Query 045382
Match_columns 191
No_of_seqs 118 out of 365
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_A Protein (transcription 99.9 9.1E-29 3.1E-33 180.0 5.1 72 106-177 4-76 (76)
2 1cf7_B Protein (transcription 99.4 5.1E-14 1.7E-18 106.6 0.0 62 113-177 30-91 (95)
3 1qgp_A Protein (double strande 93.2 0.058 2E-06 37.9 2.9 54 119-172 17-71 (77)
4 2heo_A Z-DNA binding protein 1 92.4 0.087 3E-06 35.8 2.8 53 117-170 11-63 (67)
5 1qbj_A Protein (double-strande 92.2 0.097 3.3E-06 37.4 3.0 56 118-173 12-68 (81)
6 1oyi_A Double-stranded RNA-bin 91.9 0.15 5.3E-06 37.0 3.8 57 115-174 16-72 (82)
7 2xvc_A ESCRT-III, SSO0910; cel 91.8 0.11 3.7E-06 36.0 2.8 44 119-163 13-56 (59)
8 1u2w_A CADC repressor, cadmium 89.5 0.6 2.1E-05 34.4 5.3 67 121-189 47-115 (122)
9 3r0a_A Putative transcriptiona 89.4 0.38 1.3E-05 35.7 4.1 46 120-165 30-75 (123)
10 2htj_A P fimbrial regulatory p 89.3 0.4 1.4E-05 32.8 3.9 43 120-164 4-46 (81)
11 3cuo_A Uncharacterized HTH-typ 88.0 1.2 4.1E-05 30.3 5.7 64 121-186 29-94 (99)
12 1r1u_A CZRA, repressor protein 87.7 0.55 1.9E-05 33.5 3.9 66 121-189 31-98 (106)
13 3pqk_A Biofilm growth-associat 87.5 1.5 5E-05 30.8 6.0 57 132-188 36-94 (102)
14 2y75_A HTH-type transcriptiona 86.9 0.72 2.5E-05 33.9 4.3 49 117-165 10-59 (129)
15 2kko_A Possible transcriptiona 86.6 0.99 3.4E-05 32.5 4.8 55 131-185 37-93 (108)
16 3jth_A Transcription activator 86.6 1.2 4.1E-05 30.9 5.1 57 131-187 35-93 (98)
17 3qph_A TRMB, A global transcri 86.5 0.18 6.1E-06 44.2 0.8 43 132-174 32-74 (342)
18 2d1h_A ST1889, 109AA long hypo 84.7 0.63 2.2E-05 31.9 2.8 36 131-166 35-70 (109)
19 1r1t_A Transcriptional repress 84.5 1.2 4.2E-05 33.0 4.5 59 131-189 58-118 (122)
20 1sfx_A Conserved hypothetical 83.8 0.76 2.6E-05 31.4 2.9 44 120-165 24-67 (109)
21 2lkp_A Transcriptional regulat 82.9 1.5 5.3E-05 31.3 4.4 57 132-188 45-103 (119)
22 2oqg_A Possible transcriptiona 82.2 1.1 3.8E-05 31.5 3.3 46 120-168 25-70 (114)
23 3mq0_A Transcriptional repress 81.5 1.8 6.1E-05 36.3 4.9 54 120-175 34-87 (275)
24 1ub9_A Hypothetical protein PH 81.3 1 3.5E-05 30.7 2.8 43 121-165 21-63 (100)
25 1y0u_A Arsenical resistance op 81.3 0.64 2.2E-05 32.5 1.7 48 120-172 35-82 (96)
26 1ku9_A Hypothetical protein MJ 80.9 3.1 0.00011 29.7 5.4 35 131-165 40-74 (152)
27 3bro_A Transcriptional regulat 80.2 1 3.5E-05 32.3 2.5 45 121-165 39-83 (141)
28 3eco_A MEPR; mutlidrug efflux 80.1 1 3.6E-05 32.3 2.6 46 120-165 35-80 (139)
29 2fu4_A Ferric uptake regulatio 77.4 1 3.5E-05 30.5 1.8 47 120-166 21-72 (83)
30 1wi9_A Protein C20ORF116 homol 74.5 3.5 0.00012 29.4 3.9 60 116-177 7-68 (72)
31 2qko_A Possible transcriptiona 74.4 1.4 4.6E-05 33.4 1.9 43 109-151 25-67 (215)
32 1r7j_A Conserved hypothetical 74.1 3.7 0.00013 29.4 4.1 56 112-172 4-59 (95)
33 2frh_A SARA, staphylococcal ac 73.8 1.9 6.4E-05 31.4 2.5 45 121-165 42-86 (127)
34 2wte_A CSA3; antiviral protein 73.4 2.3 7.7E-05 35.6 3.2 58 115-174 151-208 (244)
35 3rkx_A Biotin-[acetyl-COA-carb 73.4 2.2 7.5E-05 37.0 3.2 57 119-175 6-63 (323)
36 3gwz_A MMCR; methyltransferase 73.1 1.6 5.3E-05 37.5 2.2 43 130-172 69-112 (369)
37 2jsc_A Transcriptional regulat 72.9 1.9 6.5E-05 31.4 2.3 62 120-184 25-88 (118)
38 1on2_A Transcriptional regulat 72.9 2.6 8.9E-05 30.8 3.1 36 132-167 22-57 (142)
39 2ip2_A Probable phenazine-spec 72.5 1.4 4.9E-05 36.5 1.7 42 131-172 40-81 (334)
40 3i53_A O-methyltransferase; CO 72.5 1.2 4.2E-05 37.1 1.3 42 131-172 37-78 (332)
41 3jw4_A Transcriptional regulat 72.4 1.6 5.5E-05 31.9 1.8 46 121-166 46-91 (148)
42 2dk5_A DNA-directed RNA polyme 72.3 2.7 9.3E-05 30.3 3.0 47 119-165 23-69 (91)
43 1j5y_A Transcriptional regulat 72.3 2.6 8.8E-05 33.2 3.1 55 119-175 24-79 (187)
44 1sfu_A 34L protein; protein/Z- 72.2 4.4 0.00015 29.0 4.0 57 115-173 14-70 (75)
45 3lst_A CALO1 methyltransferase 71.8 1.6 5.6E-05 36.8 2.0 42 130-172 53-94 (348)
46 2xrn_A HTH-type transcriptiona 71.6 3.3 0.00011 33.8 3.7 54 120-175 10-64 (241)
47 2dbb_A Putative HTH-type trans 71.0 5.5 0.00019 29.6 4.6 49 114-164 7-55 (151)
48 2cfx_A HTH-type transcriptiona 70.7 4.4 0.00015 30.2 3.9 47 116-164 5-51 (144)
49 1ylf_A RRF2 family protein; st 70.4 3.1 0.00011 31.6 3.1 55 118-172 16-71 (149)
50 2ia0_A Putative HTH-type trans 70.1 2.7 9.4E-05 32.7 2.8 54 109-164 10-63 (171)
51 1mkm_A ICLR transcriptional re 69.8 3.8 0.00013 33.4 3.7 54 120-175 12-65 (249)
52 3r4k_A Transcriptional regulat 69.7 2.3 8E-05 35.1 2.4 53 121-175 11-64 (260)
53 3f6o_A Probable transcriptiona 68.6 5.2 0.00018 28.9 3.9 50 120-172 22-71 (118)
54 2o0y_A Transcriptional regulat 68.5 2.3 8E-05 35.1 2.2 41 131-171 37-77 (260)
55 2r3s_A Uncharacterized protein 68.4 1.7 5.8E-05 35.8 1.3 40 131-171 38-77 (335)
56 2x4h_A Hypothetical protein SS 68.3 3.5 0.00012 29.9 2.9 37 130-166 29-65 (139)
57 2pg4_A Uncharacterized protein 68.0 2.9 9.8E-05 28.9 2.3 50 114-164 11-63 (95)
58 3g3z_A NMB1585, transcriptiona 67.9 2.8 9.7E-05 30.3 2.3 33 133-165 46-78 (145)
59 3bja_A Transcriptional regulat 67.8 3.6 0.00012 29.1 2.8 43 121-165 38-80 (139)
60 3pfi_A Holliday junction ATP-d 67.3 3.6 0.00012 34.0 3.1 55 114-168 261-316 (338)
61 3oio_A Transcriptional regulat 67.2 2.9 0.0001 29.7 2.2 45 116-160 7-51 (113)
62 1xn7_A Hypothetical protein YH 67.2 3.1 0.00011 29.3 2.3 45 119-165 5-49 (78)
63 3oou_A LIN2118 protein; protei 67.0 2.2 7.4E-05 30.2 1.5 45 116-160 5-49 (108)
64 3u2r_A Regulatory protein MARR 66.9 2.4 8.4E-05 31.7 1.8 45 122-166 52-96 (168)
65 1qzz_A RDMB, aclacinomycin-10- 66.7 2.2 7.5E-05 35.9 1.7 42 131-172 48-91 (374)
66 2pn6_A ST1022, 150AA long hypo 66.4 5.4 0.00018 29.6 3.7 44 119-164 6-49 (150)
67 3k69_A Putative transcription 66.3 5.4 0.00019 31.1 3.8 49 117-165 13-61 (162)
68 3tgn_A ADC operon repressor AD 65.4 4.5 0.00015 29.0 2.9 44 120-166 42-85 (146)
69 4b8x_A SCO5413, possible MARR- 65.0 3 0.0001 31.0 2.0 45 122-166 41-85 (147)
70 3ech_A MEXR, multidrug resista 64.9 4.5 0.00015 29.2 2.9 44 121-166 42-85 (142)
71 2fbi_A Probable transcriptiona 64.8 2.9 0.0001 29.7 1.8 34 132-165 50-83 (142)
72 2jt1_A PEFI protein; solution 64.7 3.9 0.00013 28.8 2.4 44 130-173 22-68 (77)
73 2p5v_A Transcriptional regulat 64.6 4.1 0.00014 30.9 2.7 49 114-164 8-56 (162)
74 2g7u_A Transcriptional regulat 64.5 3.4 0.00012 33.9 2.4 49 121-171 19-67 (257)
75 3mkl_A HTH-type transcriptiona 64.5 3 0.0001 30.0 1.9 40 116-155 7-46 (120)
76 2qww_A Transcriptional regulat 64.2 4.1 0.00014 29.6 2.6 42 121-164 46-87 (154)
77 3mn2_A Probable ARAC family tr 64.1 2.7 9.3E-05 29.6 1.5 44 117-160 3-46 (108)
78 3nrv_A Putative transcriptiona 63.9 3.7 0.00012 29.7 2.2 44 120-165 44-87 (148)
79 2hzt_A Putative HTH-type trans 63.7 2.2 7.6E-05 30.4 1.0 36 131-166 26-62 (107)
80 3bpv_A Transcriptional regulat 63.6 4.2 0.00014 28.8 2.5 43 121-165 34-76 (138)
81 1v4r_A Transcriptional repress 63.6 7.1 0.00024 27.4 3.7 53 114-166 13-69 (102)
82 2nnn_A Probable transcriptiona 63.5 2.9 9.9E-05 29.7 1.6 34 132-165 52-85 (140)
83 2ia2_A Putative transcriptiona 63.4 4.2 0.00014 33.6 2.7 49 121-171 26-74 (265)
84 2k02_A Ferrous iron transport 63.3 3.7 0.00013 29.7 2.1 46 119-166 5-50 (87)
85 3boq_A Transcriptional regulat 63.3 6.4 0.00022 28.7 3.5 35 131-165 61-95 (160)
86 2vn2_A DNAD, chromosome replic 63.0 3.2 0.00011 31.0 1.8 39 129-167 48-86 (128)
87 3fiw_A Putative TETR-family tr 62.8 3.1 0.0001 32.6 1.7 47 105-151 18-64 (211)
88 2bv6_A MGRA, HTH-type transcri 62.6 3.8 0.00013 29.4 2.1 35 132-166 51-85 (142)
89 2gxg_A 146AA long hypothetical 62.6 4.1 0.00014 29.2 2.3 36 130-165 48-83 (146)
90 3f6v_A Possible transcriptiona 62.5 5.7 0.00019 30.6 3.2 52 119-173 61-112 (151)
91 3g1o_A Transcriptional regulat 62.5 2.8 9.7E-05 32.8 1.5 42 109-150 40-81 (255)
92 1i1g_A Transcriptional regulat 62.3 3.7 0.00013 30.0 2.0 45 119-165 7-51 (141)
93 3nqo_A MARR-family transcripti 62.3 3.6 0.00012 31.8 2.1 45 121-165 46-90 (189)
94 3tqn_A Transcriptional regulat 62.1 8.8 0.0003 27.7 4.0 52 116-167 13-68 (113)
95 2fa5_A Transcriptional regulat 62.1 4.3 0.00015 29.8 2.3 36 131-166 62-97 (162)
96 3cdh_A Transcriptional regulat 61.9 4.4 0.00015 29.6 2.4 36 131-166 56-91 (155)
97 2w25_A Probable transcriptiona 61.6 5.3 0.00018 29.8 2.8 48 115-164 6-53 (150)
98 1q1h_A TFE, transcription fact 61.5 3.6 0.00012 29.1 1.8 34 132-165 33-66 (110)
99 3cjn_A Transcriptional regulat 61.2 5 0.00017 29.5 2.6 34 132-165 66-99 (162)
100 3f3x_A Transcriptional regulat 61.2 3.7 0.00013 29.6 1.8 43 121-166 42-84 (144)
101 1tw3_A COMT, carminomycin 4-O- 60.9 3.3 0.00011 34.7 1.7 42 131-172 51-92 (360)
102 2fbk_A Transcriptional regulat 60.5 7.2 0.00025 29.6 3.4 34 132-165 86-119 (181)
103 2cg4_A Regulatory protein ASNC 60.5 5.3 0.00018 29.9 2.6 48 115-164 7-54 (152)
104 2v79_A DNA replication protein 60.4 11 0.00036 28.8 4.4 45 121-165 40-84 (135)
105 1tbx_A ORF F-93, hypothetical 60.4 3.8 0.00013 28.2 1.7 45 121-167 13-61 (99)
106 1lj9_A Transcriptional regulat 60.3 5.4 0.00019 28.5 2.6 42 122-165 35-76 (144)
107 2a61_A Transcriptional regulat 60.0 4.1 0.00014 29.1 1.9 34 132-165 47-80 (145)
108 3fm5_A Transcriptional regulat 60.0 3.7 0.00012 29.9 1.6 35 132-166 54-88 (150)
109 2hr3_A Probable transcriptiona 59.9 4.3 0.00015 29.2 2.0 44 121-165 40-83 (147)
110 3deu_A Transcriptional regulat 59.5 6 0.0002 29.8 2.8 35 132-166 68-102 (166)
111 4hbl_A Transcriptional regulat 59.4 5.3 0.00018 29.2 2.4 42 122-165 47-88 (149)
112 3hsr_A HTH-type transcriptiona 59.4 4.8 0.00016 29.1 2.2 36 130-165 48-83 (140)
113 3bj6_A Transcriptional regulat 59.3 5.7 0.00019 28.7 2.6 34 132-165 54-87 (152)
114 2eth_A Transcriptional regulat 59.2 4 0.00014 29.9 1.7 34 132-165 58-91 (154)
115 2cyy_A Putative HTH-type trans 59.0 5.7 0.0002 29.7 2.6 49 114-164 5-53 (151)
116 1p6r_A Penicillinase repressor 58.3 6 0.0002 26.6 2.4 46 119-166 12-61 (82)
117 1x19_A CRTF-related protein; m 58.0 3.8 0.00013 34.5 1.6 41 131-172 63-103 (359)
118 3k0l_A Repressor protein; heli 58.0 6.9 0.00024 29.0 2.9 34 132-165 60-93 (162)
119 1xmk_A Double-stranded RNA-spe 57.9 12 0.00042 26.4 4.0 57 115-173 10-67 (79)
120 3lsg_A Two-component response 57.9 3.9 0.00013 28.5 1.4 43 117-159 3-46 (103)
121 2fbh_A Transcriptional regulat 57.6 4 0.00014 29.1 1.4 35 131-165 51-85 (146)
122 2h09_A Transcriptional regulat 57.5 8.6 0.00029 28.4 3.4 46 120-167 44-89 (155)
123 3s2w_A Transcriptional regulat 57.4 6 0.00021 29.1 2.5 36 131-166 63-98 (159)
124 3bdd_A Regulatory protein MARR 57.3 4.8 0.00016 28.6 1.8 35 132-166 45-79 (142)
125 3oop_A LIN2960 protein; protei 57.2 5.9 0.0002 28.5 2.3 35 131-165 50-84 (143)
126 1bl0_A Protein (multiple antib 56.9 3.9 0.00013 29.9 1.3 45 115-159 10-54 (129)
127 3neu_A LIN1836 protein; struct 56.7 25 0.00087 25.8 5.8 55 116-170 17-76 (125)
128 1z7u_A Hypothetical protein EF 56.3 3.4 0.00012 29.7 0.9 35 132-166 35-70 (112)
129 2fsw_A PG_0823 protein; alpha- 56.2 3.7 0.00013 29.2 1.1 36 131-166 37-73 (107)
130 3k2z_A LEXA repressor; winged 56.2 3.8 0.00013 32.2 1.2 37 130-166 22-58 (196)
131 3t8r_A Staphylococcus aureus C 55.5 11 0.00038 28.5 3.7 50 116-165 11-61 (143)
132 3dp7_A SAM-dependent methyltra 55.4 4.9 0.00017 34.2 1.9 40 131-171 49-88 (363)
133 2k9s_A Arabinose operon regula 55.0 6.4 0.00022 27.6 2.1 42 117-158 4-46 (107)
134 3mcz_A O-methyltransferase; ad 54.9 4.8 0.00016 33.6 1.7 39 132-171 56-94 (352)
135 2nyx_A Probable transcriptiona 54.8 5.6 0.00019 29.8 1.9 34 132-165 59-92 (168)
136 2pex_A Transcriptional regulat 54.8 7.5 0.00026 28.2 2.6 35 132-166 61-95 (153)
137 1z91_A Organic hydroperoxide r 54.6 5.6 0.00019 28.5 1.8 34 132-165 54-87 (147)
138 2rdp_A Putative transcriptiona 54.5 7.5 0.00026 27.9 2.5 34 132-165 56-89 (150)
139 3sxy_A Transcriptional regulat 53.1 6.6 0.00023 31.0 2.2 39 128-166 31-69 (218)
140 1jgs_A Multiple antibiotic res 53.1 8 0.00027 27.4 2.4 34 132-165 48-81 (138)
141 3e6m_A MARR family transcripti 51.8 6.7 0.00023 29.0 1.9 36 131-166 66-101 (161)
142 3c7j_A Transcriptional regulat 51.7 6 0.00021 32.2 1.8 50 117-166 31-83 (237)
143 3qqa_A CMER; alpha-helical, he 51.3 3.4 0.00012 30.7 0.2 46 106-151 13-58 (216)
144 2ek5_A Predicted transcription 51.3 12 0.00042 27.9 3.4 40 128-167 23-63 (129)
145 2b0l_A GTP-sensing transcripti 51.2 9.1 0.00031 27.7 2.5 38 129-166 39-77 (102)
146 4ham_A LMO2241 protein; struct 51.1 16 0.00055 27.0 3.9 56 116-171 18-78 (134)
147 3ihu_A Transcriptional regulat 50.7 9 0.00031 30.3 2.6 38 128-165 35-72 (222)
148 3b73_A PHIH1 repressor-like pr 50.4 7.8 0.00027 28.9 2.1 52 115-168 12-65 (111)
