BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045385
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1
Length = 280
Score = 330 bits (846), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/182 (86%), Positives = 166/182 (91%), Gaps = 1/182 (0%)
Query: 1 MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-V 59
ME SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD ERQVMLEG V
Sbjct: 1 MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAV 60
Query: 60 PAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
+ GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFI
Sbjct: 61 GGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFI 120
Query: 120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
CHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+EC
Sbjct: 121 CHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQEC 180
Query: 180 PI 181
P+
Sbjct: 181 PM 182
>sp|Q8LQ36|ATX3_ORYSJ Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica
GN=Os01g0851400 PE=3 SV=1
Length = 336
Score = 289 bits (740), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/188 (76%), Positives = 157/188 (83%), Gaps = 4/188 (2%)
Query: 4 ASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAAS 63
ASNGG+LYHEVQE KLCAVHCVNT LQGPFFSEFDL+ALA DLD+ ERQVM EG AA+
Sbjct: 7 ASNGGLLYHEVQEGKLCAVHCVNTTLQGPFFSEFDLSALAVDLDQRERQVMSEGAAGAAT 66
Query: 64 SG--DFLTEE--SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
+ DFL E SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P DPELE AFI
Sbjct: 67 TAAGDFLAEGEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFI 126
Query: 120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
CHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LKG GWSIF VRGNFPKEC
Sbjct: 127 CHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNFPKEC 186
Query: 180 PISSSDSS 187
P+++ S+
Sbjct: 187 PMATEGSN 194
>sp|P54252|ATX3_HUMAN Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=4
Length = 364
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++HE QE LCA HC+N +LQG +FS +L+++A LD ER M EG V + FL
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
+ S N+ G FSIQV+ AL+VW L++I N P + +IDP E +FIC+ +HWF +
Sbjct: 64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK+ +W+N +SL PE +S YL+ +L L+ G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170
>sp|Q9CVD2|ATX3_MOUSE Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2
Length = 355
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++HE QE LCA HC+N +LQG +FS +L+++A LD ER M EG V + FL
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
+ S N+ G FSIQV+ AL+VW L++I N P + +IDP E +FIC+ +HWF +
Sbjct: 64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK+ +W+N +SL PE +S YL+ +L L+ G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170
>sp|O35815|ATX3_RAT Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=1 SV=1
Length = 355
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++HE QE LCA HC+N +LQG +FS +L+++A LD ER M EG V + FL
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
+ S N+ G FSIQV+ AL+VW L++I N P + +IDP E +FIC+ +HWF +
Sbjct: 64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK+ +W+N +SL PE +S YL+ +L L+ G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170
>sp|Q9W689|ATX3_CHICK Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1
Length = 363
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 106/167 (63%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++HE QE LCA HC+N +LQG +FS +L+++A LD ER M EG V + FL
Sbjct: 4 IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQ 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
+ S N+ G FSIQV+ AL+VW L++I N P + IDP E +FIC+ +HWF +
Sbjct: 64 QPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTV 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK+ +W+N +SL PE +S YL+ +L L+ G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170
>sp|Q9H3M9|ATX3L_HUMAN Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2
Length = 355
