 261 KEFDNFM 267 (292)
T ss_dssp HHHTTSS
T ss_pred HHhccCC
Confidence 8887764
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.97 E-value=1.5e-07 Score=88.57 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=131.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT-E-DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID- 197 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~- 197 (352)
.|..++..+.+.|++++|.++|++..+.. |+ . ..|...+..+.+.|++++|.++|++..+.. +.+...|-....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 66777788888999999999999999853 43 3 589999999999999999999999998763 223333332222
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCC
Q 045379 198 GLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK-CKPN--ICTYTALVNAFAREGL 274 (352)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~ 274 (352)
.+...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2346899999999999988763 3468899999999999999999999999998763 2332 4578888888889999
Q ss_pred HHHHHHHHHHHHHC
Q 045379 275 CEEAEEIFEQLQGA 288 (352)
Q Consensus 275 ~~~a~~l~~~m~~~ 288 (352)
.+.+..++.++.+.
T Consensus 479 ~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 479 LASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=1.4e-07 Score=81.31 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=136.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP-----SAVVYNS 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~ 194 (352)
+...+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 4456778888999999999999998776642 35668899999999999999999999999875 45 3555566
Q ss_pred HHHHHH----cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC----CCCHHH
Q 045379 195 YIDGLL----KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH-----KC----KPNICT 261 (352)
Q Consensus 195 li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~----~p~~~t 261 (352)
+..++. ..+++++|..+|+++.+. .|+..+-..+++++.+.|++++|++.++.+.+. +. +-+..+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 665532 244899999999999776 466455566666999999999999999976542 11 346667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q 045379 262 YTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM 310 (352)
Q Consensus 262 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m 310 (352)
...+|......|+ +|.+++.++.+. .|+......+-..-..|+++
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~~~k~~~Fd~~ 302 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHHQEIDAKFDEL 302 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHH
Confidence 7677777777787 899999999876 56654444444444455555
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=1.3e-07 Score=80.05 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=130.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP-T-EDTYALLLKAYCMSGLLEKAEAVFREMRKYG--LPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li 196 (352)
.+-.+...+.+.|++++|.+.|+++.+..... . ...+..+..++...|++++|...|++..+.. .+.....+..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 44556677889999999999999999765321 1 6788999999999999999999999998852 222356677788
Q ss_pred HHHHc--------CCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 197 DGLLK--------GGNPQKAVEIFQRMKRDCCQPSTETY-----------------TLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 197 ~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
.++.. .|++++|...|++..+.. +.+.... ..+...|.+.|++++|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888 999999999999998763 1122233 456788999999999999999998
Q ss_pred hCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 045379 252 SHKCK-P-NICTYTALVNAFARE----------GLCEEAEEIFEQLQGA 288 (352)
Q Consensus 252 ~~g~~-p-~~~t~~~li~~~~~~----------g~~~~a~~l~~~m~~~ 288 (352)
+..-. + ....+..+..+|... |++++|...|+++.+.
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 75211 1 245677888888866 8999999999999865
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.3e-07 Score=77.43 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=126.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYAL----------------LLKAYCMSGLLEKAEAVFREMRKYGLPP 187 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~~ 187 (352)
....+.+.|++++|...|++..+.. |+ ...|.. +..++.+.|++++|...|++..+.. +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3456778999999999999998754 43 446666 8889999999999999999998864 45
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHH--HHH
Q 045379 188 SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS--FMALKLFNEMRSHKCKPNIC--TYT 263 (352)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~--t~~ 263 (352)
+...+..+...|...|++++|...|++..+.. +.+..++..+...|...|+. +.+...++... .|+.. .+.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~ 161 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARY 161 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHH
Confidence 78899999999999999999999999998874 44678888888888766543 44555555543 34433 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045379 264 ALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300 (352)
Q Consensus 264 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~l 300 (352)
..-.++...|++++|...|++..+. .|+......+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4556677789999999999999864 6776554443
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=1.7e-07 Score=88.87 Aligned_cols=153 Identities=8% Similarity=-0.052 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
.|++++|.+.|++..+... -+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3667777777777765432 246677777777777788888888887777653 34566777777777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE---GLCEEAEEIFEQLQGA 288 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~l~~~m~~~ 288 (352)
|++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 87777653 3356677777777788888888888877776542 23456677777777777 7788888877777654
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=4.9e-07 Score=80.66 Aligned_cols=223 Identities=6% Similarity=-0.049 Sum_probs=157.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC------Cch----hhHHHHHHHHHHHhhccCcchhhHH----------------
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP------PTH----ATWDDLINVSVQLRLNKKWDPIVLM---------------- 118 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~l~~~~~~~~~~~~~~~~~~~---------------- 118 (352)
+.+.+...|...|++++|...+++.. .+. .++..+...+...|+...+...+..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 55777888889999999998887642 121 2244555566666665544433322
Q ss_pred hHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHH
Q 045379 119 SCVSILLIEAYGQKSLHKKAEFTYLELLDSRCI----PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP--SAVVY 192 (352)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~ 192 (352)
..++..+...+...|++++|.+.+++..+.... ....++..+...+...|++++|...+++.....-.+ .....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 115667888899999999999999988753221 134578888899999999999999999886531111 11222
Q ss_pred H----HHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-H
Q 045379 193 N----SYIDGLLKGGNPQKAVEIFQRMKRDCCQP---STETYTLMINLYGKASKSFMALKLFNEMRS----HKCKPNI-C 260 (352)
Q Consensus 193 ~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~~-~ 260 (352)
. ..+..+...|++++|...+++..+....+ ....+..+...+...|++++|...+++... .|..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 1 23345789999999999999887643211 133567788999999999999999988754 2322233 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.+..+..++...|+.++|...+.+..+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666777888999999999999998764
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=3.3e-07 Score=75.88 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=124.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLDSRCI-PT-EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-PSA-VVYNSYID 197 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~~~li~ 197 (352)
+..+...+.+.|++++|.+.|+++.+.... |. ...+..+..++.+.|++++|...|+++.+..-. +.. ..+-.+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 445567788999999999999999975432 22 468888999999999999999999999875321 111 23333344
Q ss_pred HHH------------------cCCCHHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHhcCCHH
Q 045379 198 GLL------------------KGGNPQKAVEIFQRMKRDCCQPS-TETY-----------------TLMINLYGKASKSF 241 (352)
Q Consensus 198 ~~~------------------~~g~~~~a~~~~~~m~~~~~~~~-~~~~-----------------~~li~~~~~~g~~~ 241 (352)
++. ..|++++|...|+++.+. .|+ ..++ -.+...|.+.|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 443 367899999999999876 233 2222 24556788999999
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 242 MALKLFNEMRSHKCKPN----ICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
+|+..|+++.+. -|+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 165 ~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 165 AVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999999875 243 2568889999999999999999999998763
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=8.7e-08 Score=76.14 Aligned_cols=161 Identities=9% Similarity=-0.005 Sum_probs=123.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG-LLK 201 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~ 201 (352)
..+...+.+.|++++|...|++..+... -+...+..+..++...|++++|...++...+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 4456778899999999999998876432 367789999999999999999999999886653 344433332211 222
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEE 280 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 280 (352)
.+....|...+++..+.. +-+...+..+...+...|++++|...|++..+..-.+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 233345788898888763 3368899999999999999999999999998764322 35689999999999999999999
Q ss_pred HHHHHHH
Q 045379 281 IFEQLQG 287 (352)
Q Consensus 281 l~~~m~~ 287 (352)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 94
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.76 E-value=2.5e-06 Score=78.56 Aligned_cols=265 Identities=12% Similarity=0.055 Sum_probs=181.2
Q ss_pred hHHHHHHHHHhcC-----CHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHH
Q 045379 65 TAQQILRFVQREV-----DSNTIWDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEA 128 (352)
Q Consensus 65 ~~~~l~~~~~~~g-----~~~~A~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~ 128 (352)
.+..|...+...| ++++|...|++.. .+...+..+...|...+........+.... .+..|...
T Consensus 71 A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 71 AQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLL 150 (452)
T ss_dssp CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5667777455554 7889998887653 455678888888887776555544444333 67777888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG---LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG--- 202 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 202 (352)
|...+.++++......+.+.-...++..+..+...|...| +.++|.+.|++..+.|. ++...+..+-..|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 8888865555554333332212233338888888999999 89999999999998874 5555556677777554
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 045379 203 -GNPQKAVEIFQRMKRDCCQPSTETYTLMINL-Y--GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG----- 273 (352)
Q Consensus 203 -g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g----- 273 (352)
+++++|...|++.. .| +...+..|-.. | ...+++++|++.|++..+.| +...+..|-..|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999987 43 55666666666 4 56899999999999998876 6777888888887 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------HHHHH-hcCCCCCHHHHHHHHHHHHH----cCCc
Q 045379 274 LCEEAEEIFEQLQGAGIEPDVYAYNALMEAYR--------------LISRM-HMGCEPDRASYNIMVDAYGR----AGLH 334 (352)
Q Consensus 274 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~--------------~~~~m-~~~~~p~~~~~~~li~a~~~----~g~~ 334 (352)
++++|.+.|++.. .| +......+-..|. .|+.. +.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 33 3444444433332 44444 433 33445566666654 4478
Q ss_pred chhHHHHHHHh
Q 045379 335 EGKCSYSLVEL 345 (352)
Q Consensus 335 ~~A~~~~~~~~ 345 (352)
++|..+|...-
T Consensus 375 ~~A~~~~~~A~ 385 (452)
T 3e4b_A 375 LNAYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876443
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=1.1e-07 Score=92.35 Aligned_cols=157 Identities=11% Similarity=-0.038 Sum_probs=134.7
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 130 GQKSLHKKAEFTYLELL--------DSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 322 3466789999999999999999999999998763 4567889999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045379 202 GGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEI 281 (352)
Q Consensus 202 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 281 (352)
.|++++|...|++..+.. +-+...+..+..+|.+.|++++ ++.|++..+.. +-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 3367889999999999999999 99999988753 34677899999999999999999999
Q ss_pred HHHHHHCCCCCC
Q 045379 282 FEQLQGAGIEPD 293 (352)
Q Consensus 282 ~~~m~~~~~~p~ 293 (352)
|++..+. .|+
T Consensus 557 ~~~al~l--~P~ 566 (681)
T 2pzi_A 557 LDEVPPT--SRH 566 (681)
T ss_dssp HHTSCTT--STT
T ss_pred HHhhccc--Ccc
Confidence 9988754 454
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=4.2e-07 Score=78.35 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL-M 230 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-l 230 (352)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344566667777777777888877777776653 345567777777777778888887777777654 344433222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q 045379 231 INLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRM 310 (352)
Q Consensus 231 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m 310 (352)
...+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+. .|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~----------------- 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLT----------------- 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccc-----------------
Confidence 233556666677777777766542 345667777777777778888887777777654 121
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 311 HMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 311 ~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
..+...+..++..|...|+.++|...|.
T Consensus 252 ----~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 252 ----AADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp ----GGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ----cccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 1125566777777777777777776654
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=2.5e-07 Score=79.78 Aligned_cols=162 Identities=12% Similarity=-0.004 Sum_probs=132.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYN-SYIDGL 199 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~ 199 (352)
.+..+...+.+.|++++|.+.|++..+... -+...+..+...+.+.|++++|...+++..... |+..... .....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHH
Confidence 566778889999999999999999987553 267789999999999999999999999987653 4443333 233346
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCK-PNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a 278 (352)
.+.++.++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+..-. .+...+..+...+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 67788888999999988764 457889999999999999999999999999876321 1267899999999999999999
Q ss_pred HHHHHHHH
Q 045379 279 EEIFEQLQ 286 (352)
Q Consensus 279 ~~l~~~m~ 286 (352)
...|++..
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=6.4e-07 Score=75.79 Aligned_cols=134 Identities=15% Similarity=0.111 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCCHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS---AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC--QPSTET 226 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~ 226 (352)
.+...+......+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+..- +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 466788888899999999999999999998863 223 67888899999999999999999999988621 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHH
Q 045379 227 YTLMINLYGK--------ASKSFMALKLFNEMRSHKCKPN-ICTY-----------------TALVNAFAREGLCEEAEE 280 (352)
Q Consensus 227 ~~~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~-~~t~-----------------~~li~~~~~~g~~~~a~~ 280 (352)
+..+..++.. .|++++|+..|++..+.. |+ .... ..+...|.+.|++++|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7788888888 999999999999998752 32 2222 556788999999999999
Q ss_pred HHHHHHHC
Q 045379 281 IFEQLQGA 288 (352)
Q Consensus 281 l~~~m~~~ 288 (352)
.|+++.+.
T Consensus 170 ~~~~~l~~ 177 (261)
T 3qky_A 170 TYEAVFDA 177 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=4.3e-07 Score=78.44 Aligned_cols=167 Identities=9% Similarity=-0.065 Sum_probs=127.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRC-IPTED----TYALLLKAYCMSGLLEKAEAVFREMRKYGLP-PS----AV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~ 190 (352)
.+...+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...+++..+.... ++ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344457788999999999999999986432 23322 3334666777788999999999999874322 22 34
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----c-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-H
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKR----D-CCQP-STETYTLMINLYGKASKSFMALKLFNEMRS----HKCKPN-I 259 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~ 259 (352)
+++.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|.+.+++..+ .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 799999999999999999999999874 1 1112 234788999999999999999999988754 232333 5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 045379 260 CTYTALVNAFAREG-LCEEAEEIFEQLQG 287 (352)
Q Consensus 260 ~t~~~li~~~~~~g-~~~~a~~l~~~m~~ 287 (352)
.+|..+..+|.+.| .+++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78999999999999 47999999988753
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.1e-06 Score=71.54 Aligned_cols=128 Identities=13% Similarity=-0.059 Sum_probs=101.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+...|++++|.+.|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677888899999999888774 4688889999999999999999999998887764 456778888888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQ--------------P-STETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
..|++++|...|++..+..-. | ....+..+..+|...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999888774211 1 2267788888888888888888888888765
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=1.6e-06 Score=70.64 Aligned_cols=129 Identities=14% Similarity=-0.038 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+..+...+...|++++|...|++. +.|+...+..+...|...|++++|...|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556677888999999999999877 46688999999999999999999999999988764 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045379 236 KASKSFMALKLFNEMRSHKCK--------------P-NICTYTALVNAFAREGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 289 (352)
..|++++|++.|++..+..-. | ....+..+..+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999875311 1 23678899999999999999999999998763
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=6.2e-07 Score=71.12 Aligned_cols=161 Identities=7% Similarity=0.011 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
....+...+...|++++|...|++.. .++.... .|..+...+.+.|++++|.+.|+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------------a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-----------------------VKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-----------------------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 45567778889999999999999875 1111111 55667778889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 144 ELLDSRCIPTEDTYALLLKA-YCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
...... |+...+...... +...+....|...+++..+.. +.+...+..+...+...|++++|...|++..+..-.+
T Consensus 65 ~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 65 TIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp TCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred Hhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 887654 354433332222 223333445788888887753 3467889999999999999999999999998874322
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 223 -STETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 223 -~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
+...+..+...+...|+.++|...|++..
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 35689999999999999999999998765
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=5.2e-06 Score=68.00 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC----CHHHHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG----NPQKAVEI 211 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~ 211 (352)
.+|.+.|.+..+.| ++.++..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 78889999999999999999999999999876 55777788888887 6 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCK-PNICTYTALVNAFAR----EGLCEEAEEIF 282 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~l~ 282 (352)
|++..+.| +..++..|-..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 67788888888887 89999999999999887521 126788888889988 88999999999
Q ss_pred HHHHHC
Q 045379 283 EQLQGA 288 (352)
Q Consensus 283 ~~m~~~ 288 (352)
++..+.
T Consensus 153 ~~A~~~ 158 (212)
T 3rjv_A 153 KGSSSL 158 (212)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999876
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=1e-07 Score=73.71 Aligned_cols=144 Identities=12% Similarity=-0.075 Sum_probs=103.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPT-EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 204 (352)
...+...|++++|+..+....... |+ ...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 345566788888888888776532 32 3356678888889999999999998888763 4567888888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKL-FNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l-~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+++|...|++..+.. +-+..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999998888763 33577888888888888888766554 46665542 2355666666666666554
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=2.5e-06 Score=73.61 Aligned_cols=166 Identities=9% Similarity=-0.044 Sum_probs=126.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTE-----DTYALLLKAYCMSGLLEKAEAVFREMRKYGL---PPS--AV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~--~~ 190 (352)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 5566778899999999999999988865432211 2344456667788999999999999875421 222 45
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPS-----TETYTLMINLYGKASKSFMALKLFNEMRSH----KCKPN-I 259 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~ 259 (352)
+++.+...|...|++++|...|++..+. ...|+ ..+++.+...|...|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999988731 00122 268899999999999999999999987542 21222 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045379 260 CTYTALVNAFAREGLCEEA-EEIFEQLQ 286 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a-~~l~~~m~ 286 (352)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77787765
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=3e-06 Score=69.41 Aligned_cols=161 Identities=15% Similarity=0.073 Sum_probs=133.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG----LLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
++..|...|...+++++|.+.|++..+.| ++..+..+-..|.. + ++++|.+.|++..+.| +...+..|-
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 56677778888999999999999999875 67788888888887 6 8999999999998876 567788888
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045379 197 DGLLK----GGNPQKAVEIFQRMKRDCCQ-PSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKCKPNICTYTALVN 267 (352)
Q Consensus 197 ~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~ 267 (352)
..|.. .+++++|...|++..+.|.. .+..++..|-..|.. .+++++|+..|++..+. ..+...+..|-.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 88887 88999999999999987521 127888899999988 88999999999999876 234556777777
Q ss_pred HHHhc-C-----CHHHHHHHHHHHHHCCC
Q 045379 268 AFARE-G-----LCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 268 ~~~~~-g-----~~~~a~~l~~~m~~~~~ 290 (352)
.|... | +.++|...|++..+.|.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77654 3 89999999999988774
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=3.8e-07 Score=73.65 Aligned_cols=157 Identities=13% Similarity=0.027 Sum_probs=116.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCC
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLP-PSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 204 (352)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 22235668999999999999999999999988752 222 235678888899999999
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 045379 205 PQKAVEIFQRMKRD----CCQP--STETYTLMINLYGKASKSFMALKLFNEMRSH----KCKP-NICTYTALVNAFAREG 273 (352)
Q Consensus 205 ~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g 273 (352)
+++|...+++..+. +-.| ...++..+...+...|++++|...+++.... +..+ -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987653 2111 2456788899999999999999999987542 2111 1234678888999999
Q ss_pred CHHHHHHHHHHHHH
Q 045379 274 LCEEAEEIFEQLQG 287 (352)
Q Consensus 274 ~~~~a~~l~~~m~~ 287 (352)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=1.5e-06 Score=71.89 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCH-HHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-PP-SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ-PST-ETYT 228 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~-~~~~ 228 (352)
+...+..+...+.+.|++++|...|+++.+..- .| ....+..+..+|.+.|++++|...|+++.+..-. +.. .++-
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455667777889999999999999999987532 12 2467788899999999999999999999876321 111 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhc
Q 045379 229 LMINLYGK------------------ASKSFMALKLFNEMRSHKCKPNIC-TY-----------------TALVNAFARE 272 (352)
Q Consensus 229 ~li~~~~~------------------~g~~~~a~~l~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~ 272 (352)
.+..++.. .|++++|...|+++.+.. |+.. .+ ..+...|.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444443 678999999999998752 3321 11 2445678889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHH
Q 045379 273 GLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLV 343 (352)
Q Consensus 273 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~ 343 (352)
|++++|...|+++.+. .|+. +.....+..+..+|.+.|++++|.+.+..