149 1s3j_A YUSO protein; structura 50.4 5.9 0.0002 28.7 1.4 34 132-165 51-84 (155)
150 2e1c_A Putative HTH-type trans 50.1 10 0.00036 29.4 2.9 49 114-164 25-73 (171)
151 1fp2_A Isoflavone O-methyltran 48.9 6.2 0.00021 33.2 1.5 42 131-172 50-96 (352)
152 2iu5_A DHAS, YCEG, HTH-type dh 48.6 11 0.00038 27.8 2.7 40 111-150 12-51 (195)
153 2f2e_A PA1607; transcription f 48.0 6 0.0002 30.0 1.1 36 131-166 36-71 (146)
154 3by6_A Predicted transcription 47.4 18 0.00062 26.7 3.7 56 116-171 15-75 (126)
155 3df8_A Possible HXLR family tr 46.3 24 0.00081 25.3 4.1 35 133-167 43-78 (111)
156 1xd7_A YWNA; structural genomi 46.0 20 0.00067 26.9 3.8 55 116-172 9-64 (145)
157 1tc3_C Protein (TC3 transposas 44.6 13 0.00046 21.2 2.1 26 133-158 22-47 (51)
158 1yyv_A Putative transcriptiona 44.3 6.9 0.00024 29.3 1.0 53 111-166 26-83 (131)
159 3ppb_A Putative TETR family tr 44.3 12 0.0004 27.0 2.2 42 109-150 6-47 (195)
160 1okr_A MECI, methicillin resis 44.0 9.4 0.00032 26.9 1.6 51 120-172 14-69 (123)
161 2qvo_A Uncharacterized protein 43.9 9.8 0.00033 26.2 1.6 35 130-164 28-62 (95)
162 3kkc_A TETR family transcripti 43.9 5.2 0.00018 28.8 0.2 42 109-150 9-50 (177)
163 1zk8_A Transcriptional regulat 43.2 11 0.00038 27.3 1.9 43 109-151 5-47 (183)
164 2pq8_A Probable histone acetyl 42.9 14 0.00049 32.2 2.8 41 121-165 198-238 (278)
165 3dcf_A Transcriptional regulat 42.8 10 0.00035 27.9 1.7 43 108-150 27-69 (218)
166 3kp7_A Transcriptional regulat 42.7 9.4 0.00032 27.7 1.4 35 131-165 50-84 (151)
167 1sgm_A Putative HTH-type trans 42.2 13 0.00044 26.8 2.1 41 111-151 5-45 (191)
168 2dg7_A Putative transcriptiona 42.0 14 0.00047 27.2 2.3 41 110-150 5-45 (195)
169 3on2_A Probable transcriptiona 41.9 25 0.00084 25.3 3.6 43 109-151 9-51 (199)
170 2ozu_A Histone acetyltransfera 40.9 21 0.00073 31.3 3.6 41 121-164 203-243 (284)
171 1hsj_A Fusion protein consisti 40.1 11 0.00038 32.8 1.7 42 124-165 412-453 (487)
172 3lwf_A LIN1550 protein, putati 39.8 20 0.00067 28.0 3.0 50 116-165 27-77 (159)
173 3gbg_A TCP pilus virulence reg 39.8 13 0.00044 29.8 1.9 39 116-154 169-207 (276)
174 2di3_A Bacterial regulatory pr 39.2 15 0.00052 29.3 2.3 37 128-164 23-60 (239)
175 3edp_A LIN2111 protein; APC883 39.2 25 0.00085 28.5 3.6 57 115-171 12-73 (236)
176 2pjp_A Selenocysteine-specific 39.2 22 0.00075 26.0 3.0 53 114-168 64-116 (121)
177 2wv0_A YVOA, HTH-type transcri 39.0 32 0.0011 27.9 4.3 56 116-171 14-74 (243)
178 3to7_A Histone acetyltransfera 38.7 51 0.0017 28.8 5.6 50 121-174 198-247 (276)
179 1zg3_A Isoflavanone 4'-O-methy 38.7 9 0.00031 32.3 0.9 35 131-165 44-81 (358)
180 1hw1_A FADR, fatty acid metabo 38.4 29 0.001 27.3 3.8 44 128-171 26-71 (239)
181 4a5n_A Uncharacterized HTH-typ 38.3 16 0.00056 27.7 2.2 37 130-166 37-74 (131)
182 2o03_A Probable zinc uptake re 38.1 21 0.00072 26.3 2.8 45 121-166 16-65 (131)
183 3col_A Putative transcription 38.1 11 0.00038 27.1 1.2 42 109-150 7-48 (196)
184 2kfs_A Conserved hypothetical 38.0 8.8 0.0003 30.6 0.7 25 130-154 29-53 (148)
185 1p4x_A Staphylococcal accessor 38.0 16 0.00055 30.3 2.3 42 124-165 166-207 (250)
186 2rae_A Transcriptional regulat 38.0 16 0.00054 26.9 2.1 44 107-150 12-55 (207)
187 3he0_A Transcriptional regulat 37.7 15 0.0005 26.7 1.8 42 109-150 8-49 (196)
188 3i4p_A Transcriptional regulat 37.6 16 0.00055 27.7 2.1 46 117-164 4-49 (162)
189 1mzb_A Ferric uptake regulatio 37.6 20 0.00069 26.6 2.6 46 121-166 23-73 (136)
190 3him_A Probable transcriptiona 37.6 14 0.00049 26.9 1.8 42 109-150 13-54 (211)
191 3q0w_A HTH-type transcriptiona 37.5 10 0.00034 29.2 0.9 43 109-151 41-83 (236)
192 1z4h_A TORI, TOR inhibition pr 37.5 9 0.00031 25.3 0.5 49 130-184 8-59 (66)
193 2hxi_A Putative transcriptiona 37.2 18 0.00062 28.8 2.4 44 107-150 24-67 (241)
194 3qkx_A Uncharacterized HTH-typ 37.0 10 0.00035 27.3 0.8 38 113-150 9-46 (188)
195 2qtq_A Transcriptional regulat 36.8 19 0.00064 26.4 2.3 43 108-150 12-54 (213)
196 2ou2_A Histone acetyltransfera 36.7 21 0.00072 31.2 2.9 31 132-165 212-242 (280)
197 3dkw_A DNR protein; CRP-FNR, H 36.0 23 0.00079 26.7 2.8 39 132-171 178-216 (227)
198 1bia_A BIRA bifunctional prote 35.8 18 0.00061 30.8 2.3 43 119-163 8-50 (321)
199 2hs5_A Putative transcriptiona 35.6 36 0.0012 27.3 4.0 40 128-167 47-86 (239)
200 2fxa_A Protease production reg 35.2 15 0.00052 28.9 1.7 35 132-166 62-96 (207)
201 1fp1_D Isoliquiritigenin 2'-O- 35.1 11 0.00038 31.9 0.9 33 133-165 63-101 (372)
202 3on4_A Transcriptional regulat 34.8 16 0.00056 26.2 1.7 42 109-150 7-48 (191)
203 2yve_A Transcriptional regulat 34.4 23 0.00079 26.0 2.5 37 115-151 7-43 (185)
204 3p9c_A Caffeic acid O-methyltr 34.1 20 0.00067 30.7 2.3 45 121-165 45-94 (364)
205 2zkz_A Transcriptional repress 33.6 26 0.00087 24.4 2.5 48 132-180 41-90 (99)
206 3e6c_C CPRK, cyclic nucleotide 33.4 22 0.00075 27.7 2.3 41 132-173 177-217 (250)
207 2yu3_A DNA-directed RNA polyme 33.1 35 0.0012 24.9 3.2 54 112-165 33-86 (95)
208 2g9w_A Conserved hypothetical 33.1 27 0.00091 25.6 2.6 46 120-166 13-62 (138)
209 2iai_A Putative transcriptiona 33.1 14 0.00047 28.3 1.0 44 107-150 25-68 (230)
210 2hxo_A Putative TETR-family tr 33.0 34 0.0012 27.0 3.4 44 108-151 12-55 (237)
211 4ev0_A Transcription regulator 33.0 28 0.00096 26.0 2.8 40 131-171 162-201 (216)
212 3nrg_A TETR family transcripti 32.8 20 0.00069 26.3 1.9 42 110-151 11-52 (217)
213 1ft9_A Carbon monoxide oxidati 32.7 34 0.0012 26.0 3.3 37 132-168 163-199 (222)
214 1p4x_A Staphylococcal accessor 32.4 29 0.001 28.7 3.0 44 122-165 40-83 (250)
215 3ccy_A Putative TETR-family tr 32.3 33 0.0011 25.3 3.1 43 109-151 11-53 (203)
216 4a6d_A Hydroxyindole O-methylt 32.2 23 0.00077 30.1 2.4 36 130-165 41-76 (353)
217 3hrs_A Metalloregulator SCAR; 31.6 26 0.00088 28.0 2.5 39 129-167 17-55 (214)
218 3ic7_A Putative transcriptiona 31.4 14 0.00048 27.3 0.8 52 116-167 15-70 (126)
219 3vp5_A Transcriptional regulat 31.2 18 0.00063 26.8 1.5 38 113-150 13-50 (189)
220 1jko_C HIN recombinase, DNA-in 31.1 16 0.00055 21.3 0.9 22 133-154 22-43 (52)
221 2dg8_A Putative TETR-family tr 31.0 19 0.00066 26.4 1.5 40 111-150 8-47 (193)
222 2la4_A Nuclear and cytoplasmic 30.5 28 0.00095 23.6 2.2 37 20-56 1-37 (101)
223 3bru_A Regulatory protein, TET 30.5 23 0.0008 26.2 1.9 41 110-150 28-68 (222)
224 1uly_A Hypothetical protein PH 30.2 28 0.00097 27.6 2.5 44 119-165 23-66 (192)
225 3egq_A TETR family transcripti 29.6 24 0.00083 25.1 1.8 37 115-151 7-43 (170)
226 2pjp_A Selenocysteine-specific 29.5 25 0.00085 25.6 1.9 53 116-171 7-59 (121)
227 3kz9_A SMCR; transcriptional r 29.4 24 0.00083 25.5 1.8 39 112-150 17-55 (206)
228 3dv8_A Transcriptional regulat 29.3 11 0.00039 28.4 -0.0 39 132-171 169-207 (220)
229 3f8m_A GNTR-family protein tra 29.3 41 0.0014 27.4 3.4 44 128-171 31-75 (248)
230 2g7l_A TETR-family transcripti 28.9 28 0.00096 27.7 2.3 43 109-151 16-58 (243)
231 3lwj_A Putative TETR-family tr 28.7 12 0.00042 27.3 0.1 41 110-150 10-50 (202)
232 3rd3_A Probable transcriptiona 28.7 23 0.00078 25.5 1.6 43 109-151 7-49 (197)
233 3o60_A LIN0861 protein; PSI, M 28.3 12 0.00042 28.3 0.0 44 107-150 14-58 (185)
234 3knw_A Putative transcriptiona 28.1 15 0.00052 27.0 0.5 42 109-150 11-52 (212)
235 1d5y_A ROB transcription facto 28.1 16 0.00055 29.4 0.7 43 116-158 3-45 (292)
236 1lva_A Selenocysteine-specific 28.0 41 0.0014 27.7 3.2 58 114-171 139-196 (258)
237 2qc0_A Uncharacterized protein 27.5 33 0.0011 29.9 2.6 37 132-168 311-347 (373)
238 3cwr_A Transcriptional regulat 27.1 16 0.00056 26.5 0.5 41 111-151 16-56 (208)
239 2hku_A A putative transcriptio 27.0 22 0.00075 26.5 1.2 43 107-150 15-57 (215)
240 1y6u_A XIS, excisionase from t 27.0 15 0.0005 25.3 0.2 24 131-154 15-38 (70)
241 2qib_A TETR-family transcripti 26.6 18 0.0006 27.8 0.6 38 113-150 14-51 (231)
242 4fx0_A Probable transcriptiona 26.2 27 0.00093 25.8 1.6 35 131-165 51-85 (148)
243 2k4b_A Transcriptional regulat 26.2 20 0.00067 25.9 0.8 44 121-166 40-87 (99)
244 3f0c_A TETR-molecule A, transc 26.2 28 0.00094 25.7 1.7 42 109-150 8-49 (216)
245 3b02_A Transcriptional regulat 26.0 30 0.001 25.8 1.9 41 132-173 139-179 (195)
246 1fx7_A Iron-dependent represso 25.9 15 0.00052 29.5 0.1 35 133-167 25-59 (230)
247 2zcw_A TTHA1359, transcription 25.9 35 0.0012 25.5 2.2 41 132-173 146-186 (202)
248 3e97_A Transcriptional regulat 25.8 46 0.0016 25.3 2.9 39 132-171 175-213 (231)
249 3dew_A Transcriptional regulat 25.8 24 0.00081 25.5 1.2 40 112-151 8-47 (206)
250 3bqz_B HTH-type transcriptiona 25.7 26 0.00087 25.3 1.4 37 115-151 5-41 (194)
251 2fe3_A Peroxide operon regulat 25.1 48 0.0016 24.8 2.9 46 121-167 27-77 (145)
252 2g7s_A Transcriptional regulat 24.8 22 0.00077 25.4 0.9 37 114-150 10-46 (194)
253 3bni_A Putative TETR-family tr 24.8 16 0.00054 28.0 0.0 42 109-150 40-81 (229)
254 3mwm_A ZUR, putative metal upt 24.8 44 0.0015 24.9 2.6 45 121-166 19-68 (139)
255 2opt_A Actii protein; helical 24.8 33 0.0011 27.3 2.0 43 109-151 3-45 (234)
256 3qbm_A TETR transcriptional re 24.7 13 0.00044 26.9 -0.4 38 114-151 9-46 (199)
257 2bgc_A PRFA; bacterial infecti 24.4 27 0.00092 27.0 1.3 39 132-171 169-208 (238)
258 3lhq_A Acrab operon repressor 24.2 17 0.00059 26.5 0.2 41 111-151 13-53 (220)
259 2w57_A Ferric uptake regulatio 24.2 34 0.0012 25.9 1.8 46 121-166 22-72 (150)
260 3nxc_A HTH-type protein SLMA; 24.2 36 0.0012 24.9 1.9 43 109-151 21-64 (212)
261 2jn6_A Protein CGL2762, transp 24.2 23 0.0008 24.3 0.9 65 119-190 12-76 (97)
262 1ug2_A 2610100B20RIK gene prod 24.2 31 0.0011 25.7 1.5 42 119-160 42-88 (95)
263 3s5r_A Transcriptional regulat 24.1 26 0.0009 25.7 1.2 43 109-151 7-49 (216)
264 3eet_A Putative GNTR-family tr 24.0 64 0.0022 26.7 3.7 56 115-170 32-92 (272)
265 1z0x_A Transcriptional regulat 23.9 41 0.0014 25.9 2.3 40 112-151 5-45 (220)
266 2qlz_A Transcription factor PF 23.9 34 0.0012 28.3 1.9 41 131-171 177-217 (232)
267 3u1d_A Uncharacterized protein 23.7 47 0.0016 26.2 2.6 45 121-165 34-79 (151)
268 1sd4_A Penicillinase repressor 23.6 35 0.0012 24.0 1.7 45 120-166 14-62 (126)
269 2oz6_A Virulence factor regula 23.5 28 0.00095 25.9 1.2 35 132-166 164-198 (207)
270 2f07_A YVDT; helix-turn-helix, 23.4 38 0.0013 25.0 2.0 40 111-150 9-48 (197)
271 2guh_A Putative TETR-family tr 23.3 22 0.00075 27.2 0.6 43 109-151 36-78 (214)
272 2fq4_A Transcriptional regulat 23.3 22 0.00076 26.1 0.6 38 113-150 13-50 (192)
273 3ni7_A Bacterial regulatory pr 23.2 32 0.0011 26.4 1.6 41 110-150 5-45 (213)
274 3lsj_A DEST; transcriptional r 22.9 22 0.00076 26.4 0.5 41 111-151 10-51 (220)
275 3kcc_A Catabolite gene activat 22.8 89 0.003 24.6 4.2 36 132-167 217-252 (260)
276 3f1b_A TETR-like transcription 22.8 28 0.00097 25.1 1.1 39 113-151 15-53 (203)
277 2xig_A Ferric uptake regulatio 22.8 53 0.0018 24.8 2.7 45 121-166 32-81 (150)
278 4aci_A HTH-type transcriptiona 22.7 15 0.0005 26.7 -0.5 44 108-151 10-53 (191)
279 3mvp_A TETR/ACRR transcription 22.5 22 0.00077 26.0 0.5 43 109-151 23-65 (217)
280 2p5k_A Arginine repressor; DNA 22.5 50 0.0017 20.5 2.2 37 123-165 12-53 (64)
281 3aqt_A Bacterial regulatory pr 22.4 20 0.00067 27.8 0.2 43 109-151 43-85 (245)
282 2g7g_A RHA04620, putative tran 22.3 34 0.0012 26.3 1.6 40 110-151 9-48 (213)
283 2v57_A TETR family transcripti 22.3 33 0.0011 24.7 1.4 40 109-150 11-50 (190)
284 2p4w_A Transcriptional regulat 22.1 49 0.0017 26.6 2.5 42 121-165 20-61 (202)
285 2v7f_A RPS19, RPS19E SSU ribos 22.0 36 0.0012 26.6 1.6 45 120-167 58-116 (150)
286 1hqc_A RUVB; extended AAA-ATPa 21.9 53 0.0018 26.4 2.7 54 114-167 245-300 (324)
287 3ryp_A Catabolite gene activat 21.7 93 0.0032 22.9 3.9 36 132-167 167-202 (210)
288 3iwz_A CAP-like, catabolite ac 21.5 32 0.0011 26.0 1.2 35 132-166 187-221 (230)
289 3jsj_A Putative TETR-family tr 21.5 41 0.0014 24.3 1.8 40 110-150 7-46 (190)
290 1o57_A PUR operon repressor; p 21.5 43 0.0015 28.5 2.1 70 121-190 12-92 (291)
291 2qq9_A Diphtheria toxin repres 21.4 31 0.0011 27.6 1.2 36 132-167 24-59 (226)
292 1vi0_A Transcriptional regulat 21.0 33 0.0011 25.7 1.2 41 110-150 6-46 (206)
293 3bwg_A Uncharacterized HTH-typ 20.9 71 0.0024 25.7 3.3 50 116-165 9-62 (239)
294 3vpr_A Transcriptional regulat 20.9 37 0.0013 24.7 1.4 35 116-150 7-41 (190)
295 4aik_A Transcriptional regulat 20.9 46 0.0016 24.6 2.0 34 132-165 46-79 (151)
296 2q24_A Putative TETR family tr 20.6 42 0.0014 24.5 1.7 39 111-150 14-52 (194)
297 2gen_A Probable transcriptiona 20.6 42 0.0014 24.8 1.7 40 111-150 6-45 (197)
298 2gqq_A Leucine-responsive regu 20.5 10 0.00035 28.7 -1.8 48 115-164 12-59 (163)