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++HE QE LCA HC+N +LQG +FS +LA++A LD ER M EG V + FL
Sbjct: 4 IFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQ 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
+ S N+ G FSIQV+ AL+ W L++I N P + IDP E +FIC+ HWF I
Sbjct: 64 QPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTI 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK W+N +SL A PE +S L+ +L L+ +S+F+V+G+ P
Sbjct: 124 RKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 170
>sp|O17850|ATX3_CAEEL Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1
Length = 317
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 8/168 (4%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++ E QE+ LCA H +N +LQ + DL LA +D+ E+Q++ + +
Sbjct: 10 IFFEHQEAALCAQHALNMLLQDALYKWQDLRDLAIQMDKMEQQIL--------GNANPTP 61
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
S N++ G FSIQVL+KALE + L++ + P + +P A+IC+L +HWF +
Sbjct: 62 GRSENMNESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVL 121
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 177
RK +W+ +S+ P+ LS Y+S +L + G+SIF+V+G P+
Sbjct: 122 RKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSSEGYSIFVVQGVLPR 169
>sp|Q60XN1|ATX3_CAEBR Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1
Length = 319
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
++ E Q++ LCA H +N +LQ F+ +L LA +D+ E ++ A + G
Sbjct: 11 IFFERQQAALCAQHALNMLLQDSLFTYENLRDLARQMDQMEHDILGNN---ANAVG---- 63
Query: 70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
S N++ G FSIQV++KALE +DL++I + P + +P A++ +L +HWF +
Sbjct: 64 -RSENMNDSGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVL 122
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
RK +W+ +S+ P+ L+ Y+ YL +SIF+V+G P
Sbjct: 123 RKFGNQWFELNSVKNGPKLLTDTYVKEYLHQFAAENYSIFVVQGILP 169
>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2
SV=1
Length = 360
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 40/167 (23%)
Query: 4 ASNGGMLYHEVQESKLCAVHCVNTVLQGP-FFSEFDLAALASDLDRSERQVMLEGRVPAA 62
A + +YHE Q + C +HC+N + Q F++ L ++A L+ ++ E P +
Sbjct: 2 ADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNK--ETWTPLS 59
Query: 63 SSGDFLTEESHNVSLDGDFSIQVLQKALE------VW----------------DLQVIPL 100
F+ + HN ++ G++ + V+ ALE VW L I L
Sbjct: 60 ----FVLKPHHN-TITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVL 114
Query: 101 NCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
N P+ + HW +RK+NG WYN DS P+
Sbjct: 115 NVPVKRYGGL----------WRSRHWVVVRKINGVWYNLDSDLVVPQ 151
>sp|Q5R739|JOS1_PONAB Josephin-1 OS=Pongo abelii GN=JOSD1 PE=2 SV=1
Length = 202
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCA+H +N V Q D A D L+ S +T
Sbjct: 26 IYHEKQRRELCALHALNNVFQ-------DSNAFTRD--------TLQEIFQRLSPNTMVT 70
Query: 70 EESHNVSLDGDFSIQVLQKALE------VW-----DLQVIPLNCPIAEPAQIDPEL--EN 116
++ +G++ + V+ AL+ VW D+ VI L + + L
Sbjct: 71 PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP 130
Query: 117 AFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
+ HW C+R+V G +YN DS PE
Sbjct: 131 LKLPLKRQHWICVREVGGAYYNLDSKLKMPE 161
>sp|Q15040|JOS1_HUMAN Josephin-1 OS=Homo sapiens GN=JOSD1 PE=1 SV=1
Length = 202
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCA+H +N V Q D A D L+ S +T
Sbjct: 26 IYHEKQRRELCALHALNNVFQ-------DSNAFTRD--------TLQEIFQRLSPNTMVT 70
Query: 70 EESHNVSLDGDFSIQVLQKALE------VW-----DLQVIPLNCPIAEPAQIDPEL--EN 116
++ +G++ + V+ AL+ VW D+ VI L + + L
Sbjct: 71 PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP 130
Query: 117 AFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
+ HW C+R+V G +YN DS PE
Sbjct: 131 LKLPLKRQHWICVREVGGAYYNLDSKLKMPE 161
>sp|Q9DBJ6|JOS1_MOUSE Josephin-1 OS=Mus musculus GN=Josd1 PE=2 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCA+H +N V Q + F L R S +T
Sbjct: 26 IYHEKQRRELCALHALNNVFQDS--NAFTRETLQEIFQR-------------LSPNTMVT 70
Query: 70 EESHNVSLDGDFSIQVLQKALE------VW-----DLQVIPLNCPIAEPAQIDPEL--EN 116
++ +G++ + V+ AL+ VW D+ VI L + + L
