Query 045384
Match_columns 194
No_of_seqs 209 out of 1470
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 5E-37 1.7E-41 224.6 12.1 105 12-117 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 5.2E-37 1.8E-41 232.1 11.5 109 7-116 19-127 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 8.9E-37 3.1E-41 224.2 12.3 104 15-119 1-104 (107)
4 3osg_A MYB21; transcription-DN 100.0 1.3E-35 4.5E-40 223.9 13.0 106 9-116 5-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 4.8E-36 1.6E-40 227.7 10.5 105 15-120 2-106 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 9.9E-35 3.4E-39 227.0 11.3 109 7-116 50-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.4E-32 8.1E-37 213.5 5.4 104 13-117 4-108 (159)
8 2dim_A Cell division cycle 5-l 99.9 2.9E-24 9.8E-29 146.1 5.1 68 8-76 2-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.9 1.1E-22 3.6E-27 153.4 4.4 76 41-117 1-77 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.9 2.7E-21 9.4E-26 157.8 10.6 106 10-116 3-200 (246)
11 2d9a_A B-MYB, MYB-related prot 99.8 1.3E-19 4.3E-24 119.4 6.4 57 10-67 3-59 (60)
12 2juh_A Telomere binding protei 99.8 1.7E-19 5.9E-24 134.1 7.2 83 9-92 11-103 (121)
13 2llk_A Cyclin-D-binding MYB-li 99.8 9.6E-20 3.3E-24 124.4 5.0 59 54-113 9-67 (73)
14 1gvd_A MYB proto-oncogene prot 99.8 1.8E-19 6.1E-24 115.4 5.9 52 13-65 1-52 (52)
15 1guu_A C-MYB, MYB proto-oncoge 99.8 3.2E-19 1.1E-23 114.1 5.4 52 13-65 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.8 9.2E-19 3.1E-23 118.4 6.8 66 7-72 2-68 (69)
17 2roh_A RTBP1, telomere binding 99.8 2E-18 6.9E-23 128.5 8.2 80 9-89 25-114 (122)
18 2din_A Cell division cycle 5-l 99.8 1.6E-18 5.4E-23 116.2 6.6 60 61-121 2-61 (66)
19 2din_A Cell division cycle 5-l 99.7 7E-19 2.4E-23 118.0 3.7 59 8-69 2-60 (66)
20 2cu7_A KIAA1915 protein; nucle 99.7 5.9E-18 2E-22 115.4 7.3 58 62-119 3-60 (72)
21 1x41_A Transcriptional adaptor 99.7 4.2E-18 1.4E-22 112.2 6.0 54 11-65 4-57 (60)
22 3sjm_A Telomeric repeat-bindin 99.7 5.6E-18 1.9E-22 113.0 5.4 56 12-67 8-64 (64)
23 2elk_A SPCC24B10.08C protein; 99.7 2.6E-17 9E-22 107.6 6.4 54 9-62 3-56 (58)
24 2d9a_A B-MYB, MYB-related prot 99.7 1.2E-17 4E-22 109.9 4.4 55 63-117 3-58 (60)
25 2yum_A ZZZ3 protein, zinc fing 99.7 2.2E-17 7.6E-22 113.3 5.1 60 10-70 3-67 (75)
26 1guu_A C-MYB, MYB proto-oncoge 99.7 4E-17 1.4E-21 104.3 5.5 50 66-115 1-51 (52)
27 2llk_A Cyclin-D-binding MYB-li 99.7 6.2E-17 2.1E-21 110.4 6.3 60 3-66 11-70 (73)
28 1w0t_A Telomeric repeat bindin 99.7 5.1E-17 1.7E-21 104.3 5.4 50 14-63 1-51 (53)
29 2cu7_A KIAA1915 protein; nucle 99.7 4E-17 1.4E-21 111.2 4.8 59 8-68 2-60 (72)
30 1gvd_A MYB proto-oncogene prot 99.7 8.3E-17 2.8E-21 102.8 5.3 50 66-115 1-51 (52)
31 1ity_A TRF1; helix-turn-helix, 99.6 2.1E-16 7E-21 106.8 5.6 59 62-120 4-65 (69)
32 1x41_A Transcriptional adaptor 99.6 3.5E-16 1.2E-20 102.9 6.4 52 63-114 3-55 (60)
33 2dim_A Cell division cycle 5-l 99.6 1.2E-16 4.1E-21 108.2 4.2 58 63-120 4-62 (70)
34 1w0t_A Telomeric repeat bindin 99.6 3.3E-16 1.1E-20 100.5 5.8 49 67-115 1-52 (53)
35 2yum_A ZZZ3 protein, zinc fing 99.6 5.2E-16 1.8E-20 106.4 5.3 58 63-120 3-66 (75)
36 3zqc_A MYB3; transcription-DNA 99.6 3.2E-16 1.1E-20 118.3 4.3 85 7-97 46-130 (131)
37 3sjm_A Telomeric repeat-bindin 99.6 9.9E-16 3.4E-20 102.0 5.6 51 66-116 9-62 (64)
38 2elk_A SPCC24B10.08C protein; 99.6 3.1E-15 1E-19 97.7 6.5 50 64-113 5-56 (58)
39 2ltp_A Nuclear receptor corepr 99.3 2E-16 6.8E-21 112.1 0.0 56 61-116 9-64 (89)
40 2aje_A Telomere repeat-binding 99.6 3.3E-15 1.1E-19 108.5 6.3 80 9-88 7-95 (105)
41 2ckx_A NGTRF1, telomere bindin 99.5 1.1E-14 3.8E-19 101.6 7.6 69 16-85 1-79 (83)
42 1gv2_A C-MYB, MYB proto-oncoge 99.5 5.9E-15 2E-19 107.1 5.7 57 7-65 48-104 (105)
43 2yus_A SWI/SNF-related matrix- 99.5 1.9E-14 6.6E-19 99.6 7.2 53 8-62 11-63 (79)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2.6E-14 8.7E-19 97.5 6.5 51 64-114 14-68 (73)
45 2k9n_A MYB24; R2R3 domain, DNA 99.5 1E-14 3.5E-19 106.3 4.7 56 7-64 45-100 (107)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.6E-14 5.3E-19 98.5 4.8 55 8-63 11-68 (73)
47 2ltp_A Nuclear receptor corepr 99.2 3.5E-15 1.2E-19 105.6 0.0 55 8-64 9-63 (89)
48 3osg_A MYB21; transcription-DN 99.5 2.5E-14 8.6E-19 107.2 4.4 55 7-63 54-108 (126)
49 2yus_A SWI/SNF-related matrix- 99.4 7.9E-14 2.7E-18 96.5 5.0 48 65-112 15-62 (79)
50 1x58_A Hypothetical protein 49 99.4 1.7E-13 5.7E-18 89.8 5.6 49 67-115 7-58 (62)
51 2ckx_A NGTRF1, telomere bindin 99.4 3.4E-13 1.2E-17 94.1 6.8 49 69-117 1-54 (83)
52 1ign_A Protein (RAP1); RAP1,ye 99.4 2.4E-13 8.1E-18 111.1 4.6 55 64-118 4-64 (246)
53 2juh_A Telomere binding protei 99.4 8.1E-13 2.8E-17 98.1 6.8 55 62-116 11-70 (121)
54 2aje_A Telomere repeat-binding 99.4 1.3E-12 4.3E-17 94.9 7.2 53 64-116 9-66 (105)
55 2cjj_A Radialis; plant develop 99.4 1.5E-12 5.3E-17 92.6 6.9 50 67-116 7-60 (93)
56 2cjj_A Radialis; plant develop 99.3 1.9E-12 6.3E-17 92.1 4.6 48 14-62 7-57 (93)
57 2roh_A RTBP1, telomere binding 99.3 5.6E-12 1.9E-16 93.7 7.1 53 64-116 27-84 (122)
58 3hm5_A DNA methyltransferase 1 99.2 4.3E-11 1.5E-15 84.8 7.9 65 52-120 18-87 (93)
59 2eqr_A N-COR1, N-COR, nuclear 99.2 4.2E-11 1.4E-15 78.7 5.7 46 67-112 11-56 (61)
60 1x58_A Hypothetical protein 49 99.1 8.7E-11 3E-15 76.9 4.8 49 14-64 7-58 (62)
61 2eqr_A N-COR1, N-COR, nuclear 99.0 5E-10 1.7E-14 73.5 6.0 52 9-62 6-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 99.0 6.7E-10 2.3E-14 75.3 6.4 49 66-115 6-58 (72)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1E-09 3.5E-14 74.4 5.1 51 12-64 5-58 (72)
64 2iw5_B Protein corest, REST co 98.9 1.3E-09 4.3E-14 88.4 4.9 49 67-115 132-180 (235)
65 1fex_A TRF2-interacting telome 98.8 3.2E-09 1.1E-13 69.2 4.6 48 15-63 2-58 (59)
66 1wgx_A KIAA1903 protein; MYB D 98.8 5.1E-09 1.7E-13 70.9 5.0 49 15-64 8-59 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.8 8.2E-09 2.8E-13 69.9 5.2 47 68-114 8-58 (73)
68 2xag_B REST corepressor 1; ami 98.8 4.6E-09 1.6E-13 93.8 4.7 45 69-113 381-425 (482)
69 2iw5_B Protein corest, REST co 98.6 2.7E-08 9.1E-13 80.6 5.2 48 14-63 132-179 (235)
70 1fex_A TRF2-interacting telome 98.6 4.8E-08 1.6E-12 63.6 4.8 46 68-113 2-57 (59)
71 1ug2_A 2610100B20RIK gene prod 98.5 2.5E-07 8.7E-12 64.5 5.8 48 70-117 35-85 (95)
72 1ofc_X ISWI protein; nuclear p 98.4 1.8E-06 6.1E-11 73.2 11.2 104 16-120 111-280 (304)
73 2yqk_A Arginine-glutamic acid 98.4 6E-07 2.1E-11 59.0 6.4 48 64-111 5-53 (63)
74 4eef_G F-HB80.4, designed hema 98.4 1.2E-07 4E-12 63.9 1.7 44 15-59 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.7 6.3E-08 2.2E-12 64.0 0.0 45 70-115 16-63 (70)
76 4eef_G F-HB80.4, designed hema 98.3 9.2E-08 3.2E-12 64.4 0.7 43 68-110 20-66 (74)
77 4iej_A DNA methyltransferase 1 98.3 2.5E-06 8.5E-11 60.1 7.8 61 56-120 22-87 (93)
78 2yqk_A Arginine-glutamic acid 98.2 2.8E-06 9.5E-11 55.8 5.6 49 9-59 3-52 (63)
79 2crg_A Metastasis associated p 98.1 8.2E-06 2.8E-10 54.7 6.1 44 68-111 8-52 (70)
80 4a69_C Nuclear receptor corepr 98.0 8.9E-06 3E-10 57.6 6.0 45 68-112 43-87 (94)
81 3hm5_A DNA methyltransferase 1 98.0 9.6E-06 3.3E-10 57.2 5.0 47 16-63 31-81 (93)
82 2xag_B REST corepressor 1; ami 97.9 1.4E-05 4.9E-10 71.4 5.8 48 14-63 379-426 (482)
83 2crg_A Metastasis associated p 97.8 3.3E-05 1.1E-09 51.7 4.8 44 14-59 7-51 (70)
84 4a69_C Nuclear receptor corepr 97.8 2.8E-05 9.5E-10 55.0 4.6 43 15-59 43-85 (94)
85 1ug2_A 2610100B20RIK gene prod 97.7 2.7E-05 9.3E-10 54.2 4.2 46 16-62 34-81 (95)
86 2ebi_A DNA binding protein GT- 97.7 1.8E-05 6E-10 54.9 3.1 50 14-63 3-64 (86)
87 4b4c_A Chromodomain-helicase-D 97.7 0.00034 1.2E-08 55.8 10.1 101 14-115 6-196 (211)
88 2y9y_A Imitation switch protei 97.4 0.001 3.5E-08 57.7 10.7 105 16-121 124-297 (374)
89 2lr8_A CAsp8-associated protei 96.5 2.2E-05 7.6E-10 51.8 0.0 46 16-63 15-62 (70)
90 2ebi_A DNA binding protein GT- 97.4 0.00021 7.3E-09 49.3 4.8 50 67-116 3-66 (86)
91 4iej_A DNA methyltransferase 1 96.4 0.0049 1.7E-07 43.2 5.1 47 15-62 30-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.1 0.099 3.4E-06 34.0 7.0 47 67-113 6-57 (64)
93 1irz_A ARR10-B; helix-turn-hel 95.0 0.067 2.3E-06 34.8 5.8 50 12-61 4-56 (64)
94 1ofc_X ISWI protein; nuclear p 94.8 0.062 2.1E-06 45.4 6.6 47 68-114 110-157 (304)
95 4b4c_A Chromodomain-helicase-D 94.2 0.11 3.8E-06 40.9 6.7 51 67-117 6-61 (211)
96 2xb0_X Chromo domain-containin 93.0 0.072 2.4E-06 44.3 3.7 29 16-44 169-197 (270)
97 2xb0_X Chromo domain-containin 87.3 1.9 6.4E-05 35.7 7.4 49 68-116 3-56 (270)
98 2y9y_A Imitation switch protei 85.3 0.78 2.7E-05 39.7 4.2 46 14-59 227-286 (374)
99 2o8x_A Probable RNA polymerase 79.0 3.5 0.00012 25.5 4.7 43 71-115 16-58 (70)
100 2rq5_A Protein jumonji; develo 78.3 1.8 6.1E-05 31.4 3.4 57 25-84 46-113 (121)
101 1u78_A TC3 transposase, transp 77.8 15 0.00053 25.6 11.6 88 17-109 6-100 (141)
102 1ku3_A Sigma factor SIGA; heli 76.8 4.4 0.00015 25.7 4.7 44 71-116 11-58 (73)
103 2p7v_B Sigma-70, RNA polymeras 73.1 4.5 0.00015 25.3 4.0 39 76-115 10-52 (68)
104 2li6_A SWI/SNF chromatin-remod 72.9 2 7E-05 30.7 2.4 39 25-64 53-98 (116)
105 3cz6_A DNA-binding protein RAP 68.5 4.4 0.00015 31.0 3.5 24 11-34 110-141 (168)
106 2kk0_A AT-rich interactive dom 68.4 7 0.00024 29.0 4.6 58 25-82 68-138 (145)
107 1ig6_A MRF-2, modulator recogn 68.0 3.6 0.00012 28.8 2.8 41 25-65 37-88 (107)
108 1c20_A DEAD ringer protein; DN 68.0 3.7 0.00013 29.8 2.9 40 25-64 56-106 (128)
109 2jvw_A Uncharacterized protein 67.0 2.7 9.3E-05 28.6 1.9 45 23-80 18-69 (88)
110 3hug_A RNA polymerase sigma fa 66.9 9.2 0.00031 25.3 4.7 40 75-115 41-80 (92)
111 2jrz_A Histone demethylase jar 66.2 3.3 0.00011 29.6 2.3 40 25-64 44-93 (117)
112 2li6_A SWI/SNF chromatin-remod 63.8 6.4 0.00022 28.0 3.5 38 79-116 54-99 (116)
113 1x3u_A Transcriptional regulat 62.5 22 0.00075 22.3 5.8 42 71-115 17-58 (79)