299 1ui5_A A-factor receptor homol 20.5 44 0.0015 25.2 1.8 42 109-150 6-47 (215)
300 2y2z_A SIM16, SIMR, putative r 20.4 38 0.0013 27.6 1.5 41 111-151 26-66 (267)
301 2o7t_A Transcriptional regulat 20.4 40 0.0014 24.7 1.5 37 115-151 11-47 (199)
302 1zyb_A Transcription regulator 20.0 65 0.0022 24.7 2.7 39 132-171 186-224 (232)
No 1
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.95 E-value=9.1e-29 Score=180.02 Aligned_cols=72 Identities=44% Similarity=0.737 Sum_probs=65.4
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCC-eeeEeeehhhHhhhhcceeecCCCceEEecccc
Q 045382 106 AYSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGV-ERRRIYDIVNVLESVGVLTRRAKNKYTWKGFKA 177 (191)
Q Consensus 106 ~~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V-~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G~~~ 177 (191)
..+|+++||+.||++||++|.+++++.++|+++|++|+| +|||||||+|||||||||+|.+||.|+|+|++.
T Consensus 4 ~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~~ 76 (76)
T 1cf7_A 4 TPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGP 76 (76)
T ss_dssp --CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC----
T ss_pred CCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCCC
Confidence 578999999999999999999999999999999999999 999999999999999999999999999999863
No 2
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.37 E-value=5.1e-14 Score=106.55 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEecccc
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKGFKA 177 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G~~~ 177 (191)
++.+++..+|..|.+.++.. ..+. .......|||+||++|||+++|||+| .++.|+|+|+++
T Consensus 30 ty~eVAdeLV~e~~~~~~~~-~~~~-~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~i~W~g~~~ 91 (95)
T 1cf7_B 30 SYNEVADELVSEFTNSNNHL-AADS-AYDQKNIRRRVYDALNVLMAMNIISK-EKKEIKWIGLPT 91 (95)
T ss_dssp CHHHHHHHHHHHHHTCTTCC-GGGS-HHHHHHHHHHHHHHHHHHHHTTSBCC-CSSCEEBCCCC-
T ss_pred cHHHHHHHHHHHHhcccccC-ccch-hcccccchhhHHHHHHHHHHhcceec-CCCEEEEecCCc
Confidence 45888888888887765543 2221 22345589999999999999999999 699999999875
No 3
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.20 E-value=0.058 Score=37.90 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=45.7
Q ss_pred HHHHHHHhhCC-CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 119 SNFLSLYNRDG-VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 119 ~kFI~l~~~~~-~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
++.+.++.+.+ +..++..++|++||+.++-+.-.+.-|+.-|+|.+.+.+.=.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 66777777665 5679999999999999999999999999999999976554556
No 4
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.39 E-value=0.087 Score=35.76 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCce
Q 045382 117 LCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKY 170 (191)
Q Consensus 117 Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y 170 (191)
.-.+.++++.++ +..+++.++|+.|++.|--++-+++.|+.-|+|....+..|
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 345677777653 24699999999999999999999999999999987544444
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.18 E-value=0.097 Score=37.42 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCC-CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 118 CSNFLSLYNRDG-VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 118 t~kFI~l~~~~~-~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
-++.++++.+++ +..++..++|.+||+.|+-+.-.+.-|+.-|+|.+.+.+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 456777776554 56799999999999999999999999999999998765545663
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=91.86 E-value=0.15 Score=37.01 Aligned_cols=57 Identities=11% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEec
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKG 174 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G 174 (191)
..+.++.+.++..++ ++..++|.+||+.|.-++=.++-||.=|+|.+..-+--+|.=
T Consensus 16 ~~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp HHHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 677889999988543 999999999999988888888999999999999888899953
No 7
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=91.84 E-value=0.11 Score=36.05 Aligned_cols=44 Identities=14% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhccee
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLT 163 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~ 163 (191)
++.++++.++ ++.+++..++.++||.|--+||+++=|+.=|||.
T Consensus 13 ~~lL~yIr~s-GGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNN-GGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHT-TSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 5667777776 4689999999999999999999999999999986
No 8
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=89.52 E-value=0.6 Score=34.38 Aligned_cols=67 Identities=21% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC--CceEEecccchHHHHHHHHHHh
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK--NKYTWKGFKAIRGALQELKVLL 189 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K--n~y~W~G~~~I~~tLekLk~Ei 189 (191)
.+.++... +.+++.++|+.||+.+--++-.++.|+..|+|.+... ..+.......+...++.+.+.+
T Consensus 47 IL~~L~~~--~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~ 115 (122)
T 1u2w_A 47 ITYALCQD--EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHK 115 (122)
T ss_dssp HHHHHHHS--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHHh
Confidence 44455433 3589999999999999999999999999999976533 3455556666666666665544
No 9
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.41 E-value=0.38 Score=35.70 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+..+...+..-++..++|+.+++.+-.+|-.++.|+..|+|.+.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4555555554323999999999999999999999999999999885
No 10
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.25 E-value=0.4 Score=32.78 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
+.+.++... ..++..++|+.+++.+.-++-.++.|+.-|+|.+
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455566554 3489999999999999999999999999999984
No 11
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=88.02 E-value=1.2 Score=30.35 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=43.8
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCc--eEEecccchHHHHHHHH
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNK--YTWKGFKAIRGALQELK 186 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~--y~W~G~~~I~~tLekLk 186 (191)
.+.++.. +..+++.++|+.+++.+--++-.++.|+..|+|.+...+. +...-...+...++.+.
T Consensus 29 il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~ 94 (99)
T 3cuo_A 29 ILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLK 94 (99)
T ss_dssp HHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 4444433 3468999999999999999999999999999998754333 33333333444444433
No 12
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=87.69 E-value=0.55 Score=33.53 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCc--eEEecccchHHHHHHHHHHh
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNK--YTWKGFKAIRGALQELKVLL 189 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~--y~W~G~~~I~~tLekLk~Ei 189 (191)
.+.++.. ..+++.++|+.+++.+--++-.++.|+..|+|.+...+. |.-.....+...++.+...+
T Consensus 31 IL~~L~~---~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~ 98 (106)
T 1r1u_A 31 IMELLSV---SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHA 98 (106)
T ss_dssp HHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHHH
Confidence 4444442 347999999999999999999999999999998654433 33344555666666665544
No 13
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=87.47 E-value=1.5 Score=30.76 Aligned_cols=57 Identities=11% Similarity=0.235 Sum_probs=43.2
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC--CceEEecccchHHHHHHHHHH
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK--NKYTWKGFKAIRGALQELKVL 188 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K--n~y~W~G~~~I~~tLekLk~E 188 (191)
..++.++|+.+|+.+--++--++.|+..|+|.+... ..|.-.....+...++.+.+.
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~~ 94 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYTI 94 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHHH
Confidence 489999999999999999999999999999976533 333334445566666655543
No 14
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=86.95 E-value=0.72 Score=33.94 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhC-CCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 117 LCSNFLSLYNRD-GVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 117 Lt~kFI~l~~~~-~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+-+.+.++... ++..++..++|+.+++.++-++.|++.|+..|+|+..
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 344455555443 3567999999999999999999999999999999876
No 15
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=86.65 E-value=0.99 Score=32.48 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=40.5
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE--ecccchHHHHHHH
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW--KGFKAIRGALQEL 185 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W--~G~~~I~~tLekL 185 (191)
+.+++.++|+.+++.+.-++-.++.|+..|+|++...+...+ .....+...++.|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALV 93 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 458999999999999999999999999999998654443333 3333444444433
No 16
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=86.59 E-value=1.2 Score=30.93 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=42.8
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC--CceEEecccchHHHHHHHHH
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK--NKYTWKGFKAIRGALQELKV 187 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K--n~y~W~G~~~I~~tLekLk~ 187 (191)
+.+++.++|+.+|+.+--++--++.|+..|+|.+... ..|.......+...++.+.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999976543 33444444555555544443
No 17
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=86.46 E-value=0.18 Score=44.23 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=36.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKG 174 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G 174 (191)
..+..++|+.+|+.+.++|++++.|+..|+|.+...+...|.=
T Consensus 32 ~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~a 74 (342)
T 3qph_A 32 PSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAA 74 (342)
T ss_dssp HHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEE
Confidence 4677889999999999999999999999999887555555653
No 18
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=84.71 E-value=0.63 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=33.2
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++..++|+.+++.+--++-+++.|+.-|+|.+..
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 358999999999999999999999999999998763
No 19
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.55 E-value=1.2 Score=32.96 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=46.6
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec--CCCceEEecccchHHHHHHHHHHh
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR--AKNKYTWKGFKAIRGALQELKVLL 189 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~--~Kn~y~W~G~~~I~~tLekLk~Ei 189 (191)
+..++.++|+.|++.+--++-.++.|+..|+|.+. ++..|.......+...++.+.+.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~~~~ 118 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHL 118 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999764 333455556666777777776654
No 20
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.82 E-value=0.76 Score=31.37 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=36.7
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+.++... ..++..++|+.+++.+--+|.+++.|+.-|+|.+.
T Consensus 24 ~il~~l~~~--~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 24 RIYSLLLER--GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344555443 34899999999999999999999999999999885
No 21
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.88 E-value=1.5 Score=31.33 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=40.6
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCc-eEE-ecccchHHHHHHHHHH
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNK-YTW-KGFKAIRGALQELKVL 188 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~-y~W-~G~~~I~~tLekLk~E 188 (191)
..++.++|+.|++.+--++-.++.||..|+|.+...+. +.+ ..-..+...++.+...