Sbjct: 71 PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP 130
Query: 117 AFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
+ HW C+R+V G +YN DS PE
Sbjct: 131 LKLPLKRQHWICVREVGGAYYNLDSKLKMPE 161
>sp|Q8TAC2|JOS2_HUMAN Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1
Length = 188
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCAVH +N VLQ FS+ + L + D
Sbjct: 14 VYHERQRLELCAVHALNNVLQQQLFSQEAADEICKRL-----------------APDSRL 56
Query: 70 EESHNVSLDGDFSIQVLQKALE------VWDLQVIPLNCPIAEPAQID-----PELENAF 118
++ G++ + V+ AL+ VW + PL+ +A P + P +
Sbjct: 57 NPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLS-QLALPQVLGLILNLPSPVSLG 115
Query: 119 ICHL---HDHWFCIRKVNGEWYNFDSLYAAPEHL 149
+ L HW +R+V+G +YN DS APE L
Sbjct: 116 LLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEAL 149
>sp|Q9CR30|JOS2_MOUSE Josephin-2 OS=Mus musculus GN=Josd2 PE=2 SV=1
Length = 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 37/168 (22%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCAVH +N VLQ FS+ + L + D
Sbjct: 14 VYHERQRLELCAVHALNNVLQEQLFSQEAADEICKRL-----------------APDSRL 56
Query: 70 EESHNVSLDGDFSIQVLQKALE------VWDLQVIPLNCPIAEPAQID-----PELENAF 118
++ G++ + V+ AL+ VW + PL+ +A P + P +
Sbjct: 57 NPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLS-QLALPQVLGLILNLPSPVSLG 115
Query: 119 ICHL---HDHWFCIRKVNGEWYNFDSLYAAPEHLS-----KFYLSAYL 158
+ L HW +R+V+G +YN DS APE L + +L+A L
Sbjct: 116 LLSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAAL 163
>sp|Q5BJY4|JOS1_RAT Josephin-1 OS=Rattus norvegicus GN=Josd1 PE=2 SV=1
Length = 202
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCA+H +N V Q + F L R S +T
Sbjct: 26 IYHEKQRRELCALHALNNVFQDS--NAFTRETLQEIFQR-------------LSPNTVVT 70
Query: 70 EESHNVSLDGDFSIQVLQKALE------VW-----DLQVIPLNCPIAEPAQIDPEL--EN 116
++ +G++ + V+ AL+ VW D+ VI L + + L
Sbjct: 71 PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALANVMGFIMNLPSSLCWGP 130
Query: 117 AFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
+ HW C+R+V G +YN DS PE
Sbjct: 131 LKLPLKRQHWICVREVGGAYYNLDSKLKMPE 161
>sp|Q5EAE5|JOS1_BOVIN Josephin-1 OS=Bos taurus GN=JOSD1 PE=2 SV=1
Length = 202
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 30/177 (16%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
+YHE Q +LCA+H +N V Q + F L R S +T
Sbjct: 26 IYHEKQRRELCALHALNNVFQDS--NAFTRETLQEIFQR-------------LSPNTMVT 70
Query: 70 EESHNVSLDGDFSIQVLQKALE------VW-----DLQVIPLNCPIAEPAQIDPEL--EN 116
++ +G++ + V+ AL+ VW D+ I L + + L
Sbjct: 71 PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGAIALTNVMGFIMNLPSSLCWGP 130
Query: 117 AFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHL-SKFYLSAYLD-SLKGFGWSIFIV 171
+ HW C+R+V G +YN DS PE + K L +L L+G + +V
Sbjct: 131 LKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLV 187
>sp|Q9W422|JOSL_DROME Josephin-like protein OS=Drosophila melanogaster GN=CG3781 PE=2
SV=3
Length = 221
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 10 LYHEVQESKLCAVHCVNTVLQGP-FFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFL 68
+YHE Q LC +H +N + QGP FS+ +L + L + ++L
Sbjct: 39 IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTL----------------TPRNWL 82
Query: 69 TEESHNVSLDGDFSIQVLQKALE------VW----------DLQVIPLNCPIAEPAQIDP 112
+ G++ + V+ AL+ VW +L VI + PAQ+
Sbjct: 83 NPHRSWIGW-GNYDVNVIMYALQQRNCEAVWFDRRRDPHCLNLSVI-FGFILNVPAQMSL 140
Query: 113 ELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHL 149
H+ HW +R++NG +YN DS P+ L
Sbjct: 141 GYYIPLPFHMR-HWLALRRLNGSYYNLDSKLREPKCL 176
>sp|Q8R1F9|RPP40_MOUSE Ribonuclease P protein subunit p40 OS=Mus musculus GN=Rpp40 PE=2
SV=2
Length = 363
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 33 FFSEFDLAALASDLD-RSERQVMLEGRVPAASSGDFL-------TEESHNVSLDGDFSIQ 84
F DL L+ +LD + R++ + DFL TEES +S + IQ
Sbjct: 144 FVISIDLMDLSLNLDSKKYRRISWSFKEKKPLKFDFLLAWHPTGTEESTMMSYFSKYQIQ 203
Query: 85 VLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHW----FCIRKVNGEWYNFD 140
Q + + ++ L CP+ + + E E A W FC +N E YNF