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~--------------------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDT--------------------QATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTS--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH--CcCC--------------------CccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999998764 2220 00135678899999999999999999873
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=1.5e-06 Score=82.46 Aligned_cols=131 Identities=10% Similarity=0.004 Sum_probs=113.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+.+.|++++|.+.|++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+...|.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 566777888889999999999999988653 367899999999999999999999999998863 456788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA---SKSFMALKLFNEMRSHK 254 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g 254 (352)
+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 103 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999999999999988764 34678899999999999 99999999999987754
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=1.7e-07 Score=90.86 Aligned_cols=148 Identities=10% Similarity=-0.018 Sum_probs=123.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+.+.|++++|.+.|++..+... -+...|..+..++...|++++|.+.|++..+.. +.+...+..+..+|.
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 567777888999999999999999987543 367799999999999999999999999998864 346788899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNAFAREGL 274 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 274 (352)
+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|++.|++..+. .|+ ...+..+..++...++
T Consensus 513 ~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999999 99999998864 346789999999999999999999999988765 455 5567777777766555
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=3.2e-06 Score=65.56 Aligned_cols=127 Identities=10% Similarity=-0.093 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+...|++++|.+.|.+..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 566667777777777777777777765432 245666666777777777777777777666542 334556666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTL--MINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~l~~~m 250 (352)
..|++++|...|++..+.. +.+...+.. +...+...|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666665542 123333322 222355556666666655543
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=3.4e-06 Score=65.46 Aligned_cols=130 Identities=14% Similarity=0.023 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3467778888999999999999999988763 4567889999999999999999999999988864 4468889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 045379 234 YGKASKSFMALKLFNEMRSHKCKPNICTYT--ALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+...|++++|...|++..+.. +.+...+. .....+.+.|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999988753 23444553 34444778899999999998764
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=4e-07 Score=70.29 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=108.6
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045379 69 ILRFVQREVDSNTIWDAFDSLPP-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLD 147 (352)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 147 (352)
|-.++...|++++|+..+++..+ ++.... .+-.+...|.+.|++++|.+.|++..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----------------------~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI-----------------------KGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT-----------------------THHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH-----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456678899999888876532 111100 345567889999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHcCCCCCHHH
Q 045379 148 SRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEI-FQRMKRDCCQPSTET 226 (352)
Q Consensus 148 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~ 226 (352)
... -+..+|..+..++...|++++|...|++..+.. +-+...+..+...|.+.|++++|... +++..+.. +-+..+
T Consensus 60 ~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~ 136 (150)
T 4ga2_A 60 VQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAV 136 (150)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHH
Confidence 653 367899999999999999999999999998863 34678899999999999999876655 57777653 346777
Q ss_pred HHHHHHHHHhcCC
Q 045379 227 YTLMINLYGKASK 239 (352)
Q Consensus 227 ~~~li~~~~~~g~ 239 (352)
|+.....+...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 8777777666664
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=2.1e-06 Score=70.13 Aligned_cols=182 Identities=12% Similarity=-0.035 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCHHHHHHHhcCCC---C-chhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHH
Q 045379 68 QILRFVQREVDSNTIWDAFDSLP---P-THATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYL 143 (352)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 143 (352)
.....+...|++++|...|++.. | +...|.. .+ ....... ....++.+...|.+.|++++|...|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------~~-~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW-------TN-VDKNSEI--SSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH-------HH-SCTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-------hh-hcchhhh--hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455678999999999998753 2 2222211 01 1111111 11144568889999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCC
Q 045379 144 ELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN--PQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 144 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 221 (352)
+..+..+ -+...+..+..++...|++++|...|++..+.. +.+..++..+...|...|. .+.+...++.... ..
T Consensus 79 ~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~ 154 (208)
T 3urz_A 79 ELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PT 154 (208)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CC
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CC
Confidence 9998653 367899999999999999999999999998864 4567888888888766654 3455666665542 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 045379 222 PSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTAL 265 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 265 (352)
|....+...-.++...|++++|+..|++..+. .|+......+
T Consensus 155 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 22234444566677789999999999999875 6776544443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=1e-06 Score=76.71 Aligned_cols=165 Identities=13% Similarity=0.022 Sum_probs=124.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLPP-SAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 190 (352)
.|+.....|...|++++|.+.|.+..+. +-.+ -..+|+.+..+|...|++++|...|++..+. |-.. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6677778888999999999999887642 1111 1348888899999999999999999887543 2111 245
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD----CCQP-STETYTLMINLYGKASKSFMALKLFNEMRSH----KCKPN-IC 260 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ 260 (352)
+++.+...|.. |++++|...|++..+. +-.+ ...+++.+...|.+.|++++|+..|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888888 9999999999987653 1110 1467888999999999999999999988652 22222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66777778888899999999999987
No 116
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.60 E-value=1.2e-05 Score=74.01 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhcCCHHHH---HHHhcCCC--CchhhHHHHHHHHHHHhhccCcchhhHHhH---------HHHHHHHHHH
Q 045379 65 TAQQILRFVQREVDSNTI---WDAFDSLP--PTHATWDDLINVSVQLRLNKKWDPIVLMSC---------VSILLIEAYG 130 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A---~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~li~~~~ 130 (352)
.+..|...|...+..+.+ .+.+.... .++..+..+...+...+............. ++..|...|.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~ 187 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ 187 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566777777766654443 23332221 345566666666666554333222211111 7888889999
Q ss_pred ccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--H
Q 045379 131 QKS---LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMS----GLLEKAEAVFREMRKYGLPPSAVVYNSYIDG-L--L 200 (352)
Q Consensus 131 ~~g---~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~ 200 (352)
+.| +.++|++.|+...+.|. ++...+..+...|... +++++|...|++.. .| +...+..+-.. | .
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~ 262 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFP 262 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSG
T ss_pred HcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCC
Confidence 999 99999999999998875 4666666777777554 69999999999988 44 44566666666 4 4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS-----KSFMALKLFNEMRSHKCKPNICTYTALVNAFAR---- 271 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~---- 271 (352)
..+++++|...|++..+.| +...+..|-..|. .| ++++|.+.|++.. . -+...+..|-..|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCC
Confidence 6899999999999999876 6778888888887 56 9999999999887 3 367778888877776
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 045379 272 EGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGL 333 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~ 333 (352)
..+.++|..+|++..+.|. |+. ...|-..|. -..|+++|...-......-+..|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~----~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFS----QGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHH----SCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHH----hCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4499999999999998775 222 111211111 023455565554445554455554
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=4.4e-06 Score=61.06 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345555555555555555555555554432 2334455555555555555555555555555432 22444555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 045379 235 GKASKSFMALKLFNEMRS 252 (352)
Q Consensus 235 ~~~g~~~~a~~l~~~m~~ 252 (352)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=1.2e-06 Score=76.29 Aligned_cols=202 Identities=11% Similarity=-0.049 Sum_probs=140.1
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (352)
+......++.....|...|++++|...|.+. +..+.+.+ .......+|+.+...|.+.|++++|
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~a----------l~~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A 95 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQE----------AEAHANNR------SLFHAAKAFEQAGMMLKDLQRMPEA 95 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------HHHHHHTT------CHHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHHHHHcC------CHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333446677788888999999998877643 22221111 1112223788888999999999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCCHHHH
Q 045379 139 EFTYLELLDS----RCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLPP-SAVVYNSYIDGLLKGGNPQKA 208 (352)
Q Consensus 139 ~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a 208 (352)
...|++..+. |-.+ -..++..+...|.. |++++|...|++..+. +..+ ...+++.+...|.+.|++++|
T Consensus 96 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 96 VQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887642 2111 23578888888888 9999999999987653 2111 146788899999999999999
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHH
Q 045379 209 VEIFQRMKRD----CCQPS-TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN------ICTYTALVNAFAREGLCEE 277 (352)
Q Consensus 209 ~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~t~~~li~~~~~~g~~~~ 277 (352)
...|++..+. +..+. ...+..+..++...|++++|...|++.. . .|+ ......++.++ ..|+.+.
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 9999988763 21111 2367777888888999999999999987 3 232 12345556655 5777766
Q ss_pred HHHH
Q 045379 278 AEEI 281 (352)
Q Consensus 278 a~~l 281 (352)
+.++
T Consensus 251 ~~~~ 254 (307)
T 2ifu_A 251 LLRV 254 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6663
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=4.2e-06 Score=61.22 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=94.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+|..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 677788899999999999999999987542 467889999999999999999999999998763 456788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK 236 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 236 (352)
..|++++|...|++..+.. +.+...+..+...+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999998763 3355666666555544
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=1e-05 Score=69.67 Aligned_cols=166 Identities=8% Similarity=-0.029 Sum_probs=123.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----HHH
Q 045379 157 YALLLKAYCMSGLLEKAEAVFREMRKYG-LPPSA----VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ-PS----TET 226 (352)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~ 226 (352)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|...|++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778899999999999999988743 22221 23445777777888999999999999873222 22 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRS----H-KCKPN-ICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYNAL 300 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~l 300 (352)
++.+...|...|++++|+..|++..+ . +..+. ..++..+...|.+.|++++|...+++..+..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~----------- 226 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS----------- 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999874 1 22222 2378899999999999999999999886420
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC-cchhHHHHH
Q 045379 301 MEAYRLISRMHMGCEP-DRASYNIMVDAYGRAGL-HEGKCSYSL 342 (352)
Q Consensus 301 i~a~~~~~~m~~~~~p-~~~~~~~li~a~~~~g~-~~~A~~~~~ 342 (352)
. ..+..+ -...|..+..+|.+.|+ +++|.+.|.
T Consensus 227 -------~--~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 227 -------C--RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp -------H--HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -------H--HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 0 111122 26778889999999995 599998875
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=1.3e-06 Score=70.51 Aligned_cols=121 Identities=12% Similarity=-0.102 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PT--------------EDTYALLLKAYCMSGLLEKAEAVFREMRKYGL 185 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 185 (352)
.+..+...+.+.|++++|.+.|.+..+.... |+ ...|..+..++...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 5666777888899999999999988864321 11 1445555555555555555555555554431
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 186 PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA 243 (352)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (352)
+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555555555555555544431 12334444444444444444333
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=1.5e-05 Score=68.63 Aligned_cols=168 Identities=8% Similarity=-0.032 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCC--H
Q 045379 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS-----AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDC---CQPS--T 224 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~ 224 (352)
..+...+..+...|++++|.+.+.+..+..-... ...+..+...+...|++++|...+++..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788999999999999998877532211 1234456667788999999999999987532 1222 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRS---H-KCKP--NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYAYN 298 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~-g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~ 298 (352)
.+++.+...|...|++++|+..|++..+ . +-.+ ...++..+...|.+.|++++|...+++..+..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--------- 226 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------- 226 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH---------
Confidence 5899999999999999999999998863 1 1111 12588999999999999999999999986421
Q ss_pred HHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcchh-HHHHH
Q 045379 299 ALMEAYRLISRMHMGCE-PDRASYNIMVDAYGRAGLHEGK-CSYSL 342 (352)
Q Consensus 299 ~li~a~~~~~~m~~~~~-p~~~~~~~li~a~~~~g~~~~A-~~~~~ 342 (352)
. ..+.. .-..+|..+..+|.+.|+.++| ..+|.
T Consensus 227 ---------~--~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 227 ---------C--RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp ---------H--HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---------H--hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0 00111 1256778888899999999999 66554
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=4.8e-06 Score=61.85 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44566666666667777777777776666542 2345666666666667777777777777666542 234566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 233 LYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
++...|++++|.+.|++..+.. +-+...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777776665432 112334444444444433
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=5.9e-06 Score=60.95 Aligned_cols=115 Identities=16% Similarity=0.028 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33444444444444444444444443321 2233444444444444444444444444444331 223444444444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 236 KASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
..|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555554444331 123334444444444333
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=7.4e-06 Score=61.04 Aligned_cols=96 Identities=11% Similarity=-0.090 Sum_probs=51.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|......|.+.|++++|++.|++..+... .+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 344445555556666666666655554332 244555555555555555555555555555432 233455555555555
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 045379 201 KGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~ 218 (352)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=8.6e-06 Score=60.03 Aligned_cols=117 Identities=10% Similarity=-0.079 Sum_probs=99.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 677888899999999999999999987542 367889999999999999999999999998763 446788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 240 (352)
..|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999988763 34677888888888777764
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=1.2e-05 Score=62.04 Aligned_cols=96 Identities=16% Similarity=0.027 Sum_probs=59.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+.+.|++++|.+.|++..+..+ -+...|..+..++...|++++|...|++..+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 344455556666677777777766665432 245566666666666666666666666666543 234456666666666
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 045379 201 KGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~ 218 (352)
+.|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=9.4e-06 Score=71.54 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..|..+..+|.+.|++++|...|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +-+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 566666666666777777777776666553 3356666666777777777777777777666542 23455666666666
Q ss_pred HhcCCHHHH-HHHHHHH
Q 045379 270 AREGLCEEA-EEIFEQL 285 (352)
Q Consensus 270 ~~~g~~~~a-~~l~~~m 285 (352)
.+.|+.++| ..+|..|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666766666 3344444
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=7.1e-06 Score=72.34 Aligned_cols=129 Identities=11% Similarity=-0.014 Sum_probs=111.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT--------------EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 186 (352)
.|..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|...+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 888899999999999999999999987553322 5899999999999999999999999998864 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMA-LKLFNEMR 251 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~l~~~m~ 251 (352)
.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ..+++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998864 34678899999999999999988 44566553
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=2.6e-06 Score=67.36 Aligned_cols=121 Identities=8% Similarity=0.066 Sum_probs=77.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCCH--H
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDG-LLKGGNP--Q 206 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 206 (352)
...|++++|...+....+... .+...|..+...+...|++++|...|++..+.. +.+...+..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777665432 356677777777777777777777777776543 2345566666666 6677776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
+|...|++..+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776653 234566667777777777777777777776654
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.44 E-value=1.3e-05 Score=59.61 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+...-..+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 55556666666667777766666666542 3455666666666666666666666666666543 234556666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 045379 236 KASKSFMALKLFNEMRSH 253 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~ 253 (352)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666553
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=2.9e-06 Score=68.33 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=101.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CCH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLD----SRCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLP--PSA 189 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~~~ 189 (352)
+++.+...+...|++++|.+.+++..+ .+..| ...++..+...+...|++++|...+++..+. +-. ...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 667778889999999999999998875 22222 3457888889999999999999999887653 211 124
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC-QPS----TETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..+..+...+...|++++|...+++..+..- ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5678888999999999999999998764210 112 23467888999999999999999887754
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=6.3e-06 Score=65.03 Aligned_cols=121 Identities=10% Similarity=0.101 Sum_probs=99.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 045379 165 CMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL-YGKASKS--F 241 (352)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 241 (352)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999887763 4577899999999999999999999999988763 3467788888888 8899998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+|...+++..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999998763 345778889999999999999999999999876
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=8.8e-06 Score=60.34 Aligned_cols=115 Identities=14% Similarity=-0.028 Sum_probs=95.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+.+.|++++|.+.|++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+...|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 677888899999999999999999987643 367899999999999999999999999998863 456788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999988763 224456666666666554
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=1.6e-05 Score=61.30 Aligned_cols=97 Identities=14% Similarity=0.007 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..+..+...+.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|+..|++..... +-+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 344455555556666666666666655542 2345555666666666666666666666655432 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 045379 270 AREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~~ 288 (352)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 136
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=6.8e-05 Score=64.87 Aligned_cols=218 Identities=8% Similarity=0.004 Sum_probs=158.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHh--hccCcchhhHHhH--------HHHHHHHHH---
Q 045379 67 QQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLR--LNKKWDPIVLMSC--------VSILLIEAY--- 129 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~--------~~~~li~~~--- 129 (352)
..+.....+....++|+.+++.+ |.+...|+.=..++...+ +.+.....+.... +|+.--..+
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 33344444444556888887765 356667887776666555 2222222222211 565544444
Q ss_pred -Hcc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 045379 130 -GQK---SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLE--KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203 (352)
Q Consensus 130 -~~~---g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 203 (352)
... +++++++++++.+.+...+ +..+|+--.-...+.|+++ ++++.++.+.+.. +-|-..|+.-...+.+.+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 444 7899999999999986653 8889988888888899988 9999999999875 457788887777777777
Q ss_pred C------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 045379 204 N------PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM-ALKLFNEMRSHK--CKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 204 ~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~ 274 (352)
+ ++++++.+++..+.. +-|...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 899999999988875 4588999999888888888544 555666655432 23577889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 045379 275 CEEAEEIFEQLQG 287 (352)
Q Consensus 275 ~~~a~~l~~~m~~ 287 (352)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=1.1e-06 Score=71.06 Aligned_cols=160 Identities=6% Similarity=-0.076 Sum_probs=102.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C---C-----------HH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP-P---S-----------AV 190 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~---~-----------~~ 190 (352)
+......|+++++.+.|+.-.+... .....+..+...+...|++++|...|++..+..-. | . ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3444555666666666653322111 13446777888899999999999999998874211 1 1 26
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFA 270 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 270 (352)
.+..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 78888888999999999999999888763 4467888888899999999999999999887652 335667777777777
Q ss_pred hcCCHHHHH-HHHHHHHHC
Q 045379 271 REGLCEEAE-EIFEQLQGA 288 (352)
Q Consensus 271 ~~g~~~~a~-~l~~~m~~~ 288 (352)
..++.+++. ..+..+...