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 103 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAIYH 103 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHHHH
Confidence 48999999999999999999999999999997653332 222 2223444455544443
No 22
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.24 E-value=1.1 Score=31.52 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKN 168 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn 168 (191)
+.+.++.. +.+++.++|+.+++.+--++-.++.|+.-|+|.+...+
T Consensus 25 ~IL~~L~~---~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 25 EILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 34555532 24899999999999999999999999999999875333
No 23
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=81.46 E-value=1.8 Score=36.28 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEecc
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKGF 175 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G~ 175 (191)
..+++|...+ ..+++.++|+.+|+.|=-+|-+++.|+..|++.+.....| ..|.
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y-~LG~ 87 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL-RIGP 87 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE-EECT
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE-EehH
Confidence 3556666654 4699999999999999999999999999999999864444 3564
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.35 E-value=1 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++... +.+++.++|+.+++.+--++-.++.|+.-|+|++.
T Consensus 21 iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 21 IMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44444433 35899999999999999999999999999999864
No 25
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=81.25 E-value=0.64 Score=32.49 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+.++ . ..+++.++|+.+++.+--++-.++.|+..|+|.+.. +.|..
T Consensus 35 ~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 344555 3 348999999999999999999999999999999876 55544
No 26
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=80.91 E-value=3.1 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=33.0
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.+++.++|+.+++.+=-++.+++.|+.-|+|++.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45999999999999999999999999999999985
No 27
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=80.19 E-value=1 Score=32.29 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
++.++...++..+++.++|+.+++.+--+.-+++-|+.-|+|++.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 445555555446999999999999999999999999999999886
No 28
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=80.05 E-value=1 Score=32.33 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+.++...++..+++.++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3445555665567999999999999999999999999999999986
No 29
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.40 E-value=1 Score=30.47 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++++.+.++..+++.++++.+ ++.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35566655432469999999999 999999999999999999998863
No 30
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=74.46 E-value=3.5 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec--CCCceEEecccc
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR--AKNKYTWKGFKA 177 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~--~Kn~y~W~G~~~ 177 (191)
.+.+.||++++.+ ..+.|+++|..|++..==.-|=++-|+..|.++=. .+++|.++.-+.
T Consensus 7 ~ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 7 GFLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp CHHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 3558999999998 56999999999999765555667777877776542 356677766543
No 31
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=74.40 E-value=1.4 Score=33.43 Aligned_cols=43 Identities=9% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|....+++|.+.+-..++++++|++.||.|.-||-
T Consensus 25 r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 25 QNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 4555667888999999999887889999999999998888873
No 32
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=74.15 E-value=3.7 Score=29.43 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 112 KSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 112 KSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+|-..+.-..+..+.. + +...++|..+++..|.+-.+++.|+.-|+|++. .+.|.-
T Consensus 4 Rs~~eIi~~IL~~i~~---~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~-~~~~~L 59 (95)
T 1r7j_A 4 KSKLEIIQAILEACKS---G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE-GKQYML 59 (95)
T ss_dssp CCHHHHHHHHHHHHTT---C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCHHHHHHHHHHHHHc---C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE-CCeeEE
Confidence 4556677777777762 2 899999999999999999999999999999998 444554
No 33
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.84 E-value=1.9 Score=31.42 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
++.++...++..++..++|+.+++.+=-+.-+++-|+.-|+|.+.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 444455554467999999999999999999999999999999884
No 34
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=73.43 E-value=2.3 Score=35.60 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEec
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKG 174 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G 174 (191)
.....+.+..+..++ .+++.++|+.+++.+--++-+++.|+..|+|++.+.......+
T Consensus 151 ~~~~~~IL~~L~~~~--~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT 208 (244)
T 2wte_A 151 SREEMKLLNVLYETK--GTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELN 208 (244)
T ss_dssp CHHHHHHHHHHHHHT--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEEC
T ss_pred CHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEEC
Confidence 344456666665443 4899999999999999999999999999999997554444444
No 35
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=73.35 E-value=2.2 Score=37.00 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcc-eeecCCCceEEecc
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGV-LTRRAKNKYTWKGF 175 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgL-I~K~~Kn~y~W~G~ 175 (191)
++.++++.++.+..++-.++|++|++.|+-++.-++.|+..|+ |......-|+....
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 5677788765566799999999999999999999999999998 55444456777663
No 36
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=73.15 E-value=1.6 Score=37.46 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=38.1
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCc-eEE
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNK-YTW 172 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~-y~W 172 (191)
++.+++.++|+++++..+.++-++.+|.++|++++...+. |.-
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 4579999999999999999999999999999999976666 543
No 37
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=72.92 E-value=1.9 Score=31.44 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec--CCCceEEecccchHHHHHH
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR--AKNKYTWKGFKAIRGALQE 184 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~--~Kn~y~W~G~~~I~~tLek 184 (191)
+.+.++... ..++.++|+.|++.+--++-.++.|+..|+|.+. ++..|.......+...++.
T Consensus 25 ~IL~~L~~~---~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~ 88 (118)
T 2jsc_A 25 RILVALLDG---VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGE 88 (118)
T ss_dssp HHHHHHHTT---CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHH
Confidence 345555432 3688899999999999999999999999999764 3333444444444444433
No 38
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=72.87 E-value=2.6 Score=30.80 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=33.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+++.++|+.+++.+--+.-+++.|+.-|+|.+...
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 489999999999999999999999999999998743
No 39
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=72.53 E-value=1.4 Score=36.53 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.2
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+++.++|+++++..+.++-++++|.++|++++...+.|.=
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 468999999999999999999999999999999876665554
No 40
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=72.52 E-value=1.2 Score=37.09 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=38.1
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+++.++|.++++..+.++-++..|.++|++++..++.|.-
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 469999999999999999999999999999999987776664
No 41
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=72.42 E-value=1.6 Score=31.85 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+.++...++..++..++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 3444444444569999999999999999999999999999999873
No 42
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.31 E-value=2.7 Score=30.27 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..++.++.+..+.-|+..+++.++++.+.-+-=|+.-||.-|+|.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45666666655556999999999999999999999999999999853
No 43
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=72.25 E-value=2.6 Score=33.15 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcc-eeecCCCceEEecc
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGV-LTRRAKNKYTWKGF 175 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgL-I~K~~Kn~y~W~G~ 175 (191)
.+.+.++.+++ ..++..++|++|+|.+|-+|.=++.|+..|+ |... ..-|.+...
T Consensus 24 ~~Il~~L~~~~-~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~~ 79 (187)
T 1j5y_A 24 KSIVRILERSK-EPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECCTT
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEECCc
Confidence 34556666543 3599999999999999999999999999999 8764 345666544
No 44
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=72.22 E-value=4.4 Score=28.97 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
.++..++|..+. ++..+...++|.+||+.|+-+=-++.-|+.=|.+.+...+--.|.
T Consensus 14 ~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 14 FSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp HHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 455556666444 335599999999999999988888999999999999988888884
No 45
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=71.76 E-value=1.6 Score=36.84 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=36.9
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
.+.+++.++|+++++..+.++-++.+|.++|++++ ..+.|.=
T Consensus 53 ~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 53 DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 35799999999999999999999999999999998 5565554
No 46
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=71.64 E-value=3.3 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC-CceEEecc
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK-NKYTWKGF 175 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K-n~y~W~G~ 175 (191)
..++++...+ ..+++.++|+.+|+.|=-+|-+++.|+..|+|.+... ..| ..|.
T Consensus 10 ~iL~~l~~~~-~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y-~lg~ 64 (241)
T 2xrn_A 10 SIMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF-RLGP 64 (241)
T ss_dssp HHHHHHHTCT-TCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE-EECS
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE-EECH
Confidence 3455565543 3689999999999999999999999999999999754 445 4453
No 47
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.03 E-value=5.5 Score=29.64 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
|..+-++.+.++..+ ..++..++|+.+|+.+..+...++-|+.-|+|.+
T Consensus 7 ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSEN--SRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344556788888765 4599999999999999999999999999999986
No 48
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.66 E-value=4.4 Score=30.18 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.+-.+.+.++..+ ..++..++|+.+|+.+.-+...++-|+.-|+|.+
T Consensus 5 ~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 5 QIDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3445677777765 3589999999999999999999999999999986
No 49
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=70.41 E-value=3.1 Score=31.64 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC-CCceEE
Q 045382 118 CSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA-KNKYTW 172 (191)
Q Consensus 118 t~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~-Kn~y~W 172 (191)
+-+.+-++...++..+++.++|+.+++..+-+..|+..|...|+|+... .+-|..
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L 71 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGL 71 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEE
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEe
Confidence 3444444444455689999999999999999999999999999997643 344443
No 50
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.12 E-value=2.7 Score=32.74 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=43.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.+...|..+-.+.+..+..++ .++..++|+++|+.+--+...++-|+.-|+|.+
T Consensus 10 ~~~~~ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 10 SSEIHLDDLDRNILRLLKKDA--RLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp ----CCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 344446666778888887764 589999999999999999999999999999976
No 51
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=69.83 E-value=3.8 Score=33.40 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEecc
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKGF 175 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G~ 175 (191)
+.++++...+ ..+++.++|+.+++.|=-+|-+++.|+..|+|.+.....| ..|.
T Consensus 12 ~iL~~l~~~~-~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y-~lg~ 65 (249)
T 1mkm_A 12 EILDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRY-VPGY 65 (249)
T ss_dssp HHHHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCE-EECT
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcE-EECH
Confidence 3455665543 3589999999999999999999999999999999833445 3453
No 52
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=69.70 E-value=2.3 Score=35.13 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=42.0
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC-CceEEecc
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK-NKYTWKGF 175 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K-n~y~W~G~ 175 (191)
.++++... +..+++.++|+.+|+.|=-+|-+++.|+..|++.+... +.| ..|.
T Consensus 11 IL~~l~~~-~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y-~lG~ 64 (260)
T 3r4k_A 11 LLTYFNHG-RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSY-RLGP 64 (260)
T ss_dssp HHTTCBTT-BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEE-EECT
T ss_pred HHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcE-EcCH
Confidence 34444443 35799999999999999999999999999999999865 444 4453
No 53
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=68.62 E-value=5.2 Score=28.90 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+.++.+ +.+++.++|+.+|+.+--+.--+++|+..|+|.+...+...+
T Consensus 22 ~Il~~L~~---~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 22 AVLGRLSR---GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHHT---CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 34455542 458999999999999999999999999999997654443333
No 54
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=68.49 E-value=2.3 Score=35.05 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=36.4
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
..+++.++|+.+|+.|--+|-+++.|+..|++.+...+.|.
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~ 77 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYS 77 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeEE
Confidence 46999999999999999999999999999999997655443
No 55
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=68.39 E-value=1.7 Score=35.83 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=35.5
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
+.+++.++|+++++..++++-++++|.++|++++. .+.|.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~ 77 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYR 77 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEe
Confidence 57999999999999999999999999999999874 45554
No 56
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=68.31 E-value=3.5 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=34.3
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+..+++.++|+.+++.+=-+.-+++.||.-|+|.+..
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 4569999999999999999999999999999999875
No 57
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=68.00 E-value=2.9 Score=28.91 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=38.4
Q ss_pred hHHHHHHHH--HHHhhCCCceecHHHHHHHhCCeeeE-eeehhhHhhhhcceee
Q 045382 114 LGLLCSNFL--SLYNRDGVESIGLDDAASKLGVERRR-IYDIVNVLESVGVLTR 164 (191)
Q Consensus 114 L~~Lt~kFI--~l~~~~~~~~i~L~~aA~~L~V~rRR-IYDIiNVLEslgLI~K 164 (191)
++.+.+.+. .++...+ ..+++.++|+.+++.+=- ++-+++-|+.-|+|.+
T Consensus 11 ~g~~~~~l~~L~~l~~~~-~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 11 FGHLIRILPTLLEFEKKG-YEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEE
T ss_pred hhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeec
Confidence 455544433 3334443 258999999999999999 9999999999999983
No 58
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=67.93 E-value=2.8 Score=30.28 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=31.9
Q ss_pred ecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 133 IGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 133 i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 999999999999999999999999999999985
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.81 E-value=3.6 Score=29.14 Aligned_cols=43 Identities=7% Similarity=0.313 Sum_probs=36.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+..+...+ .+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 38 iL~~l~~~~--~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAKSG--KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHSC--SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 444444443 5999999999999999999999999999999885
No 60
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.31 E-value=3.6 Score=33.98 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhh-HhhhhcceeecCCC
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVN-VLESVGVLTRRAKN 168 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiN-VLEslgLI~K~~Kn 168 (191)
+..+-++++..+....+..+++..+|+.||+.+..+|+.+. .|...|+|.+..++
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 34454667766655466779999999999999999999999 99999999887654
No 61
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=67.22 E-value=2.9 Score=29.73 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhc
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVG 160 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslg 160 (191)
....+++.++.++....++++++|+.+|+.+|.|.-++.-.-++.
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 456788899988877789999999999999888887776554443
No 62
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.16 E-value=3.1 Score=29.26 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+..++++.+. +.+++.++|+.|+|..==|---+|.||.-|++.|.
T Consensus 5 ~~Il~~L~~~--g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALR--GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHS--CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4566777766 46999999999999744444468999999999997
No 63
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=67.01 E-value=2.2 Score=30.19 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhc
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVG 160 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslg 160 (191)
.+..+++.++.++....++++++|+.+|+.+|.|+-++.-.-++.
T Consensus 5 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 5 PIIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 356778888888777789999999999999998888776555443
No 64
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=66.89 E-value=2.4 Score=31.68 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=34.2
Q ss_pred HHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 122 LSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 122 I~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+.++...++..+++.++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 52 L~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 334444333569999999999999999999999999999999863
No 65
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=66.73 E-value=2.2 Score=35.89 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=36.0
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCC--ceEE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKN--KYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn--~y~W 172 (191)
+.+++.++|+++++..+.++-++.+|.++|++++...+ .|.-
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 45899999999999999999999999999999986555 5554
No 66
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=66.45 E-value=5.4 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.+.+.++..++ .++..++|+.+|+.+--+...++-|+.-|+|.+
T Consensus 6 ~~il~~L~~~~--~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNA--KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCT--TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 45667776553 589999999999999999999999999999987
No 67
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=66.30 E-value=5.4 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 117 LCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 117 Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+-+.+.++..+++..++..++|+.+++.+.-+.-|++.|..-|+|+-.
T Consensus 13 yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 13 VAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4445555665555678999999999999999999999999999999654
No 68
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=65.35 E-value=4.5 Score=29.04 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..+.++...+ ++..++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 42 ~iL~~l~~~~---~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEES---LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444454443 9999999999999999999999999999998863
No 69
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=64.96 E-value=3 Score=31.04 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=38.2
Q ss_pred HHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 122 LSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 122 I~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+.++...+++.++..++|+.+++.+=-+--+++-||.-|+|+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 344444556789999999999999999999999999999999863
No 70
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=64.93 E-value=4.5 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+.++...+ .++..++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 42 vL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQR--GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 444444443 48999999999999999999999999999999863
No 71
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.83 E-value=2.9 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999886
No 72
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=64.67 E-value=3.9 Score=28.76 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=35.2
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC---CCceEEe
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA---KNKYTWK 173 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~---Kn~y~W~ 173 (191)
+..+++.++|+.|||..--+..=++.||.-|+|.+.. .-.-+|.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~ 68 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWR 68 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHH
Confidence 4579999999999998666777899999999998862 2345564
No 73
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=64.62 E-value=4.1 Score=30.89 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
|...-.+.+.++..++ .++..++|+.+|+.+.-+...++-|+.-|+|.+
T Consensus 8 ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENG--RLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 4455567888887664 489999999999999999999999999999986
No 74
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=64.54 E-value=3.4 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=39.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++++... ...+++.++|+.+|+.|=-+|-+++.|+..|++.+.. ..|.