114 1kkx_A Transcription regulator 62.0 10 0.00036 27.3 4.4 39 79-117 53-99 (123)
115 2lm1_A Lysine-specific demethy 61.6 18 0.00061 25.0 5.5 38 79-116 49-98 (107)
116 2cxy_A BAF250B subunit, HBAF25 60.7 4.8 0.00017 29.0 2.4 40 25-64 55-104 (125)
117 2lm1_A Lysine-specific demethy 60.5 4.4 0.00015 28.3 2.0 40 25-64 48-97 (107)
118 2jrz_A Histone demethylase jar 60.2 16 0.00053 26.0 5.0 39 78-116 44-94 (117)
119 1tty_A Sigma-A, RNA polymerase 60.1 15 0.00052 24.1 4.7 40 76-116 23-66 (87)
120 3ulq_B Transcriptional regulat 59.7 25 0.00086 23.4 5.8 45 68-115 27-71 (90)
121 1kkx_A Transcription regulator 59.1 3.1 0.0001 30.2 1.0 39 25-64 52-97 (123)
122 3c57_A Two component transcrip 58.9 21 0.00071 23.9 5.3 44 70-116 27-70 (95)
123 1je8_A Nitrate/nitrite respons 58.8 21 0.00071 23.1 5.2 43 70-115 21-63 (82)
124 1fse_A GERE; helix-turn-helix 57.4 24 0.00083 21.7 5.2 44 69-115 10-53 (74)
125 2p1m_A SKP1-like protein 1A; F 56.5 11 0.00037 28.2 3.8 35 39-81 119-153 (160)
126 2jxj_A Histone demethylase jar 55.9 5.1 0.00017 27.3 1.7 40 25-64 40-89 (96)
127 3i4p_A Transcriptional regulat 55.5 18 0.00062 26.6 4.9 43 74-117 3-46 (162)
128 2eqy_A RBP2 like, jumonji, at 54.8 6.1 0.00021 28.4 2.0 40 25-64 46-95 (122)
129 1p4w_A RCSB; solution structur 54.7 47 0.0016 22.5 7.2 45 68-115 32-76 (99)
130 2cxy_A BAF250B subunit, HBAF25 54.6 23 0.00079 25.3 5.2 40 78-117 55-106 (125)
131 1or7_A Sigma-24, RNA polymeras 54.4 22 0.00076 26.1 5.3 29 86-115 155-183 (194)
132 1xsv_A Hypothetical UPF0122 pr 53.2 27 0.00093 24.3 5.3 39 75-114 29-67 (113)
133 2jpc_A SSRB; DNA binding prote 52.4 27 0.00093 20.7 4.6 37 77-115 4-40 (61)
134 3v7d_A Suppressor of kinetocho 49.5 14 0.00047 27.9 3.4 36 38-81 126-161 (169)
135 3i4p_A Transcriptional regulat 48.3 15 0.00051 27.1 3.4 43 21-65 3-45 (162)
136 2eqy_A RBP2 like, jumonji, at 47.9 71 0.0024 22.6 7.8 39 79-117 47-97 (122)
137 3mzy_A RNA polymerase sigma-H 47.8 26 0.00088 24.7 4.6 30 85-115 122-151 (164)
138 1c20_A DEAD ringer protein; DN 46.7 36 0.0012 24.3 5.2 41 77-117 55-108 (128)
139 4ayb_F DNA-directed RNA polyme 45.7 26 0.0009 24.7 4.2 65 15-86 44-110 (113)
140 2yqf_A Ankyrin-1; death domain 44.9 38 0.0013 23.4 5.0 35 72-107 14-48 (111)
141 1tc3_C Protein (TC3 transposas 44.8 37 0.0013 18.5 5.5 38 70-109 5-42 (51)
142 2rnj_A Response regulator prot 44.8 27 0.00093 22.9 4.0 43 70-115 29-71 (91)
143 1rp3_A RNA polymerase sigma fa 44.7 36 0.0012 25.7 5.2 34 81-115 197-230 (239)
144 2kk0_A AT-rich interactive dom 44.0 34 0.0012 25.2 4.7 39 78-116 68-119 (145)
145 2dbb_A Putative HTH-type trans 43.9 55 0.0019 23.3 5.9 44 74-118 9-53 (151)
146 2rq5_A Protein jumonji; develo 43.8 37 0.0013 24.3 4.8 76 15-116 7-97 (121)
147 2of5_H Leucine-rich repeat and 42.7 31 0.0011 24.3 4.2 30 77-107 14-43 (118)
148 1qgp_A Protein (double strande 42.6 44 0.0015 21.6 4.7 44 72-116 12-59 (77)
149 3e7l_A Transcriptional regulat 42.2 47 0.0016 20.3 4.6 32 74-106 19-50 (63)
150 1s7o_A Hypothetical UPF0122 pr 41.3 45 0.0015 23.2 4.9 42 71-114 23-64 (113)
151 2of5_A Death domain-containing 41.1 34 0.0012 24.1 4.2 39 65-107 16-54 (114)
152 2ast_A S-phase kinase-associat 41.0 17 0.00059 26.9 2.7 55 19-81 95-154 (159)
153 2o71_A Death domain-containing 41.0 36 0.0012 24.0 4.3 36 67-106 18-53 (115)
154 2q1z_A RPOE, ECF SIGE; ECF sig 39.7 14 0.00048 27.1 2.0 29 86-115 150-178 (184)
155 2e1c_A Putative HTH-type trans 38.9 51 0.0017 24.5 5.2 43 74-117 27-70 (171)
156 3eyi_A Z-DNA-binding protein 1 37.3 37 0.0013 22.1 3.5 36 18-54 7-42 (72)
157 2cyy_A Putative HTH-type trans 37.0 65 0.0022 23.0 5.4 42 75-117 8-50 (151)
158 1ntc_A Protein (nitrogen regul 36.8 60 0.002 21.4 4.8 34 74-108 51-84 (91)
159 1qbj_A Protein (double-strande 36.1 67 0.0023 21.0 4.8 41 73-114 9-53 (81)
160 2e1c_A Putative HTH-type trans 35.4 39 0.0013 25.2 4.0 43 21-65 27-69 (171)
161 1wxp_A THO complex subunit 1; 35.1 48 0.0016 22.9 4.2 28 79-107 21-48 (110)
162 1dw9_A Cyanate lyase; cyanate 31.1 49 0.0017 24.8 3.8 30 77-107 16-45 (156)
163 2xzm_D Ribosomal protein S4 co 30.9 1.6E+02 0.0054 22.4 6.8 84 1-88 1-85 (181)
164 2lfw_A PHYR sigma-like domain; 30.9 45 0.0015 24.0 3.6 40 75-115 97-136 (157)
165 2cg4_A Regulatory protein ASNC 30.4 96 0.0033 22.0 5.4 44 75-119 9-53 (152)
166 2ib1_A Death domain containing 30.1 22 0.00074 24.1 1.5 33 73-107 5-37 (91)
167 3clo_A Transcriptional regulat 29.6 68 0.0023 25.1 4.7 43 70-115 197-239 (258)
168 1ngr_A P75 low affinity neurot 29.2 31 0.001 23.0 2.2 29 73-107 12-40 (85)
169 1fad_A Protein (FADD protein); 28.0 54 0.0019 22.0 3.4 29 78-107 16-44 (99)
170 2dn0_A Zinc fingers and homeob 27.8 1.2E+02 0.004 19.1 5.5 51 61-112 5-59 (76)
171 1i1g_A Transcriptional regulat 27.4 1E+02 0.0035 21.3 5.0 41 76-117 6-47 (141)
172 3t72_q RNA polymerase sigma fa 27.1 1.1E+02 0.0039 20.6 4.9 28 87-115 39-66 (99)
173 2p5v_A Transcriptional regulat 27.1 1.1E+02 0.0037 22.0 5.2 42 75-117 11-53 (162)
174 1g2h_A Transcriptional regulat 26.6 52 0.0018 20.0 2.8 32 17-50 17-48 (61)
175 2dbb_A Putative HTH-type trans 26.6 76 0.0026 22.5 4.2 40 21-62 9-48 (151)
176 1oyi_A Double-stranded RNA-bin 25.8 1.1E+02 0.0037 20.3 4.4 41 76-117 19-59 (82)
177 2pn6_A ST1022, 150AA long hypo 25.7 1.1E+02 0.0037 21.6 4.9 42 75-117 4-46 (150)
178 1umq_A Photosynthetic apparatu 25.7 85 0.0029 20.6 3.9 33 73-106 40-72 (81)
179 2cyy_A Putative HTH-type trans 24.8 85 0.0029 22.3 4.2 40 21-62 7-46 (151)
180 2ia0_A Putative HTH-type trans 24.6 1.2E+02 0.0042 22.2 5.2 43 74-117 17-60 (171)
181 2v79_A DNA replication protein 24.6 1.4E+02 0.0049 21.3 5.3 50 70-120 29-83 (135)
182 2ia0_A Putative HTH-type trans 22.7 77 0.0026 23.4 3.6 42 21-64 17-58 (171)
183 2p5v_A Transcriptional regulat 22.6 90 0.0031 22.5 4.0 42 21-64 10-51 (162)
184 2hyv_A Annexin A2; calcium-bin 22.1 1.3E+02 0.0043 24.7 5.1 95 18-114 2-121 (308)
185 2q0o_A Probable transcriptiona 22.0 1.8E+02 0.0062 22.1 5.9 45 68-115 173-217 (236)
186 3k6g_A Telomeric repeat-bindin 20.9 1.5E+02 0.005 20.8 4.4 69 23-96 14-92 (111)
187 3cz6_A DNA-binding protein RAP 20.7 58 0.002 24.7 2.5 28 53-80 98-126 (168)
188 2hzd_A Transcriptional enhance 20.5 1.3E+02 0.0045 20.0 4.0 23 14-36 5-27 (82)
189 2cfx_A HTH-type transcriptiona 20.5 1.8E+02 0.0063 20.3 5.2 42 75-117 6-48 (144)
190 1k78_A Paired box protein PAX5 20.5 2.2E+02 0.0076 19.8 10.4 78 16-97 31-118 (149)
191 2k27_A Paired box protein PAX- 20.4 2.3E+02 0.008 20.0 10.6 77 16-97 24-111 (159)
192 1w3w_A Annexin A8; coagulation 20.0 2.5E+02 0.0087 23.1 6.7 91 17-109 20-132 (327)
193 1l3l_A Transcriptional activat 20.0 1.7E+02 0.0057 22.4 5.2 44 69-115 172-215 (234)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=5e-37 Score=224.56 Aligned_cols=105 Identities=47% Similarity=0.872 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHH
Q 045384 12 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWS 91 (194)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~ 91 (194)
++++|+||+|||++|+++|+.||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||.+|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 92 KIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 92 ~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=5.2e-37 Score=232.07 Aligned_cols=109 Identities=44% Similarity=0.832 Sum_probs=103.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhh
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKW 86 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~ 86 (194)
+.++|.+++|+||+|||++|+++|+.||.++|..||..|| +|++.||++||.++|+|.+++++||+|||++|++++.+|
T Consensus 19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999888999999998 999999999999999999999999999999999999999
Q ss_pred cCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 87 GNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 87 G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
|++|+.||++|||||+++|++||+.+++++
T Consensus 98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988765
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=8.9e-37 Score=224.21 Aligned_cols=104 Identities=34% Similarity=0.639 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHh
Q 045384 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIA 94 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia 94 (194)
||+||+|||++|+.+|+.||..+|..||..|| +|++.||++||.++|+|.+++++||+|||.+|+++|..||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 78999999999999999999888999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHh
Q 045384 95 KHLPGRTDNEIKNFWRTRIQKQIKQ 119 (194)
Q Consensus 95 ~~l~gRt~~~~knrw~~~l~~~~~~ 119 (194)
++|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.3e-35 Score=223.94 Aligned_cols=106 Identities=38% Similarity=0.654 Sum_probs=101.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcC
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGN 88 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~ 88 (194)
..+..++|+||+|||++|+++|+.||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 457789999999999999999999997 7999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 89 RWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 89 ~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
+|+.||+.|||||+.+|++||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=4.8e-36 Score=227.71 Aligned_cols=105 Identities=42% Similarity=0.734 Sum_probs=101.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHh
Q 045384 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIA 94 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia 94 (194)
||+||+|||++|+.+|..||.++|..||..|| +|++.||++||.++|+|.+++++||+|||++|+++|..||.+|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhh
Q 045384 95 KHLPGRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 95 ~~l~gRt~~~~knrw~~~l~~~~~~~ 120 (194)
++|||||+++|++||+.++++.+...