T Consensus 168 ~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 777777666 555555443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=1.7e-05 Score=67.38 Aligned_cols=127 Identities=10% Similarity=-0.100 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS--TETYTLMINLYGK 236 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~ 236 (352)
.....+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...+.. .|. ...+..+-.++.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34444455555555555555544332 222233333334555555555555555433321 010 1244455555556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 237 ASKSFMALKLFNEMRSHKCKPN--ICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 237 ~g~~~~a~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666665553222132 224444555555566666666666665543
No 139
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.2e-05 Score=71.23 Aligned_cols=161 Identities=13% Similarity=0.063 Sum_probs=119.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPT----------------EDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSA 189 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~ 189 (352)
..+.+.|++++|.+.|....+...... ..++..+...|...|++++|.+.+.++.+. +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456788999999999999987543211 135788999999999999999999887653 111121
Q ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--C
Q 045379 190 ----VVYNSYIDGLLKGGNPQKAVEIFQRMKR----DCCQP-STETYTLMINLYGKASKSFMALKLFNEMRSH--KC--K 256 (352)
Q Consensus 190 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~--~ 256 (352)
.+.+.+-..+...|++++|..++++... .+..+ -..++..+...|...|++++|..++++.... +. +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233344445567899999999987654 22232 3567888999999999999999999987542 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 257 P-NICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 257 p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+ ...++..++..|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2 245788999999999999999999998764
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=4.9e-06 Score=63.94 Aligned_cols=94 Identities=11% Similarity=-0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444444455555555555555444432 2234444444444555555555555555444432 123344444444445
Q ss_pred hcCCHHHHHHHHHHHH
Q 045379 236 KASKSFMALKLFNEMR 251 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~ 251 (352)
..|++++|.+.|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555444443
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=5.6e-05 Score=54.39 Aligned_cols=25 Identities=12% Similarity=-0.002 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
.+..+..++...|++++|.+.+++.
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333344444444444444333
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=5.6e-06 Score=63.60 Aligned_cols=96 Identities=11% Similarity=-0.044 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..+..+...+...|++++|...|++..+.. +.+...|..+-.+|...|++++|+..|++..... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555556666666666666555442 2345555556666666666666666666655432 22344555555666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 045379 270 AREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 270 ~~~g~~~~a~~l~~~m~~ 287 (352)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665544
No 143
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=7.1e-06 Score=75.89 Aligned_cols=125 Identities=8% Similarity=-0.044 Sum_probs=69.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC---CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHH
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSR---CI---P-TEDTYALLLKAYCMSGLLEKAEAVFREMRKY-------GLPPSAVVY 192 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~---~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~ 192 (352)
..+..+|++++|+.++++.++.. +- | ...+++.|..+|..+|++++|+.++++..+. ..+....++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556777777777776665321 11 2 2336667777777777777777766665431 222334556
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMKR-------DCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
+.|...|..+|++++|+.++++..+ ..++....+.+.+-.++...+.+++|+.++..+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655432 1112222334445555555555555555555553
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=2.5e-05 Score=58.15 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=66.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG--LPPS----AVVYNS 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~~ 194 (352)
++..+...+.+.|++++|++.|++..+..+ -+...|..+..+|...|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 566677777778888888888877776432 246677777777777777777777777765431 1111 234555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETY 227 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 227 (352)
+-.++...|++++|.+.|++..+. .|+....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666666677777777777666553 3454433
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.2e-05 Score=56.48 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045379 158 ALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA 237 (352)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 237 (352)
..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 333334444444444444444433321 2233344444444444444444444444443331 11233444444444444
Q ss_pred CCHHHHHHHHHHH
Q 045379 238 SKSFMALKLFNEM 250 (352)
Q Consensus 238 g~~~~a~~l~~~m 250 (352)
|++++|...|++.
T Consensus 86 ~~~~~A~~~~~~a 98 (126)
T 3upv_A 86 KEYASALETLDAA 98 (126)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHH
Confidence 4444444444443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3.6e-05 Score=56.82 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045379 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNA 268 (352)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 268 (352)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567778888999999999999999988864 4478899999999999999999999999998763 3457789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 045379 269 FAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 269 ~~~~g~~~~a~~l~~~m~~~ 288 (352)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=7.7e-05 Score=53.62 Aligned_cols=107 Identities=12% Similarity=-0.080 Sum_probs=89.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+...|++++|.+.|+....... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 567788889999999999999999987543 367889999999999999999999999998763 446788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
..|++++|...+++..+.. +.+...+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999999999998763 2344444444
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=1.7e-05 Score=56.66 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP--NICTYTALVNA 268 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~t~~~li~~ 268 (352)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444555555555555555555555432 2244555555555556666666666665555432 12 34555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 045379 269 FARE-GLCEEAEEIFEQLQGA 288 (352)
Q Consensus 269 ~~~~-g~~~~a~~l~~~m~~~ 288 (352)
+.+. |++++|.+.+.+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666655543
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.25 E-value=0.001 Score=57.45 Aligned_cols=210 Identities=7% Similarity=-0.026 Sum_probs=133.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HcC
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG--LLEKAEAVFREMRKYGLPPSAVVYNSYIDGL----LKG 202 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~ 202 (352)
..+....++|+++++.+...+.. +...|+.--.++...| ++++++++++.+.... +-+..+|+.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33444446778877777764422 4456676666666677 7788888877777653 23334454433333 334
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 045379 203 ---GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF--MALKLFNEMRSHKCKPNICTYTALVNAFAREGL--- 274 (352)
Q Consensus 203 ---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 274 (352)
++++++..+++++.+.. +-+..+|+.-.-...+.|.++ ++++.++++.+.. .-|-..|+.-...+.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 67777888887777654 346777777666666777776 7777777777654 3355666666555556555
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------HHHHH-hc--CCCCCHHHHHHHHHHHHHcCCcchh
Q 045379 275 ---CEEAEEIFEQLQGAGIEPDVYAYNALMEAYR-----------LISRM-HM--GCEPDRASYNIMVDAYGRAGLHEGK 337 (352)
Q Consensus 275 ---~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~-----------~~~~m-~~--~~~p~~~~~~~li~a~~~~g~~~~A 337 (352)
++++++.+.++.... .-|...|+-+-..+. +.... .. .-+.+...+..+.++|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 777777777776542 234455544443332 22222 11 1245788899999999999999999
Q ss_pred HHHHHH
Q 045379 338 CSYSLV 343 (352)
Q Consensus 338 ~~~~~~ 343 (352)
.+++..
T Consensus 278 ~~~~~~ 283 (306)
T 3dra_A 278 RTVYDL 283 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
No 150
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=7.1e-06 Score=75.90 Aligned_cols=140 Identities=9% Similarity=-0.048 Sum_probs=106.0
Q ss_pred CCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045379 149 RCIPTEDTYALLLK----------AYCMSGLLEKAEAVFREMRKY-------GLPPSAVVYNSYIDGLLKGGNPQKAVEI 211 (352)
Q Consensus 149 ~~~p~~~~~~~li~----------~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (352)
+.+|+..++..++. .+..+|++++|+.++++..+. ..+....+++.|...|..+|++++|+.+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44466665554433 355789999999999887652 2233568899999999999999999999
Q ss_pred HHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHhcCCHHH
Q 045379 212 FQRMKRD-------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-----HK--CKPNICTYTALVNAFAREGLCEE 277 (352)
Q Consensus 212 ~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g--~~p~~~t~~~li~~~~~~g~~~~ 277 (352)
+++.++. .++-...+++.|...|...|++++|+.++++..+ .| .+....+.+.+-.++...+.+++
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9887642 2333457899999999999999999999988754 23 22233456777788889999999
Q ss_pred HHHHHHHHHHC
Q 045379 278 AEEIFEQLQGA 288 (352)
Q Consensus 278 a~~l~~~m~~~ 288 (352)
|+.+|.++++.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=1.8e-05 Score=67.82 Aligned_cols=96 Identities=14% Similarity=-0.122 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+.+.|++++|...|.+..+... .+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 456677888899999999999999887542 277889999999999999999999999988763 456788889999999
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 045379 201 KGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~ 218 (352)
..|++++|...|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=4.8e-05 Score=56.82 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555555555555555555555555555432 2334555555555555555555555555555432 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 045379 233 LYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~~m~ 251 (352)
+|...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555543
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=0.00011 Score=57.01 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINL 233 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 233 (352)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3345555555555555555555555555432 2244555555555555555555555555555442 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 045379 234 YGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~ 252 (352)
|...|++++|.+.|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=3.6e-05 Score=57.26 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHK--CKPN----ICTYTAL 265 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~t~~~l 265 (352)
+..+-..+.+.|++++|+..|++..+.. +-+...|+.+-.+|.+.|++++|++.+++..+.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555544432 2234455555555555555555555555543321 0111 1244555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045379 266 VNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 266 i~~~~~~g~~~~a~~l~~~m~~ 287 (352)
-.++...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555566666666666665544
No 155
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.23 E-value=8.1e-05 Score=71.58 Aligned_cols=213 Identities=12% Similarity=0.109 Sum_probs=154.1
Q ss_pred CCCchhhHHHHHHHHHHHhhccCcc-hhhHHhH--------HHHHHHHHHHccCCHHHHHHHHHHHHhCC---------C
Q 045379 89 LPPTHATWDDLINVSVQLRLNKKWD-PIVLMSC--------VSILLIEAYGQKSLHKKAEFTYLELLDSR---------C 150 (352)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~--------~~~~li~~~~~~g~~~~a~~l~~~m~~~~---------~ 150 (352)
.|.+...|-.........++...+. .+++... .|-..+...-+.|++++|.++|+.+.+.. .
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3567778888777777776655553 4444332 57778888888999999999999988631 0
Q ss_pred CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 045379 151 IPT------------EDTYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPSAVVYNSYIDGLLKG-GNPQKAVEIFQRMK 216 (352)
Q Consensus 151 ~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 216 (352)
.|+ ...|...+....+.|..+.|.++|....+. +. ++...|...+..-.+. ++.+.|.++|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 142 236888888888899999999999999876 21 1223343333333344 45899999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045379 217 RDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKP--NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV 294 (352)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 294 (352)
+. ++-+...|...+......|+.+.|..+|+........+ ....|...+..=.+.|+.+.+..+.+++.+. .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 76 45567777888888888999999999999988764222 3457888888888899999999999999876 4555
Q ss_pred HHHHHHHHHHH
Q 045379 295 YAYNALMEAYR 305 (352)
Q Consensus 295 ~~~~~li~a~~ 305 (352)
.....+++-|.
T Consensus 575 ~~~~~f~~ry~ 585 (679)
T 4e6h_A 575 NKLEEFTNKYK 585 (679)
T ss_dssp CHHHHHHHHTC
T ss_pred cHHHHHHHHhc
Confidence 55555566664
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.9e-05 Score=58.22 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGL--PPS----AVVYNS 194 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 194 (352)
.|..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566666777777777777777776543 23556666677777777777777777766655321 112 455566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLM 230 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 230 (352)
+...|...|++++|...|++..+. .|+......+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666666666666666666666654 2344444333
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=6.5e-05 Score=56.09 Aligned_cols=99 Identities=16% Similarity=0.022 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 266 (352)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666667777777777777777777766653 3356667777777777777777777777766543 23456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045379 267 NAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m~~ 287 (352)
.+|...|++++|...|.+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777776654
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=1.7e-05 Score=58.41 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC--QPS----TETYTL 229 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 229 (352)
.+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44445555555555555555555554432 23444455555555555555555555555443210 111 344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 045379 230 MINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
+..++...|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555554444
No 159
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1.8e-05 Score=60.58 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD----CCQP-STETYTLMINLYGKASKSFMALKLFNEMRSH----KCK-PNIC 260 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~ 260 (352)
++..+...|...|++++|...+++..+. +-++ ...++..+...+...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555544321 0000 1334555556666666666666666555321 111 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 261 TYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 261 t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666677777777777777776543
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1e-05 Score=62.00 Aligned_cols=132 Identities=13% Similarity=-0.056 Sum_probs=102.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-PT----EDTYALLLKAYCMSGLLEKAEAVFREMRKY----GLPP-SAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 190 (352)
++..+...+...|++++|.+.+.+..+.... ++ ..++..+...+...|++++|.+.+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 7788889999999999999999988753211 12 247888899999999999999999987653 1111 245
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRD----CCQ-PSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6788888999999999999999987643 111 1245678889999999999999999988754
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=3.8e-05 Score=58.25 Aligned_cols=95 Identities=11% Similarity=-0.098 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44444555555666666666666555442 2344555555555666666666666666555542 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 045379 236 KASKSFMALKLFNEMRS 252 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~ 252 (352)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666665555543
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=3.9e-05 Score=54.75 Aligned_cols=93 Identities=13% Similarity=-0.052 Sum_probs=46.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHc
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP--SAVVYNSYIDGLLK 201 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 201 (352)
.+...+.+.|++++|...|++..+... .+...+..+..++...|++++|.+.+++..+.. +. +...+..+...+.+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 344445555555555555555554321 234455555555555555555555555554432 12 34445555555555
Q ss_pred C-CCHHHHHHHHHHHHHc
Q 045379 202 G-GNPQKAVEIFQRMKRD 218 (352)
Q Consensus 202 ~-g~~~~a~~~~~~m~~~ 218 (352)
. |++++|.+.+++..+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CSSCSHHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHhhc
Confidence 5 5555555555555443
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.16 E-value=5.2e-05 Score=57.45 Aligned_cols=95 Identities=14% Similarity=-0.084 Sum_probs=45.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+.+.|++++|.+.|+....... .+...|..+..++...|++++|...|++..+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344444445555555555555555444322 234444455555555555555555555544432 223344444455555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~ 217 (352)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=0.00014 Score=54.84 Aligned_cols=95 Identities=15% Similarity=-0.133 Sum_probs=59.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT----EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
.+..+...+.+.|++++|.+.|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 45556666777777777777777776543 44 4566666666666677777766666665542 23455566666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
.+|...|++++|...|++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666554
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=0.00015 Score=54.57 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS----AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT 228 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 228 (352)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555555556666666666666655543 233 3445555555555555555555555554432 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 229 LMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
.+..++...|++++|.+.|++...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=7.7e-05 Score=57.94 Aligned_cols=95 Identities=16% Similarity=-0.029 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+.+.|++++|++.|++..+... -+...|..+..++...|++++|...+++..+.. +.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 455555555556666666666655554332 144555555555555666666666555555542 233455555555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~ 217 (352)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 56666666666555544
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=0.00021 Score=61.05 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045379 152 PTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMI 231 (352)
Q Consensus 152 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 231 (352)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356788888999999999999999999988763 3478889999999999999999999999988763 44678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 045379 232 NLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.07 E-value=6.3e-05 Score=63.89 Aligned_cols=184 Identities=5% Similarity=-0.084 Sum_probs=132.7
Q ss_pred hcCCHHHHHHHhcCC----CCchhhHHHH-------HHHHHHHhhccCcchhhH--------------------------
Q 045379 75 REVDSNTIWDAFDSL----PPTHATWDDL-------INVSVQLRLNKKWDPIVL-------------------------- 117 (352)
Q Consensus 75 ~~g~~~~A~~~~~~~----~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~-------------------------- 117 (352)
..++...|.+.|.+. |.....|+.+ ..++....+....-....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 579999999999876 3456678877 344444443322211110
Q ss_pred ---HhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHH
Q 045379 118 ---MSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS--AVVY 192 (352)
Q Consensus 118 ---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~ 192 (352)
.-..+-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 01145567788999999999999999988755 554466666678999999999999998554432 111 3467
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS--TETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYT 263 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 263 (352)
..+-.++...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 7888899999999999999999986543253 346777888999999999999999999886 45533333
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.07 E-value=0.00022 Score=68.60 Aligned_cols=165 Identities=10% Similarity=0.009 Sum_probs=107.6
Q ss_pred HHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC--
Q 045379 121 VSILLIEAYGQKSLHKKAE-FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG---------LPPS-- 188 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~-~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~~~-- 188 (352)
.|-..+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|+++.|.++|+.+.+.. ..|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 6666777777778777786 888777653 33456666777777777888888888888776531 0131
Q ss_pred ----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 045379 189 ----------AVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPSTETYTLMINLYGKA-SKSFMALKLFNEMRSHKCK 256 (352)
Q Consensus 189 ----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~ 256 (352)
..+|...+....+.|..+.|..+|.+..+. +. ++...|-.....-.+. ++.+.|.++|+...+. .+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 235666777777778888888888887765 21 1222332222222233 4578888888877664 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 257 PNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 257 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
-+...|...+......|+.+.|..+|++....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 35556667777777778888888888887754
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.00 E-value=9.1e-05 Score=54.52 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=48.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 195 YIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+...+.+.|++++|...|++..+.. +.+...|..+-.++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344555555555555555555442 2245555555555555666666666665555432 1234455555555556666
Q ss_pred HHHHHHHHHHHHH
Q 045379 275 CEEAEEIFEQLQG 287 (352)
Q Consensus 275 ~~~a~~l~~~m~~ 287 (352)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00036 Score=51.28 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=53.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPT--EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS---AVVYNSYIDGL 199 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~ 199 (352)
+...+.+.|++++|.+.|+...+...... ...+..+..++...|++++|...|++..+.. +.+ ...+..+..+|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455666777777777766665332111 1355556666666666666666666665542 112 44455566666
Q ss_pred HcCCCHHHHHHHHHHHHHc
Q 045379 200 LKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~ 218 (352)
...|++++|...|++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=0.00014 Score=53.56 Aligned_cols=92 Identities=9% Similarity=-0.073 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
.+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444555555555555555555432 2344555555555555666666666665555542 224455555555666666
Q ss_pred CHHHHHHHHHHHHh
Q 045379 239 KSFMALKLFNEMRS 252 (352)
Q Consensus 239 ~~~~a~~l~~~m~~ 252 (352)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=1.7e-05 Score=57.97 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 167 SGLLEKAEAVFREMRKYG--LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 167 ~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (352)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 12223444445555555555555555555554432 223444445555555555555555
Q ss_pred HHHHHHH
Q 045379 245 KLFNEMR 251 (352)
Q Consensus 245 ~l~~~m~ 251 (352)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=0.00014 Score=66.86 Aligned_cols=122 Identities=10% Similarity=-0.079 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT--------------EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLP 186 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 186 (352)
.|..+...+.+.|++++|...|.+..+...... ...|..+..++.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 788888999999999999999999886432211 4566666667777777777777777666543 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 187 PSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMAL 244 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (352)
.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666677777777777776666542 223445666666666666665554
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=0.00022 Score=65.51 Aligned_cols=132 Identities=11% Similarity=-0.041 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPS--------------AVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
....|..+...+.+.|++++|...|++..+..-... ...|..+..+|.+.|++++|...|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345788888999999999999999999887421111 588899999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 045379 219 CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEE-IFEQLQ 286 (352)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-l~~~m~ 286 (352)
. +.+...|..+-.+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.+ ++..|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4478899999999999999999999999998753 2344578888888888888887764 445443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=3.4e-05 Score=71.43 Aligned_cols=121 Identities=10% Similarity=-0.079 Sum_probs=96.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 204 (352)
+...+.+.|++++|.+.|++..+... -+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456788999999999999987542 358899999999999999999999999999874 4567889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINL--YGKASKSFMALKLFN 248 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~l~~ 248 (352)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988763 2234455555555 888899999999988