T Consensus 19 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y~ 67 (257)
T 2g7u_A 19 VLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRWS 67 (257)
T ss_dssp HHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEEE
Confidence 34444433 3568999999999999999999999999999999874 4453
No 75
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=64.51 E-value=3 Score=30.03 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhH
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNV 155 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNV 155 (191)
.+..+++.++.++....++++++|+.+|+.+|.|.-++.-
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 7 NMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3678889999888878899999999999999988877654
No 76
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=64.16 E-value=4.1 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.+..+...+ .++..++|+.+++.+--+.-+++-|+.-|+|++
T Consensus 46 iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYSTP--GISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 344444443 499999999999999999999999999999998
No 77
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=64.07 E-value=2.7 Score=29.56 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhc
Q 045382 117 LCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVG 160 (191)
Q Consensus 117 Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslg 160 (191)
+..+.++++.++....++++++|+.+|+.+|.|.-++.-..++.
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 45677888887777779999999999999988888777554443
No 78
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=63.95 E-value=3.7 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+..+...+ .+++.++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 44 ~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 44 RIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444455544 6999999999999999999999999999999987
No 79
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.66 E-value=2.2 Score=30.45 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+...+.++++.+ ++.+--++..++.||.-|+|++..
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 458999999999 999999999999999999998863
No 80
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=63.64 E-value=4.2 Score=28.80 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=36.2
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+..+... ..++..++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 34 iL~~l~~~--~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHRE--PGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHS--TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34444444 35899999999999999999999999999999985
No 81
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=63.55 E-value=7.1 Score=27.41 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 114 LGLLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 114 L~~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
...+...+...+.. .++..+ +..++|+.|+|.+=-+...++.|+.-|+|.+..
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34555555555433 345666 999999999999999999999999999998764
No 82
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=63.45 E-value=2.9 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999985
No 83
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=63.39 E-value=4.2 Score=33.63 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++++... ...+++.++|+.+|+.|=-+|-+++.|+..|++.+.+ +.|.
T Consensus 26 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~ 74 (265)
T 2ia2_A 26 VIRCFDHR-NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW 74 (265)
T ss_dssp HHHTCCSS-CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 34444433 3469999999999999999999999999999999974 5554
No 84
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=63.35 E-value=3.7 Score=29.75 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
++.++++.+. +.+++.++|+.|+|..=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~~--g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQ--GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHS--CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4556677665 569999999999997444444689999999999873
No 85
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=63.30 E-value=6.4 Score=28.74 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+++.++|+.+++.+--+.-+++-|+.-|+|++.
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 35999999999999999999999999999999986
No 86
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=62.98 E-value=3.2 Score=30.96 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.9
Q ss_pred CCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 129 GVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 129 ~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
+..-.++.++|+.+++...-+..+++-|+.-|+|++...
T Consensus 48 ~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 48 GVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 334479999999999999999999999999999988633
No 87
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=62.79 E-value=3.1 Score=32.57 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=35.9
Q ss_pred cCCCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 105 YAYSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 105 ~~~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+...|...+-..|....++++.+.+-..+++.++|++.||.+.-||-
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred CcccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 34445666778899999999988877789999999999998887774
No 88
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=62.63 E-value=3.8 Score=29.38 Aligned_cols=35 Identities=11% Similarity=0.386 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..++|+.+++.+--++-+++-|+.-|+|++..
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 59999999999999999999999999999998863
No 89
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=62.63 E-value=4.1 Score=29.18 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=33.3
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++..++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 346899999999999999999999999999999885
No 90
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=62.46 E-value=5.7 Score=30.60 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
.+.+.++.. +..++.++|+.|++.+=-+.--+++|+..|+|++...+...+.
T Consensus 61 ~~IL~~L~~---~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 61 RRLVQLLTS---GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHHGGG---CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 335555552 4589999999999999999999999999999987655544443
No 91
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=62.46 E-value=2.8 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|.+..-..|.+..+++|.+.+-..+++.++|++.||.+.-||
T Consensus 40 ~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY 81 (255)
T 3g1o_A 40 SGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFY 81 (255)
T ss_dssp -CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHH
Confidence 444455678889999999988788999999999999887777
No 92
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=62.30 E-value=3.7 Score=30.00 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.+..+..++ .++..++|+.+|+.+.-+...++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~~~--~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKDA--RTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 45666666543 4799999999999999999999999999999764
No 93
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=62.29 E-value=3.6 Score=31.82 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++...+.+.+++.++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 344455555667999999999999999999999999999999985
No 94
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=62.13 E-value=8.8 Score=27.75 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+...+...+.. .++..+ +..++|+.|||.|--+-..++.|+.-|+|.....
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 344455555443 356677 9999999999999999999999999999987644
No 95
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=62.08 E-value=4.3 Score=29.79 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=32.1
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++..++|+.+++.+--++-+++-|+.-|+|++..
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 358999999999999999999999999999999863
No 96
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=61.95 E-value=4.4 Score=29.58 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=33.3
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++..++|+.+++.+--++-+++-|+.-|+|++..
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 458999999999999999999999999999999863
No 97
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=61.56 E-value=5.3 Score=29.78 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
...-.+.+.++..+ ..++..++|+.+|+.+--+...++-|+.-|+|.+
T Consensus 6 d~~~~~iL~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 6 DDIDRILVRELAAD--GRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34445677777665 3589999999999999999999999999999975
No 98
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=61.53 E-value=3.6 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=31.9
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+|+.+=-+...++.|+.-|+|.+.
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4899999999999999999999999999999765
No 99
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=61.22 E-value=5 Score=29.49 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 5899999999999999999999999999999885
No 100
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=61.18 E-value=3.7 Score=29.60 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+..+...+. ++.++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 4444445443 999999999999999999999999999999863
No 101
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=60.94 E-value=3.3 Score=34.73 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=36.5
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+++.++|+++++..+.++-++++|.+.|++++...+.|.-
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~ 92 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVP 92 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 458999999999999999999999999999998865555554
No 102
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.49 E-value=7.2 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 4899999999999999999999999999999986
No 103
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.47 E-value=5.3 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
...-.+.+.++..+ ..++..++|+++|+.+--+...++-|+.-|+|.+
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 34445777877766 3589999999999999999999999999999986
No 104
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=60.44 E-value=11 Score=28.83 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=37.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+|..+.+......++.++|+++++..+-++.+++-|+.=|+|++.
T Consensus 40 ~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 40 KIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334444545566899999999999999999999999999999873
No 105
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=60.36 E-value=3.8 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=35.8
Q ss_pred HHHHHhhCCCceecHHHH----HHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 121 FLSLYNRDGVESIGLDDA----ASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~a----A~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+..+... ..++..++ |+.+++.+--++-+++-||.-|+|++...
T Consensus 13 iL~~l~~~--~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 13 VLAYLYDN--EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp HHHHHTTC--TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHc--CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 33444433 34788888 89999999999999999999999998643
No 106
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=60.29 E-value=5.4 Score=28.52 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 122 LSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 122 I~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+..+...+ .++..++|+.+++.+--++-+++-|+.-|+|.+.
T Consensus 35 L~~l~~~~--~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 35 LVRVCENP--GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCc--CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 33444443 5899999999999999999999999999999885
No 107
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.02 E-value=4.1 Score=29.13 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999986
No 108
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.02 E-value=3.7 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=31.6
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+++.++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999999853
No 109
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.89 E-value=4.3 Score=29.15 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+..+... .+.+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 44444441 235899999999999999999999999999999886
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.51 E-value=6 Score=29.82 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+++.++|+.+++.+--+.-+++-|+.-|+|+|..
T Consensus 68 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 68 DQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 49999999999999999999999999999999873
No 111
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=59.42 E-value=5.3 Score=29.17 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 122 LSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 122 I~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.++... ..++..++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 47 L~~l~~~--~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 47 MLTLWEE--NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHS--SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 3344444 45899999999999999999999999999999986
No 112
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=59.41 E-value=4.8 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.7
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++..++|+.+++.+--+.-+++-|+.-|+|++.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 357999999999999999999999999999999986
No 113
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=59.27 E-value=5.7 Score=28.68 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+++.+--+.-+++-|+.-|+|++.
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999986
No 114
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.15 E-value=4 Score=29.95 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++.|+.-|+|++.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999885
No 115
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.04 E-value=5.7 Score=29.68 Aligned_cols=49 Identities=18% Similarity=0.364 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
|...-.+.+.++..++ .++..++|+.+|+.+.-+...++-|+.-|+|.+
T Consensus 5 ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3444567788777763 599999999999999999999999999999976
No 116
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=58.27 E-value=6 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhC----CeeeEeeehhhHhhhhcceeecC
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLG----VERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~----V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++.++... +.++..++++.|+ +.+--+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~~--~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWKH--SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHTS--SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 4456666553 4689999999997 56778999999999999998864
No 117
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=58.03 E-value=3.8 Score=34.52 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=36.0
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W 172 (191)
+.+++.++|+++++..+.++-++.+|.++|++++.. +.|.-
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 569999999999999999999999999999998864 44544
No 118
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.99 E-value=6.9 Score=28.95 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 5899999999999999999999999999999986
No 119
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=57.90 E-value=12 Score=26.42 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeee-EeeehhhHhhhhcceeecCCCceEEe
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERR-RIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rR-RIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
...-.+.+.++...+ ..+..++|+.||+.+= -+=-.++.||.=|+|.+.+.+.-.|.
T Consensus 10 ~~~~~~IL~~Lk~~g--~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS--DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHHTC--CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hhHHHHHHHHHHHcC--CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 355678888888775 4789999999999763 55567788999999987765555773
No 120
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.87 E-value=3.9 Score=28.50 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCc-eecHHHHHHHhCCeeeEeeehhhHhhhh
Q 045382 117 LCSNFLSLYNRDGVE-SIGLDDAASKLGVERRRIYDIVNVLESV 159 (191)
Q Consensus 117 Lt~kFI~l~~~~~~~-~i~L~~aA~~L~V~rRRIYDIiNVLEsl 159 (191)
+..+++.++.++... .++++++|+.+|+.+|.|+-++.-.-++
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 456677777666544 7999999999999998888777655443
No 121
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.56 E-value=4 Score=29.14 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.9
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..++..++|+.+++.+--++.+++-|+.-|+|++.
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 45899999999999999999999999999999886
No 122
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=57.53 E-value=8.6 Score=28.43 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.++.++... +.++..++|+.|+|.+=-+-.+++.||.-|+|.+...
T Consensus 44 ~i~~~l~~~--~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 44 LISDLIREV--GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp HHHHHHHHH--SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHhC--CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 333444433 3478999999999999999999999999999998744
No 123
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=57.37 E-value=6 Score=29.10 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=33.1
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
..++..++|+.+++.+=-+.-+++-|+.-|+|++..
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 358999999999999999999999999999999863
No 124
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.26 E-value=4.8 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=32.7
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..++|+.+++.+--++.+++-|+.-|+|.+..
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 48999999999999999999999999999998863
No 125
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.23 E-value=5.9 Score=28.45 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=32.9
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.+++.++|+.+++.+--+.-+++-|+.-|+|++.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 45899999999999999999999999999999986
No 126
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=56.92 E-value=3.9 Score=29.88 Aligned_cols=45 Identities=7% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhh
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESV 159 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEsl 159 (191)
..+..++++++.++....++++++|+.+|+.+|.|.-++.-.-++
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~ 54 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGH 54 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 456788999998887778999999999999988887777654333
No 127
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=56.66 E-value=25 Score=25.76 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecC-CCce
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRA-KNKY 170 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~-Kn~y 170 (191)
.+...+...+.. .++..+ +..++|+.|||.+--+-..++.|+.-|+|.+.. ++.|
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 344555555443 355666 699999999999999999999999999998764 4433
No 128
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=56.27 E-value=3.4 Score=29.69 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=32.8
Q ss_pred eecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+...++++.+ ++.+--++..++.||.-|+|++..
T Consensus 35 ~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 35 TKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp CBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 48999999999 999999999999999999998864
No 129
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=56.24 E-value=3.7 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.365 Sum_probs=32.9
Q ss_pred ceecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+.+...++++.+ |+.+..++..++.||.-|+|++..
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 468999999999 599999999999999999998863
No 130
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=56.22 E-value=3.8 Score=32.25 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=32.7
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+...++.++|+.||+.+--++..++.||.-|+|.+..
T Consensus 22 g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 4568999999999999888999999999999998863
No 131
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=55.50 E-value=11 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhCC-CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 116 LLCSNFLSLYNRDG-VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~-~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+-+.+-++...+ +..+++.++|+.+++.++-+..|+..|..-|+|.-.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 33444555554443 457999999999999999999999999999999743
No 132
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=55.43 E-value=4.9 Score=34.24 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=35.5
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
+.+++.++|.++++..|.++-++..|.++|++++. .+.|.
T Consensus 49 ~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y~ 88 (363)
T 3dp7_A 49 EGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRYV 88 (363)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEEe
Confidence 57999999999999999999999999999999885 45444
No 133
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=55.01 E-value=6.4 Score=27.62 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCC-ceecHHHHHHHhCCeeeEeeehhhHhhh
Q 045382 117 LCSNFLSLYNRDGV-ESIGLDDAASKLGVERRRIYDIVNVLES 158 (191)
Q Consensus 117 Lt~kFI~l~~~~~~-~~i~L~~aA~~L~V~rRRIYDIiNVLEs 158 (191)
...+.++++.++.. ..++++++|+.+|+.+|.|.-++.-.-+
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 45677888888776 7899999999999998888777665433
No 134
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=54.92 E-value=4.8 Score=33.58 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=35.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.+++.++|.++++..|.++-++.+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 79999999999999999999999999999999875 4444
No 135
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=54.80 E-value=5.6 Score=29.81 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=32.2
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+=-++-+++-|+.-|+|++.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4899999999999999999999999999999884
No 136
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=54.76 E-value=7.5 Score=28.21 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=32.7
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..++|+.+++.+--+.-+++-|+.-|+|++..
T Consensus 61 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 61 ERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 58999999999999999999999999999999863
No 137
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=54.57 E-value=5.6 Score=28.54 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 6899999999999999999999999999999886
No 138
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.54 E-value=7.5 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+++.+--++-+++.|+.-|+|++.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999885
No 139
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=53.14 E-value=6.6 Score=31.01 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred CCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 128 DGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 128 ~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.|+..++-.++|++|||.|--+=+.+..|+.-|+|+...
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 467888999999999999999999999999999998653
No 140
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=53.11 E-value=8 Score=27.39 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=32.1
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++..++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999999885
No 141
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=51.84 E-value=6.7 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=33.3
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+.+++.++|+.+++.+=-+.-+++-||.-|+|+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 368999999999999999999999999999999863
No 142
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=51.71 E-value=6 Score=32.16 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHHHHhh---CCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 117 LCSNFLSLYNR---DGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 117 Lt~kFI~l~~~---~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+...+...+.. .|+..++..++|+.|||.|=-+-+.++.|+.-|+|+...
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34444444332 467788999999999999999999999999999998873
No 143
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=51.32 E-value=3.4 Score=30.65 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 106 AYSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 106 ~~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
...|++..-..|....+++|.+.+-..++++++|++.||.+.-||-
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 58 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYD 58 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSC
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHH
Confidence 4446666677888889999998888889999999999999888883
No 144
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=51.28 E-value=12 Score=27.88 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 128 DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 128 ~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.++..+ +..++|+.|||.|--+-..++.|+.-|+|.....
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 356667 9999999999999999999999999999987644
No 145
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=51.22 E-value=9.1 Score=27.65 Aligned_cols=38 Identities=32% Similarity=0.521 Sum_probs=33.6
Q ss_pred CCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 129 GVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 129 ~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
++..+ +..++|+.|+|.+=-+-..++.|+.-|+|++..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555 999999999999999999999999999998764
No 146
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=51.05 E-value=16 Score=27.01 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceee-cCCCceE
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTR-RAKNKYT 171 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K-~~Kn~y~ 171 (191)
.+...+.+.+.. .++..+ +..++|+.|||.|=-+-..++.|+.-|+|.. .+++.|.
T Consensus 18 QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 18 QIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 345555554433 356677 8999999999999999999999999999965 4555554
No 147
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=50.72 E-value=9 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 128 DGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 128 ~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.|+..+...++|++|||.|--+=+.+..|+.-|+|+..