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998876544
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=9.9e-35 Score=226.99 Aligned_cols=109 Identities=45% Similarity=0.829 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhh
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKW 86 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~ 86 (194)
|+++|.+++|+||+|||++|+.+|..||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||.+|++++..|
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 5799999999999999999999999999878999999998 999999999999999999999999999999999999999
Q ss_pred cCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 87 GNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 87 G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
|++|+.||++|||||+++|++||+.+++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.4e-32 Score=213.49 Aligned_cols=104 Identities=34% Similarity=0.668 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcC-cHH
Q 045384 13 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGN-RWS 91 (194)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~-~W~ 91 (194)
+++|+||+|||++|+++|+.||..+|..||+.|| +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|+
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 5799999999999999999999888999999998 99999999999999999999999999999999999999996 699
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 92 KIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 92 ~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
.||+.|||||+.+|++||..++.+.+
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 99999999999999999999886543
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.9e-24 Score=146.05 Aligned_cols=68 Identities=25% Similarity=0.574 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHH
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQ 76 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd 76 (194)
+..|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 456889999999999999999999999878999999999 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.1e-22 Score=153.40 Aligned_cols=76 Identities=33% Similarity=0.703 Sum_probs=51.8
Q ss_pred hhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 41 LAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGN-RWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 41 Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
||+.|+ +||+.||+.||.++|+|.+++++||+|||++|+++|..||. +|..||..|||||+.+|++||..++.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence 788998 99999999999999999999999999999999999999996 69999999999999999999999886543
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.85 E-value=2.7e-21 Score=157.81 Aligned_cols=106 Identities=18% Similarity=0.322 Sum_probs=92.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCc-----chhhhhhhhCCCcchhhhhhhhhhhcCCCcc-----------------
Q 045384 10 EAEVRKGPWTMEEDLILINYIANHGEG-----VWNSLAKAAGLKRTGKSCRLRWLNYLRPDVK----------------- 67 (194)
Q Consensus 10 ~p~~~kg~WT~eED~~L~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~----------------- 67 (194)
.+.++|++||+|||++|+++|.++|.. .|..||+.|+ |||+.|||.||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 356889999999999999999999864 3999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-h------------------------------------------------
Q 045384 68 ------------RGNITPEEQLLIMELHAK-W------------------------------------------------ 86 (194)
Q Consensus 68 ------------~~~WT~eEd~~Ll~~~~~-~------------------------------------------------ 86 (194)
+..||.+||-.|+..+.+ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1
Q ss_pred -----cC----cHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 87 -----GN----RWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 87 -----G~----~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
|. .|.+||+.+|+||.+++|+||+..+++.
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888765
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=119.40 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCcc
Q 045384 10 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVK 67 (194)
Q Consensus 10 ~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~ 67 (194)
.|.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999878999999998 99999999999999999875
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.78 E-value=1.7e-19 Score=134.07 Aligned_cols=83 Identities=20% Similarity=0.423 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhh----CCCcchhhhhhhhhhhcC-----CCccCC-CCCHHHHHH
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAA----GLKRTGKSCRLRWLNYLR-----PDVKRG-NITPEEQLL 78 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~R~~~~L~-----p~~~~~-~WT~eEd~~ 78 (194)
+.+..++++||+|||+.|+.+|++||.++|..|++.+ + +||+.+|++||+++|+ |.++++ +|+++|+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 5678899999999999999999999998899999985 5 8999999999999998 999998 999999999
Q ss_pred HHHHHHhhcCcHHH
Q 045384 79 IMELHAKWGNRWSK 92 (194)
Q Consensus 79 Ll~~~~~~G~~W~~ 92 (194)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.78 E-value=9.6e-20 Score=124.40 Aligned_cols=59 Identities=31% Similarity=0.413 Sum_probs=47.3
Q ss_pred hhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHH
Q 045384 54 CRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRI 113 (194)
Q Consensus 54 cr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l 113 (194)
+--||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999 999999999998653
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.78 E-value=1.8e-19 Score=115.36 Aligned_cols=52 Identities=46% Similarity=0.848 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 13 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
+++|+||+|||++|+++|..||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999998 999999999999999984
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.77 E-value=3.2e-19 Score=114.12 Aligned_cols=52 Identities=33% Similarity=0.640 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 13 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
+++|+||+|||++|+++|+.||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999998 999999999999999984
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.76 E-value=9.2e-19 Score=118.42 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCC-CcchhhhhhhhhhhcCCCccCCCCC
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGL-KRTGKSCRLRWLNYLRPDVKRGNIT 72 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~R~~~~L~p~~~~~~WT 72 (194)
|..+|..++++||+|||++|+.+|++||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 35678899999999999999999999998789999999975 8999999999999999999887653
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.75 E-value=2e-18 Score=128.50 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhh----CCCcchhhhhhhhhhhc-----CCCccCCCCCHHH-HHH
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAA----GLKRTGKSCRLRWLNYL-----RPDVKRGNITPEE-QLL 78 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~R~~~~L-----~p~~~~~~WT~eE-d~~ 78 (194)
.....++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||++++ +|.++++.|+++| +..
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 3456679999999999999999999998999999975 5 899999999999999 8999999999999 789
Q ss_pred HHHHHHhhcCc
Q 045384 79 IMELHAKWGNR 89 (194)
Q Consensus 79 Ll~~~~~~G~~ 89 (194)
|++++..+|++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999975
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=116.22 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=57.0
Q ss_pred hcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhh
Q 045384 61 YLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE 121 (194)
Q Consensus 61 ~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~~~ 121 (194)
+|+|.+++++||+|||++|++++..+|.+|..||+ ++|||+.||++||..++++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999987653
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7e-19 Score=117.96 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCC
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRG 69 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~ 69 (194)
+|+|.+++++||+|||++|+++|+.+|. +|..||+ ++ +||+.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 7999999999999999999999999997 6999999 76 7999999999999999877654
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=5.9e-18 Score=115.37 Aligned_cols=58 Identities=29% Similarity=0.364 Sum_probs=55.1
Q ss_pred cCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 045384 62 LRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 119 (194)
Q Consensus 62 L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~ 119 (194)
++|.+++++||+|||++|+++|..||.+|..||++|||||+.+||+||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998665
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.2e-18 Score=112.16 Aligned_cols=54 Identities=20% Similarity=0.546 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 11 AEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 11 p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
|.+.+++||+|||++|+++|+.||..+|..||+.|| +||+.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 678999999999999999999999878999999998 999999999999999875
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.72 E-value=5.6e-18 Score=112.98 Aligned_cols=56 Identities=27% Similarity=0.460 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhC-CCcchhhhhhhhhhhcCCCcc
Q 045384 12 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAG-LKRTGKSCRLRWLNYLRPDVK 67 (194)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~R~~~~L~p~~~ 67 (194)
..+|++||+|||++|+++|++||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35799999999999999999999888999999864 289999999999999998764
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.70 E-value=2.6e-17 Score=107.62 Aligned_cols=54 Identities=28% Similarity=0.516 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
....+.+++||+|||++|+++|++||.++|..||+.||.+||++||++||.+++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 345677999999999999999999998889999999976899999999999876
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.2e-17 Score=109.89 Aligned_cols=55 Identities=24% Similarity=0.406 Sum_probs=51.1
Q ss_pred CCCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 63 RPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 63 ~p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
+|.+++++||+|||++|+++|.+|| .+|+.||++|+|||+.||++||..+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 599999999999999999999999887653
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=113.27 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----cchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCC
Q 045384 10 EAEVRKGPWTMEEDLILINYIANHGE-----GVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGN 70 (194)
Q Consensus 10 ~p~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~ 70 (194)
+|.+.+++||+|||++|+++|..||. .+|..||+.|+ +||+.||+.||++||.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999996 67999999999 99999999999999988766543
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=4e-17 Score=104.29 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=45.8
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 66 VKRGNITPEEQLLIMELHAKWGN-RWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 66 ~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
+++++||+|||++|+++|..||. +|+.||+.|||||+.||++||..+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999998764
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=110.44 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCc
Q 045384 3 KTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDV 66 (194)
Q Consensus 3 r~~~n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~ 66 (194)
....|.++|.+++|+||+|||++|+++|++||.+ |..||+.| +||+.||+.||.. |....