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00053 Score=50.35 Aligned_cols=92 Identities=10% Similarity=-0.029 Sum_probs=51.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 045379 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSA---VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS---TETYTLMINL 233 (352)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~ 233 (352)
+...+...|++++|...|++..+..- .+. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 34455566666666666666655321 111 355555566666666666666666665542 112 4455556666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 045379 234 YGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 234 ~~~~g~~~~a~~l~~~m~~~ 253 (352)
+...|++++|...|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665543
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.91 E-value=0.0015 Score=57.17 Aligned_cols=219 Identities=11% Similarity=0.010 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCC----CCchhhHHHHHHHHHHHhh-ccCcchhhHHhH--------HHHHHHHHHHcc-
Q 045379 67 QQILRFVQREVDSNTIWDAFDSL----PPTHATWDDLINVSVQLRL-NKKWDPIVLMSC--------VSILLIEAYGQK- 132 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~--------~~~~li~~~~~~- 132 (352)
+.+-....+.+..++|+++++++ |.+...|+.-..++...+. .++....+..+. +|+.-.-.+.+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 44444445566667888888765 3567778877777666552 222222222221 777766666665
Q ss_pred C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 045379 133 S-LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLE--------KAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG 203 (352)
Q Consensus 133 g-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 203 (352)
+ ++++++++++.+.+...+ |..+|+--.-...+.|.++ ++++.++++.+.. +-|...|+..-..+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 889999999999876543 7778877666666666666 8888999888875 457788888877777777
Q ss_pred C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC--
Q 045379 204 N-------PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS--------------------FMALKLFNEMRSHK-- 254 (352)
Q Consensus 204 ~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~l~~~m~~~g-- 254 (352)
+ ++++++.+++..... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6 688888888888764 44788888877777766654 23333333333221
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 255 ---CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 255 ---~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
-.++...+..++..|...|+.++|.++++.+.+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1367778899999999999999999999998643
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=3.8e-05 Score=71.07 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=94.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS 240 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 240 (352)
...+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+..++..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344667899999999999998863 4568899999999999999999999999998874 44688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045379 241 FMALKLFNEMRSHKCKPNICTYTALVNA--FAREGLCEEAEEIFE 283 (352)
Q Consensus 241 ~~a~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~l~~ 283 (352)
++|++.|++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999987753 1233345555444 888999999999988
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00023 Score=63.49 Aligned_cols=137 Identities=10% Similarity=-0.069 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.|..+...+.+.|++++|++.|++..+.- |+. ......+.+.+ . -+.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------L-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHHHH
Confidence 67778888888888888888888776510 000 00000000000 0 0112344555555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
+.|++++|...+++..+.. +.+...+..+..+|...|++++|++.|++..+.. +-+...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555432 2234455555555555555555555555554431 123444444445555555544443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00044 Score=62.56 Aligned_cols=207 Identities=10% Similarity=-0.055 Sum_probs=116.4
Q ss_pred HHHHHhcCCHHHHHHHhcCCC---Cc-hhhHHHHHHHHHHHhhccCcch-hhHHhHHHHHHHHHHHccCCHHHHHHHHHH
Q 045379 70 LRFVQREVDSNTIWDAFDSLP---PT-HATWDDLINVSVQLRLNKKWDP-IVLMSCVSILLIEAYGQKSLHKKAEFTYLE 144 (352)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 144 (352)
...+.+.|++++|.+.|..+. ++ ...... ...... .-....++..+...|.+.|++++|.+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG----------ASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS----------SSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH----------HHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455678899999988886542 11 000000 000000 000111456677777777888888777776
Q ss_pred HHhCC-CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045379 145 LLDSR-CIPTED----TYALLLKAYCMSGLLEKAEAVFREMRK----YGLPP-SAVVYNSYIDGLLKGGNPQKAVEIFQR 214 (352)
Q Consensus 145 m~~~~-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (352)
+...- -.++.. +.+.+-..+...|+++.+.+++..... .+..+ -..++..+...|...|++++|..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 65321 112221 222222333446777777777766543 22222 245666777777777888888777777
Q ss_pred HHHc--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 215 MKRD--CC---QPSTETYTLMINLYGKASKSFMALKLFNEMRS----HKCKPN--ICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 215 m~~~--~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
.... +. +....++..++..|...|++++|..++++... .+.+|. ...+..+...+...|++++|...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6542 11 11245677777777788888887777776543 121111 2345666666777777777777776
Q ss_pred HHH
Q 045379 284 QLQ 286 (352)
Q Consensus 284 ~m~ 286 (352)
+..
T Consensus 241 ~a~ 243 (434)
T 4b4t_Q 241 ESF 243 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00026 Score=63.09 Aligned_cols=127 Identities=11% Similarity=-0.050 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYG 235 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 235 (352)
.+..+...+.+.|++++|.+.|++..+.- ++ . ..... .++..+. -+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~---~-------~~~~~-------~~~~~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG---S-------RAAAE-------DADGAKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH---H-------HHHSC-------HHHHGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc---C-------ccccC-------hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45566667777777777777777665420 00 0 00000 1111111 0225678999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 045379 236 KASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP-DVYAYNALMEAYR 305 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~a~~ 305 (352)
+.|++++|++.+++..+.. +-+...|..+..+|...|++++|...|++..+. .| +...+..+-.++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQ 352 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 9999999999999998763 346788999999999999999999999999875 34 4455555554444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=3.9e-05 Score=55.98 Aligned_cols=85 Identities=22% Similarity=0.165 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045379 132 KSLHKKAEFTYLELLDSRC--IPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAV 209 (352)
Q Consensus 132 ~g~~~~a~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 209 (352)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4555666666666555431 1123355555556666666666666666655542 233455555555666666666666
Q ss_pred HHHHHHHH
Q 045379 210 EIFQRMKR 217 (352)
Q Consensus 210 ~~~~~m~~ 217 (352)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00044 Score=53.41 Aligned_cols=98 Identities=16% Similarity=0.011 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCC---------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 120 CVSILLIEAYGQKSLHKKAEFTYLELLDS-------RCI---------P-TEDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 120 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~---------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
..+......+.+.|++++|.+.|.+..+. .-+ | +...|..+..++.+.|++++|...+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 36677778888888888888888887653 000 1 123555555666666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 183 YGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 183 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 42 334555555666666666666666666655554
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.0018 Score=48.72 Aligned_cols=110 Identities=13% Similarity=-0.025 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 045379 169 LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMAL 244 (352)
Q Consensus 169 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 244 (352)
++++|.+.|++..+.|. |... +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45556666666555552 2222 4444445555566666666665543 45556666666655 56666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 045379 245 KLFNEMRSHKCKPNICTYTALVNAFAR----EGLCEEAEEIFEQLQGAG 289 (352)
Q Consensus 245 ~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 289 (352)
+.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666554 45556666666666 666666666666666654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00049 Score=53.11 Aligned_cols=63 Identities=19% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
..|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|.+..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455555666666666666666666655432 234555666666666666666666666665543
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.72 E-value=0.019 Score=50.26 Aligned_cols=215 Identities=12% Similarity=-0.030 Sum_probs=120.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG-LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK 201 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 201 (352)
+.+-....+.+..++|+++++.+...+.. +..+|+.--.++...| .+++++++++.+.+.. +-+..+|+.--..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333444455556677777777664432 4445666555555666 4677777777766653 3445555555444444
Q ss_pred C-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045379 202 G-G-NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF--------MALKLFNEMRSHKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 202 ~-g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 271 (352)
. + ++++++.+++++.+.. +-+..+|+.-.-...+.|.++ ++++.++++.+.. .-|...|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4 4 6667777777666553 235566655444444433343 6666666666543 2355566666655555
Q ss_pred cCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------------------------------HHHHH-hc-
Q 045379 272 EGL-------CEEAEEIFEQLQGAGIEPDVYAYNALMEAYR------------------------------LISRM-HM- 312 (352)
Q Consensus 272 ~g~-------~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~------------------------------~~~~m-~~- 312 (352)
.++ ++++++.+.+..... .-|...|+-+-..+. ....+ ..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 554 566666666655431 123333333221111 00001 00
Q ss_pred ----CCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 313 ----GCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 313 ----~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
.-.++......|++.|...|+.++|.+++.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 114678889999999999999999999986
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00019 Score=63.15 Aligned_cols=146 Identities=8% Similarity=-0.001 Sum_probs=83.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
.+..+...+.+.|++++|...|.+..... |+... +...|+.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 78888899999999999999999987632 44331 222333444332221 147788888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN-ICTYTALVNA-FAREGLCEEA 278 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~-~~~~g~~~~a 278 (352)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887763 346788888999999999999999999888654 343 3344444444 3345677788
Q ss_pred HHHHHHHHHC
Q 045379 279 EEIFEQLQGA 288 (352)
Q Consensus 279 ~~l~~~m~~~ 288 (352)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888654
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.00088 Score=50.44 Aligned_cols=114 Identities=12% Similarity=-0.087 Sum_probs=95.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK----GGNPQ 206 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~ 206 (352)
..+++++|.+.|++..+.|. |+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 34578999999999998873 4444 6666777778899999999999876 56788888888888 88999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 045379 207 KAVEIFQRMKRDCCQPSTETYTLMINLYGK----ASKSFMALKLFNEMRSHKC 255 (352)
Q Consensus 207 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~ 255 (352)
+|...|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998876 67888899999988 8999999999999988763
No 190
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.63 E-value=0.036 Score=51.22 Aligned_cols=265 Identities=13% Similarity=0.059 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhh-ccCcchhhHHh-----------HHHHHHHHH
Q 045379 64 PTAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRL-NKKWDPIVLMS-----------CVSILLIEA 128 (352)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-----------~~~~~li~~ 128 (352)
.++...+..+-. |+++.|..+|++.. |++..|...++...+.+. .+.+..+++.. ..|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 366777777655 88999999998643 788899988887766553 22233222221 267766665
Q ss_pred HH----ccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH-----------------------------------------
Q 045379 129 YG----QKSLHKKAEFTYLELLDSRCIPTED-TYALLLK----------------------------------------- 162 (352)
Q Consensus 129 ~~----~~g~~~~a~~l~~~m~~~~~~p~~~-~~~~li~----------------------------------------- 162 (352)
+. .+|+++.+.++|+......+ .+.. .|.....
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 44 24678889999998887311 1111 2211111
Q ss_pred ---HHHH--cCC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045379 163 ---AYCM--SGL---------LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT 228 (352)
Q Consensus 163 ---~~~~--~g~---------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 228 (352)
.|.. .++ .+.+..+|+++... ++.+...|-..+..+.+.|+.+.|..+|++.... +.+...|.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~ 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH
Confidence 0000 011 12334455555443 2344566666666677778888888888877776 33332222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---------CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSH---------KCK---PNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYA 296 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~---------g~~---p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 296 (352)
.|+...+.++. ++.+.+. +.. .....|...+....+.++.+.|..+|.+. +.. .++...
T Consensus 251 ----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v 321 (493)
T 2uy1_A 251 ----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHV 321 (493)
T ss_dssp ----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHH
T ss_pred ----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHH
Confidence 12221111111 1111110 000 01234555555555677788888888877 221 123333
Q ss_pred HH--HHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 297 YN--ALMEAY---------RLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 297 ~~--~li~a~---------~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
|. +.+... .+|+.....++-+...+...++-..+.|+.+.|..+|.
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 222221 15555522222234445556666667777777776664
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=0.00025 Score=62.36 Aligned_cols=114 Identities=16% Similarity=0.016 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 155 DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
..+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34666677778888999999988887664 233221 22334444443322 1 23788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 235 GKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 235 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988753 346789999999999999999999999998754
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.58 E-value=0.0011 Score=50.92 Aligned_cols=62 Identities=10% Similarity=-0.079 Sum_probs=39.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCI-P-----TE-----DTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
.+......+.+.|++++|++.|++..+.... | +. ..|..+-.++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555667778889999999999888764322 1 11 2555666666666666666666555544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00054 Score=48.72 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666666677777777777777665542 235566666777777777777777777776643
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.0022 Score=49.29 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLP-P-----SA-----VVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
.+......+.+.|++++|...|++..+..-. | +. ..|..+-.++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455556677778888888888777653211 1 11 1444444455555555555555544443
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.022 Score=53.73 Aligned_cols=178 Identities=10% Similarity=0.015 Sum_probs=137.3
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL----------LEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
......++|++.++++.+.... +..+|+.--.++...|+ ++++.++++.+.+.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445557889999999986542 56678777677777776 899999999998864 45778888888888
Q ss_pred HcCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 045379 200 LKGG--NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS-KSFMALKLFNEMRSHKCKPNICTYTALVNAFARE---- 272 (352)
Q Consensus 200 ~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~---- 272 (352)
.+.+ +++++.+.++++.+.. +-+..+|+.---...+.| .++++++.++++.+.. .-|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8999 7799999999999875 348889998888888888 8999999999998764 34777888877776663
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcch
Q 045379 273 ----------GLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEG 336 (352)
Q Consensus 273 ----------g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~ 336 (352)
+.++++++.+.+.... . +-|...|..+-..+.+.|+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~--~-----------------------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT--D-----------------------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH--C-----------------------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhh--C-----------------------CCCccHHHHHHHHHhcCCCccc
Confidence 4567777777776643 2 3377778888778887777655
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00087 Score=47.60 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455555666666666666666666665542 234556666666666666666666666666554
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.38 E-value=0.00061 Score=61.90 Aligned_cols=87 Identities=10% Similarity=-0.024 Sum_probs=69.3
Q ss_pred cCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRD-------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-----HK-CKPN-ICTYTALV 266 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~-~~t~~~li 266 (352)
..|++++|+.++++.++. .++....+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999987652 1222357899999999999999999999998754 23 1233 45799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045379 267 NAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m~~ 287 (352)
..|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00088 Score=60.87 Aligned_cols=90 Identities=7% Similarity=-0.108 Sum_probs=56.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC--CCCCHHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRD-------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-----HK--CKPNICTY 262 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g--~~p~~~t~ 262 (352)
..+.++|++++|+.++++..+. .++....+++.|..+|...|++++|+.++++... .| .+-...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455666777777777766542 1122345677777777777777777777776543 12 11223457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 263 TALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 263 ~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+.|...|..+|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777777777777777664
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00046 Score=62.75 Aligned_cols=87 Identities=7% Similarity=-0.101 Sum_probs=69.8
Q ss_pred HcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHH
Q 045379 166 MSGLLEKAEAVFREMRKY-------GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-----C--CQPSTETYTLMI 231 (352)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li 231 (352)
..|++++|+.++++..+. ..+....+++.|...|..+|++++|+.++++.++. | ++-...+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887652 22334688999999999999999999999987652 2 233456799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 045379 232 NLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0012 Score=59.95 Aligned_cols=97 Identities=11% Similarity=-0.084 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCC
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKY---GL----PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-------CCQ 221 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~ 221 (352)
.....+..+.++|++++|+.++++..+. -+ +....+++.+...|..+|++++|+.++++.++. .++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344466677889999999999988753 12 224678899999999999999999999987642 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 222 PSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
....+++.|...|...|++++|+.++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3356789999999999999999999998876
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.002 Score=46.35 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQ 286 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 286 (352)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444455555554444444321 1223344444444555555555555554443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.0061 Score=41.23 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
.+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444444444444443321 12233344444444444444444444444433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.26 E-value=0.0054 Score=41.47 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 190 VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666665542 2345566666666666666666666666665432 22344555555544
Q ss_pred Hh
Q 045379 270 AR 271 (352)
Q Consensus 270 ~~ 271 (352)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.25 E-value=0.084 Score=45.87 Aligned_cols=176 Identities=9% Similarity=-0.023 Sum_probs=83.2
Q ss_pred HhcCCHH-HHHHHhcCC----CCchhhHHHHHHHHHHHhhccC-------cch---hhHHhH--------HHHHHHHHHH
Q 045379 74 QREVDSN-TIWDAFDSL----PPTHATWDDLINVSVQLRLNKK-------WDP---IVLMSC--------VSILLIEAYG 130 (352)
Q Consensus 74 ~~~g~~~-~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~-------~~~---~~~~~~--------~~~~li~~~~ 130 (352)
.+.|+++ +|+.+++.+ |.+...|+.=-.++...+.... ..+ .+..+. +|+--.-.+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456555 677766654 3556677765555544443100 000 000000 4444444444
Q ss_pred ccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----
Q 045379 131 QKS--LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG----- 202 (352)
Q Consensus 131 ~~g--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----- 202 (352)
+.| ++++++.+++.+.+... -|..+|+--.-.....|. ++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 444 35566666666655443 255555555555555555 355556555555543 23444444433333322
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHh
Q 045379 203 ---------GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA-----------SKSFMALKLFNEMRS 252 (352)
Q Consensus 203 ---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~l~~~m~~ 252 (352)
+.++++.+.+.+..... +-|..+|+-+-..+.+. +.++++++.++++.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 23455555555555442 23455554433333333 234555555555554
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.22 E-value=0.09 Score=45.66 Aligned_cols=150 Identities=7% Similarity=-0.079 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-HHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG--LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN-PQKAVEI 211 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~ 211 (352)
+++++.+++.+....++ +..+|+.---.+...| .+++++++++.+.+.. +-|-..|+.--..+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777777777765443 6667777666666666 3778888888877764 4566677766666666776 5778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGKA--------------SKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE----- 272 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~----- 272 (352)
++++.+.. +-|..+|+.....+.+. +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 88877765 34677777665555444 34677777777776542 34555665444444333
Q ss_pred ------CCHHHHHHHHHHHHHC
Q 045379 273 ------GLCEEAEEIFEQLQGA 288 (352)
Q Consensus 273 ------g~~~~a~~l~~~m~~~ 288 (352)
+.++++++.++++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh
Confidence 3467777777777654
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0029 Score=45.45 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 138 AEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 138 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
|++.|++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444322 234455555555555555555555555554432 2234445555555555555555555555444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.97 E-value=0.0056 Score=42.87 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 188 SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666666655542 2234455556666666666666666655544
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.96 E-value=0.025 Score=53.34 Aligned_cols=139 Identities=6% Similarity=-0.092 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHH
Q 045379 135 HKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG--LLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGG-NPQKAVEI 211 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~ 211 (352)
++++++.++.+.+...+ +..+|+.---++.+.| +++++++.++++.+.. +-+...|+.--..+.+.| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 89999999999986654 7789998888888899 7799999999999875 457788888888888888 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045379 212 FQRMKRDCCQPSTETYTLMINLYGKA--------------SKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEE 277 (352)
Q Consensus 212 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 277 (352)
++++.+.. +-+..+|+.....+.+. +.++++++.+++..... +-|...|+-+-..+.+.++.++
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 99998875 34788998877776663 55789999998887653 3466778887777777666433
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.0062 Score=42.61 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666666666666666666665543 22345566666666666666666666665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.073 Score=46.71 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=82.8
Q ss_pred cCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCH
Q 045379 56 DGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLH 135 (352)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 135 (352)
+..+.+-..+...|+.+..-.-...+........|.+...|...+++.....+ ....+.