T Consensus 35 ~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 35 VPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 46788999999999999999999999999999999865
No 148
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=50.42 E-value=7.8 Score=28.89 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHh--CCeeeEeeehhhHhhhhcceeecCCC
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKL--GVERRRIYDIVNVLESVGVLTRRAKN 168 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L--~V~rRRIYDIiNVLEslgLI~K~~Kn 168 (191)
...-.+.++++..+ +.++..++|..+ ++.+--+-.-+++|+.-|+|++.+..
T Consensus 12 d~~d~~IL~~L~~~--g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 12 TIWDDRILEIIHEE--GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CHHHHHHHHHHHHH--SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 34447788888664 368999999999 99888888889999999999998666
No 149
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=50.41 E-value=5.9 Score=28.67 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+++.++|+.+++.+--++-+++-|+.-|+|++.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 5899999999999999999999999999999886
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=50.07 E-value=10 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.364 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
|..+-.+.+..++.++ .++..++|+++|+...-+..-++-|+.-|+|.+
T Consensus 25 ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 4556678888887763 599999999999999999999999999999976
No 151
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=48.86 E-value=6.2 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=35.2
Q ss_pred ceecHHHHHHHhCC---eeeEeeehhhHhhhhcceeec--CCCceEE
Q 045382 131 ESIGLDDAASKLGV---ERRRIYDIVNVLESVGVLTRR--AKNKYTW 172 (191)
Q Consensus 131 ~~i~L~~aA~~L~V---~rRRIYDIiNVLEslgLI~K~--~Kn~y~W 172 (191)
+.+++.++|+++++ ..++++-++++|.++|++++. +.+.|.-
T Consensus 50 ~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 50 KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 36999999999999 588999999999999999886 3445543
No 152
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=48.62 E-value=11 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+..-..|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 12 ~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 12 IITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp SHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 3345678888999999988778999999999999998888
No 153
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=48.00 E-value=6 Score=29.97 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=33.3
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
+...+.++++.+++.+--+...++.||.-|+|+|..
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 358999999999999999999999999999999864
No 154
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=47.42 E-value=18 Score=26.71 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC-CceE
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK-NKYT 171 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K-n~y~ 171 (191)
.+...+...+.. .++..+ +..++|+.|||.|--+-..++.|+.-|+|.+... +.|.
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V 75 (126)
T 3by6_A 15 QLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFI 75 (126)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEE
Confidence 344444444433 356778 9999999999999999999999999999987644 4443
No 155
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=46.30 E-value=24 Score=25.32 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.2
Q ss_pred ecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecCC
Q 045382 133 IGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 133 i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
++..++++.+ ++.+.-+...+..||.-|+|++...
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 5599999999 9999999999999999999998743
No 156
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=45.98 E-value=20 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC-CCceEE
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA-KNKYTW 172 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~-Kn~y~W 172 (191)
..+-+.+-++...++ . ++.++|+.+++..+-+..|+.-|..-|+|+-.. .+-|..
T Consensus 9 ~yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~L 64 (145)
T 1xd7_A 9 AVAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASL 64 (145)
T ss_dssp HHHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEE
T ss_pred HHHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCcee
Confidence 344444555544444 3 999999999999999999999999999997543 333433
No 157
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.63 E-value=13 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.5
Q ss_pred ecHHHHHHHhCCeeeEeeehhhHhhh
Q 045382 133 IGLDDAASKLGVERRRIYDIVNVLES 158 (191)
Q Consensus 133 i~L~~aA~~L~V~rRRIYDIiNVLEs 158 (191)
++..++|..||+.+.-+|.+++-++.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 68999999999998888887765543
No 158
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=44.35 E-value=6.9 Score=29.26 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=40.5
Q ss_pred CCchHHHHHHH----HHHHhhCCCceecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecC
Q 045382 111 QKSLGLLCSNF----LSLYNRDGVESIGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 111 eKSL~~Lt~kF----I~l~~~~~~~~i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
...|..+..+. +..+. .+.+...++++.+ ++.+.-+...++.||.-|+|++..
T Consensus 26 ~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 26 REVLKHVTSRWGVLILVALR---DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHHSHHHHHHHHHGG---GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCcHHHHHHHHH---cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 34456665443 23333 3468999999999 799999999999999999999863
No 159
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=44.31 E-value=12 Score=27.01 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+++..-..|....++++.+.+-..+++.++|++.||.+.-||
T Consensus 6 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 6 SKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 344455678899999999988788999999999999988888
No 160
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=43.96 E-value=9.4 Score=26.94 Aligned_cols=51 Identities=8% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhC----CeeeEeeehhhHhhhhcceeecCC-CceEE
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLG----VERRRIYDIVNVLESVGVLTRRAK-NKYTW 172 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~----V~rRRIYDIiNVLEslgLI~K~~K-n~y~W 172 (191)
..+.++... ..++..++|+.++ +.+=-+|-+++.|+.-|+|++... ..+.+
T Consensus 14 ~vL~~l~~~--~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~ 69 (123)
T 1okr_A 14 EVMNIIWMK--KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQY 69 (123)
T ss_dssp HHHHHHHHH--SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEE
T ss_pred HHHHHHHhC--CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEE
Confidence 344555443 3589999999999 669999999999999999988642 34444
No 161
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.93 E-value=9.8 Score=26.24 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.9
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
+..+++.++|+.+++.+=-++-+++.||.-|+|..
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 34599999999999999999999999999999943
No 162
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=43.86 E-value=5.2 Score=28.85 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|+++.-..|....++++.+.+-..+++.++|++.||.|.-||
T Consensus 9 r~~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 9 QIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 344455678888999999988788999999999999888777
No 163
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=43.15 E-value=11 Score=27.29 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|.+..++++.+.+-..+++.++|++.||.+.-||-
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 4455567888999999988877789999999999998887773
No 164
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=42.94 E-value=14 Score=32.20 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++++.+. .+.++|+++++..++. .-||+..|+.+|++...
T Consensus 198 il~~L~~~-~~~isi~~is~~T~i~---~~Dii~tL~~l~~l~~~ 238 (278)
T 2pq8_A 198 LLENLRDF-RGTLSIKDLSQMTSIT---QNDIISTLQSLNMVKYW 238 (278)
T ss_dssp HHHHTC--------CHHHHHHHCBC---HHHHHHHHHHTTCEEC-
T ss_pred HHHHHHHc-CCCccHHHHHHHhCCC---HHHHHHHHHHCCCEEEe
Confidence 33444443 3589999999999994 68999999999999764
No 165
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=42.78 E-value=10 Score=27.93 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=35.4
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 108 SRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 108 ~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.+++..-..|....+++|.+.+-..+++.++|++.||.|.-||
T Consensus 27 ~~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 27 RTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 3445566788899999999988778999999999999988888
No 166
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=42.68 E-value=9.4 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.4
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.++..++|+.+++.+=-+.-+++-|+.-|+|++.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 45999999999999999999999999999999973
No 167
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.23 E-value=13 Score=26.75 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+..-..|....++++.+.+-..+++.++|++.||.+.-||-
T Consensus 5 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 5 GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 34446788888999988887889999999999998887773
No 168
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=41.96 E-value=14 Score=27.18 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=33.9
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..=..|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 5 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 45 (195)
T 2dg7_A 5 DPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYF 45 (195)
T ss_dssp CTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHH
Confidence 34445678888899998888788999999999999887777
No 169
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=41.89 E-value=25 Score=25.32 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+++..-..|....+++|.+.+-..++++++|++.||.+.-||-
T Consensus 9 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 51 (199)
T 3on2_A 9 HHGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSK 51 (199)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHH
Confidence 3444556788888999988877789999999999999998884
No 170
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=40.85 E-value=21 Score=31.26 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.++++.......++|+++++..++. .-||+..|+.+|++.-
T Consensus 203 il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 203 ILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp HHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred HHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 4445555556789999999999985 4799999999999964
No 171
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=40.05 E-value=11 Score=32.76 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 124 LYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 124 l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+..+++..+++.++|+++++.+=.+==+++-||.-|+|+|.
T Consensus 412 ~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 412 HILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 344444467999999999999999999999999999999885
No 172
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=39.76 E-value=20 Score=27.99 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhC-CCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 116 LLCSNFLSLYNRD-GVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 116 ~Lt~kFI~l~~~~-~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..+-+.+-++... ++..+++.++|+.+++..+-+..|+..|..-|+|.-.
T Consensus 27 ~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 27 RYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 4444445554433 3457999999999999999999999999999999643
No 173
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=39.75 E-value=13 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhh
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVN 154 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiN 154 (191)
.+..++++++.++....++++++|+.+++.++.|..++-
T Consensus 169 ~~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 169 DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp CHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457889999998888899999999999999998888774
No 174
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=39.17 E-value=15 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 128 DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 128 ~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
.|+..+ +-.++|++|||.|-=+=+.+..|+..|+|+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 367778 6889999999999999999999999999987
No 175
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=39.17 E-value=25 Score=28.52 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeec-CCCceE
Q 045382 115 GLLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRR-AKNKYT 171 (191)
Q Consensus 115 ~~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~-~Kn~y~ 171 (191)
..+...+.+.+.+ .++..+ +..++|+++||.|==+-..++.|+.-|+|.+. +++.|.
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 73 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYV 73 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEE
Confidence 3455666666654 356677 89999999999998889999999999999874 455443
No 176
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=39.15 E-value=22 Score=25.97 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCC
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKN 168 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn 168 (191)
+..+...+.+++..+ +.+++.++-+.+|+.|+..-=|..-|..+|+..|.+-.
T Consensus 64 ~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~ 116 (121)
T 2pjp_A 64 IVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGND 116 (121)
T ss_dssp HHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTE
T ss_pred HHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCE
Confidence 455566666777666 45999999999999999999999999999999887543
No 177
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=38.98 E-value=32 Score=27.92 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeec-CCCceE
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRR-AKNKYT 171 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~-~Kn~y~ 171 (191)
.+...+.+.+.. .++..+ +..++|++|||.|=-+-..++.|+.-|+|.+. +++.|.
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 74 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFV 74 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCeEEE
Confidence 444555555543 355667 89999999999988888999999999999874 455544
No 178
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=38.73 E-value=51 Score=28.76 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=36.8
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKG 174 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G 174 (191)
.++++.+. ...++|+++++..++.. -||+..|+.+|++.......+.-+.
T Consensus 198 i~~~L~~~-~~~isi~~is~~Tgi~~---~Dii~tL~~l~~l~~~kg~~~i~~~ 247 (276)
T 3to7_A 198 LITLLVEH-QKEITIDEISSMTSMTT---TDILHTAKTLNILRYYKGQHIIFLN 247 (276)
T ss_dssp HHHHHHHT-CSEEEHHHHHHHHCBCH---HHHHHHHHHTTCEEEETTEEEEECC
T ss_pred HHHHHHhc-CCceeHHHHHHHhCCCH---HHHHHHHHHCCCEEEeCCcEEEEEC
Confidence 34444444 45899999999999964 7999999999999776444444443
No 179
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=38.72 E-value=9 Score=32.26 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred ceecHHHHHHHhCC---eeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGV---ERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V---~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.+++.++|+++++ ..++++-++.+|.++|++++.
T Consensus 44 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 44 KPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 36999999999999 588999999999999999876
No 180
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=38.36 E-value=29 Score=27.31 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=37.6
Q ss_pred CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeec-CCCceE
Q 045382 128 DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRR-AKNKYT 171 (191)
Q Consensus 128 ~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~-~Kn~y~ 171 (191)
.|+..+ +-.++|++|||.|=-+=+.++.|+.-|+|++. +++.|.
T Consensus 26 ~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G~~V 71 (239)
T 1hw1_A 26 PPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 71 (239)
T ss_dssp CTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCCcEe
Confidence 367788 89999999999999999999999999999865 445554
No 181
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.29 E-value=16 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=34.0
Q ss_pred CceecHHHHHHHh-CCeeeEeeehhhHhhhhcceeecC
Q 045382 130 VESIGLDDAASKL-GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 130 ~~~i~L~~aA~~L-~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.+...+.++++.+ ++.++-|...+..||.-|+|+|..
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 3568999999999 999999999999999999999874
No 182
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.12 E-value=21 Score=26.31 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++++.+. ...++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEE
Confidence 55666654 3469999999999 788899999999999999998864
No 183
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=38.06 E-value=11 Score=27.14 Aligned_cols=42 Identities=10% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|++..-..|....++++.+.+-..++++++|++.||.+.-||
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 7 KDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 445556778888999998887778999999999999887777
No 184
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.03 E-value=8.8 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.7
Q ss_pred CceecHHHHHHHhCCeeeEeeehhh
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVN 154 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiN 154 (191)
+..+++.++|+.|||.+.|+|+.++
T Consensus 29 ~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CceEcHHHHHHHhCCCHHHHHHHHH
Confidence 3689999999999999999999875
No 185
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=38.02 E-value=16 Score=30.28 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 124 LYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 124 l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+..+++..++..++|+.+++.+=.+--+++-||.-|+|+|.
T Consensus 166 ~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 166 IITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 333444346999999999999999999999999999999985
No 186
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=37.96 E-value=16 Score=26.91 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=36.6
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 107 YSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 107 ~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..|++..-..|.+..+++|.+.+-..++++++|++.||.+.-||
T Consensus 12 ~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 55 (207)
T 2rae_A 12 GRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLF 55 (207)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHH
T ss_pred ccchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHh
Confidence 34556667788899999998887778999999999999877776
No 187
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=37.72 E-value=15 Score=26.68 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|++..=..|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 345556788889999998887778999999999999998888
No 188
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.61 E-value=16 Score=27.74 Aligned_cols=46 Identities=24% Similarity=0.458 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 117 LCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 117 Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
+=++.+..++.+ ..++..++|+++|+..--+..-++-|+.-|+|.+
T Consensus 4 ~d~~il~~L~~~--~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED--STLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC--SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 345677777765 4589999999999999889999999999999985
No 189
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.58 E-value=20 Score=26.57 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=36.9
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++++.+.++..++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5566665542568999999998 778888999999999999998864
No 190
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=37.57 E-value=14 Score=26.88 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|++..-..|....+++|.+.+-..++++++|++.||.|.-||
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhh
Confidence 445566788888999998887778999999999999988887
No 191
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=37.50 E-value=10 Score=29.19 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|....+++|.+.+-..+++.++|++.||.+.-||-
T Consensus 41 ~~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 41 SGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 3444556788889999999887889999999999998877773
No 192
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=37.45 E-value=9 Score=25.30 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=34.8
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcce---eecCCCceEEecccchHHHHHH
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVL---TRRAKNKYTWKGFKAIRGALQE 184 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI---~K~~Kn~y~W~G~~~I~~tLek 184 (191)
...+++.++|+.||+.+.-||..++- |-+ -|.++.. .|. .+.|..-|++
T Consensus 8 ~~~l~~~eva~~lgvsrstiy~~~~~----g~fP~piklG~~~-~w~-~~ev~~Wl~~ 59 (66)
T 1z4h_A 8 DSLVDLKFIMADTGFGKTFIYDRIKS----GDLPKAKVIHGRA-RWL-YRDHCEFKNK 59 (66)
T ss_dssp SSEECHHHHHHHHSSCHHHHHHHHHH----HHCCCSEESSSCE-EEE-HHHHHHHHHH
T ss_pred ccccCHHHHHHHHCcCHHHHHHHHHC----CCCCCCEEeCCCe-EEe-HHHHHHHHHH
Confidence 46899999999999999999998873 333 3455555 586 3445554443
No 193
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.19 E-value=18 Score=28.80 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 107 YSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 107 ~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..|...+-..|...-++++.+.+-..+++.++|+++||.+--||
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 34556677889999999999888788999999999999988888
No 194
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=36.98 E-value=10 Score=27.27 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.-..|....+++|.+.+-..+++.++|++.||.|.-||
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 9 LAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 34567888899999988788999999999999998888
No 195
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=36.77 E-value=19 Score=26.35 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=36.2
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 108 SRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 108 ~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.+++..-..|....+++|.+.+-..++++++|++.||.+.-||
T Consensus 12 ~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (213)
T 2qtq_A 12 LETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVK 54 (213)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHh
Confidence 3455666788899999998888778999999999999887777
No 196
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=36.65 E-value=21 Score=31.18 Aligned_cols=31 Identities=10% Similarity=0.293 Sum_probs=27.8
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++|+++++..++. .-||+..|+.+|++...