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHc
Confidence 3456799999999999999999999999999976 99999999 7999999999985 54443
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.67 E-value=5.1e-17 Score=104.29 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCC-CcchhhhhhhhhhhcC
Q 045384 14 RKGPWTMEEDLILINYIANHGEGVWNSLAKAAGL-KRTGKSCRLRWLNYLR 63 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~R~~~~L~ 63 (194)
++|+||+|||++|+.+|+.||.++|..||..|+. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998789999999975 6999999999999885
No 29
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=4e-17 Score=111.21 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccC
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKR 68 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~ 68 (194)
+..|.+++|+||+|||++|+++|+.||. +|..||+.|| +||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999997 6999999998 999999999999999876554
No 30
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=8.3e-17 Score=102.82 Aligned_cols=50 Identities=36% Similarity=0.691 Sum_probs=46.4
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 66 VKRGNITPEEQLLIMELHAKWGN-RWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 66 ~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 699999999999999999999988753
No 31
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=2.1e-16 Score=106.78 Aligned_cols=59 Identities=29% Similarity=0.345 Sum_probs=53.4
Q ss_pred cCCCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCC--CCCHHHHHHHHHHHHHHHHHhh
Q 045384 62 LRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLP--GRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 62 L~p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~--gRt~~~~knrw~~~l~~~~~~~ 120 (194)
..+...+++||+|||++|+++|..|| ++|+.||..|+ |||+.||++||+.++++.+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45667889999999999999999999 69999999999 9999999999999999876543
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.5e-16 Score=102.87 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=48.3
Q ss_pred CCCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 63 RPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 63 ~p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
.+.+.+++||+|||++|+++|..|| .+|..||++|+|||+.||++||..++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4678899999999999999999999 799999999999999999999987764
No 33
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=108.19 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=53.3
Q ss_pred CCCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q 045384 63 RPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 63 ~p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~~ 120 (194)
.|.+++++||+|||++|+++|.+|| .+|..||.+|+|||+.||++||..+|++.+++.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~ 62 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCC
Confidence 4678899999999999999999999 799999999999999999999999998876543
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=3.3e-16 Score=100.47 Aligned_cols=49 Identities=35% Similarity=0.423 Sum_probs=45.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCC--CCCHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWG-NRWSKIAKHLP--GRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~--gRt~~~~knrw~~~l~~ 115 (194)
++++||+|||++|+++|..|| ++|+.||..|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 468999999999999999999 69999999999 99999999999998764
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=106.37 Aligned_cols=58 Identities=28% Similarity=0.294 Sum_probs=52.9
Q ss_pred CCCccCCCCCHHHHHHHHHHHHhhc------CcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q 045384 63 RPDVKRGNITPEEQLLIMELHAKWG------NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 63 ~p~~~~~~WT~eEd~~Ll~~~~~~G------~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~~ 120 (194)
+|.+.+++||+|||++|+++|..|| .+|..||.+|+|||..||++||..+|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4788899999999999999999999 789999999999999999999998888765544
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.60 E-value=3.2e-16 Score=118.29 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhh
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKW 86 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~ 86 (194)
|+++|.+++|+||+|||++|+.+|..||. .|..||+.|| +||+.||+.||.++|++.+..++|+.+- +......
T Consensus 46 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k 119 (131)
T 3zqc_A 46 NHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK 119 (131)
T ss_dssp HHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred hccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence 57999999999999999999999999996 5999999998 9999999999999999999988877652 1111233
Q ss_pred cCcHHHHhhhC
Q 045384 87 GNRWSKIAKHL 97 (194)
Q Consensus 87 G~~W~~Ia~~l 97 (194)
+.+|+.|++.+
T Consensus 120 k~~~~~i~k~~ 130 (131)
T 3zqc_A 120 KRKAADVPKKL 130 (131)
T ss_dssp -----------
T ss_pred hhhhhhcchhc
Confidence 45688888765
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=9.9e-16 Score=102.02 Aligned_cols=51 Identities=33% Similarity=0.494 Sum_probs=46.1
Q ss_pred ccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCC--CCCHHHHHHHHHHHHHHH
Q 045384 66 VKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLP--GRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 66 ~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~--gRt~~~~knrw~~~l~~~ 116 (194)
.++++||+|||++|+++|.+|| .+|+.||+.++ |||+.||++||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4678999999999999999999 58999999876 999999999999988764
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=3.1e-15 Score=97.73 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=45.7
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhhhCC-CCCHHHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLP-GRTDNEIKNFWRTRI 113 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~~l~-gRt~~~~knrw~~~l 113 (194)
..+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.||++||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998753
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=2e-16 Score=112.05 Aligned_cols=56 Identities=25% Similarity=0.254 Sum_probs=52.9
Q ss_pred hcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 61 YLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 61 ~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
.+.|.+.+++||+|||++|+++|..||.+|+.||++|||||+.+|++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999988775
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.57 E-value=3.3e-15 Score=108.53 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=67.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhC---CCcchhhhhhhhhhhc-----CCCccCCCCCHHHHHH-H
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAG---LKRTGKSCRLRWLNYL-----RPDVKRGNITPEEQLL-I 79 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qcr~R~~~~L-----~p~~~~~~WT~eEd~~-L 79 (194)
..+..++++||+|||+.|+.+|++||.++|..|++.++ .+||+.+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678899999999999999999999989999999752 3899999999999999 6888888888777665 7
Q ss_pred HHHHHhhcC
Q 045384 80 MELHAKWGN 88 (194)
Q Consensus 80 l~~~~~~G~ 88 (194)
++++..+|.
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.55 E-value=1.1e-14 Score=101.62 Aligned_cols=69 Identities=22% Similarity=0.432 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhh----hCCCcchhhhhhhhhhhc-----CCCccCC-CCCHHHHHHHHHHHHh
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKA----AGLKRTGKSCRLRWLNYL-----RPDVKRG-NITPEEQLLIMELHAK 85 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~R~~~~L-----~p~~~~~-~WT~eEd~~Ll~~~~~ 85 (194)
.+||+|||+.|+.+|++||.++|..|++. ++ +||+.+|++||++++ .|.++++ +..++....++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999996 76 999999999999998 5665554 6777887888887754
No 42
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=5.9e-15 Score=107.11 Aligned_cols=57 Identities=32% Similarity=0.520 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
|+++|.+++|+||+|||++|+.+|..||. .|..||+.|| +||+.||+.||..+|+..
T Consensus 48 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 48 NHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred hccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 47999999999999999999999999996 5999999998 999999999999988754
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=99.57 Aligned_cols=53 Identities=25% Similarity=0.498 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
+-.+...+++||+|||++|+++|++|| .+|..||++|| +||+.||+.||.++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 345667799999999999999999999 78999999999 999999999999983
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=2.6e-14 Score=97.46 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=46.7
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhc----CcHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWG----NRWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
+...+++||.|||.+|++++..|| .+|.+||++|||||..+|++||..+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999 689999999999999999999988754
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.51 E-value=1e-14 Score=106.34 Aligned_cols=56 Identities=32% Similarity=0.602 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
|+++|.+++|+||+|||++|+.+|..||. .|..||+.|| +||+.||+.||..++..
T Consensus 45 ~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 45 NYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred HHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence 46999999999999999999999999996 5999999998 99999999999988754
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=1.6e-14 Score=98.53 Aligned_cols=55 Identities=16% Similarity=0.418 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhC---CcchhhhhhhhCCCcchhhhhhhhhhhcC
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHG---EGVWNSLAKAAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~ 63 (194)
..++...+++||++||++|+.+|..|| ..+|..||+.|| +||+.||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 356778899999999999999999999 347999999999 9999999999998775
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-15 Score=105.58 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 8 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 8 ~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
...|.+++|+||+|||++|+++|..||. +|..||..|| +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 6889999999999999999999999997 5999999999 99999999999999864
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.47 E-value=2.5e-14 Score=107.22 Aligned_cols=55 Identities=31% Similarity=0.543 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcC
Q 045384 7 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 7 n~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~ 63 (194)
|+++|.+++|+||+|||++|+.+|..||. .|..||+.|| +||+.||+.||..+++
T Consensus 54 ~~l~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 54 NYLAPSISHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFP-GRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHTSTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred hhcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 46999999999999999999999999995 5999999998 9999999999998874
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.44 E-value=7.9e-14 Score=96.49 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=44.4
Q ss_pred CccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHH
Q 045384 65 DVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTR 112 (194)
Q Consensus 65 ~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~ 112 (194)
...+++||+|||++|+++|.+||.+|..||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999654
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.7e-13 Score=89.83 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=45.3
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCcHHHHh---hhCCCCCHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGNRWSKIA---KHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia---~~l~gRt~~~~knrw~~~l~~ 115 (194)
++.+||+|||+.|++.|++||.+|+.|+ ..++|||..+||+||+.+.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 577899999999999988764
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.42 E-value=3.4e-13 Score=94.06 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhhcC-cHHHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 045384 69 GNITPEEQLLIMELHAKWGN-RWSKIAKH----LPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 69 ~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~l~~~~ 117 (194)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999996 899999999999999988653
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.38 E-value=2.4e-13 Score=111.07 Aligned_cols=55 Identities=25% Similarity=0.499 Sum_probs=48.7
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhcCc------HHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWGNR------WSKIAKHLPGRTDNEIKNFWRTRIQKQIK 118 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G~~------W~~Ia~~l~gRt~~~~knrw~~~l~~~~~ 118 (194)
+.+++++||+|||++|+++|.++|++ |..||++|||||+++||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999975 99999999999999999999999999765
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.37 E-value=8.1e-13 Score=98.10 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=50.0
Q ss_pred cCCCccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 045384 62 LRPDVKRGNITPEEQLLIMELHAKWGN-RWSKIAKH----LPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 62 L~p~~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~l~~~ 116 (194)
+.+...+++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456678899999999999999999997 99999997 48999999999999999853
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=1.3e-12 Score=94.89 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=48.0
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhhC----CCCCHHHHHHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWGN-RWSKIAKHL----PGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~l----~gRt~~~~knrw~~~l~~~ 116 (194)
+...+++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4567899999999999999999996 999999965 8999999999999988753
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.35 E-value=1.5e-12 Score=92.56 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhc----CcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWG----NRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
.+++||.|||++|++++..|| .+|.+||+.|||||..+|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 367999999999999999996 67999999999999999999999988764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.29 E-value=1.9e-12 Score=92.13 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 14 RKGPWTMEEDLILINYIANHG---EGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
.+++||+|||++|..++..|| ...|..||+.|| |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 578999999999999999997 356999999999 999999999999875
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=5.6e-12 Score=93.67 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=47.7
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhcC-cHHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWGN-RWSKIAKH----LPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~l~~~ 116 (194)
....+++||.|||+.|+++|.+||. +|+.|++. |+|||..+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456889999999999999999996 99999996 48999999999999998764
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.3e-11 Score=84.78 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred hhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhC-----CCCCHHHHHHHHHHHHHHHHHhh
Q 045384 52 KSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHL-----PGRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 52 ~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l-----~gRt~~~~knrw~~~l~~~~~~~ 120 (194)
.=+.++|.++|.+ .+||.||+..|++++++||.+|..|+..+ ++||..+||+||..+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567999999976 79999999999999999999999999999 58999999999999988877654
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.2e-11 Score=78.69 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTR 112 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~ 112 (194)
..++||+||++++++++..||.+|..||.+|||||..+|..+|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999764
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=8.7e-11 Score=76.89 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhhh---hhhCCCcchhhhhhhhhhhcCC
Q 045384 14 RKGPWTMEEDLILINYIANHGEGVWNSLA---KAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
.+.+||+|||+.|++.|++||. +|..|+ ..++ +||...+++||+++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 7889999999999999999997 799999 4665 99999999999987653
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5e-10 Score=73.48 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
.+..-..++||+||++++.+++..|| ++|..||..|| +||..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 33445678999999999999999999 57999999999 999999999986543
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=6.7e-10 Score=75.28 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=43.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhhc----CcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 66 VKRGNITPEEQLLIMELHAKWG----NRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 66 ~~~~~WT~eEd~~Ll~~~~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
...+.||.||+++|..++..|+ .+|.+||..+ |||..+|++||..+.+.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 4567899999999999999997 5799999998 99999999999887544
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1e-09 Score=74.39 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---cchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 12 EVRKGPWTMEEDLILINYIANHGE---GVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
....+.||.|||++|.+++..|+. ..|..||..+ +||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 456789999999999999999973 4699999998 59999999999987643
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.89 E-value=1.3e-09 Score=88.39 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=45.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..++||+||+.++++++..||++|..||+.+++||..|||++|....++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999987665
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.83 E-value=3.2e-09 Score=69.20 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCcchhhhhh-hhCCCcchhhhhhhhhhhcC
Q 045384 15 KGPWTMEEDLILINYIANH--------GEGVWNSLAK-AAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~R~~~~L~ 63 (194)
+.+||+|||++|+.+|..+ |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 787 9999999999999885
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=5.1e-09 Score=70.94 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---cchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 15 KGPWTMEEDLILINYIANHGE---GVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
...||.+|+++|..++..|+. .+|..||..+| +||..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 457999999999999999975 47999999999 99999999999987643
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=8.2e-09 Score=69.90 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcC----cHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGN----RWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~----~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
...||.+|+++|..++..|+. +|..||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 468999999999999999984 69999999999999999999987743
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.76 E-value=4.6e-09 Score=93.84 Aligned_cols=45 Identities=27% Similarity=0.418 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHH
Q 045384 69 GNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRI 113 (194)
Q Consensus 69 ~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l 113 (194)
..||+||.+++++++.+||..|..||+.+++||..|||++|....