T Consensus 157 ~dlfalQdei~~~I~~aL~~~l~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~---------------------~~~~~~ 215 (372)
T 3ly7_A 157 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLH---------------------GDDKSL 215 (372)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHSCSSGGGHHHHHHHHHHHHH---------------------CSHHHH
T ss_pred HhHHHHHHHHHHHHHHHhCchhhHHHHHHHhccCCCCHHHHHHHHHHHHHHHc---------------------CCHHHH
Confidence 33344334455666666654444444555666677888888877776432211 122345
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH---cC-C-HHHHHH---HHHHHHH-CCCCCCHHHHHHHHHHHHcCCCH
Q 045379 136 KKAEFTYLELLDSRCIPT-EDTYALLLKAYCM---SG-L-LEKAEA---VFREMRK-YGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~---~g-~-~~~a~~---~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
.+|..+|++..+.. |+ ...|..+.-++.- .+ . ...... .+..... ...+.+..+|..+...+...|++
T Consensus 216 ~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 216 NRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 78999999998754 54 3455544444431 00 0 001111 0110000 11133444444444444444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
++|...+++....+ |+...|..+-..+.-.|++++|.+.+++...
T Consensus 294 d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 294 DESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555554443 4444444444444455555555555544443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.85 E-value=0.038 Score=54.14 Aligned_cols=98 Identities=8% Similarity=-0.112 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHH-HhcCCC-CchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 045379 72 FVQREVDSNTIWD-AFDSLP-PTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSR 149 (352)
Q Consensus 72 ~~~~~g~~~~A~~-~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 149 (352)
.....|++++|.+ ++..++ ++.. ..++..+.+.+..+.+.++.+.. ..-.....+.|++++|.++.+.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~~~~~--~~~~~~l~~~~~~~~a~~~~~~~---~~~f~~~l~~~~~~~A~~~~~~~---- 678 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEGKDSL--TKIARFLEGQEYYEEALNISPDQ---DQKFELALKVGQLTLARDLLTDE---- 678 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCCHHHH--HHHHHHHHHTTCHHHHHHHCCCH---HHHHHHHHHHTCHHHHHHHHTTC----
T ss_pred HHHHhCCHHHHHHHHHhcCCchHHH--HHHHHHHHhCCChHHheecCCCc---chheehhhhcCCHHHHHHHHHhh----
Confidence 3345788999888 775554 3211 33333333333222211111110 11122233445555555443322
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045379 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREM 180 (352)
Q Consensus 150 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (352)
.+...|..+...|.+.|+++.|++.|..+
T Consensus 679 --~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 --SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 24445555555555555555555555544
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.68 E-value=0.0049 Score=47.24 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 045379 167 SGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGN 204 (352)
Q Consensus 167 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 204 (352)
.+++++|.+.++...+.. +.+...|..+-.++...++
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 344555555555554432 2344444444444444443
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.65 E-value=0.0052 Score=47.09 Aligned_cols=41 Identities=7% Similarity=-0.108 Sum_probs=28.8
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 045379 130 GQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLE 171 (352)
Q Consensus 130 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 171 (352)
.+.+.+++|.+.++...+... -+...|..+-.++...++++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccc
Confidence 456677888888887776553 26677777777777777655
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.59 E-value=0.19 Score=46.41 Aligned_cols=152 Identities=12% Similarity=0.058 Sum_probs=83.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCC---C
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYG---------LPP---S 188 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~~---~ 188 (352)
.|-..+..+.+.|+.++|..+|++.... +.+...+. .|+...+.++. ++.+.+.- ..+ .
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccccc
Confidence 7888888888999999999999999876 33332222 22222111111 22222110 001 1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045379 189 AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT--LMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALV 266 (352)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 266 (352)
...|-..+....+.+.++.|..+|++. +.. ..+...|- +.+.... .++.+.|..+|+...+.. +-+...+...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yi 361 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 234555556555666777777777777 221 12333443 2222222 235777777777766532 11233455556
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 045379 267 NAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 267 ~~~~~~g~~~~a~~l~~~m 285 (352)
....+.|+.+.|..+|+.+
T Consensus 362 d~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666677777777777776
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.032 Score=54.63 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=87.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 123 ILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 123 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
..++..+.+.|.+++|+++.+. .. .-...+...|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5566666777777777655421 11 1123445678888888875442 4668899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIF 282 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 282 (352)
++++.|++.|.++.. |..+...|...|+.+...++-+.....|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988763 33455555557777776666666655542 344555666777888888777
Q ss_pred HHHH
Q 045379 283 EQLQ 286 (352)
Q Consensus 283 ~~m~ 286 (352)
.++.
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7664
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.30 E-value=0.24 Score=43.43 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CC-CHHHH---HHHHHHHH
Q 045379 150 CIPTEDTYALLLKAYC--MSGL---LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLK----GG-NPQKA---VEIFQRMK 216 (352)
Q Consensus 150 ~~p~~~~~~~li~~~~--~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g-~~~~a---~~~~~~m~ 216 (352)
.+.+...|...+.+.. ..++ ..+|..+|++..+.. |-....+..+..+|.. .+ .-... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4456777887776654 3333 578999999998863 2234555544444431 11 11111 11222211
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045379 217 R-DCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVY 295 (352)
Q Consensus 217 ~-~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 295 (352)
. ..-+.+..++..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|.+.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1225688889888888888899999999999999875 88888888888899999999999999998765 66666
Q ss_pred HHH
Q 045379 296 AYN 298 (352)
Q Consensus 296 ~~~ 298 (352)
||.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.20 E-value=0.019 Score=39.61 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTED-TYALLLKAYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (352)
...+.+.|++++|.+.|++..+... .+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455666777777777777665432 2445 6666666777777777777777776654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.3 Score=37.90 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=56.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 045379 128 AYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQK 207 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 207 (352)
...+.|+++.|.++.+++ -+...|..|-..+...|+++.|++.|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344566666666665544 3566666666666666666666666666422 2333334444555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
..++-+.-...| -+|.....+...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 544444333332 2444445555666777776666443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.10 E-value=0.02 Score=39.50 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=24.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 199 LLKGGNPQKAVEIFQRMKRDCCQPSTE-TYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555444432 12333 444444445555555555555554443
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.97 E-value=0.31 Score=35.92 Aligned_cols=139 Identities=15% Similarity=0.036 Sum_probs=83.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVE 210 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (352)
-.|.+++..++..+.... .+..-||-+|--....-+=+-..++++..-+ ..|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHH
Confidence 346666667777666653 2444455555444444444444444444322 1221 12344444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045379 211 IFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGI 290 (352)
Q Consensus 211 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 290 (352)
.+-.+-. +..-.+..++....+|+-++-.++..++.. +-+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4433321 444567777888888888888888888543 3467777888888888888888888888888888776
Q ss_pred C
Q 045379 291 E 291 (352)
Q Consensus 291 ~ 291 (352)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.28 E-value=0.17 Score=35.46 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 153 TEDTYALLLKAYCMSGLLEKAEAVFREMRKYG------LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
+..-+..+...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455555566666666666666665554320 1233455555666666666666666666655543
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.01 E-value=0.23 Score=34.12 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 188 SAVVYNSYIDGLLKGGN---PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 188 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
+...+..+..++...++ .++|..++++..+.. +-+..+...+-..+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 455555555555442 224455555555555555555555555555543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.91 E-value=0.41 Score=36.17 Aligned_cols=64 Identities=14% Similarity=-0.064 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 223 STETYTLMINLYGKAS---KSFMALKLFNEMRSHKCKP--NICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+..+.-.+--++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334444444444332 12 122333333344455555555555554443
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.84 E-value=0.33 Score=41.03 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CCH
Q 045379 135 HKKAEFTYLELLDSRCIPT---EDTYALLLKAYCMS-----GLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG-GNP 205 (352)
Q Consensus 135 ~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 205 (352)
...|..++++..+.. |+ ...|..+...|... |+.+.|.+.|++..+..-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456677777776633 55 45778888888884 88888888888888753222467777888888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQ--PSTETYTLM 230 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~--~~~~~~~~l 230 (352)
+++.+.+++....... |+....|.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8888888888887555 555544444
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.69 E-value=1.1 Score=34.66 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSF 241 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 241 (352)
......|+++.|.++.+++ .+...|..|-......|+++-|++.|.+... +..+.--|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455678888888887765 3567888888888888888888888888763 334555566667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 242 MALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 242 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
...++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66666555554441 555555666677777777776543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.65 E-value=0.28 Score=34.30 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 223 STETYTLMINLYGKASKSFMALKLFNEMRSH------KCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+...+-.|-..+.+.|+++.|...|+...+. .-.+....+..+..+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444555555666666666666666554331 0123344566666666666666666666666654
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.27 E-value=0.91 Score=34.26 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 173 AEAVFREMRKYGLPPSAVVYNSYIDGLLKGG---NPQKAVEIFQRMKRDCCQP--STETYTLMINLYGKASKSFMALKLF 247 (352)
Q Consensus 173 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~ 247 (352)
+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..+|++..+.. .| ....+-.|--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3334444334333 44455555555555555 3445666666555542 12 2333444445556666666666666
Q ss_pred HHHHhC
Q 045379 248 NEMRSH 253 (352)
Q Consensus 248 ~~m~~~ 253 (352)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.20 E-value=0.85 Score=31.14 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 221 QPSTETYTLMINLYGKASK---SFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
+.+...+..+..++...++ .++|..++++..+.. +-+......+-..+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4577777787777765555 799999999998763 345677888889999999999999999999876
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.87 E-value=0.65 Score=39.21 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 045379 205 PQKAVEIFQRMKRDCCQPS---TETYTLMINLYGKA-----SKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE-GLC 275 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~ 275 (352)
...|...+++..+. .|+ -..|..|...|.+. |+.++|.+.|++..+.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 455 45788888888884 88999999999888753211367777778888774 889
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 045379 276 EEAEEIFEQLQGAGIE--PDVYAYNALM 301 (352)
Q Consensus 276 ~~a~~l~~~m~~~~~~--p~~~~~~~li 301 (352)
+++.+.+++....... |+....+.+-
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999988887655 6655555443
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.29 E-value=1.1 Score=33.04 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC 220 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 220 (352)
.......++....+|+-|+-.+++..+.. ..+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555555333 2234445555555555555555555555555555543
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.95 E-value=0.55 Score=41.74 Aligned_cols=127 Identities=11% Similarity=0.032 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHC--CCC-CCHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHcCCCCCHH
Q 045379 153 TEDTYALLLKAYC---MSGLLEKAEAVFREMRKY--GLP-PSAVVYNSYIDGLLKGGNPQKA-VEIFQRMKRDCCQPSTE 225 (352)
Q Consensus 153 ~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~~~~~~~~ 225 (352)
|...|..++.... ..|+.+.+.+.+.+.... |-. ++.. ...|-.+ ..-++++. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 4455555554432 357888888888877653 211 1110 0122111 12222222 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG-----AGIEPDVYAYN 298 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~~~ 298 (352)
+...++..+...|++++|...+..+... .+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4556777788888888888888777654 256777888888888888888888888887653 38888776544
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.20 E-value=2.8 Score=31.46 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHHH---HHcCCCHHHHHHHHHHHHHcC
Q 045379 153 TEDTYALLLKAYCMSGLL------EKAEAVFREMRKYGLPPSA----VVYNSYIDG---LLKGGNPQKAVEIFQRMKRDC 219 (352)
Q Consensus 153 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~~~~----~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~ 219 (352)
|..+|-..+...-+.|++ +...++|++.... ++|+. ..|.-+.-- +...+++++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 455666666666656666 6666666665543 34431 011111000 11225566666666655543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 045379 220 CQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKC 255 (352)
Q Consensus 220 ~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 255 (352)
++-=...|-+...--.++|++..|.+++......+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 111244555555555555666666666655555443
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.89 E-value=1 Score=40.04 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-----HKCKPNICTY 262 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~t~ 262 (352)
....++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45567778888999999998888887652 56888999999999999999999999988643 5889987653
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.17 E-value=1.2 Score=43.14 Aligned_cols=52 Identities=10% Similarity=-0.157 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 045379 268 AFAREGLCEEAEEIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSLVE 344 (352)
Q Consensus 268 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~~~ 344 (352)
.|...|+++.|+++-++.... .| -+-.+|..|..+|...|++|.|+=.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aP-----------------------seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--AL-----------------------DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CS-----------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--Cc-----------------------hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566666666666665543 12 25666666666666666666666555533
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.11 E-value=1.5 Score=31.87 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 045379 230 MINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
|.-++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444555555544444443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.67 E-value=1.9 Score=31.27 Aligned_cols=82 Identities=16% Similarity=-0.061 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM---ALKLFNEMRSHKCKP--NICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~ 279 (352)
+..+.+-|.+-...|. ++..+--.+.-++++..+... ++.+++++...+ .| .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444443332 444444444445555554443 555555555432 12 2223334444556666666666
Q ss_pred HHHHHHHHC
Q 045379 280 EIFEQLQGA 288 (352)
Q Consensus 280 ~l~~~m~~~ 288 (352)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.21 E-value=4.2 Score=39.37 Aligned_cols=126 Identities=17% Similarity=0.060 Sum_probs=81.5
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHHHcCC-HHHHHHHHHHHHHC------CCCCCH---
Q 045379 123 ILLIEAYGQKSL-HKKAEFTYLELLDSRCIPTEDT-Y-ALLLKAYCMSGL-LEKAEAVFREMRKY------GLPPSA--- 189 (352)
Q Consensus 123 ~~li~~~~~~g~-~~~a~~l~~~m~~~~~~p~~~~-~-~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~~~~--- 189 (352)
..++..+...|+ ++.|..+|+++.+.. |...+ + ..++......++ --+|.++..+..+. ..++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 556666666777 588999999998754 43332 2 233333333332 22444555444321 222211
Q ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045379 190 --------VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMR 251 (352)
Q Consensus 190 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 251 (352)
...+.-.+.+...|+++.|..+-++....- +.+-.+|-.|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122333455677899999999999987762 3457899999999999999999999998873
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.18 E-value=12 Score=33.66 Aligned_cols=228 Identities=11% Similarity=0.043 Sum_probs=135.3
Q ss_pred cchhhHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----HHcCCHHHHHH--HHHHHHH--
Q 045379 112 WDPIVLMSCVSILLIEAYGQKSLHKKAEFTYLELLDS-RCIPTEDTYALLLKAY----CMSGLLEKAEA--VFREMRK-- 182 (352)
Q Consensus 112 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~----~~~g~~~~a~~--~~~~m~~-- 182 (352)
.............++..|.+.|+++...+.+..+... |..+. ....++..+ ......+.... +.+....
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vt 126 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVT 126 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSS
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Confidence 3333333447788899999999999998888776643 33222 223333333 33333332222 1111110
Q ss_pred CC-CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 045379 183 YG-LPP---SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD--CCQPS---TETYTLMINLYGKASKSFMALKLFNEMRS- 252 (352)
Q Consensus 183 ~g-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~- 252 (352)
.| +-. .......|...|...|++.+|..++.++... |..+. +..+...+..|...+++.+|..++.....
T Consensus 127 e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 127 ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 111 1233456888899999999999999998642 22111 34677788999999999999999988642
Q ss_pred ---CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH--------------HHHHH-h
Q 045379 253 ---HKCKPNI--CTYTALVNAFAREGLCEEAEEIFEQLQGA-GIEPDVYAYNALMEAYR--------------LISRM-H 311 (352)
Q Consensus 253 ---~g~~p~~--~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~a~~--------------~~~~m-~ 311 (352)
....|+. .-+...+..+...+++.+|.+.|.++.+. ...-|...+..++.... +.... .