Sbjct: 204 EHQPKVALSTVR--ELQCPVLRSSGLAGEPEEACSALEFFDWLGAVFCSADLNNEPYNFI 261
Query: 141 SLYAAPEHLSKFYLSAYLDSLKGF 164
S Y P+ S A+L ++ GF
Sbjct: 262 STYCCPQP-SAVVAQAFLCTITGF 284
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 72 SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRK 131
S + ++D +S+ K+L+ + +P+ CP E A+ + E N F HL + +
Sbjct: 352 SMDYTVDAGYSLWKCTKSLKRQPFRQVPIRCPGGELAKNEEEQANCFANHLETRFTHFQF 411
Query: 132 VNGEWYN--FDSL 142
E Y DSL
Sbjct: 412 ATTEQYQETLDSL 424
>sp|A7YWU3|RPP40_BOVIN Ribonuclease P protein subunit p40 OS=Bos taurus GN=RPP40 PE=2 SV=2
Length = 303
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 33 FFSEFDLAALASDLD-RSERQVMLEGRVPAASSGDFL-------TEESHNVSLDGDFSIQ 84
F DL L+S+LD + ++V + DFL E S +S + IQ
Sbjct: 84 FIVSIDLMDLSSNLDSKKYKRVSWAFKEKKPLKFDFLLAWHQTGAEGSTMMSYFSGYGIQ 143
Query: 85 VLQKALEVWDLQVIP-LNCPIAEPAQIDPELENAFICHLHDHW----FCIRKVNGEWYNF 139
Q + L P L CP+ + E E A H W F +N E YNF
Sbjct: 144 EHQPKIA---LSTTPDLRCPVLRSGLLGGEPEAACSAHELFDWLGAVFSHADLNNEPYNF 200
Query: 140 DSLYAAPEHLSKFYLSAYLDSLKGF 164
S Y P+ S A L S+ GF
Sbjct: 201 VSTYCCPQP-SSVVAQASLCSVTGF 224
>sp|P36966|PEX6_YARLI Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX6 PE=3 SV=2
Length = 1024
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 41 ALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPL 100
AL S L+ +E +V L RV ++ D + +++ L F + +++A+ V DL IP
Sbjct: 301 ALDSVLEAAE-EVKL-ARVLGPTTTDRTFQTAYHAGLQAYF--KPVKRAVRVGDLIPIPF 356
Query: 101 NCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYL 154
+ +A DPE+ H+ ++ + W+ SL + + SK YL
Sbjct: 357 DSILARTIGEDPEMS-----HIPLEALAVKPDSVAWFQVTSLNGSEDPASKQYL 405
>sp|Q8G5E7|SYFA_BIFLO Phenylalanine--tRNA ligase alpha subunit OS=Bifidobacterium longum
(strain NCC 2705) GN=pheS PE=3 SV=1
Length = 355
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 131 KVNGEWYNFDSLYAAPEHLSK-----FYLSA-YLDSLKGFGWSIFIVR 172
++ EWYNFDSL P+H ++ FY+ GF S +VR
Sbjct: 140 EIEAEWYNFDSLNFGPDHPARQMQDTFYVKGNQAKDAAGFVGSNMVVR 187
>sp|B7GTP9|SYFA_BIFLS Phenylalanine--tRNA ligase alpha subunit OS=Bifidobacterium longum
subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM
1222 / NCTC 11817 / S12) GN=pheS PE=3 SV=1
Length = 355
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 131 KVNGEWYNFDSLYAAPEHLSK-----FYLSA-YLDSLKGFGWSIFIVR 172
++ EWYNFDSL P+H ++ FY+ GF S +VR
Sbjct: 140 EIEAEWYNFDSLNFGPDHPARQMQDTFYVKGNQAKDAAGFVGSNMVVR 187
>sp|P53070|MTO1_YEAST Mitochondrial translation optimization protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MTO1 PE=1
SV=2
Length = 669
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 21 AVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGD 80
++H +T ++GP + A + DRS ++ LE P + D + + S+ D
Sbjct: 303 SIHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWLE---PEGFNSDVIYPNGISNSMPED 359
Query: 81 FSIQVLQKALEVWDLQVIP----LNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNG 134
+Q+++ + +++++ + +P Q+ P LE + D F ++NG
Sbjct: 360 VQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSLETKLV----DGLFLAGQING 413
>sp|Q5BK64|RPP40_RAT Ribonuclease P protein subunit p40 OS=Rattus norvegicus GN=Rpp40
PE=2 SV=2
Length = 363
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 33 FFSEFDLAALASDLD-RSERQVMLEGRVPAASSGDFL-------TEESHNVSLDGDFSIQ 84
F DL L+ +LD + R++ + DFL TEES +S + I+
Sbjct: 144 FIISIDLMDLSLNLDSKKYRRISWSFKEKKPLKFDFLLAWHHTGTEESTMMSYFSKYQIR 203
Query: 85 VLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHW----FCIRKVNGEWYNFD 140
Q + + V L CP+ + + + E E A W FC +N E +NF
Sbjct: 204 EHQPKVAL--STVRDLQCPVLQSSSLAGEPEEACNALEFFDWLGAVFCNADLNNEPHNFI 261
Query: 141 SLYAAPE 147
S Y P+
Sbjct: 262 STYCCPQ 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,387,679
Number of Sequences: 539616
Number of extensions: 2803538
Number of successful extensions: 5976
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5939
Number of HSP's gapped (non-prelim): 41
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)