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997643
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.64 E-value=2.7e-08 Score=80.65 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcC
Q 045384 14 RKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~ 63 (194)
..++||+||++++++++.+|| ++|..||+.+| +||..||+..|.++.+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 467899999999999999999 56999999999 9999999999998775
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.60 E-value=4.8e-08 Score=63.58 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhh--------cCc-HHHHhh-hCCCCCHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKW--------GNR-WSKIAK-HLPGRTDNEIKNFWRTRI 113 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~--------G~~-W~~Ia~-~l~gRt~~~~knrw~~~l 113 (194)
+.+||+|||..|++.|..+ |+. |..||+ .+|++|-.++|+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 554 999999 899999999999997765
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.47 E-value=2.5e-07 Score=64.47 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhhcC---cHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGN---RWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~---~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-||.|||..||...++-|. .|..||+.|.+|+++||++||+.+++=..
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999996 79999999999999999999999887653
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.43 E-value=1.8e-06 Score=73.23 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhh-------hhhhh---------------------------
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRL-------RWLNY--------------------------- 61 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~-------R~~~~--------------------------- 61 (194)
+.||..+...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 899988843 22100
Q ss_pred -------------c---CCCccCCCCCHHHHHHHHHHHHhhcC----cHHHHhh------------hCCCCCHHHHHHHH
Q 045384 62 -------------L---RPDVKRGNITPEEQLLIMELHAKWGN----RWSKIAK------------HLPGRTDNEIKNFW 109 (194)
Q Consensus 62 -------------L---~p~~~~~~WT~eEd~~Ll~~~~~~G~----~W~~Ia~------------~l~gRt~~~~knrw 109 (194)
| .+.-++..||++||..||-++.+||- .|..|.. ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01124568999999999999999995 5999962 44689999999999
Q ss_pred HHHHHHHHHhh
Q 045384 110 RTRIQKQIKQA 120 (194)
Q Consensus 110 ~~~l~~~~~~~ 120 (194)
.++++-..+..
T Consensus 270 ~tLi~~iekE~ 280 (304)
T 1ofc_X 270 NTLITLIEREN 280 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99997655443
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=6e-07 Score=59.03 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=44.0
Q ss_pred CCccCCCCCHHHHHHHHHHHHhhcCcHHHHhh-hCCCCCHHHHHHHHHH
Q 045384 64 PDVKRGNITPEEQLLIMELHAKWGNRWSKIAK-HLPGRTDNEIKNFWRT 111 (194)
Q Consensus 64 p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~-~l~gRt~~~~knrw~~ 111 (194)
|.+....||+||-.+..+++..||..|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56777899999999999999999999999999 5899999999998864
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.35 E-value=1.2e-07 Score=63.88 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc---chhhhhhhhCCCcchhhhhhhhh
Q 045384 15 KGPWTMEEDLILINYIANHGEG---VWNSLAKAAGLKRTGKSCRLRWL 59 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~R~~ 59 (194)
.+.||.+|+++|..++..|+.. .|.+||..|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999754 6999999999 999999999985
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.67 E-value=6.3e-08 Score=64.00 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhcC---cHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGN---RWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~---~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
-||.|||..||..+.+-|. .|..||+.| +||++||++||..+++=
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999987753
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.32 E-value=9.2e-08 Score=64.37 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcC----cHHHHhhhCCCCCHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGN----RWSKIAKHLPGRTDNEIKNFWR 110 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~----~W~~Ia~~l~gRt~~~~knrw~ 110 (194)
...||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999884
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.31 E-value=2.5e-06 Score=60.08 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred hhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCC-----CCCHHHHHHHHHHHHHHHHHhh
Q 045384 56 LRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLP-----GRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 56 ~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~-----gRt~~~~knrw~~~l~~~~~~~ 120 (194)
+.|..+|.. ..||.||-..|+++++.|+-+|..|+..+. +||-.++|.||..+.++.+...
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 457777753 689999999999999999999999999874 7999999999999988876554
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.8e-06 Score=55.80 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhh-hhCCCcchhhhhhhhh
Q 045384 9 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAK-AAGLKRTGKSCRLRWL 59 (194)
Q Consensus 9 ~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~R~~ 59 (194)
-.|.+....||+||-+++.+++..||. +|..|++ .++ +|+..+|..-|-
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 357788899999999999999999995 6999999 588 999999998764
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.07 E-value=8.2e-06 Score=54.66 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCcHHHHhh-hCCCCCHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGNRWSKIAK-HLPGRTDNEIKNFWRT 111 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~-~l~gRt~~~~knrw~~ 111 (194)
...||+||-.+..+++..||..|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999998863
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.03 E-value=8.9e-06 Score=57.59 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTR 112 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~ 112 (194)
...||+||..+..+++..||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988643
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.96 E-value=9.6e-06 Score=57.21 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhhhC----CCcchhhhhhhhhhhcC
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKAAG----LKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~R~~~~L~ 63 (194)
++||.||+..|++++++|+.. |..|+..+. .+||..++++||..+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999975 999999992 27999999999986543
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.87 E-value=1.4e-05 Score=71.40 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcC
Q 045384 14 RKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~ 63 (194)
...+||.+|-+++++++.+||. +|..||..+| +||..||+..|.++-.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4678999999999999999995 7999999999 9999999998876543
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.77 E-value=3.3e-05 Score=51.65 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhhhh-hhCCCcchhhhhhhhh
Q 045384 14 RKGPWTMEEDLILINYIANHGEGVWNSLAK-AAGLKRTGKSCRLRWL 59 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~R~~ 59 (194)
....||+||-+++.+++..||. +|..|++ .++ +|+..+|..-|-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3467999999999999999995 6999999 588 999999998775
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.76 E-value=2.8e-05 Score=55.01 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhh
Q 045384 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWL 59 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~ 59 (194)
...||+||-+++.+++..|| ++|..||..+| +||..+|..-|-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 46799999999999999999 56999999998 999999998764
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=2.7e-05 Score=54.24 Aligned_cols=46 Identities=17% Similarity=0.401 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--cchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 16 GPWTMEEDLILINYIANHGE--GVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
--||.|||..|+...++.|. +-|..||+.++ +|++.|+++|++.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 45999999999999999875 35999999998 999999999998643
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.73 E-value=1.8e-05 Score=54.85 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------cchhhhhhhhC---CCcchhhhhhhhhhhcC
Q 045384 14 RKGPWTMEEDLILINYIANHGE---------GVWNSLAKAAG---LKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qcr~R~~~~L~ 63 (194)
+...||.+|-.+|+.+...... ..|..||..|. -.|++.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999976321 15999999863 47999999999998653
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.66 E-value=0.00034 Score=55.79 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=69.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--Ccchhhhhhh--hCCCcchhhhhhhhh-------hhcC-------------------
Q 045384 14 RKGPWTMEEDLILINYIANHG--EGVWNSLAKA--AGLKRTGKSCRLRWL-------NYLR------------------- 63 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~R~~-------~~L~------------------- 63 (194)
....||..|-..|+.++.+|| ...|..|+.. +. +++...+..-+. ..+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 446799999999999999999 5679999865 33 566665532111 1000
Q ss_pred ---------------------------------------------CCccCCCCCHHHHHHHHHHHHhhc-CcHHHHhh--
Q 045384 64 ---------------------------------------------PDVKRGNITPEEQLLIMELHAKWG-NRWSKIAK-- 95 (194)
Q Consensus 64 ---------------------------------------------p~~~~~~WT~eEd~~Ll~~~~~~G-~~W~~Ia~-- 95 (194)
+......||.+||..||-.+.+|| ++|..|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 001123599999999999999999 89999954
Q ss_pred hC------------CCCCHHHHHHHHHHHHHH
Q 045384 96 HL------------PGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 96 ~l------------~gRt~~~~knrw~~~l~~ 115 (194)
.| ..++...+..|...+|+-
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 21 124566799998777663
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.43 E-value=0.001 Score=57.70 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcC--------------------------------
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLR-------------------------------- 63 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~-------------------------------- 63 (194)
+.||.-+=..++.++.+||..+-..||..|+.+++...|+ +|...+-
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888889999999999999999999995468888875 2222110
Q ss_pred -------------------CCc--cCCCCCHHHHHHHHHHHHhhcC----cHHHHhhh------------CCCCCHHHHH
Q 045384 64 -------------------PDV--KRGNITPEEQLLIMELHAKWGN----RWSKIAKH------------LPGRTDNEIK 106 (194)
Q Consensus 64 -------------------p~~--~~~~WT~eEd~~Ll~~~~~~G~----~W~~Ia~~------------l~gRt~~~~k 106 (194)
+.- ++..||++||..||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 001 3457999999999999999994 59999332 3589999999
Q ss_pred HHHHHHHHHHHHhhh
Q 045384 107 NFWRTRIQKQIKQAE 121 (194)
Q Consensus 107 nrw~~~l~~~~~~~~ 121 (194)
.|-.++++-..+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999987665544
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.53 E-value=2.2e-05 Score=51.81 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCc--chhhhhhhhCCCcchhhhhhhhhhhcC
Q 045384 16 GPWTMEEDLILINYIANHGEG--VWNSLAKAAGLKRTGKSCRLRWLNYLR 63 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qcr~R~~~~L~ 63 (194)
-.||.|||..|+..+++.|.. -|..||..+ +|++.|+.+||+.++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 359999999999999998862 499999998 5999999999987654
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.38 E-value=0.00021 Score=49.26 Aligned_cols=50 Identities=12% Similarity=0.340 Sum_probs=41.3
Q ss_pred cCCCCCHHHHHHHHHHHHhhcC----------cHHHHhhhCC----CCCHHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGN----------RWSKIAKHLP----GRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~----------~W~~Ia~~l~----gRt~~~~knrw~~~l~~~ 116 (194)
+...||.+|-.+||+++..... .|..||..|. .||+.||+++|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999976321 5999999863 699999999999887664
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.42 E-value=0.0049 Score=43.17 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhhhhhhC----CCcchhhhhhhhhhhc
Q 045384 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAG----LKRTGKSCRLRWLNYL 62 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~R~~~~L 62 (194)
...||.||...|..+++.+.-. |..|+.... ..|+..++++||....
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999965 999999873 2699999999998654
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.14 E-value=0.099 Score=34.00 Aligned_cols=47 Identities=15% Similarity=0.007 Sum_probs=40.0
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCc---HHHHhhhC--CCCCHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGNR---WSKIAKHL--PGRTDNEIKNFWRTRI 113 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~~---W~~Ia~~l--~gRt~~~~knrw~~~l 113 (194)
.+-.||+|..+..+++|..+|.. +..|.+.+ +|.|..+|+.+...+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999954 78998865 7999999999886653
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.97 E-value=0.067 Score=34.81 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCc--chhhhhhhhCC-Ccchhhhhhhhhhh
Q 045384 12 EVRKGPWTMEEDLILINYIANHGEG--VWNSLAKAAGL-KRTGKSCRLRWLNY 61 (194)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qcr~R~~~~ 61 (194)
.-.+-.||+|.-+.++.+|+..|.. -+..|.+.|+. +.|..+++.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999943 27899998863 57888888776655
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.76 E-value=0.062 Score=45.37 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcC-cHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGN-RWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
-+.||..|...++.++.+||. .|..||..++|+|..+|+.++.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457999999999999999995 69999999999999999887765544
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.23 E-value=0.11 Score=40.91 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhc---CcHHHHhh--hCCCCCHHHHHHHHHHHHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWG---NRWSKIAK--HLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G---~~W~~Ia~--~l~gRt~~~~knrw~~~l~~~~ 117 (194)
....||+.|-..|+.++.+|| .+|..|+. .|.++|..+|+..+..++....