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~ 286 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN 286 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh
Confidence 2222322 34677778888899999999999888643 22334444443333222 22222 2
Q ss_pred cCCCCCHHHHHHHHHHHHHcC--CcchhHHHH
Q 045379 312 MGCEPDRASYNIMVDAYGRAG--LHEGKCSYS 341 (352)
Q Consensus 312 ~~~~p~~~~~~~li~a~~~~g--~~~~A~~~~ 341 (352)
..-.++...|..++.+|.... +++.+.+.|
T Consensus 287 ~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 287 DNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 222356677888888887653 344544444
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.69 E-value=2.1 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 253 HKCKPNICTYTALVNAFAREGLCEEAEEIFEQL 285 (352)
Q Consensus 253 ~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 285 (352)
..+.|++....+.+.+|-+-+++..|.++++-+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333344444444444444433333
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.88 E-value=5.1 Score=27.71 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
+.=++.+-++.+....+.|++......+.+|-+.+++..|..+++-.+.+- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 445666666677777777777777777777777777777777777665442 12233455444
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.13 E-value=15 Score=37.64 Aligned_cols=144 Identities=13% Similarity=-0.050 Sum_probs=84.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC---------------
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY----GL--------------- 185 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--------------- 185 (352)
++..+.+.+.++-+.++..... -++..--.+..++...|++++|.+.|.+.-.. ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 4444555555555554443322 24444445566777788888888888664210 00
Q ss_pred ---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 045379 186 ---PPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPST----ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPN 258 (352)
Q Consensus 186 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 258 (352)
..-..-|..++..+-+.+.++.+.++-....+..-+-+. ..|..+..++...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 001133566777777777777777766655443211121 2467778888888888888888877766533 3
Q ss_pred HHHHHHHHHHHHhcCCH
Q 045379 259 ICTYTALVNAFAREGLC 275 (352)
Q Consensus 259 ~~t~~~li~~~~~~g~~ 275 (352)
......|+...|..|+.
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 44566666666665554
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.01 E-value=4.6 Score=30.36 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHH---HHHHhcCCHHHHHHHHHHHHhCC
Q 045379 188 SAVVYNSYIDGLLKGGNP------QKAVEIFQRMKRDCCQPSTE----TYTLMI---NLYGKASKSFMALKLFNEMRSHK 254 (352)
Q Consensus 188 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~----~~~~li---~~~~~~g~~~~a~~l~~~m~~~g 254 (352)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|--|- ..+...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555666 6777777776653 455421 111111 01123489999999999997653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 255 CKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 255 ~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
-+- ...|-....-=.++|++..|.+++......+.+|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 333 77777777777889999999999999998776653
No 243
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.88 E-value=15 Score=31.99 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 225 ETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL--CEEAEEIFEQLQGAGIEPDVYAYNALME 302 (352)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~ 302 (352)
...+.++.-|...|+.++|.+.++++..-... ...+...+..+.-+.++ .+...+++..+.+.|+-+.......+.+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34688999999999999999999999632211 23445666666666543 4678899999999988887777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchh
Q 045379 303 AYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGK 337 (352)
Q Consensus 303 a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A 337 (352)
.+..+..+.-.++--...+..++.-+...|-+...
T Consensus 297 vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~ 331 (358)
T 3eiq_C 297 IYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 331 (358)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHH
Confidence 77777777444444444556666677777766554
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.16 E-value=14 Score=30.70 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=69.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHH
Q 045379 232 NLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGA--GIEPDVYAYNALMEAYRLISR 309 (352)
Q Consensus 232 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~~~~~li~a~~~~~~ 309 (352)
....+.|++++|++....-.+.. +-|...=..++..+|-.|+|++|.+-++...+. ...|...+|..+|++-..=..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence 34566777888777777666553 446666677778888888888888777777654 234445566666666553333
Q ss_pred H-hcC-----CCCCHHHHHHHHHHHHH--cCCcchhHHHHH
Q 045379 310 M-HMG-----CEPDRASYNIMVDAYGR--AGLHEGKCSYSL 342 (352)
Q Consensus 310 m-~~~-----~~p~~~~~~~li~a~~~--~g~~~~A~~~~~ 342 (352)
+ .-+ +.....-...|+.++.. .|+.++|.++-.
T Consensus 84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~ 124 (273)
T 1zbp_A 84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 124 (273)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3 221 12244566677776554 589888887743
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.14 E-value=7.4 Score=26.85 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
..++|..+-+.+...+. ...+--+=++.+.+.|++++|..+.+.+. .||...|..|-.. +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45555555555555432 11122222344555666666665554433 4566555554443 5555555555555
Q ss_pred HHHHCC
Q 045379 284 QLQGAG 289 (352)
Q Consensus 284 ~m~~~~ 289 (352)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 246
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=84.91 E-value=14 Score=31.39 Aligned_cols=111 Identities=11% Similarity=0.125 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL--CEEAEEIFEQLQGAGIEPDVYAYNALMEA 303 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~a 303 (352)
..+.++.-|...|+.++|.+.++++..-... ...+...+..+.-+.++ .+....++..+.+.|+-+.......+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577899999999999999999998631111 12345555666665433 56688899999888877766665555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchh
Q 045379 304 YRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGK 337 (352)
Q Consensus 304 ~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A 337 (352)
+..++.+.-.++--...+..++.-+...|-+...
T Consensus 247 l~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~ 280 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 280 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHH
Confidence 5555555444433444455666667777766543
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.49 E-value=11 Score=33.69 Aligned_cols=96 Identities=16% Similarity=-0.009 Sum_probs=70.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH----H
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS--RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK---YGLPPSAV----V 191 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~----~ 191 (352)
+...+...|.+.|++++|.+.|.++.+. +..--...+..+|..+...+++..+...+++... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667889999999999999999999864 3333456888999999999999999999988754 23223221 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 192 YNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
|..+ .+...+++..|-+.|-+....
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 2222 234578899999988876654
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.12 E-value=6.9 Score=26.94 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
..++|..+-+.+...+. ...+--+=++.+.+.|++++|..+.+.+. .||...|..|-.. +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45555555555555432 11122222444556666666665544332 5666665555443 5666666666665
Q ss_pred HHHHCC
Q 045379 284 QLQGAG 289 (352)
Q Consensus 284 ~m~~~~ 289 (352)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555444
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.38 E-value=11 Score=27.71 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=47.7
Q ss_pred HHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045379 129 YGQKS-LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYID 197 (352)
Q Consensus 129 ~~~~g-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 197 (352)
|.+.. |.=+..+-++.+....+.|++......+.+|-+.+++..|..+++-.+.+- .+...+|..++.
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 44444 555677777777777888888888888888888888888888888776542 223445655553
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.33 E-value=5 Score=29.42 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=13.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045379 218 DCCQPSTETYTLMINLYGKASKSFMALKLFNEM 250 (352)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 250 (352)
..+.|++....+.+.+|.+.+++..|.++|+-+
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.78 E-value=0.023 Score=51.50 Aligned_cols=206 Identities=10% Similarity=0.027 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCC---CchhhHHHHHHHHHHHhhccCcchhhHHhH--HHHHHHHHHHccCCHHHHH
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLP---PTHATWDDLINVSVQLRLNKKWDPIVLMSC--VSILLIEAYGQKSLHKKAE 139 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~ 139 (352)
.|..++....+.|.+++-.+.+.-.+ +++..=+.++-+|++.++..+.++.+..-. -...+.+-|...|.++.|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHH
Confidence 66789999999999999988886554 567777889999999988887777664322 2234455566666666665
Q ss_pred HHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045379 140 FTYLELLDS--------------------RCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGL 199 (352)
Q Consensus 140 ~l~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 199 (352)
-+|..+..- .-.-++.||-.+-.+|...+.+..|.-.--.+.-.. .-...++..|
T Consensus 165 ilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~Y 239 (624)
T 3lvg_A 165 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYY 239 (624)
T ss_dssp TTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSS
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHH
Confidence 555544221 112467799999999999999888866544433221 1223456667
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCH-------HHHHHHHHHHHh
Q 045379 200 LKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS-HKCKPNI-------CTYTALVNAFAR 271 (352)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~-------~t~~~li~~~~~ 271 (352)
-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++..-. -++ |-. ..|.-++-.|.+
T Consensus 240 E~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 240 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp STTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-TTTHHHHTTTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-HHHHHHHHHHhhHHHHHHHHhc
Confidence 88888888888888766321 35778888888888876 34444443333211 111 111 125555555555
Q ss_pred cCCHHHH
Q 045379 272 EGLCEEA 278 (352)
Q Consensus 272 ~g~~~~a 278 (352)
-.+++.|
T Consensus 317 ydE~DnA 323 (624)
T 3lvg_A 317 YEEYDNA 323 (624)
T ss_dssp HTCHHHH
T ss_pred chhHHHH
Confidence 5555544
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.51 E-value=23 Score=30.48 Aligned_cols=117 Identities=13% Similarity=0.008 Sum_probs=55.3
Q ss_pred hHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHH
Q 045379 116 VLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKA----EAVFREMRKYGLPPSAVV 191 (352)
Q Consensus 116 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~ 191 (352)
++....|-++..-|.+++++++|.+++-.-- ..+.+.|+...| .-+.+-+.+.++++|...
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3333355666666666666666666543321 123334443332 223344445556666665
Q ss_pred HHHHHHHHHcCCCHH-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 192 YNSYIDGLLKGGNPQ-KAVEIFQRM----KRDC--CQPSTETYTLMINLYGKASKSFMALKLF 247 (352)
Q Consensus 192 ~~~li~~~~~~g~~~-~a~~~~~~m----~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~l~ 247 (352)
...++..+.....-+ .-..+.+++ .+.| -.-|......+-..|.+.+++.+|+..|
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 555555555544311 111222222 2212 1224455555666666666666655544
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.78 E-value=9.1 Score=26.41 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045379 134 LHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQ 213 (352)
Q Consensus 134 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (352)
+.++|..+-+.+...+. ....--+-+....++|++++|..+.+.+ ..||...|-+|.. .+.|..++++.-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555544322 1112222233445566666666554443 2455555555543 34455555555555
Q ss_pred HHHHcC
Q 045379 214 RMKRDC 219 (352)
Q Consensus 214 ~m~~~~ 219 (352)
++-..|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.90 E-value=8.4 Score=26.52 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 045379 133 SLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIF 212 (352)
Q Consensus 133 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (352)
.+.++|..+-+.+...+. ....--+-+....++|++++|..+.+.+ ..||...|-+|.. .+.|..++++.-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345555555555554432 1222222234455666666666654443 3566666655543 3566666666666
Q ss_pred HHHHHcC
Q 045379 213 QRMKRDC 219 (352)
Q Consensus 213 ~~m~~~~ 219 (352)
.++-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5655554
No 255
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.13 E-value=18 Score=27.11 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL--CEEAEEIFEQLQGAGIEPDVYAYNALMEA 303 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~a 303 (352)
..+.++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+.+..++..+.+.|+-+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 45677888888888888888888875211 1123344555556655332 45677888888777766655554444444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcc
Q 045379 304 YRLISRMHMGCEPDRASYNIMVDAYGRAGLHE 335 (352)
Q Consensus 304 ~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~ 335 (352)
+..+..+.-.++--...+..++..+...|-+.
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHhChHhccCccchHHHHHHHHHHHHHCCCCC
Confidence 44444443333333334445555555555444
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.99 E-value=36 Score=30.56 Aligned_cols=232 Identities=12% Similarity=0.084 Sum_probs=134.3
Q ss_pred ccCcCcCcchhHHHHHHHHHhcCCHHHHHHHhcCC---C-CchhhHHHHHHHHHHHhh-ccCcc----------------
Q 045379 55 VDGIFPVLSPTAQQILRFVQREVDSNTIWDAFDSL---P-PTHATWDDLINVSVQLRL-NKKWD---------------- 113 (352)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~l~~~~~~~~~-~~~~~---------------- 113 (352)
...+.+.+..+...++..|.+.|+++...+.+..+ . .-...-..+++.+...-. ....+
T Consensus 48 ~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 48 QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 127 (445)
T ss_dssp SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSS
T ss_pred hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 45667777788899999999999999885544322 2 111112233332221110 00000
Q ss_pred -hh-h--HHhHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 045379 114 -PI-V--LMSCVSILLIEAYGQKSLHKKAEFTYLELLD--SRCIPT---EDTYALLLKAYCMSGLLEKAEAVFREMRK-- 182 (352)
Q Consensus 114 -~~-~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 182 (352)
.+ + +.......|...|-..|++.+|.+++..+.. .|.-+. ...+...+..|...+++..|..++.....
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 00 0 0111556788899999999999999999873 222221 34677888999999999999999888643
Q ss_pred --CCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 183 --YGLPPS--AVVYNSYIDGLLKGGNPQKAVEIFQRMKRD-CCQPSTETYTL----MINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 183 --~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~----li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
...+|+ ...+...+..+...+++.+|.+.|.+..+. ...-+...+.. ++.+..-.+....-..+.......
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc
Confidence 222222 245667777788889999988888776542 11113322221 222222222222222222222222
Q ss_pred CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 045379 254 KCKPNICTYTALVNAFARE--GLCEEAEEIFEQLQ 286 (352)
Q Consensus 254 g~~p~~~t~~~li~~~~~~--g~~~~a~~l~~~m~ 286 (352)
..-++...|..++.+|... .+++.+.+.|....
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 2235667888999998764 46777777766544
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.76 E-value=19 Score=26.23 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 187 PSAVVYNSYIDGLLKGGNP---QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
|+..+-=....++.+..+. .++..+++++.+.+-.-....+--|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444433444444444432 34555555555443111233344455555566666666666555554
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.05 E-value=22 Score=31.78 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cCCCCCHH----H
Q 045379 156 TYALLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKR---DCCQPSTE----T 226 (352)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~----~ 226 (352)
+...+...|.+.|+++.|.+.+.++... +...-...+-.++..+...+++..+...+.+... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6777889999999999999999999874 3334467788889999999999999999988654 22223222 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 227 YTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
+..+ .+...+++.+|-..|-+...
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 2222 23467889998888877654
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.98 E-value=6.8e-05 Score=67.48 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=102.4
Q ss_pred CcCcchhHHHHHHHHHhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHHHHccCCHHHH
Q 045379 59 FPVLSPTAQQILRFVQREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEAYGQKSLHKKA 138 (352)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (352)
....+.++..|..++-..|.+.+|++.|-+. .|+..|.. +|.+..+.|.+++-
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-~Dps~y~e--------------------------Vi~~A~~~~~~edL 102 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYME--------------------------VVQAANTSGNWEEL 102 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-SCCCSSSH--------------------------HHHHTTTSSCCTTH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHhC-CChHHHHH--------------------------HHHHHHhCCCHHHH
Confidence 3344457777888888888888887777655 34444443 34444455555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 139 EFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 139 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
.+.+...++..- ++..=+.|+-+|++.++..+.++++. .||..-...+-+-|...|.++.|.-+|..+...
T Consensus 103 v~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ 173 (624)
T 3lvg_A 103 VKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF 173 (624)
T ss_dssp HHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC
T ss_pred HHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH
Confidence 555443333211 22222345555555555443333221 133333333444444444444444443322110
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045379 219 --------------------CCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEA 278 (352)
Q Consensus 219 --------------------~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 278 (352)
.-.-++.||-.+-.+|...+.+.-|.-.--.+.-. || ....++..|-..|.+++-
T Consensus 174 akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 174 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEEL 248 (624)
T ss_dssp TTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHH
Confidence 00125566777777777777666554443333321 11 133455566666777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 279 EEIFEQLQGAGIEPDVYAYNALMEAYR 305 (352)
Q Consensus 279 ~~l~~~m~~~~~~p~~~~~~~li~a~~ 305 (352)
..+++.-... -....-.|+-|--.|+
T Consensus 249 IsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 249 ITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp TTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 6666655421 1345566666666665
No 260
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=74.52 E-value=22 Score=25.74 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045379 226 TYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL--CEEAEEIFEQLQGAGIEPDVYAYNALMEA 303 (352)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~a 303 (352)
..+.++.-|...|+.++|.+.++++..... -...+...+..++-+.+. .+.+..++..+.+.|+-+.......+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 456788888888999999999988852111 123345556666666542 46788888888888776665555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcch
Q 045379 304 YRLISRMHMGCEPDRASYNIMVDAYGRAGLHEG 336 (352)
Q Consensus 304 ~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~ 336 (352)
+..+..+.-.++--......++..+...|-+..
T Consensus 88 ~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~ 120 (129)
T 2nsz_A 88 YNEIPDINLDVPHSYSVLERFVEECFQAGIISK 120 (129)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCH
T ss_pred HhhChHhhcCccchHHHHHHHHHHHHHCCCCCH
Confidence 555555533333334445556666666665554
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.60 E-value=29 Score=35.53 Aligned_cols=160 Identities=13% Similarity=0.000 Sum_probs=103.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC-----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045379 124 LLIEAYGQKSLHKKAEFTYLELLDSRC-----------------------IPTEDTYALLLKAYCMSGLLEKAEAVFREM 180 (352)
Q Consensus 124 ~li~~~~~~g~~~~a~~l~~~m~~~~~-----------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (352)
.+..+|...|++++|.+.|.+.-. |+ ..-..=|.-++..+-+.+.++.+.++-...
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678889999999999976421 11 112234778899999999999999888777
Q ss_pred HHCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH------------HH
Q 045379 181 RKYGLPPS----AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFM------------AL 244 (352)
Q Consensus 181 ~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~------------a~ 244 (352)
.+..-+.+ ...|..+.+++...|++++|...+-.+..... -......|+...|..|+.+. ..
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence 65432222 22578899999999999999999988877643 46677888888887776543 44
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 045379 245 KLFNEMRSHK--CKPNICTYTALVNAFAREGLCEEAEEI-FEQLQ 286 (352)
Q Consensus 245 ~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~l-~~~m~ 286 (352)
+++....... +.....-|..|=..+...|++.+|..+ |+.+.
T Consensus 1004 ~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1004 NLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 4443322110 111112244455555667776654444 44443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.98 E-value=55 Score=28.86 Aligned_cols=166 Identities=13% Similarity=-0.068 Sum_probs=107.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcC-CHHHHHHHH----HHHHHCCCC-CCHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDS-RCIP---TEDTYALLLKAYCMSG-LLEKAEAVF----REMRKYGLP-PSAV 190 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p---~~~~~~~li~~~~~~g-~~~~a~~~~----~~m~~~g~~-~~~~ 190 (352)
+...|...|.+.|+.++..+++.....- +..| +......+++.+.... ..+.-.++. ++.....-. ....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999877532 1112 3446778888887643 334334443 333333210 0011
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 045379 191 VYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS-----TETYTLMINLYGKASKSFMALKLFNEMRSH--KCKPNICTYT 263 (352)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~ 263 (352)
.=.-++..|...|++.+|..++.++.+.--..| ...+-.-+..|...+++.++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 223678899999999999999998876321212 344666788889999999999998876432 2334444332
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHHHH
Q 045379 264 AL----VNAFA-REGLCEEAEEIFEQLQ 286 (352)
Q Consensus 264 ~l----i~~~~-~~g~~~~a~~l~~~m~ 286 (352)
.+ --.+. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 12344 7899999999988764
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.27 E-value=37 Score=25.81 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=41.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDS-RCIPT-------EDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...|++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55677788999988888775532 12233 23677788899999999999999999643
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=67.87 E-value=38 Score=25.76 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045379 148 SRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKY-GLPPS-------AVVYNSYIDGLLKGGNPQKAVEIFQRMKR 217 (352)
Q Consensus 148 ~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (352)
.|..|... ++..=+..+...|.++.|+-+.+.+... +..|+ ..++..+.+++...+++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34445433 3445567788899999999888776532 12233 23567788889999999999999998643
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.16 E-value=61 Score=27.52 Aligned_cols=117 Identities=3% Similarity=-0.143 Sum_probs=68.7
Q ss_pred hHHhHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHCCCCCCHHH
Q 045379 116 VLMSCVSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEA----VFREMRKYGLPPSAVV 191 (352)
Q Consensus 116 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~~~~~~ 191 (352)
++....|.++..-|.+++++++|.+++..-- ..+.+.|+...|-+ +.+.+.+.+++++...
