BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045384
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 12 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNI 71
E+ KGPWT EED +I ++ +G W+ +AK R GK CR RW N+L P+VK+ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
T EE +I + H + GNRW++IAK LPGRTDN +KN W + +++++
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 49 RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKN 107
RT C+ RW L P++ +G T EE ++E K+G RWS IAKHL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 108 FWRTRIQKQIKQA 120
W + ++K+
Sbjct: 68 RWHNHLNPEVKKT 80
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPE 74
KGPWT EED +I + +G W +AK R GK CR RW N+L P+VK+ + T E
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
E +I E H GNRW++IAK LPGRTDN +KN W + I++++
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 64 PDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120
PD+ +G T EE ++EL K+G + W+ IAKHL GR + + W + ++K++
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 60
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 12 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNI 71
E+ KGPWT EED +I + +G W+ +AK R GK CR RW N+L P+VK+ +
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
T EE +I + H + GNRW++IAK LPGRTDN IKN W + +++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPE 74
K WT EED L + +G W +A RT C+ RW L P++ +G T E
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120
E +++L K+G RWS IAKHL GR + + W + ++K+
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 12 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNI 71
E+ KGPWT EED +I + +G W+ +AK R GK CR RW N+L P+VK+ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
T EE +I + H + GNRW++IAK LPGRTDN IKN W + +++++
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120
+G T EE +++L K+G RWS IAKHL GR + + W + ++K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 57
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPE 74
KGPWT EED +I + +G W+ +AK R GK CR RW N+L P+VK+ + T E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
E +I + H + GNRW++IAK LPGRTDN IKN W + +++++
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120
+G T EE +++L K+G RWS IAKHL GR + + W + ++K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 57
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPE 74
KGP+T ED ++ Y+ +G W + R+ K CR RW N+L P V + TPE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
E I + K G++WS IAK +PGRTDN IKN W + I K+I
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 13 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNIT 72
+K +T EED +L +A HG W +A A R + CR RW NYL P + T
Sbjct: 9 AKKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWT 66
Query: 73 PEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRT 111
EE L+++ ++G +W+ IAK PGRTD IKN W T
Sbjct: 67 AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPE 74
K +T EEDL L + +G W +++ + R + CR RW NY+ P ++ +PE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109
E +L+ + +A++G +W+KI+K L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 13 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVK 67
+R PW+ EED++L A +G WN ++K R+ + R RW+ R K
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGPK-WNKISKFLK-NRSDNNIRNRWMMIARHRAK 103
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 66 VKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
VK+ + T EE +I + H + GNRW++IAK LPGRTDN IKN W + +++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 65 DVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117
+VK+ + T EE ++ + H + GNRW++IAK LPGRTDN IKN W + +++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65
KGPWT EED LI + +G W+ +AK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFW 109
+G T EE +++L K+G RWS IAKHL GR + + W
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65
KGPWT EED +I + +G W+ +AK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFW 109
+G T EE +++L K+G RWS IAKHL GR + + W
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65
KGPWT EED +I + +G W+ +AK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRI 113
+G T EE ++EL K+G RWS IAKHL GR + + W +
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 118
T EE+ L + AK+G RW+KI+K + RT ++K++ R + ++K
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 WTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKR 68
W ED IL + +G+ W+ +A +++ K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 31.2 bits (69), Expect = 0.34, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 18 WTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWL 59
W +E+L+LI+ G G W +A G RT + CR +L
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 69 GNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115
G TPEE + EL K GN W+ I L GR+ + +K+ R R+ K
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD--RCRLMK 67
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109
T EEQLL ++ K+G + I+ + ++ ++KNF+
Sbjct: 77 TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 114
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62
K WT EED L + G+ W LA RT + C+ RWL L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109
T EEQLL ++ K+G + I+ + ++ ++KNF+
Sbjct: 80 TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 117
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 64 PDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 119
D++ G+IT I L + ++ + KHL +D+E+ + I Q+KQ
Sbjct: 229 SDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQY----IVSQVKQ 280
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65
K WT EED L + +G W +A RT C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65
K WT EED L + +G W +A RT C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109
T EEQLL ++ K+G + I+ + ++ ++KNF+
Sbjct: 137 TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 174
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 52 KSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109
+ C RW T EEQLL ++ K+G + I+ + ++ ++KNF+
Sbjct: 377 QKCNARW-------------TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 421
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 88 NRWSKIAKHLPGRTDNEIKNFW 109
+RW K+A+++ GRT E+K +
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|3FQG|A Chain A, Crystal Structure Of The S. Pombe Rai1
Length = 360
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 DKTPCNSQEAEVRKGPWTMEED 23
DK PC+++E++V T+EED
Sbjct: 205 DKKPCSAKESDVHSDDGTIEED 226
>pdb|3FQD|B Chain B, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 352
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 DKTPCNSQEAEVRKGPWTMEED 23
DK PC+++E++V T+EED
Sbjct: 205 DKKPCSAKESDVHSDDGTIEED 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,010,116
Number of Sequences: 62578
Number of extensions: 226198
Number of successful extensions: 580
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 60
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)