T Consensus 212 ~isi~~is~~T~i~---~~Dii~tL~~l~~l~~~ 242 (280)
T 2ou2_A 212 QITINEISEITSIK---KEDVISTLQYLNLINYY 242 (280)
T ss_dssp CCBHHHHHHHHCBC---HHHHHHHHHHTTCCCBC
T ss_pred ceeHHHHHHHhCCC---HHHHHHHHHHCCcEEEE
Confidence 79999999999995 57999999999999654
No 197
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=35.95 E-value=23 Score=26.74 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=34.0
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++..++|..+|+.+.-+.-+++-|+.-|+|+..+ +.+.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~-~~i~ 216 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG-REIS 216 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESS-SCEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecC-CEEE
Confidence 46789999999999999999999999999998874 4443
No 198
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=35.84 E-value=18 Score=30.84 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhccee
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLT 163 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~ 163 (191)
.+.++++.+ +..++..++|++|+|.++-|+--++.|+..|++.
T Consensus 8 ~~Il~~L~~--~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLAN--GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTT--SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHc--CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 445666653 4579999999999999999999999999999884
No 199
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=35.60 E-value=36 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 128 DGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 128 ~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.|+..++-.++|++|||.|-=+=+.+..|+.-|+|+....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4677889999999999999999999999999999987643
No 200
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.22 E-value=15 Score=28.94 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=32.7
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..++|+.+++.+=-+.-+++-|+.-|+|.+..
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 48999999999999999999999999999999863
No 201
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=35.08 E-value=11 Score=31.92 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=31.3
Q ss_pred ecHHHHHHHhCC------eeeEeeehhhHhhhhcceeec
Q 045382 133 IGLDDAASKLGV------ERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 133 i~L~~aA~~L~V------~rRRIYDIiNVLEslgLI~K~ 165 (191)
+++.++|+++++ ..+.++-++.+|.++|++++.
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 899999999999 789999999999999999876
No 202
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=34.76 E-value=16 Score=26.17 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+++..-..|.+..+++|.+.+-..++++++|++.||.+.-||
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 48 (191)
T 3on4_A 7 NISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIH 48 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhh
Confidence 445566778888999998887778999999999999888777
No 203
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=34.39 E-value=23 Score=26.05 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..|....+++|.+.+-..++++++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 5677888999998887889999999999998887773
No 204
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=34.08 E-value=20 Score=30.66 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhCC--eee---EeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGV--ERR---RIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V--~rR---RIYDIiNVLEslgLI~K~ 165 (191)
....+.+.++..+++.++|.++++ ..+ .++-++.+|.++|+++..
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 344455544457999999999998 667 899999999999999875
No 205
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=33.64 E-value=26 Score=24.42 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=35.8
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec--CCCceEEecccchHH
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR--AKNKYTWKGFKAIRG 180 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~--~Kn~y~W~G~~~I~~ 180 (191)
..++.++|+.+|+.+=-++--+++|+.. +|.+. ++..|.......+..
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~ 90 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEG 90 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHH
Confidence 4899999999999999999999999999 99744 333333334344333
No 206
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=33.37 E-value=22 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=35.6
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
.++..++|..+|+.|.-+.=+++-|+.-|+|++.+ +.+.-.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i~ 217 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIVY 217 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEEe
Confidence 46899999999999999999999999999999874 445544
No 207
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.12 E-value=35 Score=24.91 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 112 KSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 112 KSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+.|..-=...++++.++.+.-|+..+++.++++..+-+-=|+-.||.-++|.+.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 344443344556667777777999999999999999999999999999999886
No 208
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=33.12 E-value=27 Score=25.65 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHhC----CeeeEeeehhhHhhhhcceeecC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLG----VERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~----V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++.++... ...++..++++.++ +.+=-+|-+++-|+.-|+|.+..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 445555543 23599999999998 67888999999999999998864
No 209
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=33.06 E-value=14 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 107 YSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 107 ~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..|++..-..|....+++|.+.+-..++++++|++.||.+.-||
T Consensus 25 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y 68 (230)
T 2iai_A 25 AKRDTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIY 68 (230)
T ss_dssp CC----CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHH
Confidence 33455555678888899998887778999999999999887777
No 210
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=33.03 E-value=34 Score=27.03 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=35.9
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 108 SRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 108 ~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
.++..+-..|...-++++.+.+-..+++.++|+++||.+--||-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 34556778899999999999888889999999999999888884
No 211
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.95 E-value=28 Score=26.03 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
..++..++|..+|+.+.-+.-+++-|+.-|+|+.. ++.+.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 201 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTVE 201 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 45789999999999999999999999999999876 44443
No 212
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=32.77 E-value=20 Score=26.34 Aligned_cols=42 Identities=12% Similarity=0.369 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
++..-..|.+..+++|.+.+-..+++.++|++.||.+.-||-
T Consensus 11 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 344556788889999999887889999999999999888884
No 213
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=32.74 E-value=34 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=33.6
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKN 168 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn 168 (191)
.++..++|..+|+.|.-+.=+++-|+.-|+|+..++.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 3789999999999999999999999999999987544
No 214
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=32.38 E-value=29 Score=28.70 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 122 LSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 122 I~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
+..+..++...++..++|+.+++.+--+--+++=||.-|+|.|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 33444443457999999999999999999999999999999885
No 215
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=32.29 E-value=33 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+++..-..|.+.-+++|.+.+-..++++++|+..||.|.-||-
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 11 DYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hhhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 3344456788888889998887889999999999999988883
No 216
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=32.16 E-value=23 Score=30.12 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=32.9
Q ss_pred CceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 130 VESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 130 ~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.+++.++|.++++..+.++-++.+|.++|++++.
T Consensus 41 ~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 41 PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 357999999999999999999999999999999764
No 217
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=31.64 E-value=26 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 129 GVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 129 ~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+..+...++|+.|++.+--+-.+++-|+.-|+|++...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 356799999999999999999999999999999999854
No 218
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=31.44 E-value=14 Score=27.29 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+...+...+.. .++..+ +..++|+.|||.|--+-..++.|+.-|+|.....
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 15 QIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp HHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 445555555533 356677 8999999999999999999999999999987643
No 219
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=31.22 E-value=18 Score=26.80 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.-..|....++++.+.+-..++++++|++.||.|.-||
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 13 KRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 44678888999999888788999999999999888777
No 220
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.06 E-value=16 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=19.2
Q ss_pred ecHHHHHHHhCCeeeEeeehhh
Q 045382 133 IGLDDAASKLGVERRRIYDIVN 154 (191)
Q Consensus 133 i~L~~aA~~L~V~rRRIYDIiN 154 (191)
.++.++|..|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999988887654
No 221
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=30.99 E-value=19 Score=26.45 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+..-..|....+++|.+.+-..++++++|++.||.|.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 8 PQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHH
T ss_pred hhHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhh
Confidence 3445678888999998888778999999999999888887
No 222
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=30.48 E-value=28 Score=23.57 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=23.9
Q ss_pred CCCCCCCCccCCccchhccccccCCCccceecccCcc
Q 045382 20 SDRYQPWPMELPETETKFGLGWRGDDRRRTIFRSVPT 56 (191)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 56 (191)
|.+-+|.|.............-.++..++.+|..||.
T Consensus 1 G~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~V~nlp~ 37 (101)
T 2la4_A 1 GSQTIGLPPQVNPQAVDHIIRSAPPRVTTAYIGNIPH 37 (101)
T ss_dssp CCCCCCCCSSSCHHHHHHHHTTSCSSCCEEEEESCCT
T ss_pred CCCCCCCCCCCChhhhhhhhhcCCCCCCEEEEcCCCc
Confidence 3455666666666655555555666678888888764
No 223
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=30.47 E-value=23 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..-..|.+..+++|.+.+-..++++++|++.||.+.=||
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y 68 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFY 68 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhh
Confidence 45556788889999999988788999999999999877776
No 224
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.21 E-value=28 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.+.++. . +.++..++|+.+|+.+--++-.++.|+.-|+|.+.
T Consensus 23 ~~IL~~L~-~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR-N--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT-T--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34566665 3 35999999999999999999999999999999876
No 225
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=29.56 E-value=24 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..|....+++|.+.+-..++++++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 7 VRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 4577778889988877789999999999999888874
No 226
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.48 E-value=25 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.+-++.+..+.. ...++.+++..+++....+-+++..|...|.+.+...+.|.
T Consensus 7 ~l~~~i~~~~~~---~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~ 59 (121)
T 2pjp_A 7 AIWQKAEPLFGD---EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYY 59 (121)
T ss_dssp HHHHHHGGGCSS---SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceE
Confidence 345566666644 34689999999999999999999999999999999777443
No 227
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=29.40 E-value=24 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 112 KSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 112 KSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..-..|....+++|.+.+-..+++.++|+..||.+.-||
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y 55 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVF 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHH
Confidence 344567788889999888888999999999999887777
No 228
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=29.30 E-value=11 Score=28.35 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=34.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++..++|..+|+.|.-+.=+++-|+.-|+|+.. ++.+.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5788999999999999999999999999999876 44454
No 229
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=29.26 E-value=41 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 128 DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 128 ~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++..+ +-.++|++++|.|=-+-..++.|+.-|+|.+.+++.|.
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt~V 75 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTVV 75 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 345566 99999999999998888899999999999986666554
No 230
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.94 E-value=28 Score=27.75 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|...+-..|...-++++...+-..+++.++|+++||.+.-||=
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred CcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHH
Confidence 4455778899999999988887789999999999999888884
No 231
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.72 E-value=12 Score=27.30 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..-..|....+++|.+.+-..++++++|++.||.|.-||
T Consensus 10 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 50 (202)
T 3lwj_A 10 NKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFY 50 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHH
Confidence 34455677888889998887778999999999999887777
No 232
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.66 E-value=23 Score=25.54 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|...-+++|.+.+-..+++.++|++.||.+.-||-
T Consensus 7 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 7 SYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp ---CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred hhHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 4455667788888889888877789999999999998877773
No 233
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=28.32 E-value=12 Score=28.31 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCCCCCchHHHHHHHHHH-HhhCCCceecHHHHHHHhCCeeeEee
Q 045382 107 YSRKQKSLGLLCSNFLSL-YNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 107 ~~RkeKSL~~Lt~kFI~l-~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..|+.+.-..|...++++ +.+.+-..++++++|++-||.|.-||
T Consensus 14 ~~r~~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y 58 (185)
T 3o60_A 14 DLRTQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFY 58 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHH
Confidence 345556667888899999 58888788999999999999887777
No 234
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=28.13 E-value=15 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=34.3
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|.+..-..|....+++|.+.+-..+++.++|++.||.+.-||
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 52 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFY 52 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHH
Confidence 444556778888888998887778999999999999887777
No 235
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=28.12 E-value=16 Score=29.37 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhh
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLES 158 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEs 158 (191)
.+..+++.++.++....++|.++|+.+++.+|.|.-++.-.-+
T Consensus 3 ~~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g 45 (292)
T 1d5y_A 3 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567888899888888899999999999988877766654433
No 236
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=27.99 E-value=41 Score=27.69 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
-..+.++....+.+.+-..-++.+++..+++....+-++++.|...|.+.+...+.|.
T Consensus 139 ~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~ 196 (258)
T 1lva_A 139 QKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 196 (258)
T ss_dssp HHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 3567778888887665445689999999999999899999999999999999887554
No 237
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.52 E-value=33 Score=29.94 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKN 168 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn 168 (191)
.+.++.++..+++.++-+.-.++-|+..|++++.+++
T Consensus 311 ~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g 347 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG 347 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 5789999999999999999999999999999887543
No 238
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=27.07 E-value=16 Score=26.50 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+..-..|....+++|.+.+-..++++++|++.||.+.-||-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 44566788888899988877789999999999998887773
No 239
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.04 E-value=22 Score=26.54 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=33.8
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 107 YSRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 107 ~~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
..|++..-..|....+++|.+.+ ..++++++|++.||.+.-||
T Consensus 15 ~~~~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 15 RESGRQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp -----CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHH
Confidence 34555566788888999998888 89999999999999888888
No 240
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=27.00 E-value=15 Score=25.32 Aligned_cols=24 Identities=4% Similarity=0.299 Sum_probs=22.1
Q ss_pred ceecHHHHHHHhCCeeeEeeehhh
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVN 154 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiN 154 (191)
..++++++|+-||+.+..+|.+++
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999999999874
No 241
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=26.57 E-value=18 Score=27.76 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.-..|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 14 ~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y 51 (231)
T 2qib_A 14 RRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 44567788899999888788999999999999988888
No 242
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=26.21 E-value=27 Score=25.84 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=29.0
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
..++..++|+.+++.+=-+--+++-||.-|+|.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 56899999999999999999999999999999543
No 243
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=26.19 E-value=20 Score=25.91 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCe----eeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVE----RRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~----rRRIYDIiNVLEslgLI~K~~ 166 (191)
++..+.+. +.++..++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 40 VL~~L~~~--~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWSL--GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHhC--CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34444443 258999999999864 557999999999999999864
No 244
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=26.18 E-value=28 Score=25.66 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=34.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+++..-..|....+++|.+.+-..+++.++|++.||.+.-||
T Consensus 8 ~~~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y 49 (216)
T 3f0c_A 8 NEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLY 49 (216)
T ss_dssp --CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHH
Confidence 445556778888899998887778999999999999887777
No 245
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.01 E-value=30 Score=25.77 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=35.0
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
.++..++|+.+|+.+.-+.=+++-|+.-|+|+..+ +.+.-.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~i~ 179 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVYLL 179 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC-CEEEEe
Confidence 47889999999999999999999999999998874 445433
No 246
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=25.95 E-value=15 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.5
Q ss_pred ecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 133 IGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 133 i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
....++|+.+++.+--+..+++-|+.-|+|++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34599999999999999999999999999999754
No 247
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=25.91 E-value=35 Score=25.48 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=35.0
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEe
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWK 173 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~ 173 (191)
.++..++|+.+|+.+..+.-+++-|+.-|+|+.. ++.+.-.