T Consensus 30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 30 YEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3333366667777777777777776654432 22445566544433 4555666777788777
Q ss_pred HHHHHHHHHcCCCH-----HHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045379 192 YNSYIDGLLKGGNP-----QKAVEIFQRMKRDCC--QPSTETYTLMINLYGKASKSFMALKLF 247 (352)
Q Consensus 192 ~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~ 247 (352)
...++..+.....- +-..+......+.|- .-++.....+-..|.+.|++.+|+..|
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 77777776664321 112222233333221 236677777888888888887777755
No 266
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.44 E-value=55 Score=26.44 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELLD--SRCIP----TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSY 195 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 195 (352)
.---++.+....++++|.+++++..+ .+.++ +.......+..-.....-..+..+.+++.. .+........
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 34457888999999999999987763 22322 112334445555555556666666666633 4556777778
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 045379 196 IDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~ 216 (352)
+..+.+.|+.++|.++|=+..
T Consensus 98 v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 888999999999999985544
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.64 E-value=1e+02 Score=29.11 Aligned_cols=111 Identities=7% Similarity=-0.079 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTETYTL----MINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAE 279 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 279 (352)
+.+.|...+....+.. ..+...... +.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777777765443 223332222 222233334244555555554433 234433444445455667888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCcchhHHHHH
Q 045379 280 EIFEQLQGAGIEPDVYAYNALMEAYRLISRMHMGCEPDRASYNIMVDAYGRAGLHEGKCSYSL 342 (352)
Q Consensus 280 ~l~~~m~~~~~~p~~~~~~~li~a~~~~~~m~~~~~p~~~~~~~li~a~~~~g~~~~A~~~~~ 342 (352)
+.|..|.... .....-...+..++...|+.++|..+|.
T Consensus 306 ~~~~~l~~~~-------------------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 306 TWLARLPMEA-------------------------KEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp HHHHHSCTTG-------------------------GGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHccccc-------------------------cccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777765321 1123334556666666677666666654
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.27 E-value=43 Score=24.75 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 187 PSAVVYNSYIDGLLKGGNP---QKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
|+..+--....++.+..+. .++..+++++...+-.-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444433344444444332 23444444444432111222233344455555555555555555544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.33 E-value=28 Score=28.86 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCC
Q 045379 162 KAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCC--QPSTETYTLMINLYGKASK 239 (352)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~ 239 (352)
....+.|+++++++....-.+.. +-|...-..++..+|-.|+|+.|.+-++...+..- .|....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence 34567789999998887777763 66778888899999999999999999888876521 122234444443
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 045379 240 SFMALKLFNEMRSHKCKP-----NICTYTALVNAFA--REGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 240 ~~~a~~l~~~m~~~g~~p-----~~~t~~~li~~~~--~~g~~~~a~~l~~~m~~~ 288 (352)
|+..-.++..-+-.| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 344444444333222 2223445555544 469999999998888653
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.56 E-value=46 Score=24.23 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 221 QPSTETYTLMINLYGKASKS---FMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
.|+..+-=...-++.+..+. .+++.+++++...+-.-....+--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 45666655555566666554 578999999887652123456667778999999999999999999865 554
No 271
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.58 E-value=42 Score=27.14 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045379 159 LLLKAYCMSGLLEKAEAVFREMRKY--GLPP----SAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMIN 232 (352)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 232 (352)
--++.+....++++|.+++++.++. +.++ ........+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3467889999999999999887642 2222 112222333333333333445555555533 456777788889
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 045379 233 LYGKASKSFMALKLFNEM 250 (352)
Q Consensus 233 ~~~~~g~~~~a~~l~~~m 250 (352)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 999999999999988654
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.29 E-value=3.5 Score=33.92 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCC
Q 045379 67 QQILRFVQREVDSNTIWDAFDSL 89 (352)
Q Consensus 67 ~~l~~~~~~~g~~~~A~~~~~~~ 89 (352)
++.+....+.|+++.+..+++.-
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcC
Confidence 44556667888888888887754
No 273
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.62 E-value=52 Score=24.12 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=15.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA 237 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 237 (352)
..+..-.|.++++.+.+.+...+..|.--.+..+...
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3333444555555554443333444333333333333
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.29 E-value=72 Score=25.10 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 238 SKSFMALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 238 g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
+...++.++|..|...|+-- -+.-|..-...+...|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556666666665554322 23345555556666666666666666666665555
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.95 E-value=1.1e+02 Score=27.00 Aligned_cols=226 Identities=14% Similarity=0.052 Sum_probs=127.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhcCCCC---------chhhHHHHHHHHHHHhhccCcchhhHHhH-----------HH--
Q 045379 65 TAQQILRFVQREVDSNTIWDAFDSLPP---------THATWDDLINVSVQLRLNKKWDPIVLMSC-----------VS-- 122 (352)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~-- 122 (352)
....|...|.+.|+.++...++....| ....-..++..+...... .+..++.+. +|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999998888766542 222233444444322110 011111111 33
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 045379 123 ----ILLIEAYGQKSLHKKAEFTYLELLDS--RCIP---TEDTYALLLKAYCMSGLLEKAEAVFREMRKY--GLPPSAVV 191 (352)
Q Consensus 123 ----~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~ 191 (352)
..++..|...|++.+|.+++..+.+. .... -...+..-+..|...+++..+...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25889999999999999999988752 1111 1236777788899999999999999887643 23233333
Q ss_pred HHHH----HHHHH-cCCCHHHHHHHHHHHHHc-CCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCH
Q 045379 192 YNSY----IDGLL-KGGNPQKAVEIFQRMKRD-CCQ--P---STETYTLMINLYGKASKSFMALKLFN-EMRSHKCKPNI 259 (352)
Q Consensus 192 ~~~l----i~~~~-~~g~~~~a~~~~~~m~~~-~~~--~---~~~~~~~li~~~~~~g~~~~a~~l~~-~m~~~g~~p~~ 259 (352)
.+.+ -..+. ..+++..|...|-+..+. .-. | +...|.. +.+... ++..+.-.++. +....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~-~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIML-GQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHT-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHc-CCHHHHHHHhccccccccCCccH
Confidence 2221 12344 789999998888665321 101 1 1122322 222222 22222222221 11111124666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 045379 260 CTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDVYA 296 (352)
Q Consensus 260 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 296 (352)
..+..++.+| ..+++.+...++..... .+..|...
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l 291 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIV 291 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHH
Confidence 6677777775 56788887777776543 35556653
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.87 E-value=75 Score=24.92 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-----LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+-.+.+.|+-.+.+|.+.| .|.-..-..++-+.-.-|. ...|...++-....|.+--.......+..++.+-+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKS 104 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc
Confidence 4578899999999999888 5555555555555555553 334555566666667654444444444444444443
Q ss_pred HHH
Q 045379 206 QKA 208 (352)
Q Consensus 206 ~~a 208 (352)
..+
T Consensus 105 Ns~ 107 (204)
T 2r9g_A 105 NSA 107 (204)
T ss_dssp CHH
T ss_pred HHH
Confidence 333
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.67 E-value=67 Score=23.69 Aligned_cols=73 Identities=10% Similarity=-0.064 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 045379 149 RCIPTEDTYALLLKAYCMSGLL---EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPS 223 (352)
Q Consensus 149 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 223 (352)
+-.|+..+--....++.++.+. .++..+++++.+.+-.-...-.=.|.-++.+.|++++|.++.+.+++. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 3358888888888888887764 467888888877542222333445667899999999999999999986 554
No 278
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.30 E-value=53 Score=24.28 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 180 MRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 180 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
+++.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4444544432 222333344444444455555555555443444444433444444443
No 279
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.90 E-value=55 Score=23.64 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 180 MRKYGLPPSAVVYNSYIDGLLKGG-NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 180 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
+++.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555442 2223344444443 44455556665555544444444444444444443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.71 E-value=20 Score=28.39 Aligned_cols=149 Identities=5% Similarity=-0.112 Sum_probs=71.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVV--YNSYIDGLL 200 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 200 (352)
.+...++.|+.+.+..+++.+.+.|..++.. .-.+.+..++..|+.+-+. .+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHH
Confidence 3455667788888888887776666444322 1123455556677775444 4444555443211 123344455
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQP---STETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICT---YTALVNAFAREGL 274 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~li~~~~~~g~ 274 (352)
..|+.+-+..+++.....++.+ +....+.| ...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 6777776666655543211111 11122222 233345555443 33444454433211 2233444456677
Q ss_pred HHHHHHHH
Q 045379 275 CEEAEEIF 282 (352)
Q Consensus 275 ~~~a~~l~ 282 (352)
.+-+..++
T Consensus 163 ~~~v~~Ll 170 (241)
T 1k1a_A 163 LSMVQLLL 170 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444433
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.55 E-value=15 Score=29.09 Aligned_cols=173 Identities=10% Similarity=0.038 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 045379 160 LLKAYCMSGLLEKAEAVFREMRKYGLPPSAVV--YNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTET--YTLMINLYG 235 (352)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 235 (352)
.+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45667788999999999988877765544221 1233445566777654 444555565443221 112344445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH---
Q 045379 236 KASKSFMALKLFNEMRSHKCKP---NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPDV----YAYNALMEAYR--- 305 (352)
Q Consensus 236 ~~g~~~~a~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~----~~~~~li~a~~--- 305 (352)
..|+.+-+..+++.....++.+ +....+ .+...+..|+.+-+..+ .+.|..++. .-.+.+..|..
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLL----LERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHH----HHcCCCcccccccCCCcHHHHHHHcCC
Confidence 6788777766666543221121 111122 23334456776554444 444444332 22334444433
Q ss_pred --HHHHH-hcCCCCCHHH--HHHHHHHHHHcCCcchhHHHH
Q 045379 306 --LISRM-HMGCEPDRAS--YNIMVDAYGRAGLHEGKCSYS 341 (352)
Q Consensus 306 --~~~~m-~~~~~p~~~~--~~~li~a~~~~g~~~~A~~~~ 341 (352)
+++.+ +.|..++... -.+.+...++.|+.+-+.-++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 55555 5555553221 112333345556665444443
No 282
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=49.44 E-value=79 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.148 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCC
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-----LEKAEAVFREMRKYGL 185 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~ 185 (352)
+-.+.+.|+-.+.+|.+.|-.|.-..-..++-+.-.-|. ...|...++-....|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 347889999999999988876666555566665555443 2344455555555554
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.89 E-value=1.3e+02 Score=25.83 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=81.1
Q ss_pred HHHccCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHH
Q 045379 128 AYGQKSLHKKAEFTY----LELLDSRCIPTEDTYALLLKAYCMSGLLE-KAEAVFREM----RKYG--LPPSAVVYNSYI 196 (352)
Q Consensus 128 ~~~~~g~~~~a~~l~----~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m----~~~g--~~~~~~~~~~li 196 (352)
.+.+.|+...|-++- +-+.+.++++|..+...|+..+.....-+ .=..+.+.+ .+.| -.-+......+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 344556666655554 44446678888888888887777655321 112333333 3333 234567778888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGLCE 276 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 276 (352)
..|.+.+++.+|+..|- . |-.++...+..++--+...+... +++... ...+--|...+++.
T Consensus 144 ~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfi-aRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYC-ARAVLPYLLVANVR 204 (336)
T ss_dssp HHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHH-HHHHHHHHHhCCHH
Confidence 99999999999988883 2 32344466655554444433311 122222 22333455667888
Q ss_pred HHHHHHHHHH
Q 045379 277 EAEEIFEQLQ 286 (352)
Q Consensus 277 ~a~~l~~~m~ 286 (352)
.|..++....
T Consensus 205 ~A~~~~~~f~ 214 (336)
T 3lpz_A 205 AANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766654
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.97 E-value=52 Score=21.09 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 215 MKRDCCQPSTETYTLMINLYGKAS-KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
+.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444332 23333333332 33344455555544443344444444444444443
No 285
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.89 E-value=1.3e+02 Score=25.52 Aligned_cols=141 Identities=11% Similarity=-0.058 Sum_probs=84.1
Q ss_pred HHHHccCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 045379 127 EAYGQKSLHKKAEFT----YLELLDSRCIPTEDTYALLLKAYCMSGL-----LEKAEAVFREMRKYGL--PPSAVVYNSY 195 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l----~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~--~~~~~~~~~l 195 (352)
..+.+.|+...|-++ .+...+.+++++......++..+..... .+-..+...+-.+.|- .-+......+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345556777766664 4445567888898888888887766432 2233334444444432 2367788899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045379 196 IDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKA---SKSFMALKLFNEMRSHKCKPNICTYTALVNAFARE 272 (352)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 272 (352)
...|.+.+++.+|+..|-.-... |...+..++--+... |...++ +.. ....+--|...
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~----s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf-~~RaVL~yL~l 201 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHD----SMIKYVDLLWDWLCQVDDIEDSTV--------------AEF-FSRLVFNYLFI 201 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH----HHHHHHHHHHHHHHHTTCCCHHHH--------------HHH-HHHHHHHHHHT
T ss_pred HHHHhhcCCHHHHHHHHHhCCCc----cHHHHHHHHHHHHHhcCCCCcchH--------------HHH-HHHHHHHHHHh
Confidence 99999999999999877622111 344555555444443 433332 111 12223344566
Q ss_pred CCHHHHHHHHHHHH
Q 045379 273 GLCEEAEEIFEQLQ 286 (352)
Q Consensus 273 g~~~~a~~l~~~m~ 286 (352)
|+...|..++....
T Consensus 202 ~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 202 SNISFAHESKDIFL 215 (312)
T ss_dssp TBHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 78888888877654
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.56 E-value=73 Score=23.92 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 045379 180 MRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRD--CCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 180 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 239 (352)
+++.|+++|. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4445666553 3344555555555556666666666655 444455554444455555554
No 287
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=44.90 E-value=90 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
..+|.=|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555555566666666666554
No 288
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.61 E-value=65 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTET 226 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~ 226 (352)
-.|.++++.+.+.+...+..|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aT 54 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLAT 54 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHH
T ss_pred CCHHHHHHHHHHhCCCCCHHH
Confidence 334444444444433333333
No 289
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=43.57 E-value=1.2e+02 Score=23.98 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=46.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045379 131 QKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL-----LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKG 202 (352)
Q Consensus 131 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 202 (352)
+-.+.+.|+-.+.+|.+.|-.|.-..-..++-+.-.-|. ...|...++-....|.+--.......+-.++.+
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~A 123 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAIS 123 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999877766666666666655553 345666666666777654444443333333333
No 290
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.48 E-value=50 Score=24.27 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHcC
Q 045379 207 KAVEIFQRMKRDC 219 (352)
Q Consensus 207 ~a~~~~~~m~~~~ 219 (352)
.|.++++.+.+.+
T Consensus 35 ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 35 TPDDILGEVRKTA 47 (145)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444433
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.91 E-value=2e+02 Score=26.37 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045379 224 TETYTLMINLYGKASKSFMALKLFNEMRSHKC-KPNI--CTYT-ALVNAFAREGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~t~~-~li~~~~~~g~~~~a~~l~~~m~~~ 288 (352)
...+|.++..|...+.++.|..+.....--.. .++. .+|. -+-..+.-++++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888888888888888888887642100 1111 1222 1234455678888888888776644
No 292
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.75 E-value=96 Score=22.63 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
.+.+.|.+++..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 45566666554422 3344444455556677777777666555566666555666655553
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.50 E-value=43 Score=25.60 Aligned_cols=159 Identities=6% Similarity=-0.112 Sum_probs=83.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHc-CC
Q 045379 129 YGQKSLHKKAEFTYLELLDSRCIPTE-DTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAV---VYNSYIDGLLK-GG 203 (352)
Q Consensus 129 ~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~-~g 203 (352)
.++.|+++....++.. ++.... ..=.+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3567888876666543 221111 112345566667777777778888888888766532 22233322222 33
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHh-CCCCCCHHHH--HHHHHHHHhcCCHH
Q 045379 204 NPQKAVEIFQRMKRDCCQPSTET---YTLMINLYGKASKS-FMALKLFNEMRS-HKCKPNICTY--TALVNAFAREGLCE 276 (352)
Q Consensus 204 ~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~-~~a~~l~~~m~~-~g~~p~~~t~--~~li~~~~~~g~~~ 276 (352)
+.....++.+.+.+.|..++... .+..+...+..+.. ..-..+++.+.+ .|..++.... .+-+....+.|+.+
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~ 168 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 45556677888888887665432 21222222333433 345567777777 7766544321 12333445666655
Q ss_pred HHHHHHHHHHHCCCC
Q 045379 277 EAEEIFEQLQGAGIE 291 (352)
Q Consensus 277 ~a~~l~~~m~~~~~~ 291 (352)
-+.-+.+.+.+.+++
T Consensus 169 ~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 169 ALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 544444444444443
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.24 E-value=90 Score=22.46 Aligned_cols=58 Identities=9% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 215 MKRDCCQPSTETYTLMINLYGKAS-KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 215 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555544322 3334444444 45556666666666555555555555555555444
No 295
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.37 E-value=71 Score=20.42 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 180 MRKYGLPPSAVVYNSYIDGLLKGG-NPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 180 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544322 23334433332 33445555555555443344444444444444444
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.89 E-value=82 Score=21.25 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 170 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
.+.|.++++.+.++|- ..|..++.++...|+.