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 446899999999999999999 47999987 4789999999998877665543
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.00 E-value=0.072 Score=44.26 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhh
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKA 44 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 44 (194)
..|+.+||..|+..|.+||.++|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999854
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.29 E-value=1.9 Score=35.68 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhc---CcHHHHhh--hCCCCCHHHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWG---NRWSKIAK--HLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G---~~W~~Ia~--~l~gRt~~~~knrw~~~l~~~ 116 (194)
+++||+-|-..|+.++.+|| .+|..|+. .|+.++...++.-+..++...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 48999977 588999999999998877643
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.26 E-value=0.78 Score=39.66 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---cchhhhhhhhC-----------CCcchhhhhhhhh
Q 045384 14 RKGPWTMEEDLILINYIANHGE---GVWNSLAKAAG-----------LKRTGKSCRLRWL 59 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~-----------~~Rt~~qcr~R~~ 59 (194)
++..||.+||..|+-++.+||. ++|..|-..+. ..||+..+..|-.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~ 286 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN 286 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 4556999999999999999998 89999965542 2466666555543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.00 E-value=3.5 Score=25.54 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 71 ITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 71 WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.++ .+..++.++-..|..+..||..+ |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44455666667788999999999 99999999887665544
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=78.35 E-value=1.8 Score=31.44 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=39.2
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc----hhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHH
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT----GKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHA 84 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~ 84 (194)
.|..+|.+.|. +.|..||..|+...+ +...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 35555555542 249999999975443 3567889999997642 378888888877664
No 101
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=77.76 E-value=15 Score=25.62 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhh---hhhhhc--CCCccCCCCCHHHHHHHHHHHHhhcCcHH
Q 045384 17 PWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRL---RWLNYL--RPDVKRGNITPEEQLLIMELHAKWGNRWS 91 (194)
Q Consensus 17 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~---R~~~~L--~p~~~~~~WT~eEd~~Ll~~~~~~G~~W~ 91 (194)
..|.++-..++.++. .|. .-..||+.+| .+...++. +|..+- ...-.....+++++..|+.+...-+-.=.
T Consensus 6 ~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~ 81 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTAR 81 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHH
T ss_pred cCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHH
Confidence 378888888888774 453 4889999997 44444432 222221 11112235788888888777332223457
Q ss_pred HHhhhCCC--CCHHHHHHHH
Q 045384 92 KIAKHLPG--RTDNEIKNFW 109 (194)
Q Consensus 92 ~Ia~~l~g--Rt~~~~knrw 109 (194)
+|+..| | -+...|....
T Consensus 82 ~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 82 DIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHH-CCCccHHHHHHHH
Confidence 888888 5 5666666543
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=76.79 E-value=4.4 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHh----hcCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 71 ITPEEQLLIMELHAK----WGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 71 WT~eEd~~Ll~~~~~----~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
.++.|-+ ++.+.-- .|..+..||..+ |-+...|+.+....+++-
T Consensus 11 L~~~er~-il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREAM-VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444444 4444443 577899999999 999999999876665543
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=73.06 E-value=4.5 Score=25.28 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHH----hhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 76 QLLIMELHA----KWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 76 d~~Ll~~~~----~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
+..++.+.- ..|..+..||..+ |-+...|+.+....+++
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344445544 3578899999999 99999999987766544
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=72.94 E-value=2 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
.|..+|...|. +.|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46777777662 24999999998544 78899999998875
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=68.47 E-value=4.4 Score=30.97 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 045384 11 AEVRKGPWTMEEDLILI--------NYIANHG 34 (194)
Q Consensus 11 p~~~kg~WT~eED~~L~--------~~v~~~g 34 (194)
|.-..|-||+|+|+.|. .++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 55678999999998865 4666776
No 106
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=68.40 E-value=7 Score=28.99 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=37.2
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc----hhhhhhhhhhhcCCC--ccCCCCCHHHHHHHHHH
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT----GKSCRLRWLNYLRPD--VKRGNITPEEQLLIMEL 82 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~R~~~~L~p~--~~~~~WT~eEd~~Ll~~ 82 (194)
.|..+|.+.|. +.|..||..|+...+ +.+++..|.++|.|- ..++.=+++|-+.-++.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~ 138 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDS 138 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 45666666652 249999999985332 457888999999772 23445555655544443
No 107
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=68.02 E-value=3.6 Score=28.79 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCc----chhhhhhhhhhhcCCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKR----TGKSCRLRWLNYLRPD 65 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~R----t~~qcr~R~~~~L~p~ 65 (194)
.|..+|.+.|. +.|..||..|+... .+.+++..|.++|.+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 56777777652 25999999998533 2467888999999874
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=68.01 E-value=3.7 Score=29.78 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc----hhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT----GKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~R~~~~L~p 64 (194)
.|..+|...|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777663 249999999985443 46778889998876
No 109
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=67.04 E-value=2.7 Score=28.58 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC-------ccCCCCCHHHHHHHH
Q 045384 23 DLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD-------VKRGNITPEEQLLIM 80 (194)
Q Consensus 23 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~-------~~~~~WT~eEd~~Ll 80 (194)
+.+|.++|+.|| |..++..+. ..|.. -+|. +++.+|..+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 999998886 22321 2343 357788888777653
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=66.88 E-value=9.2 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 75 Ed~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.+..++.++...|-.-..||..| |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445666666788899999999 99999999888765544
No 111
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=66.24 E-value=3.3 Score=29.60 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc---hhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT---GKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~R~~~~L~p 64 (194)
.|..+|.+.|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777762 249999999985432 45678888888865
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.80 E-value=6.4 Score=27.97 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHHhhcC--------cHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 79 IMELHAKWGN--------RWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 79 Ll~~~~~~G~--------~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
|..+|...|+ .|..||..|.--....++..|..+|-+.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 6667777774 6999999874333788999998877654
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.54 E-value=22 Score=22.31 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 71 ITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 71 WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.|+.|-+.| .++ ..|..-..||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 445 6778899999999 89999999888766554
No 114
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=62.00 E-value=10 Score=27.26 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=29.4
Q ss_pred HHHHHHhhcC--------cHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 79 IMELHAKWGN--------RWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 79 Ll~~~~~~G~--------~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
|..+|.+.|+ .|..||..|.--....+|..|..+|-+.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 5566666663 69999998743338999999998887753
No 115
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.59 E-value=18 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHhhcC--------cHHHHhhhCCCC-C---HHHHHHHHHHHHHHH
Q 045384 79 IMELHAKWGN--------RWSKIAKHLPGR-T---DNEIKNFWRTRIQKQ 116 (194)
Q Consensus 79 Ll~~~~~~G~--------~W~~Ia~~l~gR-t---~~~~knrw~~~l~~~ 116 (194)
|..+|.+.|+ .|..||..|.-- + ...+|..|..+|-+.
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 5566666663 699999988322 2 468888888877664
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=60.74 E-value=4.8 Score=29.03 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc---hhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT---GKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~R~~~~L~p 64 (194)
.|..+|.+.|. +.|..||..|+...+ +.+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776652 249999999985442 45678888888864
No 117
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.46 E-value=4.4 Score=28.28 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc---hhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT---GKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~R~~~~L~p 64 (194)
.|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777662 249999999985432 45678888887754
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=60.20 E-value=16 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHHhhcC--------cHHHHhhhCCCCC----HHHHHHHHHHHHHHH
Q 045384 78 LIMELHAKWGN--------RWSKIAKHLPGRT----DNEIKNFWRTRIQKQ 116 (194)
Q Consensus 78 ~Ll~~~~~~G~--------~W~~Ia~~l~gRt----~~~~knrw~~~l~~~ 116 (194)
.|..+|...|+ .|..||..|.--. ...+|..|..+|-+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36677777774 6999999883221 568899998887664
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=60.08 E-value=15 Score=24.06 Aligned_cols=40 Identities=8% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHHHh----hcCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 76 QLLIMELHAK----WGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 76 d~~Ll~~~~~----~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
+..++.+.-- .|-.+..||..+ |-+...|+.+-...+++-
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3344444443 567899999999 999999999876665543
No 120
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=59.69 E-value=25 Score=23.39 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467887777665444 788889999999 99999999988777655
No 121
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=59.10 E-value=3.1 Score=30.17 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
.|..+|.+.|. +.|..||..|+... +..++..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 45566655542 24999999998544 77888888888764
No 122
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=58.93 E-value=21 Score=23.85 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666665544 5 7788889999999 999999999887665543
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.78 E-value=21 Score=23.15 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467767665544 4 6788899999999 99999999987766554
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.36 E-value=24 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 69 GNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 69 ~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
...|+.|-+.|.- + ..|..-..||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567777765544 4 6677899999999 89999999888766544
No 125
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=56.50 E-value=11 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=26.9
Q ss_pred hhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHH
Q 045384 39 NSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIME 81 (194)
Q Consensus 39 ~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~ 81 (194)
..||..+. |+|+.+||..+. +. ..+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 57888886 999999999663 32 3599999987754
No 126
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=55.90 E-value=5.1 Score=27.35 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=26.9
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCc---chhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKR---TGKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~R---t~~qcr~R~~~~L~p 64 (194)
.|..+|.+.|. +.|..||..|+... .+.+++..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 45666665542 24999999998533 245678888888754
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=55.49 E-value=18 Score=26.61 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 74 EEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 74 eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
+-|..|+.++...| -.+..||+.+ |-+...|+.|.+.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888888777 4699999999 9999999999977766554
No 128
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.81 E-value=6.1 Score=28.41 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC-------cchhhhhhhhCCCcc---hhhhhhhhhhhcCC
Q 045384 25 ILINYIANHGE-------GVWNSLAKAAGLKRT---GKSCRLRWLNYLRP 64 (194)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~R~~~~L~p 64 (194)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777662 259999999985332 34667778777754
No 129
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=54.72 E-value=47 Score=22.52 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45678888876644 3 3688889999999 88999999988766655
No 130
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=54.55 E-value=23 Score=25.31 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHhhcC--------cHHHHhhhCCCCC----HHHHHHHHHHHHHHHH
Q 045384 78 LIMELHAKWGN--------RWSKIAKHLPGRT----DNEIKNFWRTRIQKQI 117 (194)
Q Consensus 78 ~Ll~~~~~~G~--------~W~~Ia~~l~gRt----~~~~knrw~~~l~~~~ 117 (194)
.|..+|...|+ .|.+||..|.--+ ...+|..|..+|-+.-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 36666777664 6999999883222 4688999988887653
No 131
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=54.35 E-value=22 Score=26.10 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=23.7
Q ss_pred hcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 86 WGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 86 ~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.|-....||..+ |-+...|+++....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466789999999 99999999988765544
No 132
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=53.22 E-value=27 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 75 Ed~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
.+..++.++...|-....||..+ |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33445666667788899999999 9999999988765544
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=52.41 E-value=27 Score=20.68 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 77 LLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 77 ~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..++.+ -..|..-.+||..+ |-+...|+.+....+++
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344555 35677788999999 99999999988776654
No 134
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=49.46 E-value=14 Score=27.93 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=27.4
Q ss_pred hhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHH
Q 045384 38 WNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIME 81 (194)
Q Consensus 38 W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~ 81 (194)
=..||..+. |+|+.++|..+. +. ..+|+||++.+.+
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I~-nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------IV-NDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------CC-CCCCHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 467888886 999999998663 32 3599999987643
No 135
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.25 E-value=15 Score=27.08 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
+-|..|+.+++..+.-.+..||+.+| -+...|+.|...+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45788899998888778999999997 68888988888765443
No 136
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.89 E-value=71 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=28.0
Q ss_pred HHHHHHhhcC--------cHHHHhhhCCCC--C--HHHHHHHHHHHHHHHH
Q 045384 79 IMELHAKWGN--------RWSKIAKHLPGR--T--DNEIKNFWRTRIQKQI 117 (194)
Q Consensus 79 Ll~~~~~~G~--------~W~~Ia~~l~gR--t--~~~~knrw~~~l~~~~ 117 (194)
|..+|...|+ .|..||..|.-- + ...+|..|..+|-+.-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE 97 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYN 97 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 6666777764 699999988321 2 3688999988887653
No 137
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.76 E-value=26 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.8
Q ss_pred hhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 85 KWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 85 ~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..|-....||..| |-+...|+++....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4566889999999 99999999888765443
No 138
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=46.67 E-value=36 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcC--------cHHHHhhhCC--CC---CHHHHHHHHHHHHHHHH
Q 045384 77 LLIMELHAKWGN--------RWSKIAKHLP--GR---TDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 77 ~~Ll~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~knrw~~~l~~~~ 117 (194)
-.|..+|...|+ .|..||..|. .. ....+|..|..+|-+.-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 346677777774 6999999872 22 25788999998887653
No 139
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=45.67 E-value=26 Score=24.72 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc--chhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhh
Q 045384 15 KGPWTMEEDLILINYIANHGEG--VWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKW 86 (194)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~ 86 (194)
-.++++++-..|++.+...+.. --..|+..+| .++..+|. |-|.+.+...++||-+.|++.+.+|
T Consensus 44 Fsk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P--~~~dElra-----li~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 44 VEKCDAESAQKVVEELSSIISREDVRAVLASICP--ITPDEVRS-----ILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp TCSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCC--CSSCCCCT-----TTTTTCCCCCCCTHHHHHHHHC---
T ss_pred HcCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCHHHHHH-----HHHhhccCCCCHHHHHHHHHHHHHH
Confidence 3467888888887777666533 2567888887 66665543 3455566678999999999988876
No 140
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=44.86 E-value=38 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 72 T~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55566677777788999999999999 777766644
No 141
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.83 E-value=37 Score=18.48 Aligned_cols=38 Identities=8% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw 109 (194)
..++++-..++.++ .-|.....||+.| |-+...|....