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~ 186 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQLL 186 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEES
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEEe
Confidence 4688999999999999999999999999999976 4555443
No 248
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.81 E-value=46 Score=25.25 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=34.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++..++|..+|+.+..+.=+++-|+.-|+|+..+ +.+.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSP-RSVT 213 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SCEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC-CEEE
Confidence 46899999999999999999999999999999874 4444
No 249
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.78 E-value=24 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 112 KSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 112 KSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..-..|....+++|.+.+-..++++++|++.||.+.-||-
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 3445788888899988877789999999999998888773
No 250
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.68 E-value=26 Score=25.28 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..|.+..++++.+.+-..++++++|++.||.|.-||-
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 5 DKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 3467778888888777789999999999998877773
No 251
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.13 E-value=48 Score=24.77 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecCC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.++++.+. +..++.+++.+.| ++.+==+|-.++.|+..|+|.+..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 55566554 3468999999999 7888899999999999999988643
No 252
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.85 E-value=22 Score=25.41 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
-..|....++++.+.+-..++++++|++.||.+.-||
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (194)
T 2g7s_A 10 ADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIH 46 (194)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHH
Confidence 3567778888888887778999999999999877776
No 253
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=24.82 E-value=16 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|++..-..|....+++|.+.+-..++++++|++.||.+.-||
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y 81 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVY 81 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHH
Confidence 333455678888999998888778999999999999887777
No 254
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.77 E-value=44 Score=24.92 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=36.8
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++++.+.+ ..++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 556666654 478999999988 577888999999999999998863
No 255
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=24.76 E-value=33 Score=27.28 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=35.9
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|...+-..|....++++...+-..+++..+|+++||.+--||-
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~ 45 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYA 45 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHH
Confidence 3445667888999999988877789999999999998888874
No 256
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.67 E-value=13 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 114 LGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 114 L~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
-..|....++++.+.+-..++++++|++.||.+.-||-
T Consensus 9 r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 9 RERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 35677778888888877789999999999998877773
No 257
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=24.39 E-value=27 Score=27.05 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=33.9
Q ss_pred eecHHHHHHHhCCeee-EeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERR-RIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rR-RIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++-.++|..+|+.|| -+.=+++-|+.-|+|++.+ +.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~-~~i~ 208 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-SCFY 208 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 4778999999999998 9999999999999999874 3443
No 258
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.23 E-value=17 Score=26.54 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+..-..|....++++.+.+-..+++.++|++.||.+.-||-
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehh
Confidence 33456677888899988877789999999999998877773
No 259
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.22 E-value=34 Score=25.92 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=36.2
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++++.+.++..++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4555654432468999999988 677888999999999999998863
No 260
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.22 E-value=36 Score=24.85 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCCCchHHHHHHHHHHH-hhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLY-NRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~-~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|....++++ .+.+-..++++++|++.||.+.-||-
T Consensus 21 ~~~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 64 (212)
T 3nxc_A 21 AKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR 64 (212)
T ss_dssp --CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHH
Confidence 45556677888888854 66666789999999999998877773
No 261
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.21 E-value=23 Score=24.26 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceEEecccchHHHHHHHHHHhc
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYTWKGFKAIRGALQELKVLLR 190 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~W~G~~~I~~tLekLk~Ei~ 190 (191)
...|.++... .-.++.++|..+||.+.-||-++.-+..-|.-.-.... ........|++|+.|++
T Consensus 12 ~~~v~~~~~~--~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~~~~~~~~-----~~~~~~~ei~~L~~e~~ 76 (97)
T 2jn6_A 12 RDAVALYENS--DGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPS-----AAVSEAEQIRQLKKENA 76 (97)
T ss_dssp HHHHHHHTTG--GGSCHHHHHHHHTSCHHHHHHHHHHHCCCSTTCSCCCC-----HHHHTHHHHHHHHHCGG
T ss_pred HHHHHHHHHc--CCChHHHHHHHHCcCHHHHHHHHHHHhhcCcccCCCCC-----CCCChHHHHHHHHHHHH
Confidence 3455555332 13689999999999999999999888765542111110 01223455677777764
No 262
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.20 E-value=31 Score=25.75 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCC-----eeeEeeehhhHhhhhc
Q 045382 119 SNFLSLYNRDGVESIGLDDAASKLGV-----ERRRIYDIVNVLESVG 160 (191)
Q Consensus 119 ~kFI~l~~~~~~~~i~L~~aA~~L~V-----~rRRIYDIiNVLEslg 160 (191)
+..+..|++.....=.+..+|.+|+- .+.||||.++.++..-
T Consensus 42 R~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 42 RVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp HHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 34667788776555677889999974 4899999999998653
No 263
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.10 E-value=26 Score=25.69 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+++..-..|....+++|.+.+-..++++++|++.||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (216)
T 3s5r_A 7 TDKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHY 49 (216)
T ss_dssp --CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHH
Confidence 3445557788889999988877789999999999998888874
No 264
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=23.98 E-value=64 Score=26.74 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeec-CCCce
Q 045382 115 GLLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRR-AKNKY 170 (191)
Q Consensus 115 ~~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~-~Kn~y 170 (191)
..+...+.+.+.+ .++..+ +..++|+++||.|=-+-..++.|+.-|+|.+. +++.|
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 92 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTY 92 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EE
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceEE
Confidence 3455556665543 345667 99999999999999999999999999999764 34443
No 265
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=23.91 E-value=41 Score=25.93 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHhhC-CCceecHHHHHHHhCCeeeEeee
Q 045382 112 KSLGLLCSNFLSLYNRD-GVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 112 KSL~~Lt~kFI~l~~~~-~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
.+-..|....++++.+. +-..+++.++|++.||.+.-||=
T Consensus 5 ~tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~ 45 (220)
T 1z0x_A 5 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYW 45 (220)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHH
Confidence 34467888889999988 77789999999999998877773
No 266
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.88 E-value=34 Score=28.31 Aligned_cols=41 Identities=7% Similarity=0.181 Sum_probs=37.1
Q ss_pred ceecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 131 ESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 131 ~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
+..+..++|+.+++..+-+-..++-|...|+|++...+.+.
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~ 217 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVV 217 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEE
Confidence 56899999999999999999999999999999988666654
No 267
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=23.67 E-value=47 Score=26.17 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHHHhhCCCceecHHHHHHHhC-CeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLG-VERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~-V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++..++....++.+++..++ +.+=-||--++.|+..|+|++.
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 44555566777789999999999 9999999999999999999864
No 268
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.56 E-value=35 Score=23.97 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCC----eeeEeeehhhHhhhhcceeecC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLGV----ERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~V----~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..+...+ .++..++++.++. .+--++-+++-||.-|+|++..
T Consensus 14 ~vL~~L~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDKK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHSS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 4555555543 4899999999974 6778999999999999998864
No 269
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=23.54 E-value=28 Score=25.87 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++..++|..+|+.+..+.=+++-|+.-|+|+..+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 47889999999999999999999999999998774
No 270
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=23.38 E-value=38 Score=25.01 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+..-..|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y 48 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFY 48 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHH
Confidence 3344567788888888887778999999999999877776
No 271
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=23.33 E-value=22 Score=27.17 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|....+++|.+.+-..+++.++|++.||.|.-||-
T Consensus 36 ~~~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~ 78 (214)
T 2guh_A 36 TAEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIK 78 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHH
Confidence 3444556788889999999887889999999999998887774
No 272
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=23.26 E-value=22 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.=..|....+++|.+.+-..++++++|++.||.|.-||
T Consensus 13 ~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY 50 (192)
T 2fq4_A 13 TQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIY 50 (192)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 34567778888888887778999999999999888887
No 273
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=23.22 E-value=32 Score=26.39 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..=..|....++++.+.+-..+++.++|+..||.+.-||
T Consensus 5 ~~~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y 45 (213)
T 3ni7_A 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIR 45 (213)
T ss_dssp -CHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHH
Confidence 34444677788899999888788999999999999888777
No 274
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=22.86 E-value=22 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHHHh-hCCCceecHHHHHHHhCCeeeEeee
Q 045382 111 QKSLGLLCSNFLSLYN-RDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~-~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
+..-..|....+++|. ..+-..+++.++|++.||.|.-||-
T Consensus 10 ~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~ 51 (220)
T 3lsj_A 10 QQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYR 51 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTT
T ss_pred HhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHH
Confidence 3445677888899999 8877889999999999999888884
No 275
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=22.83 E-value=89 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=32.8
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.++..++|..+|+.|.-+.-+++-|+.-|+|+..++
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~ 252 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 252 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCC
Confidence 467899999999999999999999999999998743
No 276
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.77 E-value=28 Score=25.15 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 113 SLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 113 SL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
.-..|....++++.+.+-..+++.++|++.||.+.-||-
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 335677888899988877789999999999998887773
No 277
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.76 E-value=53 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.6
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeecC
Q 045382 121 FLSLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++++.+.+ ..++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 32 IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 555665553 368999999988 678889999999999999998853
No 278
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.75 E-value=15 Score=26.71 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 108 SRKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 108 ~RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
.|++..-..|....+++|.+.+-..++++++|++.||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 10 DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHH
Confidence 34555567788888888888776679999999999998888874
No 279
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=22.54 E-value=22 Score=26.01 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|.+..-..|....+++|.+.+-..++++++|+..||.+.-||-
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHH
Confidence 3344556788888999988877789999999999999888874
No 280
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=22.49 E-value=50 Score=20.51 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHhhCCCceecHHHHHHHh-----CCeeeEeeehhhHhhhhcceeec
Q 045382 123 SLYNRDGVESIGLDDAASKL-----GVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 123 ~l~~~~~~~~i~L~~aA~~L-----~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.++... ..++..++++.| +|..+-||-.++ .+|++ |.
T Consensus 12 ~ll~~~--~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITSN--EIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHS--CCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHcC--CCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 344443 468999999999 999999996666 66777 54
No 281
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.45 E-value=20 Score=27.83 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
|++..-..|....+++|.+.+-..++++++|+..||.|.-||-
T Consensus 43 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 43 KREQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHH
Confidence 3344556778888999988877789999999999999888883
No 282
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.32 E-value=34 Score=26.33 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
...+-..|...-++++.+.+ .+++.++|+++||.+--||=
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G--~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHhHHHH
Confidence 34566788888999998776 89999999999998888774
No 283
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=22.26 E-value=33 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+++..-..|....+++|.+. ..++++++|++.||.+.-||
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y 50 (190)
T 2v57_A 11 ARERTRRAILDAAMLVLADH--PTAALGDIAAAAGVGRSTVH 50 (190)
T ss_dssp --CHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHH
Confidence 44445567888888998877 67999999999999887777
No 284
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=22.10 E-value=49 Score=26.55 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=35.6
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+.++.. +..+..++++.+++.+--+|-.++.|+.-|+|++.
T Consensus 20 IL~~L~~---~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~ 61 (202)
T 2p4w_A 20 ILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR 61 (202)
T ss_dssp HHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 4445543 35899999999999999999999999999999874
No 285
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=21.96 E-value=36 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHhC--------------CeeeEeeehhhHhhhhcceeecCC
Q 045382 120 NFLSLYNRDGVESIGLDDAASKLG--------------VERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 120 kFI~l~~~~~~~~i~L~~aA~~L~--------------V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.+-+.+...+ ....++|+.|| +.+=-+-.++..||..|+|++..+
T Consensus 58 ~lr~~i~~g~---~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 58 ILRRVYLDGP---VGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHHCS---BCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhCC---CCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 3334444443 33499999999 444448889999999999998643
No 286
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=21.90 E-value=53 Score=26.39 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=37.9
Q ss_pred hHHHHHHHHHH-HhhCCCceecHHHHHHHhCCeeeEeeehhhH-hhhhcceeecCC
Q 045382 114 LGLLCSNFLSL-YNRDGVESIGLDDAASKLGVERRRIYDIVNV-LESVGVLTRRAK 167 (191)
Q Consensus 114 L~~Lt~kFI~l-~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNV-LEslgLI~K~~K 167 (191)
|...-+.++.. +....+..+++..+|..||+.+..+|..+.- +...|+|.+..+
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 33344445544 3344455679999999999999999995554 777899987653
No 287
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.75 E-value=93 Score=22.94 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.++..++|+.+|+.|.-+.=+++-|+.-|+|+..++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 202 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 202 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCC
Confidence 578899999999999999999999999999998743
No 288
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.54 E-value=32 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRA 166 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~ 166 (191)
.++-.++|+.+|+.|.-+.=+++-|+.-|+|+..+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 36789999999999999999999999999999874
No 289
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=21.48 E-value=41 Score=24.28 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..-..|...-+++|.+.+-. ++++++|++.||.+.-||
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly 46 (190)
T 3jsj_A 7 KQSPRERLLEAAAALTYRDGVG-IGVEALCKAAGVSKRSMY 46 (190)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHH
Confidence 4445567888889999888888 999999999999887777
No 290
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=21.46 E-value=43 Score=28.46 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=47.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCeeeEeeehhh----Hhhhhcce---ee-cCCCceEE---ecccchHHHHHHHHHHh
Q 045382 121 FLSLYNRDGVESIGLDDAASKLGVERRRIYDIVN----VLESVGVL---TR-RAKNKYTW---KGFKAIRGALQELKVLL 189 (191)
Q Consensus 121 FI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiN----VLEslgLI---~K-~~Kn~y~W---~G~~~I~~tLekLk~Ei 189 (191)
...++.++|...++|...++++++.|+-+-+=+. +||..|+= +- ....-+.. .|.+.....++.|.+.|
T Consensus 12 ~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~~l~~~l 91 (291)
T 1o57_A 12 LTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSL 91 (291)
T ss_dssp HHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998886654444 77766653 22 22233443 35566666777777766
Q ss_pred c
Q 045382 190 R 190 (191)
Q Consensus 190 ~ 190 (191)
+
T Consensus 92 ~ 92 (291)
T 1o57_A 92 A 92 (291)
T ss_dssp T
T ss_pred H
Confidence 4
No 291
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=21.43 E-value=31 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=31.9
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCC
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 167 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~K 167 (191)
.....++|+.|++.+--+-.+++-|+.-|+|++...
T Consensus 24 ~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 345699999999999999999999999999999754
No 292
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.03 E-value=33 Score=25.66 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 110 KQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 110 keKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
++..-..|.+.-+++|.+.+-..++++++|++.||.|.-||
T Consensus 6 ~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y 46 (206)
T 1vi0_A 6 KRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIY 46 (206)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHH
Confidence 33444567788888888877778999999999999888777
No 293
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.95 E-value=71 Score=25.71 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 116 LLCSNFLSLYNR---DGVESI-GLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 116 ~Lt~kFI~l~~~---~~~~~i-~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+...+.+.+.. .++..+ +..++|+++||.|=-+-..++.|+.-|+|.+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 344445444433 356677 89999999999998899999999999999874
No 294
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=20.92 E-value=37 Score=24.72 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 116 LLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 116 ~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
.|.+..+++|.+.+-..++++++|++.||.|.-||
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y 41 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALY 41 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 46677788888887778999999999999877776
No 295
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.91 E-value=46 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.1
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeec
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRR 165 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~ 165 (191)
.+...++|+.+++.+=-+--+++-||.-|+|+|.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 3567899999999999999999999999999875
No 296
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=20.60 E-value=42 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+..-..|.+.-+++|.+.+-. ++++++|++.||.+--||
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY 52 (194)
T 2q24_A 14 QRNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLY 52 (194)
T ss_dssp --CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHH
Confidence 344567888888888877767 999999999999888777
No 297
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.59 E-value=42 Score=24.80 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
+..-..|...-+++|.+.+-..++++++|++.||.|.-||
T Consensus 6 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY 45 (197)
T 2gen_A 6 SSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLY 45 (197)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHH
Confidence 3344567777888888877778999999999999887777
No 298
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.53 E-value=10 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeeehhhHhhhhcceee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYDIVNVLESVGVLTR 164 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K 164 (191)
..+-.+.+..+... ..++..++|++||+.+--+-..++.|+.-|+|.+
T Consensus 12 d~l~~~Il~~l~~~--~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 12 DRIDRNILNELQKD--GRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CSHHHHHHHHHHHC--SSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hHHHHHHHHHHHhC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 44555666655443 4569999999999999999999999999999975
No 299
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=20.50 E-value=44 Score=25.23 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEee
Q 045382 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIY 150 (191)
Q Consensus 109 RkeKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIY 150 (191)
|++..-..|...-+++|.+.+-..++++++|+..||.|.-||
T Consensus 6 r~~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY 47 (215)
T 1ui5_A 6 RAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALY 47 (215)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhH
Confidence 444455677788888888887778999999999999988888
No 300
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=20.40 E-value=38 Score=27.60 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 111 QKSLGLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 111 eKSL~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..+-..|...-++++.+.+-..+++..+|+++||.+.-||=
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~ 66 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYY 66 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHT
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 56778899999999998877789999999999998888884
No 301
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.40 E-value=40 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCeeeEeee
Q 045382 115 GLLCSNFLSLYNRDGVESIGLDDAASKLGVERRRIYD 151 (191)
Q Consensus 115 ~~Lt~kFI~l~~~~~~~~i~L~~aA~~L~V~rRRIYD 151 (191)
..|.+..+++|.+.+-..++++++|++.||.|.-||-
T Consensus 11 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 11 EHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHH
Confidence 4577778888988887889999999999998877773
No 302
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.00 E-value=65 Score=24.70 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.1
Q ss_pred eecHHHHHHHhCCeeeEeeehhhHhhhhcceeecCCCceE
Q 045382 132 SIGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNKYT 171 (191)
Q Consensus 132 ~i~L~~aA~~L~V~rRRIYDIiNVLEslgLI~K~~Kn~y~ 171 (191)
.++..++|..+|+.|.-+.=+++-|+.-|+|+..+ +.+.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~-~~i~ 224 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR-KEIL 224 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET-TEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecC-CEEE
Confidence 47899999999999999999999999999998763 4443
Done!