T Consensus 53 ~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 53 RDQARQLIIDLETRGS----QALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcH
Confidence 4444444444444432 3444444444433433
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.27 E-value=32 Score=29.60 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRM 215 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m 215 (352)
..++.=|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444444445555555544444
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.00 E-value=1e+02 Score=22.68 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045379 213 QRMKRDCCQPSTETYTLMINLYGKAS-KSFMALKLFNEMRSHKCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 213 ~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 274 (352)
+.+.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345566666655432 3344444444 555677777777766655666666666666665554
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.70 E-value=86 Score=22.92 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045379 214 RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSHKCKPNICTYTALVNAFAREG 273 (352)
Q Consensus 214 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 273 (352)
.+.+.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455565555432 22333333334 4456666666666655556655555555555544
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.81 E-value=2.3e+02 Score=25.94 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHH-HHHHHHHcCCCHHHHHHHHHHHHHc
Q 045379 154 EDTYALLLKAYCMSGLLEKAEAVFREMRKYGL-PPSA--VVYN-SYIDGLLKGGNPQKAVEIFQRMKRD 218 (352)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 218 (352)
...+|.+++.|...+.+++|..+.+...-.-. .++. .+|. -+-..+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45788999999999999999999998742110 1111 2222 2344556688999999998887654
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.11 E-value=2.1e+02 Score=24.34 Aligned_cols=107 Identities=8% Similarity=-0.092 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccCcchhhHHhHHHHHHHHH--HHcc---CCHHHHHHHHHHHHhC
Q 045379 74 QREVDSNTIWDAFDSLPPTHATWDDLINVSVQLRLNKKWDPIVLMSCVSILLIEA--YGQK---SLHKKAEFTYLELLDS 148 (352)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~---g~~~~a~~l~~~m~~~ 148 (352)
.+.|++++|+..|..+.. ...+..........++.+++..+.-|-.-++. -.+. .+....+++-.-+-.-
T Consensus 125 ~t~gKf~eAl~~Fr~iL~-----~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c 199 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY-----RITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKA 199 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGS
T ss_pred HhcCCHHHHHHHHHHHHH-----HhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccC
Confidence 368999999998875420 00000000011122223333333333322222 1121 4556666776677666
Q ss_pred CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 045379 149 RCIPTED--TYALLLKAYCMSGLLEKAEAVFREMRKYGL 185 (352)
Q Consensus 149 ~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 185 (352)
.+.|... ++..-|..+.+.+++-.|-.+-+++.+.+-
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 6666554 566777788888888888888888887654
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.03 E-value=1.1e+02 Score=20.90 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045379 208 AVEIFQRMKRDCCQPSTETYTLMINLYGKAS 238 (352)
Q Consensus 208 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 238 (352)
|.++.+++..-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444444444555555555555555444444
No 303
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.79 E-value=1.2e+02 Score=21.44 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045379 246 LFNEMRSHKCKPNICTYTALVNAFAREGLCEEAEEIFEQLQG 287 (352)
Q Consensus 246 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 287 (352)
+|+.+....+.|++..--.-|..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544444445555677788888888877764
No 304
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.28 E-value=1.4e+02 Score=22.15 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 045379 170 LEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 170 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 221 (352)
.+.+..+++.+.+.|+..|..--...+....+.| -....+-.++.++|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 4455566666666666555444455555555433 1344566667777764
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.76 E-value=1.1e+02 Score=26.11 Aligned_cols=65 Identities=15% Similarity=-0.030 Sum_probs=38.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG--LLEKAEAVFREMRKYGLPP 187 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~ 187 (352)
-...++.-|...|+.++|.+.++++..... -......++......+ .-+.+..++..+.+.|+-+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 457788899999999999999988853111 1111222222222222 2355666777777776643
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.70 E-value=1.4e+02 Score=21.89 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=41.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 045379 143 LELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNP 205 (352)
Q Consensus 143 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 205 (352)
+.+.+.|.+++.. -..++......+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4466778775544 4455666667777888999999998877666666666666666666643
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.55 E-value=1.5e+02 Score=22.09 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045379 243 ALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEP 292 (352)
Q Consensus 243 a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 292 (352)
+.++|..|...|+-- -+.-|..-...+...|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677777777766532 33456666677777788888888888877777666
No 308
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.45 E-value=60 Score=23.58 Aligned_cols=45 Identities=13% Similarity=-0.082 Sum_probs=25.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGL 169 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 169 (352)
+++.+...+..-.|.++++.+.+.+...+..|.-..|..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 444455555556666666666666555555555555555555543
No 309
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.27 E-value=1e+02 Score=21.76 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045379 140 FTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKY 183 (352)
Q Consensus 140 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (352)
-+|+.+.+..+.|++..-..-|..+...++++.|.+++.++...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 35666666677666655555556667788999999998887653
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.00 E-value=1.4e+02 Score=22.23 Aligned_cols=68 Identities=10% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 045379 206 QKAVEIFQ-RMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEMRSH--KCKPNICTYTALVNAFAREGL 274 (352)
Q Consensus 206 ~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~ 274 (352)
+.+.+-+. .+.+.|.+++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444443 355667776554 345556666666777788888888766 555666666666666666664
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.85 E-value=24 Score=21.55 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045379 206 QKAVEIFQRMKRDCCQPSTETYTLMINLY 234 (352)
Q Consensus 206 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 234 (352)
++|++.|.+|++..-.++.-||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34445555444433233334444444444
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.62 E-value=67 Score=22.99 Aligned_cols=44 Identities=16% Similarity=-0.071 Sum_probs=23.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSG 168 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 168 (352)
+++.+...+..-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444555566666666665555455555444455554444
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.60 E-value=1.1e+02 Score=24.47 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 171 EKAEAVFREMRKYGLPPS-AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 171 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
+...++|..|...|+-.. ..-|......+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355567777776665433 3445566666666777777777777766666555
No 314
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.55 E-value=2e+02 Score=26.67 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 045379 136 KKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKA 208 (352)
Q Consensus 136 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 208 (352)
....+...++..+=.--+..-..-++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|+|+|+++.+
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 334444444443333335556667777777777777777777776554332 12334 455566777766554
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.14 E-value=54 Score=24.87 Aligned_cols=160 Identities=13% Similarity=-0.030 Sum_probs=66.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCC
Q 045379 127 EAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVV--YNSYIDGLLKGGN 204 (352)
Q Consensus 127 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~ 204 (352)
...+..|+.+.+..++..-...--.++..-+ +.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKAL----IDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3345667777776666432200001222222 234445566776544444 44454443211 1123344456677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045379 205 PQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKSFMALKLFNEM-RSHKCKPNICTYTALVNAFAREGLCEEAEEIFE 283 (352)
Q Consensus 205 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 283 (352)
.+-+..+++.-...--..+....+. +...+..|+.+-+..+++.- .... ..+..-.+.+..+.........-.++.+
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 6665555543211000111111122 33344566666555554432 1111 1122223333333332222333345556
Q ss_pred HHHHCCCCCC
Q 045379 284 QLQGAGIEPD 293 (352)
Q Consensus 284 ~m~~~~~~p~ 293 (352)
.+.+.|..|+
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6666665554
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.04 E-value=2.9e+02 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045379 150 CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 150 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (352)
+..+......++.. ..|+...+..+++.+..
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 33455555555555 45777777777666543
No 317
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.81 E-value=23 Score=28.79 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=7.9
Q ss_pred HHHHHHccCCHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFT 141 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l 141 (352)
.+...++.|+.+.+..+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 34444555555444333
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.72 E-value=31 Score=27.08 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=24.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045379 126 IEAYGQKSLHKKAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVF 177 (352)
Q Consensus 126 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 177 (352)
+...++.|+.+....++..-...-..++..-.+ .+...+..|+.+-+..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLL 60 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence 455566777777777666532211112222222 333445556655444433
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.51 E-value=4.4e+02 Score=26.33 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETY--TLMINLYGKASKSFMALKLFNEMRS 252 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~l~~~m~~ 252 (352)
..|+.+.+..+.+.+.... .|....- .++..+|+..|+.....+++..+..
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 4455555555555554421 1111111 1223344455554444445555443
No 320
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.14 E-value=4.5e+02 Score=26.28 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=82.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045379 125 LIEAYGQKSLHKKAEFTYLELLDSRCIPTED-TYA---LLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYIDGLL 200 (352)
Q Consensus 125 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 200 (352)
+.-++.-.|+.+.+..+.+.+... .++. -|. .+.-+|+..|+.....++++.+.... ..++.....+.-++.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI 605 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhh
Confidence 333444678888888888888764 2333 222 33345677888888888988887652 223344444444555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045379 201 KGGNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASKS-FMALKLFNEMRSHKCKPNICTYTALVNAF 269 (352)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~t~~~li~~~ 269 (352)
..|+.+.+.++++.+.+.+ .|.++---.+.-+....|.. .++++++..+... +|..+-...+-++
T Consensus 606 ~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp TSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 6777777888887777654 44454444444444445554 6788888888753 4554443333333
No 321
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.65 E-value=4.4e+02 Score=26.06 Aligned_cols=92 Identities=8% Similarity=0.103 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045379 157 YALLLKAYCMSGLL---EKAEAVFREMRKY----GLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYTL 229 (352)
Q Consensus 157 ~~~li~~~~~~g~~---~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 229 (352)
-..++...|..|.. +.|.+.|+..... .++|+.. ..+...-.+.|..++-..+++..... .+..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHH
Confidence 34567777777774 4667777766543 2556533 22223333456666666666766654 24455567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 045379 230 MINLYGKASKSFMALKLFNEMRSH 253 (352)
Q Consensus 230 li~~~~~~g~~~~a~~l~~~m~~~ 253 (352)
++.+++...+.+...++++.....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCC
Confidence 888888888888877877776543
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.50 E-value=1.4e+02 Score=20.31 Aligned_cols=56 Identities=18% Similarity=0.031 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCCHHHHHH
Q 045379 137 KAEFTYLELLDSRCIPTEDTYALLLKAYCMSGLLEKAEAVFRE-----MRKYGLPPSAVVYNS 194 (352)
Q Consensus 137 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~ 194 (352)
.|.++.+++..-|+.|+..+...++..|...+. + +.++.++ ....|..|+....+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 355666677777787888777788877777664 2 3222222 124466666665543
No 323
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.78 E-value=3e+02 Score=23.80 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=42.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIPT---EDTYALLLKAYCMSGL--LEKAEAVFREMRKYGLPPS 188 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~ 188 (352)
....+|.-|...|+.++|.+.++++.. |+ ......++......++ -+.+-.++..+...++-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 567889999999999999999999865 53 2233334444444343 3456667777777665443
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.96 E-value=82 Score=25.09 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=30.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--cCCCHHHHHHHHHHH
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPPSAVV-------YNSYIDGLL--KGGNPQKAVEIFQRM 215 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m 215 (352)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445566777777777776666555444222 233333322 456666666666554
No 325
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.84 E-value=2.1e+02 Score=21.72 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 045379 171 EKAEAVFREMRKYGLPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQ 221 (352)
Q Consensus 171 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 221 (352)
+.+..+++.+.+.|+..|..--...+....+.|.+ ....+-.++.++|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 44556666666777655555555566555544332 234556667777764
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.57 E-value=2.1e+02 Score=21.58 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045379 243 ALKLFNEMRSHKCKP-NICTYTALVNAFAREGLCEEAEEIFEQLQGAGIEPD 293 (352)
Q Consensus 243 a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 293 (352)
..++|..|...|+-- -+.-|..-...+...|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 556777777766533 234466666667777888888888887777776664
No 327
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.44 E-value=1.4e+02 Score=19.67 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045379 203 GNPQKAVEIFQRMKRDCCQPSTETYTLMINLYGKASK 239 (352)
Q Consensus 203 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 239 (352)
...++|.++++.+..+ ...+|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCH
Confidence 3444555555554433 23445555555544444
No 328
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.31 E-value=1.1e+02 Score=25.55 Aligned_cols=14 Identities=0% Similarity=-0.168 Sum_probs=6.5
Q ss_pred HHHcCCCHHHHHHH
Q 045379 198 GLLKGGNPQKAVEI 211 (352)
Q Consensus 198 ~~~~~g~~~~a~~~ 211 (352)
..+..|..+.+..+
T Consensus 245 ~a~~~~~~~~v~~L 258 (337)
T 4g8k_A 245 LAVEKKHLGLVQRL 258 (337)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHhhhhHHHHHH
Confidence 34445555544433
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.21 E-value=82 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=12.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDCCQPSTET 226 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 226 (352)
..+...+..-.|.++++.+.+.+...+..|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aT 50 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTT 50 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 333333333444444444444433333333
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.19 E-value=92 Score=22.24 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHc
Q 045379 205 PQKAVEIFQRMKRD 218 (352)
Q Consensus 205 ~~~a~~~~~~m~~~ 218 (352)
.-.|.++++.+.+.
T Consensus 26 ~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 26 FRSAQELHDELRRR 39 (131)
T ss_dssp CEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33444444444443
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.03 E-value=2e+02 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=14.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 045379 122 SILLIEAYGQKSLHKKAEFTYLELL 146 (352)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~l~~~m~ 146 (352)
.+.+|.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4455555555566666655555553
No 332
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.13 E-value=2.6e+02 Score=21.89 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP-TEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPP 187 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 187 (352)
.|-..++.+ .++...++.++|..|...|+-- -+.-|..-...+-..|++.+|.++|+.-.+.+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444433 2223445555555555444322 23344444444455555555555555555544444
No 333
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.02 E-value=2.3e+02 Score=21.29 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=69.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh-c
Q 045379 163 AYCMSGLLEKAEAVFREMRKYGLPPSA-VVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTE---TYTLMINLYGK-A 237 (352)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~-~ 237 (352)
..++.|+.+....+++. +..... ..-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. .
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 44577888886666543 321111 112345666677777777778888888888766543 23334333322 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHH-CCCCCC
Q 045379 238 SKSFMALKLFNEMRSHKCKPNICT---YTALVNAFAREGLC-EEAEEIFEQLQG-AGIEPD 293 (352)
Q Consensus 238 g~~~~a~~l~~~m~~~g~~p~~~t---~~~li~~~~~~g~~-~~a~~l~~~m~~-~~~~p~ 293 (352)
.+.....++.+.+.+.|..++... .++.+...+..|.. ..-..+++.+.+ .|..++
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 344556677777888887665432 21222222233322 344556666666 666554
No 334
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.11 E-value=5.5e+02 Score=25.34 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHHccCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045379 124 LLIEAYGQKSL---HKKAEFTYLELLDSR----CIPTEDTYALLLKAYCMSGLLEKAEAVFREMRKYGLPPSAVVYNSYI 196 (352)
Q Consensus 124 ~li~~~~~~g~---~~~a~~l~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 196 (352)
.++...|+.|. .++|.+.|+.....+ ++||.. ..+.....+.|..++-..+++..++.. +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 35555666654 446777777766432 455543 233334445677776667777776653 345556788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 045379 197 DGLLKGGNPQKAVEIFQRMKRDC-CQPSTETYTLMINLYGKASK-SFMALKLFNEMRS---HKCKPNICTYTALVNAFAR 271 (352)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~---~g~~p~~~t~~~li~~~~~ 271 (352)
.+++...+.....++++...... +++ ... ..++.+...... .+.|.+.+.+=-+ .....+...+..+|.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 88888888888888887776533 222 222 223333333222 2334444433211 1223344567888888777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 045379 272 EGLCEEAEEIFEQLQGA 288 (352)
Q Consensus 272 ~g~~~~a~~l~~~m~~~ 288 (352)
.-.-++-++-++...+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 76666666666776644
No 335
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.00 E-value=3.8e+02 Score=23.42 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045379 156 TYALLLKAYCMSGL---LEKAEAVFREMRKYG----LPPSAVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQPSTETYT 228 (352)
Q Consensus 156 ~~~~li~~~~~~g~---~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 228 (352)
.-..++...|..|+ .+.|.+.|+...+.+ ++|+....- ...-. +.-++-..+++..... .+..--+
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~V--y~~~~--~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAV--FAVGA--QSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHH--HHHHT--TSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeE--Eeeee--CCHHHHHHHHHHHhcC---CCHHHHH
Confidence 34456666777776 346666666655432 445433211 11111 1233334444444443 3455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 045379 229 LMINLYGKASKSFMALKLFNEMRSHK 254 (352)
Q Consensus 229 ~li~~~~~~g~~~~a~~l~~~m~~~g 254 (352)
.++.+++...+.....++++......
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 77777777777777777777666544
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.00 E-value=2.5e+02 Score=21.01 Aligned_cols=61 Identities=7% Similarity=-0.041 Sum_probs=42.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----HHcCCHHHHHHHHHHHHH
Q 045379 121 VSILLIEAYGQKSLHKKAEFTYLELLDSRCIP--TEDTYALLLK-AY-----CMSGLLEKAEAVFREMRK 182 (352)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p--~~~~~~~li~-~~-----~~~g~~~~a~~~~~~m~~ 182 (352)
.|..-+..|-. |++-+|.++|+..-.....+ ....|..||. .. .+.|++..|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444 99999999999887665555 5557777777 32 357888888888887754
No 337
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.63 E-value=2.5e+02 Score=20.81 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 045379 173 AEAVFREMRKYGLPPS-AVVYNSYIDGLLKGGNPQKAVEIFQRMKRDCCQP 222 (352)
Q Consensus 173 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 222 (352)
+.++|..|...|+-.. ..-|......+-..|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544322 2334444444555555555555555555554444
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.41 E-value=4e+02 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 045379 193 NSYIDGLLKGGNPQKAVEIFQRMK 216 (352)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~ 216 (352)
..+|.=|...|+.++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444555555555555555543
No 339
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.32 E-value=75 Score=23.13 Aligned_cols=13 Identities=0% Similarity=-0.207 Sum_probs=5.4
Q ss_pred HHccCCHHHHHHH
Q 045379 129 YGQKSLHKKAEFT 141 (352)
Q Consensus 129 ~~~~g~~~~a~~l 141 (352)
.++.|+.+.+..+
T Consensus 15 A~~~g~~~~v~~l 27 (165)
T 3twr_A 15 AAKAGDVETVKKL 27 (165)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 3344444444333
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.12 E-value=56 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=15.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 045379 161 LKAYCMSGLLEKAEAVFREMRKYGLPP 187 (352)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~g~~~ 187 (352)
+...+..|+.+.+..+++.+.+.|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344455666666666666655555433
Done!