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666666665 4577899999999 88888876543
No 142
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.80 E-value=27 Score=22.90 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..|+.|-+.|. ++ ..|..-..||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666655544 44 5677888999999 99999999988766554
No 143
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=44.73 E-value=36 Score=25.69 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 81 ELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 81 ~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.+.-..|-....||..| |-+...|+.+....+++
T Consensus 197 ~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 197 QLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33334467899999999 99999998877655443
No 144
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.99 E-value=34 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHhhcC--------cHHHHhhhC--CCC---CHHHHHHHHHHHHHHH
Q 045384 78 LIMELHAKWGN--------RWSKIAKHL--PGR---TDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 78 ~Ll~~~~~~G~--------~W~~Ia~~l--~gR---t~~~~knrw~~~l~~~ 116 (194)
.|..+|...|+ .|..||..| +.. ....+|..|..+|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 36666777764 699999987 222 2568899998877664
No 145
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=43.89 E-value=55 Score=23.30 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 045384 74 EEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 118 (194)
Q Consensus 74 eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~ 118 (194)
+-|..|+.++...| ..+..||+.+ |-+...|..+.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34556777777766 4799999999 89999999999887766543
No 146
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.80 E-value=37 Score=24.28 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=48.9
Q ss_pred CCCCCHHHH--HHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHHHHHhhcC----
Q 045384 15 KGPWTMEED--LILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGN---- 88 (194)
Q Consensus 15 kg~WT~eED--~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~~~~~~G~---- 88 (194)
+-.|.+.+. +.|...++..|+. ...++. ++ +|... --.|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 456888776 4577777777753 444442 33 34432 1236677777774
Q ss_pred ----cHHHHhhhC--CCC---CHHHHHHHHHHHHHHH
Q 045384 89 ----RWSKIAKHL--PGR---TDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 89 ----~W~~Ia~~l--~gR---t~~~~knrw~~~l~~~ 116 (194)
.|..||..| |.- ....+|..|..+|-+.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999988 321 2468899998877653
No 147
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=42.71 E-value=31 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 77 LLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 77 ~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 345666788899999999999 777766644
No 148
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=42.63 E-value=44 Score=21.56 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhhc----CcHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 045384 72 TPEEQLLIMELHAKWG----NRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 116 (194)
Q Consensus 72 T~eEd~~Ll~~~~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~l~~~ 116 (194)
|.+-|..|+.++...| ..=..||+.| |-+...|..+-..+.+..
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5667788889988888 3579999999 788888877665554443
No 149
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.21 E-value=47 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHH
Q 045384 74 EEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIK 106 (194)
Q Consensus 74 eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~k 106 (194)
-|.+.|..++..++.+.++.|+.| |=+...+.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 466778889999999999999998 66665443
No 150
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.33 E-value=45 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 71 ITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 71 WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
.++.+ ..++.++...|..-..||..+ |-|...|+.+....++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44444 445566667788899999999 9999999988766543
No 151
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=41.10 E-value=34 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.413 Sum_probs=26.2
Q ss_pred CccCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 65 DVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 65 ~~~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
.+-...=|.++ |..+....|..|..+|..| |=+..+|..
T Consensus 16 ~~~~~~~t~~~---l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDRQ---INQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHHH---HHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHHH---HHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33344445554 4445678899999999998 777666543
No 152
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.97 E-value=17 Score=26.85 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHhCCcc-----hhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHHHH
Q 045384 19 TMEEDLILINYIANHGEGV-----WNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIME 81 (194)
Q Consensus 19 T~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~Ll~ 81 (194)
+.+.-.-|+.+..-++... =..||..+. |+|+.++|..+. +. ..+|+||++.+.+
T Consensus 95 d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~-gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 95 DQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS-SCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 4444444444444444331 246888886 999999999763 22 3589999887654
No 153
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=40.97 E-value=36 Score=24.03 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=24.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHH
Q 045384 67 KRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIK 106 (194)
Q Consensus 67 ~~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~k 106 (194)
-...=|.++ |..+....|..|..+|..| |=+..+|.
T Consensus 18 ~~~~~t~~~---l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 18 LNSSPSDRQ---INQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp GGSCCCHHH---HHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred ccCCCCHHH---HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 333445554 4445677899999999998 76666554
No 154
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.70 E-value=14 Score=27.06 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=23.1
Q ss_pred hcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 86 WGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 86 ~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
.|-....||..+ |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 355778899999 89999999988766554
No 155
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.95 E-value=51 Score=24.48 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 74 EEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 74 eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
+-|..|+.++...| ..+..||+.+ |-+...|..|.+.+....+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667778777766 4699999999 8999999999877655543
No 156
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=37.27 E-value=37 Score=22.13 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhh
Q 045384 18 WTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSC 54 (194)
Q Consensus 18 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc 54 (194)
.|...++++..+.+..|...=-.||+.+| -|+++++
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~V 42 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDV 42 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGT
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhc
Confidence 45555778888889999887889999999 7999987
No 157
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=37.02 E-value=65 Score=23.00 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 75 Ed~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-|..|+.++...| ..+..||+.+ |-+...|..+.+.+....+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4556777777666 4799999999 8999999999877766544
No 158
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=36.80 E-value=60 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHH
Q 045384 74 EEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNF 108 (194)
Q Consensus 74 eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knr 108 (194)
-|...|.+++..+|.+-++.|+.| |=+...+..+
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 466778889999999999999998 7777665443
No 159
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=36.06 E-value=67 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhc----CcHHHHhhhCCCCCHHHHHHHHHHHHH
Q 045384 73 PEEQLLIMELHAKWG----NRWSKIAKHLPGRTDNEIKNFWRTRIQ 114 (194)
Q Consensus 73 ~eEd~~Ll~~~~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~l~ 114 (194)
.+-++.|++++...| -.=..||+.| |-+...|+.+-..+.+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455778889998888 3579999999 7888888776655443
No 160
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=35.38 E-value=39 Score=25.17 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCC
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPD 65 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~ 65 (194)
+-|..|+.++...+...+..||+.+| -+...|+.|...+....
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45677888888888778999999997 67888888877665443
No 161
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=35.11 E-value=48 Score=22.90 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=20.9
Q ss_pred HHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 79 IMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 79 Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
|..+....|..|..+|.+| |=+..+|..
T Consensus 21 ~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 21 IEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4445566789999999999 777766644
No 162
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=31.10 E-value=49 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 77 LLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 77 ~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
+.|+++-..-|-.|.+||+.+ |+|...+-.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vta 45 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTA 45 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHH
Confidence 456777777889999999999 899875544
No 163
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=30.89 E-value=1.6e+02 Score=22.43 Aligned_cols=84 Identities=18% Similarity=0.079 Sum_probs=52.8
Q ss_pred CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCccCCCCCHHHHHHH
Q 045384 1 MDKTPCN-SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLI 79 (194)
Q Consensus 1 m~r~~~n-~~~p~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~~~~~WT~eEd~~L 79 (194)
|++.|-+ +..-...+-+|-.+--..=.+++.+||-.+-.++-+. .+....+|..-..++.-. ..+++-..+...|
T Consensus 1 ~~~~~~~~~k~~~~p~~~w~~~~~~~E~~l~~~YgL~nk~e~w~~---~~~~~~iR~~ar~L~~l~-~~d~~r~~~~~~l 76 (181)
T 2xzm_D 1 MGKTYINTSKTYSTPRRPYEKERLDNEMKLIGTFGLKNKREVWRV---QMILAKFRKAARELLTLD-PKDPRRLFEGSAL 76 (181)
T ss_dssp CCCCCSCCCCCCCCCSSTTCHHHHHHHHHHHHHTTCCSHHHHHHH---HHHHHHHHHHHHHHHTSC-TTCHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCCCCCccccccHHHHHHHHHhCCCCHHHHHHH---HHHHHHHHHHHHHHHcCC-ccccHHHHHHHHH
Confidence 6666554 4555567888988877777889999998886666544 233334444433333211 2344445567778
Q ss_pred HHHHHhhcC
Q 045384 80 MELHAKWGN 88 (194)
Q Consensus 80 l~~~~~~G~ 88 (194)
+.-...||-
T Consensus 77 l~kl~~~g~ 85 (181)
T 2xzm_D 77 LRRMFKYGL 85 (181)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhcc
Confidence 888888885
No 164
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=30.88 E-value=45 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 75 Ed~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
++..++.+....|-.-.+||..+ |-+...|+++....+++
T Consensus 97 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 97 LSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp THHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555555677889999999 99999999988665444
No 165
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.39 E-value=96 Score=22.01 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 045384 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 119 (194)
Q Consensus 75 Ed~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~ 119 (194)
-|..|+.++...| ..+..||+.+ |-+...|..+.+.+.+..+-.
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 4556777777766 4799999999 899999999998877665433
No 166
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=30.09 E-value=22 Score=24.12 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 73 PEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 73 ~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
.+|-+.|+.. ...|..|..+|..| |=+...|..
T Consensus 5 r~~v~~ll~~-~~~G~dW~~LA~~L-g~~~~~I~~ 37 (91)
T 2ib1_A 5 QEEVQRLLMM-GEPAKGWQELAGHL-GYQAEAVET 37 (91)
T ss_dssp HHTTHHHHTT-TCCSSTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhcC-CCCCccHHHHHHHc-CCCHHHHHH
Confidence 4566677773 55689999999999 877777765
No 167
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.61 E-value=68 Score=25.15 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 70 NITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
..++.|-+. +.++ ..|-.-.+||..| |.+...|+.|-...+++
T Consensus 197 ~L~~~erev-l~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKEI-LRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456555554 4445 5788899999999 99999999988766544
No 168
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=29.20 E-value=31 Score=22.97 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 73 PEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 73 ~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
.+|-..++. |..|..+|..| |=+...|.+
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHH
Confidence 355555665 99999999999 767766655
No 169
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=27.95 E-value=54 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCcHHHHhhhCCCCCHHHHHH
Q 045384 78 LIMELHAKWGNRWSKIAKHLPGRTDNEIKN 107 (194)
Q Consensus 78 ~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~kn 107 (194)
.+..+....|..|..+|..| |=+..+|..
T Consensus 16 ~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 16 AFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 34445567788999999999 777766644
No 170
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.78 E-value=1.2e+02 Score=19.14 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=38.0
Q ss_pred hcCCCccCCCCCHHHHHHHHHHHHhh--cCc--HHHHhhhCCCCCHHHHHHHHHHH
Q 045384 61 YLRPDVKRGNITPEEQLLIMELHAKW--GNR--WSKIAKHLPGRTDNEIKNFWRTR 112 (194)
Q Consensus 61 ~L~p~~~~~~WT~eEd~~Ll~~~~~~--G~~--W~~Ia~~l~gRt~~~~knrw~~~ 112 (194)
..+|...+..+|.+.-..|...+... ... =..||..+ |-+..+|+.-|.+.
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNr 59 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDR 59 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHH
Confidence 34566678889999999988887653 222 35678888 99999999977654
No 171
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.43 E-value=1e+02 Score=21.35 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 76 QLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 76 d~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
|..|+..+...| ..+..||+.+ |-+...|..+.+.+....+
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~ 47 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGI 47 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 556677776655 4799999999 9999999999877766554
No 172
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.12 E-value=1.1e+02 Score=20.62 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=22.6
Q ss_pred cCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 87 GNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 87 G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
|-....||..+ |-|...|+++-...+++
T Consensus 39 ~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 39 DYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46799999999 88999998877665544
No 173
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=27.10 E-value=1.1e+02 Score=22.05 Aligned_cols=42 Identities=7% Similarity=0.072 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 75 Ed~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-|..|+.++...| ..+..||+.+ |-+...|..+...+.+..+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4556777777666 4799999999 8999999999877766554
No 174
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=26.64 E-value=52 Score=20.05 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcc
Q 045384 17 PWTMEEDLILINYIANHGEGVWNSLAKAAGLKRT 50 (194)
Q Consensus 17 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 50 (194)
....-|.+.|..++..+ ++-...|+.+|..|+
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHT 48 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHH
Confidence 35567888899999988 468899999986655
No 175
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.63 E-value=76 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
+-|..|+.++...+.-.+..||+.+| -+...|+.|...+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN--TTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 44667778888888778999999997 56677777766554
No 176
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=25.80 E-value=1.1e+02 Score=20.30 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 76 QLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 76 d~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-..|+.++...|..=..||+.| |-+...|+.|-+.+.+..+
T Consensus 19 ~~~IL~lL~~~g~sa~eLAk~L-giSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 19 VCEAIKTIGIEGATAAQLTRQL-NMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp HHHHHHHHSSSTEEHHHHHHHS-SSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3456677777887789999999 8999999988877665543
No 177
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.74 E-value=1.1e+02 Score=21.61 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 75 Ed~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-|..|+.++...| ..+..||+.+ |-+...|..+.+.+.+..+
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~ 46 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGV 46 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCc
Confidence 3566777777666 5799999999 8999999999877765544
No 178
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.69 E-value=85 Score=20.61 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHH
Q 045384 73 PEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIK 106 (194)
Q Consensus 73 ~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~k 106 (194)
.-|.+.|.+++..++.+.++.|+.| |=+...+.
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLy 72 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHH
Confidence 3466778888999999999999988 76666554
No 179
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.78 E-value=85 Score=22.32 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhc
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L 62 (194)
+-|..|+.++...+...+..||+.+| -+...|+.|...+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 46 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLR 46 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 34567777888877778999999997 57777877776554
No 180
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.63 E-value=1.2e+02 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 74 EEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 74 eEd~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
+-|..|+.++...| ..+..||+.+ |-+...|..+.+.+.+..+
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~ 60 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGV 60 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34556777777666 4799999999 9999999999977766554
No 181
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.55 E-value=1.4e+02 Score=21.27 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHH-----hhcCcHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q 045384 70 NITPEEQLLIMELHA-----KWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 120 (194)
Q Consensus 70 ~WT~eEd~~Ll~~~~-----~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~~~~ 120 (194)
.-|+.|-..|+.+.. ..+..-..||+.+ |.+..+|...-..++++.+-..
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 357788888888776 3446789999999 9999999998888888876444
No 182
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=22.65 E-value=77 Score=23.42 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
+-|..|+.++...+...+..||+.+| -+...|+.|...+...
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLK--KPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 34567777888877778999999997 5677787777665443
No 183
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=22.61 E-value=90 Score=22.48 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCC
Q 045384 21 EEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRP 64 (194)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p 64 (194)
+-|..|+.++...+.-.+..||+.+| -+...|+.|...+...
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVA--LSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 34566777888877778999999997 5677787776655443
No 184
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=22.10 E-value=1.3e+02 Score=24.72 Aligned_cols=95 Identities=11% Similarity=0.184 Sum_probs=58.2
Q ss_pred CCHHHH-HHHHHHHHHhCCcchhhhhhhhCCCcchhhh---hhhhhhhcCCCccC---CCCC--------------HHHH
Q 045384 18 WTMEED-LILINYIANHGEGVWNSLAKAAGLKRTGKSC---RLRWLNYLRPDVKR---GNIT--------------PEEQ 76 (194)
Q Consensus 18 WT~eED-~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc---r~R~~~~L~p~~~~---~~WT--------------~eEd 76 (194)
|.+++| +.|.++++-.|+. =..|-..++ +|+..|- +..|......++.+ ...+ .+.|
T Consensus 2 f~~~~Da~~L~kA~kg~Gtd-e~~ii~IL~-~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~D 79 (308)
T 2hyv_A 2 FDAERDALNIETAIKTKGVD-EVTIVNILT-NRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYD 79 (308)
T ss_dssp CCHHHHHHHHHHHHHSTTCC-HHHHHHHHT-TSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCC-HHHHHHHHh-cCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHH
Confidence 677777 4577888877754 567777887 8999774 55676655544321 1111 2333
Q ss_pred H-HHHHHHHhhcCcHHHHhhhCCCCCHHHH---HHHHHHHHH
Q 045384 77 L-LIMELHAKWGNRWSKIAKHLPGRTDNEI---KNFWRTRIQ 114 (194)
Q Consensus 77 ~-~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~---knrw~~~l~ 114 (194)
. .|.++++-.|..=..|-..|-+||..++ +..|.....
T Consensus 80 A~~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~Ik~aY~~~y~ 121 (308)
T 2hyv_A 80 ASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYK 121 (308)
T ss_dssp HHHHHHHTSTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 3 4445666677665566666668998765 555654443
No 185
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.98 E-value=1.8e+02 Score=22.14 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 68 ~~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
....|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+-....+|
T Consensus 173 ~~~Lt~~e~~vl~-~~-~~g~s~~eIa~~l-~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WA-SKGKTASVTANLT-GINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHH-HH-HTTCCHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3468888888664 44 4788899999999 99999999988766554
No 186
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.92 E-value=1.5e+02 Score=20.76 Aligned_cols=69 Identities=9% Similarity=0.051 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhhcCCCc--cCCCCCHHHHHHHH--------HHHHhhcCcHHH
Q 045384 23 DLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDV--KRGNITPEEQLLIM--------ELHAKWGNRWSK 92 (194)
Q Consensus 23 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~L~p~~--~~~~WT~eEd~~Ll--------~~~~~~G~~W~~ 92 (194)
-++|..+++++.. +-..|.+.+- ++.-....--.-++++.- ..--|+..+|..|. +++.+||.. .
T Consensus 14 ~~~i~~lMeef~~-DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~e--n 88 (111)
T 3k6g_A 14 IKIIRQLMEKFNL-DLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGAQ--N 88 (111)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhhH--H
Confidence 4677888888885 4777777763 333333331112334421 23469999998775 456778864 4
Q ss_pred Hhhh
Q 045384 93 IAKH 96 (194)
Q Consensus 93 Ia~~ 96 (194)
||++
T Consensus 89 VAkR 92 (111)
T 3k6g_A 89 VARR 92 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 187
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.67 E-value=58 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=18.3
Q ss_pred hhhhhhhhhcC-CCccCCCCCHHHHHHHH
Q 045384 53 SCRLRWLNYLR-PDVKRGNITPEEQLLIM 80 (194)
Q Consensus 53 qcr~R~~~~L~-p~~~~~~WT~eEd~~Ll 80 (194)
++-+.+..-.. |.-..|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 33444443333 44567899999999875
No 188
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=20.54 E-value=1.3e+02 Score=20.02 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q 045384 14 RKGPWTMEEDLILINYIANHGEG 36 (194)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~ 36 (194)
..+.|+++=+..+.+++..|...
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~ 27 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPC 27 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSS
T ss_pred cCCcCCHHHHHHHHHHHHHcCCC
Confidence 46889999999999999998643
No 189
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.52 E-value=1.8e+02 Score=20.30 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhc-CcHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 045384 75 EQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 117 (194)
Q Consensus 75 Ed~~Ll~~~~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~l~~~~ 117 (194)
-|..|+.++...| .....||+.+ |-+...|..+-+.+.+..+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 48 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI-KLSPPSVTERVRQLESFGI 48 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3556777777766 4699999999 8899999998877766554
No 190
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.50 E-value=2.2e+02 Score=19.75 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhh---hhhhhh--cCCCcc----CCCCCHHHHHHHHHHHHhh
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCR---LRWLNY--LRPDVK----RGNITPEEQLLIMELHAKW 86 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr---~R~~~~--L~p~~~----~~~WT~eEd~~Ll~~~~~~ 86 (194)
.+.|.++-..++.++. .|. .-..||+.++ .+...++ .+|... +.+... ....++++.+.|++++...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689998888888885 453 4889999997 4444333 333321 222211 2347888888888887654
Q ss_pred c-CcHHHHhhhC
Q 045384 87 G-NRWSKIAKHL 97 (194)
Q Consensus 87 G-~~W~~Ia~~l 97 (194)
. -.-..|+..|
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 3 2234565544
No 191
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.37 E-value=2.3e+02 Score=19.96 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhhhhhCCCcchhhhhhhhhhh------cCCCcc----CCCCCHHHHHHHHHHHHh
Q 045384 16 GPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNY------LRPDVK----RGNITPEEQLLIMELHAK 85 (194)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R~~~~------L~p~~~----~~~WT~eEd~~Ll~~~~~ 85 (194)
.+.|.++-..++.++. .|. .-..||+.++ .+...+ .||... +.+... ....++++.+.|++++..
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3688888888888885 453 4889999997 343333 334332 222211 234677777778887765
Q ss_pred hc-CcHHHHhhhC
Q 045384 86 WG-NRWSKIAKHL 97 (194)
Q Consensus 86 ~G-~~W~~Ia~~l 97 (194)
.. -.-.+|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 43 2234555544
No 192
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=20.05 E-value=2.5e+02 Score=23.08 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCHHHHHH-HHHHHHHhCCcchhhhhhhhCCCcchhhh---hhhhhhhcCCCccC-------C-----------CCCHH
Q 045384 17 PWTMEEDLI-LINYIANHGEGVWNSLAKAAGLKRTGKSC---RLRWLNYLRPDVKR-------G-----------NITPE 74 (194)
Q Consensus 17 ~WT~eED~~-L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc---r~R~~~~L~p~~~~-------~-----------~WT~e 74 (194)
.|.++.|.. |.++++-.|+. =..|-..+. +|++.|. +..|......++-. | +.-..
T Consensus 20 ~f~~~~DA~~L~kA~kG~Gtd-E~~lieIL~-~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~ 97 (327)
T 1w3w_A 20 HFNPDPDAETLYKAMKGIGTN-EQAIIDVLT-KRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRY 97 (327)
T ss_dssp SCCCHHHHHHHHHHHSSSSCC-HHHHHHHHT-TSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHH
T ss_pred CCCHHHHHHHHHHHhcCCCCC-HHHHHHHHh-cCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHH
Confidence 388888865 56777777765 345555665 8999875 55666655544321 1 23344
Q ss_pred HHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHH
Q 045384 75 EQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 109 (194)
Q Consensus 75 Ed~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw 109 (194)
+=..|.++++..|..=..+-..|-+||..+++.-.
T Consensus 98 DA~~L~~A~~g~Gtde~~lieIL~tRs~~ql~~i~ 132 (327)
T 1w3w_A 98 EAKELHDAMKGLGTKEGVIIEILASRTKNQLREIM 132 (327)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHhCCHHHHHHHH
Confidence 44556666766665544455566689988775543
No 193
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.02 E-value=1.7e+02 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 045384 69 GNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 115 (194)
Q Consensus 69 ~~WT~eEd~~Ll~~~~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l~~ 115 (194)
...|+.|-+.| .++ ..|..-.+||..| |-+...|+.+-...++|
T Consensus 172 ~~Lt~~e~~vl-~~~-~~g~s~~eIa~~l-~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYL-RWI-AVGKTMEEIADVE-GVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHH-HHH-TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35888888765 444 4788889999999 99999999988766554
Done!